|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
6-639 |
8.79e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.70 E-value: 8.79e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 6 NREYDLLMKEKSRLEKTLQEALEKHQREKNEMESHIRETALEEFRLQE-----EQWEAERRELQFIVQEQDTAVQNMHKK 80
Cdd:TIGR02168 287 QKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDElaeelAELEEKLEELKEELESLEAELEELEAE 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 81 VEKLETEHMDCSDLLRRQTSELeFSTQRE--------ERLRKEFEATTLRVRKLEENIEAERAAHLESKFnsEIIQLRIR 152
Cdd:TIGR02168 367 LEELESRLEELEEQLETLRSKV-AQLELQiaslnneiERLEARLERLEDRRERLQQEIEELLKKLEEAEL--KELQAELE 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 153 DLEGALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQESFAKLNLLE-----KEYFSKNKKLNEDIEEQKKVIID 227
Cdd:TIGR02168 444 ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLErlqenLEGFSEGVKALLKNQSGLSGILG 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 228 -------------------LSKRLQY----NEKSCSELQEELVMAKKHQAFLVETCENNVKELESILDSFTVSGQWTSGI 284
Cdd:TIGR02168 524 vlselisvdegyeaaieaaLGGRLQAvvveNLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGV 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 285 HKDKDK-PPSFSVVLE-RLRRTL--TDYQNKLEDASNELNSMNDV----------------KEKACNELDSTKQKIDSHT 344
Cdd:TIGR02168 604 AKDLVKfDPKLRKALSyLLGGVLvvDDLDNALELAKKLRPGYRIVtldgdlvrpggvitggSAKTNSSILERRREIEELE 683
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 345 KNIK-------ELQDKLADVNKELSHLHTKCADREAL---ISTLKVELQNVLHCWEKEKAQAAQSESELQKLSQAFHKDA 414
Cdd:TIGR02168 684 EKIEeleekiaELEKALAELRKELEELEEELEQLRKEleeLSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 415 EEKLTFLHTLYQHLVAGCVLIKQPEGMLDKFswSELCAVLQENVDALIADLNRANEKIRHLEYICKNKSDTMRELQQTQE 494
Cdd:TIGR02168 764 EELEERLEEAEEELAEAEAEIEELEAQIEQL--KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 495 DTftkvaeqikaqescwHRQKKELELQyselflevqkraqkfQEIAEKNMEKLN-HIEKSHEQLVlensHFKKLLSQTQR 573
Cdd:TIGR02168 842 DL---------------EEQIEELSED---------------IESLAAEIEELEeLIEELESELE----ALLNERASLEE 887
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 574 EQMSLLAACALMAGALYPLYSRSCALSTQRDFLQEQVNTFEL----FKLEIRTLAQALSTVEEKKQEEAK 639
Cdd:TIGR02168 888 ALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELrlegLEVRIDNLQERLSEEYSLTLEEAE 957
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
7-273 |
1.04e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.03 E-value: 1.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 7 REYDLLMKEKSRLEKTL-----QEALEKHQREKNEMESHirETALEEFRLQEEQWEAERRELQFIVQEQDTAVQNMHKKV 81
Cdd:COG1196 213 ERYRELKEELKELEAELlllklRELEAELEELEAELEEL--EAELEELEAELAELEAELEELRLELEELELELEEAQAEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 82 EKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVE 161
Cdd:COG1196 291 YELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 162 KASQAEAVADLEIIKNEFKEVESA---YEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKS 238
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRAaaeLAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
250 260 270
....*....|....*....|....*....|....*
gi 767954680 239 CSELQEELVMAKKHQAFLVETCENNVKELESILDS 273
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAELLEE 485
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
14-220 |
2.88e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.62 E-value: 2.88e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 14 KEKSRLEKTLQEALEKHQREKNEMESHIRETALEEFRLQEEQWEAERRELQFIVQEQDtavqnmhKKVEKLETEHMDCSD 93
Cdd:TIGR02169 740 EELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQ-------AELSKLEEEVSRIEA 812
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 94 LLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLES-----KFNSEI--IQLRIRDLEGALQVEKASQA 166
Cdd:TIGR02169 813 RLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLngkkeELEEELeeLEAALRDLESRLGDLKKERD 892
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 767954680 167 EAVADLEIIKNEFKEVESAYEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEE 220
Cdd:TIGR02169 893 ELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEI 946
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
305-1097 |
3.54e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 3.54e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 305 LTDYQNKLEDASNELNSMNDVKEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELQN 384
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 385 VLHCWEKEKAQAAQSESELQKLSQAFHKDAEEKltflhtlyqhlvagcvlikqpegmldkfswselcAVLQENVDALIAD 464
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKL----------------------------------EELKEELESLEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 465 LNRANEKIRHLEyickNKSDTMRELQQTQEDTFTKVAEQIKAQESCWHRQKKELElqyselflEVQKRAQKFQEIAEKNM 544
Cdd:TIGR02168 360 LEELEAELEELE----SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLE--------RLEDRRERLQQEIEELL 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 545 EKLNHIEKSHEQLVLENShfKKLLSQTQREQMSLLAacalmagalyplysrscALSTQRDFLQEQVNTFELFKLEIRTLA 624
Cdd:TIGR02168 428 KKLEEAELKELQAELEEL--EEELEELQEELERLEE-----------------ALEELREELEEAEQALDAAERELAQLQ 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 625 QALSTVEEKKQEEAKmkkktfkgliriFRKGVIAVLA-ANRLKILGQSCASLFTWMESFK--------EGIGMLVCTGEP 695
Cdd:TIGR02168 489 ARLDSLERLQENLEG------------FSEGVKALLKnQSGLSGILGVLSELISVDEGYEaaieaalgGRLQAVVVENLN 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 696 QDKhkfpkhqkeqlrclQALSWLTSSDLLAAiisSMAELQDVIGKADPNSR---ICGHLLIGAAKNSFAKLMDKISLVME 772
Cdd:TIGR02168 557 AAK--------------KAIAFLKQNELGRV---TFLPLDSIKGTEIQGNDreiLKNIEGFLGVAKDLVKFDPKLRKALS 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 773 ciPLHSSRSITyvekDSLVQ--RLAHGLHKVNTLALKYG--LRGHVPITKSTASLQKQILGFTQrlhaaevERRSLRLEV 848
Cdd:TIGR02168 620 --YLLGGVLVV----DDLDNalELAKKLRPGYRIVTLDGdlVRPGGVITGGSAKTNSSILERRR-------EIEELEEKI 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 849 TEFKRSVNEMKKELDKAQGLQMQL-NEFKQSKLITHE---KFESACEELNNALLREEQAQMLLNEQAQQLQELNYKLELH 924
Cdd:TIGR02168 687 EELEEKIAELEKALAELRKELEELeEELEQLRKELEElsrQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEEL 766
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 925 SSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIHDAESALRMAAKDKECVANHMRAVENT 1004
Cdd:TIGR02168 767 EERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQ 846
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 1005 LHKVRDQISLswSAASRNDFTLQLPKLHLETFAMEGLKGGPEvvacqAMIKSFMDVYQLASTRIMTLEKEMTSHRSHIAA 1084
Cdd:TIGR02168 847 IEELSEDIES--LAAEIEELEELIEELESELEALLNERASLE-----EALALLRSELEELSEELRELESKRSELRRELEE 919
|
810
....*....|...
gi 767954680 1085 LKSELHTACLREN 1097
Cdd:TIGR02168 920 LREKLAQLELRLE 932
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
17-361 |
4.20e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 4.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 17 SRLEKtlQEALEKHQREKNEMESHIRET--ALEEFRLQEEQWEAERRELQFIVQEQDTAVQNMHKKVEKLETEHMDCSDL 94
Cdd:TIGR02168 671 SILER--RREIEELEEKIEELEEKIAELekALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEER 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 95 LRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEI 174
Cdd:TIGR02168 749 IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 175 IKNEFKEVESAYER---EKHNAQESFAKLNL---------------LEKEYFSKNkKLNEDIEEQKKVIIDLSKRLQYNE 236
Cdd:TIGR02168 829 LERRIAATERRLEDleeQIEELSEDIESLAAeieeleelieeleseLEALLNERA-SLEEALALLRSELEELSEELRELE 907
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 237 KSCSELQEELVMAKKHQAFLVETCENNVKELESILDSFTVSGQWTSGIHKDKDKPPSFSvvLERLRRTLTDYQNKLEDAS 316
Cdd:TIGR02168 908 SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDD--EEEARRRLKRLENKIKELG 985
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767954680 317 N-ELNSMNDVKE----------------KACNELDSTKQKIDSHTKNikELQDKLADVNKEL 361
Cdd:TIGR02168 986 PvNLAAIEEYEElkerydfltaqkedltEAKETLEEAIEEIDREARE--RFKDTFDQVNENF 1045
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
8-250 |
4.35e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 4.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 8 EYDLLMKEKSRLEKTLQEALEKHQREKNEMEShiRETALEEFRLQEEQWEAERRELQFIVQEQDTAVQNMHKKVEKLETE 87
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQE--LEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 88 HMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAE 167
Cdd:TIGR02168 311 LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQ 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 168 AVADLEIIKNEFKEVESAYEREKHNAQESFAKLNLLEKEYFSKNKK-LNEDIEEQKKVIIDLSKRLQYNEKSCSELQEEL 246
Cdd:TIGR02168 391 LELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKeLQAELEELEEELEELQEELERLEEALEELREEL 470
|
....
gi 767954680 247 VMAK 250
Cdd:TIGR02168 471 EEAE 474
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
7-245 |
2.02e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 55.51 E-value: 2.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 7 REYDLLMKEKSRLEKTLQEALEKHQREKNEMEshiRETALEEFRLQEEqweaeRRELQFIVQEQDTAVQNMHKKVEKLET 86
Cdd:pfam17380 314 RRRKLEEAEKARQAEMDRQAAIYAEQERMAME---RERELERIRQEER-----KRELERIRQEEIAMEISRMRELERLQM 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 87 EHMDCSDLLRRQ-TSELEFSTQREERLRK--EFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKA 163
Cdd:pfam17380 386 ERQQKNERVRQElEAARKVKILEEERQRKiqQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERL 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 164 SQAEA---VADLEIIKNEFKEVESAYEREKHNAQESFA-KLNLLEKEyfSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSC 239
Cdd:pfam17380 466 RQQEEerkRKKLELEKEKRDRKRAEEQRRKILEKELEErKQAMIEEE--RKRKLLEKEMEERQKAIYEEERRREAEEERR 543
|
....*.
gi 767954680 240 SELQEE 245
Cdd:pfam17380 544 KQQEME 549
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2-204 |
3.77e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 3.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 2 IQNCNREYDLLMKEKSRLEKTLQEALEKHQREKNEMESHirETALEEFRLQEEQWEAERRELQFIVQEQDTAVQNMHKKV 81
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEEL--EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 82 EKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVE 161
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 767954680 162 KASQAEAVADLEIIKNEFKEVESAYEREKHNAQESFAKLNLLE 204
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLL 497
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
149-406 |
4.54e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 4.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 149 LRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQESFAKLNLLEKEYFSKNKKLNeDIEEQKKVIIDL 228
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEIS-RLEQQKQILRER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 229 SKRLQYNEKSCSELQEELVMAKKHQAFLVETCENNVKELESILDSFTVSGQWTSGIHKD-KDKPPSFSVVLERLRRTLTD 307
Cdd:TIGR02168 311 LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEElESRLEELEEQLETLRSKVAQ 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 308 YQNKLEDASNELNSMNDVKEKACNELDSTKQKIDSHTK-----NIKELQDKLADVNKELSHLHTKCADREALISTLKVEL 382
Cdd:TIGR02168 391 LELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKkleeaELKELQAELEELEEELEELQEELERLEEALEELREEL 470
|
250 260
....*....|....*....|....
gi 767954680 383 QNVLHCWEKEKAQAAQSESELQKL 406
Cdd:TIGR02168 471 EEAEQALDAAERELAQLQARLDSL 494
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2-256 |
5.04e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 5.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 2 IQNCNREYDLLMKEKSRLEKTLQEALEKHQREKNEMES-----HIRETALEEFRLQEEQWEAERRELQFIVQEQDTAVQN 76
Cdd:COG1196 248 LEELEAELEELEAELAELEAELEELRLELEELELELEEaqaeeYELLAELARLEQDIARLEERRRELEERLEELEEELAE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 77 MHKKVEKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEG 156
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 157 ALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNE 236
Cdd:COG1196 408 AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
250 260
....*....|....*....|
gi 767954680 237 KSCSELQEELVMAKKHQAFL 256
Cdd:COG1196 488 EAAARLLLLLEAEADYEGFL 507
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
74-641 |
9.41e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.14 E-value: 9.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 74 VQNMHKKVEKLETEHMDCSDLLRRQTSELEFSTQREERLRK---EFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLR 150
Cdd:PRK03918 195 IKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEElkeEIEELEKELESLEGSKRKLEEKIRELEERIEELKKE 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 151 IRDLEgalqvekasqaEAVADLEiiknEFKEVESAYEREKHNAQESFAKLNLLEKEYFSKNKKLNEdIEEQKKVIIDLSK 230
Cdd:PRK03918 275 IEELE-----------EKVKELK----ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEING-IEERIKELEEKEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 231 RLQYNEKSCSELQEEL-VMAKKHQAFlvETCENNVKELESILDSFTVsgqwtsgihKDKDKPPSFSVVLERLRRTLTDYQ 309
Cdd:PRK03918 339 RLEELKKKLKELEKRLeELEERHELY--EEAKAKKEELERLKKRLTG---------LTPEKLEKELEELEKAKEEIEEEI 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 310 NKLEDASNELNSMNDVKEKACNELDSTKQKI--------DSHTKNI-KELQDKLADVNKELSHLhtkcADREALISTLKV 380
Cdd:PRK03918 408 SKITARIGELKKEIKELKKAIEELKKAKGKCpvcgreltEEHRKELlEEYTAELKRIEKELKEI----EEKERKLRKELR 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 381 ELQNVLHCWE---KEKAQAAQSESELQKLSQAFHKDAEEKLTFLHTLYQHLVAgcvLIKQPEGMLDKFswselcavlqEN 457
Cdd:PRK03918 484 ELEKVLKKESeliKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIK---LKGEIKSLKKEL----------EK 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 458 VDALIADLNRANEKIRHLEyicKNKSDTMRELQQTQEDTFTKVAEQIKAQESCWhrqKKELELQYSELFLEV-QKRAQKF 536
Cdd:PRK03918 551 LEELKKKLAELEKKLDELE---EELAELLKELEELGFESVEELEERLKELEPFY---NEYLELKDAEKELEReEKELKKL 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 537 QEIAEKNMEKLNHIEKSHEQLVLENSHFKKLLSQTQ-----REQMSLLAACALMAGALYPLYSRSCALSTQRDFLQEQVN 611
Cdd:PRK03918 625 EEELDKAFEELAETEKRLEELRKELEELEKKYSEEEyeelrEEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELE 704
|
570 580 590
....*....|....*....|....*....|
gi 767954680 612 TFELFKLEIRTLAQALSTVEEKKQEEAKMK 641
Cdd:PRK03918 705 EREKAKKELEKLEKALERVEELREKVKKYK 734
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
16-331 |
9.77e-07 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 52.98 E-value: 9.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 16 KSRLEKTLQEALEKHQreKNEMESHIRETALEEFRLQEEQWEAERRELQFIVQEQDTAVQNMHKKVEKLETEHMDCSDLl 95
Cdd:pfam07888 33 QNRLEECLQERAELLQ--AQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSAS- 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 96 rrqtseLEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEII 175
Cdd:pfam07888 110 ------SEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQT 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 176 KNEFKEVESAYEREKHNAQESFAKLNLLEKEYFSKNKKLNE------DIEEQKKVIIDLSKRLQYNEKSCSELQEEL--- 246
Cdd:pfam07888 184 EEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTahrkeaENEALLEELRSLQERLNASERKVEGLGEELssm 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 247 ------VMAKKHQAFLvETCENNVKELESILDSFTVSGQWTS-------GIHKDKDKPPSFSVVLERLRRTLTDYQNKLE 313
Cdd:pfam07888 264 aaqrdrTQAELHQARL-QAAQLTLQLADASLALREGRARWAQeretlqqSAEADKDRIEKLSAELQRLEERLQEERMERE 342
|
330
....*....|....*...
gi 767954680 314 DASNELNsmndvKEKACN 331
Cdd:pfam07888 343 KLEVELG-----REKDCN 355
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2-200 |
1.65e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 1.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 2 IQNCNREYDLLMKEKSRLEKTLQEALEKHQREKNEMEShiRETALEEFRLQEEQWEAERRELQFIVQEQDTAVQNMHKKV 81
Cdd:TIGR02169 303 IASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEE--LEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEF 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 82 EKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVE 161
Cdd:TIGR02169 381 AETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQL 460
|
170 180 190
....*....|....*....|....*....|....*....
gi 767954680 162 KASQAEAVADLEIIKNEFKEVesayEREKHNAQESFAKL 200
Cdd:TIGR02169 461 AADLSKYEQELYDLKEEYDRV----EKELSKLQRELAEA 495
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
17-416 |
2.11e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 2.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 17 SRLEKTLQEaLEKHQREKNEMESHIRETALEEFRLQEEQWEAER-RELQFIVQEqdTAVQNMHKKVEKLETEHMDCSDLL 95
Cdd:TIGR02169 170 RKKEKALEE-LEEVEENIERLDLIIDEKRQQLERLRREREKAERyQALLKEKRE--YEGYELLKEKEALERQKEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 96 RRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAEraahleskfnSEIIQLRIRDLEGALQVEKASQAEAVAdleii 175
Cdd:TIGR02169 247 ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDL----------GEEEQLRVKEKIGELEAEIASLERSIA----- 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 176 knefkevesAYEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQynekscsELQEELvmakkhqaf 255
Cdd:TIGR02169 312 ---------EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYA-------ELKEEL--------- 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 256 lvetcENNVKELESIldsftvsgqwtsgihkdkdkppsfSVVLERLRRTLTDYQNKLEDASNELNSMNDVKEKACNELDS 335
Cdd:TIGR02169 367 -----EDLRAELEEV------------------------DKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQR 417
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 336 TKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELqnvlhcwEKEKAQAAQSESELQKLSQAFHKDAE 415
Cdd:TIGR02169 418 LSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADL-------SKYEQELYDLKEEYDRVEKELSKLQR 490
|
.
gi 767954680 416 E 416
Cdd:TIGR02169 491 E 491
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
17-642 |
2.62e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.90 E-value: 2.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 17 SRLEKTLQEALEKHQREKNEMESHIRETALEEFRLQEEQWEAER--RELQFIVQEQDTAVQNMHKKVEKLETEHMDCSDL 94
Cdd:pfam02463 165 SRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKalEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 95 LRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEA---ERAAHLESKFNSEIIQLRIRDlegaLQVEKASQAEAVAD 171
Cdd:pfam02463 245 LLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKlqeEELKLLAKEEEELKSELLKLE----RRKVDDEEKLKESE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 172 LEIIKNEFKEVESAYEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKK 251
Cdd:pfam02463 321 KEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELK 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 252 HQAflvetcENNVKELESILDSFTVSGQwtsgihKDKDKPPSFSVVLERLRRTLTDYQNKLEDASNELNSMNDVKEKACN 331
Cdd:pfam02463 401 SEE------EKEAQLLLELARQLEDLLK------EEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELK 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 332 ELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELQNVLHCWEKEKAQAAQSESELQKLSQAFH 411
Cdd:pfam02463 469 KSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTA 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 412 KDAE-EKLTFLHTLYQHLVAGCVLIKQPEGMLDKFSWSELCAVLQENVDALIADLNRANEKIRHLEYICKNKSDTMRELQ 490
Cdd:pfam02463 549 VIVEvSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGI 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 491 -QTQEDTFTKVAEQIKAQESCWHRQKKELELQYSELFLEVQKRAQKFQEIAEKNMEKLNHIEKSHEQLVLENSHFKKlLS 569
Cdd:pfam02463 629 lKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKE-QR 707
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767954680 570 QTQREQMSLLAACALMAGALYPLYSRScalSTQRDFLQEQVNTFELFKLEIRTlaQALSTVEEKKQEEAKMKK 642
Cdd:pfam02463 708 EKEELKKLKLEAEELLADRVQEAQDKI---NEELKLLKQKIDEEEEEEEKSRL--KKEEKEEEKSELSLKEKE 775
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
138-396 |
6.09e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 50.31 E-value: 6.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 138 LESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVESAyerekhnAQESFAKLNLLEKEYFSKNKKLNEd 217
Cdd:PRK05771 40 LSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEEL-------IKDVEEELEKIEKEIKELEEEISE- 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 218 IEEQKKVIIDLSKRLQYNEKSCSELQEELvmAKKH-QAFLVETCENNVKELESILDSFTVsgqwtSGIHKDKDKPPSFSV 296
Cdd:PRK05771 112 LENEIKELEQEIERLEPWGNFDLDLSLLL--GFKYvSVFVGTVPEDKLEELKLESDVENV-----EYISTDKGYVYVVVV 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 297 VLerlrrtltdyQNKLEDASNELNSmNDVKEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADreaLIS 376
Cdd:PRK05771 185 VL----------KELSDEVEEELKK-LGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLE---ELL 250
|
250 260
....*....|....*....|
gi 767954680 377 TLKVELQNvlhcwEKEKAQA 396
Cdd:PRK05771 251 ALYEYLEI-----ELERAEA 265
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
2-384 |
6.42e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.40 E-value: 6.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 2 IQNCNREYDLLMKEKSRLEKTLQeALEKHQREKNEMESHIretalEEFRLQEEQWEAERRELQFIVQEQDTAVQNMHKKV 81
Cdd:TIGR04523 182 KLNIQKNIDKIKNKLLKLELLLS-NLKKKIQKNKSLESQI-----SELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 82 EKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEatTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVE 161
Cdd:TIGR04523 256 NQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLN--QLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQN 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 162 KASQAEAVADLEIIKNEFKEVESAYEREKHNAQESFAKLNLLEKEyfskNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSE 241
Cdd:TIGR04523 334 NKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE----NQSYKQEIKNLESQINDLESKIQNQEKLNQQ 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 242 LQEELVMAKKhqaflvetcENNVKELESILDSFTVSGQwTSGIHKDKDKPPSFSVVLERLRRTLTDYQNKLEDASNELNS 321
Cdd:TIGR04523 410 KDEQIKKLQQ---------EKELLEKEIERLKETIIKN-NSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINK 479
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767954680 322 MNDVKEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELQN 384
Cdd:TIGR04523 480 IKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISD 542
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
821-992 |
7.99e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.32 E-value: 7.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 821 ASLQKQILGFTQRLHAAEVERRSLRLEVTEFKRSVNEMKKELDKAQGlqmQLNEFKQSKLITHEKFESACEELNNALLRE 900
Cdd:COG1196 242 EELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQA---EEYELLAELARLEQDIARLEERRRELEERL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 901 EQAQM----LLNEQA---QQLQELNYKLELHSSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRL 973
Cdd:COG1196 319 EELEEelaeLEEELEeleEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL 398
|
170
....*....|....*....
gi 767954680 974 EENIHDAESALRMAAKDKE 992
Cdd:COG1196 399 AAQLEELEEAEEALLERLE 417
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2-473 |
1.39e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 1.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 2 IQNCNREYDLLMKEKSRLEKTLQEALEKHQREKNEMESH--IRETALEEfrlQEEQWEAERRELQFIVQEQDTAVQNMH- 78
Cdd:COG4913 297 LEELRAELARLEAELERLEARLDALREELDELEAQIRGNggDRLEQLER---EIERLERELEERERRRARLEALLAALGl 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 79 -----------------KKVEKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEAttLRVRKLeeNIEAeraahlesk 141
Cdd:COG4913 374 plpasaeefaalraeaaALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIAS--LERRKS--NIPA--------- 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 142 fnsEIIQLRiRDLEGALQVeKASQAEAVADLEIIKNEFKEVESAYEREKHNaqesfAKLNLL-EKEYFSK-------NK- 212
Cdd:COG4913 441 ---RLLALR-DALAEALGL-DEAELPFVGELIEVRPEEERWRGAIERVLGG-----FALTLLvPPEHYAAalrwvnrLHl 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 213 -------KLNEDIEEQKKVIID---LSKRLQYNEKSCSE-LQEELvmakkHQAFLVETCEnNVKELESILDSFTVSGQ-- 279
Cdd:COG4913 511 rgrlvyeRVRTGLPDPERPRLDpdsLAGKLDFKPHPFRAwLEAEL-----GRRFDYVCVD-SPEELRRHPRAITRAGQvk 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 280 --WTSGIHKDKDKPPSFSVV--------------LERLRRTLTDYQNKLEDASNELNSMNDVKE--KACNELDSTKQKID 341
Cdd:COG4913 585 gnGTRHEKDDRRRIRSRYVLgfdnraklaaleaeLAELEEELAEAEERLEALEAELDALQERREalQRLAEYSWDEIDVA 664
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 342 SHTKNIKELQDKLADV---NKELSHLHTKCADREALISTLKVELQNVLHCWEKEKAQAAQSESELQKLSQAFHKDAEEKL 418
Cdd:COG4913 665 SAEREIAELEAELERLdasSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLAR 744
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 767954680 419 TFLHTLYQHLVAGCVLIKQPEGMLDKfswselcavLQENVDALIADLNRANEKIR 473
Cdd:COG4913 745 LELRALLEERFAAALGDAVERELREN---------LEERIDALRARLNRAEEELE 790
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
300-984 |
2.64e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.51 E-value: 2.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 300 RLRRTLTDYQnKLEDASNELnsmndvkEKACNELDSTKQKidshTKNIKELQDKLADVNKELSHLHTKCADREalISTLK 379
Cdd:TIGR02168 180 KLERTRENLD-RLEDILNEL-------ERQLKSLERQAEK----AERYKELKAELRELELALLVLRLEELREE--LEELQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 380 VELQNVLHCWEKEKAQAAQSESELQKLSQAFHKDAEEKLTFLHTLYQHLVagcvLIKQPEGMLdkfswselcAVLQENVD 459
Cdd:TIGR02168 246 EELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN----EISRLEQQK---------QILRERLA 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 460 ALIADLNRANEKIRHLEyickNKSDTMRE---LQQTQEDTFTKVAEQIKAQESCWHRQKKELELQYSELFLEVQKRAQKF 536
Cdd:TIGR02168 313 NLERQLEELEAQLEELE----SKLDELAEelaELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 537 QEI---AEKNMEKLNHIEKSHEQLvleNSHFKKLLSQTQREQMSLLAAcalmagALYPLYSRSCALSTQRDFLQEQVNTF 613
Cdd:TIGR02168 389 AQLelqIASLNNEIERLEARLERL---EDRRERLQQEIEELLKKLEEA------ELKELQAELEELEEELEELQEELERL 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 614 ELFKLEIRTLAQALSTVEEKKQEEAKMKKKTFKGLIRIFR------KGVIAVLA-ANRLKILGQSCASLFTWMESFK--- 683
Cdd:TIGR02168 460 EEALEELREELEEAEQALDAAERELAQLQARLDSLERLQEnlegfsEGVKALLKnQSGLSGILGVLSELISVDEGYEaai 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 684 -----EGIGMLVCTGEPQDKhkfpkhqkeqlrclQALSWLTSSDLLAAiisSMAELQDVIGKADPNSR---ICGHLLIGA 755
Cdd:TIGR02168 540 eaalgGRLQAVVVENLNAAK--------------KAIAFLKQNELGRV---TFLPLDSIKGTEIQGNDreiLKNIEGFLG 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 756 AKNSFAKLMDKISLVMEciPLHSSRSITyvekDSLVQ--RLAHGLHKVNTLALKYG---------LRGHVPITKSTASLQ 824
Cdd:TIGR02168 603 VAKDLVKFDPKLRKALS--YLLGGVLVV----DDLDNalELAKKLRPGYRIVTLDGdlvrpggviTGGSAKTNSSILERR 676
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 825 KQILGFTQRLHAAEVERRSLRLEVTEFKRSVNEMKKELDKAQ----GLQMQLNEFKQSKLITHEKFESACEELNNALLRE 900
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRkeleELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 901 EQAQMLLNEQAQQLQELNYKLELHSSEEADKNQ----------TLGEAVKSLSEAKMELRRKDQSLRQ-----------L 959
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAqieqlkeelkALREALDELRAELTLLNEEAANLRErleslerriaaT 836
|
730 740
....*....|....*....|....*
gi 767954680 960 NRHLTQLEQDKRRLEENIHDAESAL 984
Cdd:TIGR02168 837 ERRLEDLEEQIEELSEDIESLAAEI 861
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
845-1090 |
5.60e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.74 E-value: 5.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 845 RLE--VTEFKRSVNEMKKELDKAQGLQMQLNEFKQSKL-ITHEKFESACEELNNALLREEQAQMLLNEQAQQLQELNYKL 921
Cdd:TIGR02168 190 RLEdiLNELERQLKSLERQAEKAERYKELKAELRELELaLLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 922 ELHSSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIHDAESALRMAAKDkecvanhmrav 1001
Cdd:TIGR02168 270 EELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE----------- 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 1002 entLHKVRDQISLswSAASRNDFTLQLPKLHLETFAMEGLKGGPEvvacqamiksfmDVYQLASTRIMTLEKEMTSHRSH 1081
Cdd:TIGR02168 339 ---LAELEEKLEE--LKEELESLEAELEELEAELEELESRLEELE------------EQLETLRSKVAQLELQIASLNNE 401
|
....*....
gi 767954680 1082 IAALKSELH 1090
Cdd:TIGR02168 402 IERLEARLE 410
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
2-405 |
6.68e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.37 E-value: 6.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 2 IQNCNREYDLLMKEKSRLEKTLQEaLEKHQREKnemESHIRETALEEFRLQEEQWEAER-RELQFIVQEQDTAVQNMHKK 80
Cdd:PRK03918 240 IEELEKELESLEGSKRKLEEKIRE-LEERIEEL---KKEIEELEEKVKELKELKEKAEEyIKLSEFYEEYLDELREIEKR 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 81 VEKLETEhmdcSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEA-ERAAHLESKFNseiiqlRIRDLEGALQ 159
Cdd:PRK03918 316 LSRLEEE----INGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELyEEAKAKKEELE------RLKKRLTGLT 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 160 VEKasqaeavadleiIKNEFKEVESAYEREKHNAQESFAKLNLLEKEYFSKNKKLNE----------------------D 217
Cdd:PRK03918 386 PEK------------LEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEElkkakgkcpvcgrelteehrkeL 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 218 IEEQKKVIIDLSKRLQYNEKSCSELQEELV-----MAKKHQAFLVETCENNVKELESILDSFTvsgqwtsgihkdkdkpp 292
Cdd:PRK03918 454 LEEYTAELKRIEKELKEIEEKERKLRKELRelekvLKKESELIKLKELAEQLKELEEKLKKYN----------------- 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 293 sfsvvLERLRRTLTDYQnKLEDASNELNSMNDVKEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADR- 371
Cdd:PRK03918 517 -----LEELEKKAEEYE-KLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEEl 590
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 767954680 372 EALISTLK------VELQNVLHCWEKEKAQAAQSESELQK 405
Cdd:PRK03918 591 EERLKELEpfyneyLELKDAEKELEREEKELKKLEEELDK 630
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
7-403 |
9.50e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 9.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 7 REYDLLMKEKSRLEKTLQEALEKHQREKNEMESHIRETA--LEEFRLQEEQWEA-------ERRELQFIVQEQDTAVQNM 77
Cdd:PTZ00121 1483 KKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAkkADEAKKAEEAKKAdeakkaeEKKKADELKKAEELKKAEE 1562
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 78 HKKVEKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTL----RVRKLEE-NIEAE--RAAHLESKFNSEIIQLR 150
Cdd:PTZ00121 1563 KKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKmkaeEAKKAEEaKIKAEelKKAEEEKKKVEQLKKKE 1642
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 151 IRDLEGALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQESFAKLNLLEK-EYFSKNKKLNEDIEEQKKVIIDLS 229
Cdd:PTZ00121 1643 AEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEaEEAKKAEELKKKEAEEKKKAEELK 1722
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 230 KRLQYNEKSCSELQ-EELVMAKKHQAFLVETCENN-----VKELESILDSFTVSGQWTSGIHKDKDKPPSFSVVLERLRR 303
Cdd:PTZ00121 1723 KAEEENKIKAEEAKkEAEEDKKKAEEAKKDEEEKKkiahlKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKD 1802
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 304 TLTDYQNKLEDASNELNSMNDVKEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELQ 383
Cdd:PTZ00121 1803 IFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEE 1882
|
410 420
....*....|....*....|
gi 767954680 384 NVLHCWEKEKAQAAQSESEL 403
Cdd:PTZ00121 1883 EIEEADEIEKIDKDDIEREI 1902
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
24-245 |
1.16e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 24 QEALEKHQREKNEMESHIRETaleEFRLQEEQweAERRELQFIVQEQDTAVQNMHKKVEKLETEhmdcsdlLRRQTSELE 103
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAEL---EKELAALK--KEEKALLKQLAALERRIAALARRIRALEQE-------LAALEAELA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 104 FSTQREERLRKEFEATTLRVRKLEENIE-AERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAvADLEIIKNEFKEV 182
Cdd:COG4942 87 ELEKEIAELRAELEAQKEELAELLRALYrLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQA-EELRADLAELAAL 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767954680 183 ESAYEREKhnaqesfAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEE 245
Cdd:COG4942 166 RAELEAER-------AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
7-206 |
1.41e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 46.27 E-value: 1.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 7 REYDLLMKEKSRLEKTLQEALEKHQREKNEMESHIRETALEEFRlqEEQWEAERRELQFIVQEQDTAVQNMHKKVEK--- 83
Cdd:pfam17380 368 EEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEER--QRKIQQQKVEMEQIRAEQEEARQREVRRLEEera 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 84 LETEHMDCSDLLRRQTSELeFSTQREERLRKEFE----------ATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRD 153
Cdd:pfam17380 446 REMERVRLEEQERQQQVER-LRQQEEERKRKKLElekekrdrkrAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEE 524
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 767954680 154 LEGALQVEkasQAEAVADLEIIKNEFKEVESAYEREKHNAQESFAKLNLLEKE 206
Cdd:pfam17380 525 RQKAIYEE---ERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMERE 574
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
857-1027 |
2.88e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.31 E-value: 2.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 857 EMKKELD--KAQGLQMQLNEFKQSKLITHEKFESACEELNNALLREEQAQMLLNEQAQQLQELNYKLELHSSEEADKNQT 934
Cdd:COG1196 217 ELKEELKelEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 935 LGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIHDAESALRMAAKDKECVANHMRAVENTLHKV---RDQ 1011
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAeaeLAE 376
|
170
....*....|....*.
gi 767954680 1012 ISLSWSAASRNDFTLQ 1027
Cdd:COG1196 377 AEEELEELAEELLEAL 392
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
12-246 |
3.31e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 3.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 12 LMKEKSRLEKTLQEALEkHQREKNEMESHIRET-----ALEEFRLQEEQWEAERRELQFIVQEQDTA-VQNMHKKVEKLE 85
Cdd:COG4913 216 YMLEEPDTFEAADALVE-HFDDLERAHEALEDAreqieLLEPIRELAERYAAARERLAELEYLRAALrLWFAQRRLELLE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 86 TEhmdcsdlLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESkfnseiIQLRIRDLEGALQVEKASQ 165
Cdd:COG4913 295 AE-------LEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQ------LEREIERLERELEERERRR 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 166 AEAVADLEIIKNEFKEVESAYEREKHNAQESFAKLNLLEKEyfsknkkLNEDIEEQKKVIIDLSKRLQynekscsELQEE 245
Cdd:COG4913 362 ARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEA-------LEEALAEAEAALRDLRRELR-------ELEAE 427
|
.
gi 767954680 246 L 246
Cdd:COG4913 428 I 428
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
291-509 |
3.55e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 3.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 291 PPSFSVVLERLRRTLTDYQNKLEDASNELNSMNDVKEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCAD 370
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 371 REALISTLKVELQNVLhcwekEKAQAAQSESELQ-KLSQAFHKDAEEKLTFLHTLYQHLVAgcvLIKQPEGMLDKFswSE 449
Cdd:COG4942 95 LRAELEAQKEELAELL-----RALYRLGRQPPLAlLLSPEDFLDAVRRLQYLKYLAPARRE---QAEELRADLAEL--AA 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 450 LCAVLQENVDALIADLNRANEKIRHLEYICKNKSDTMRELQQTQEDTFTKVAEQIKAQES 509
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE 224
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
14-251 |
3.75e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.63 E-value: 3.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 14 KEKSRLEKTLQEALEKHQREKNEMESHIretalEEFRLQEEQWEAERRELQFIVQEQDTAVQNMHKKVEKLETEHMDCSD 93
Cdd:TIGR04523 401 QNQEKLNQQKDEQIKKLQQEKELLEKEI-----ERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSR 475
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 94 LLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIeaeraahleSKFNSEIIQLRIRdlEGALQVEKASQAEAVADLE 173
Cdd:TIGR04523 476 SINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKV---------KDLTKKISSLKEK--IEKLESEKKEKESKISDLE 544
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 174 --IIKNEFKEVESAYEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKK 251
Cdd:TIGR04523 545 deLNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKK 624
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
15-407 |
5.60e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.33 E-value: 5.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 15 EKSRLEK--TLQEALEKHQREKNEMESHI--RETALEEFRLQEEQWEAERRELQFIVQEQDTAVQNMHKKVeKLETEHMD 90
Cdd:pfam05483 207 ENARLEMhfKLKEDHEKIQHLEEEYKKEIndKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKT-KLQDENLK 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 91 CS----DLLRRQTSELEFSTQR----EERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIR----DLEGAL 158
Cdd:pfam05483 286 ELiekkDHLTKELEDIKMSLQRsmstQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEattcSLEELL 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 159 QVEKASQAEAVADLEIIKNEFKEVESAYE---REKHNAQESFAKLN--LLEKE-YFSKNKKLNEDIEEQKKVIIDLSKRL 232
Cdd:pfam05483 366 RTEQQRLEKNEDQLKIITMELQKKSSELEemtKFKNNKEVELEELKkiLAEDEkLLDEKKQFEKIAEELKGKEQELIFLL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 233 QYNEKSCSELQEELVMAKKHQAFLVETCENNVKELES---------------ILDSFTVSGQWTSGIHKDKDKPPSFSVV 297
Cdd:pfam05483 446 QAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKeklknieltahcdklLLENKELTQEASDMTLELKKHQEDIINC 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 298 LERLRRTLTDYQNKLEDASNELNSMNDVKEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADreaLIST 377
Cdd:pfam05483 526 KKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNN---LKKQ 602
|
410 420 430
....*....|....*....|....*....|
gi 767954680 378 LKVELQNVLHCWEKEKAQAAQSESELQKLS 407
Cdd:pfam05483 603 IENKNKNIEELHQENKALKKKGSAENKQLN 632
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
301-577 |
5.65e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 5.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 301 LRRTLTDYQNKLEDASNELNSMNDVK-------EKACNELDSTKQKIDShTKNIKElqDKLADVNKELSHLHTKCADREA 373
Cdd:pfam15921 108 LRQSVIDLQTKLQEMQMERDAMADIRrresqsqEDLRNQLQNTVHELEA-AKCLKE--DMLEDSNTQIEQLRKMMLSHEG 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 374 LIStlkvELQNVLHCWEKEKAQAAQSESELQKLS-QAFHKDAEEKLTFLHTLYQHLVAGCVLIKQPEGMLDKFSWSELCA 452
Cdd:pfam15921 185 VLQ----EIRSILVDFEEASGKKIYEHDSMSTMHfRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIEL 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 453 VLQENVDALIADLNRANEKIRHLeyicKNKSDTMRELQQTQEDTFTKVAEQIKAQESCWHRQKKELELQYSELFLEVQKR 532
Cdd:pfam15921 261 LLQQHQDRIEQLISEHEVEITGL----TEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREA 336
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 767954680 533 AQKFQEiaeknmeklnHIEKSHEQLVLENSHFKKllSQTQREQMS 577
Cdd:pfam15921 337 KRMYED----------KIEELEKQLVLANSELTE--ARTERDQFS 369
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
7-572 |
5.72e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.36 E-value: 5.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 7 REYDLLMKEKSRLEKTLQEALEKHQREKNEMESHIRETALEEfrlqeeqwEAERRELQFIVQEQDTAVQNMHKKVEKLET 86
Cdd:PTZ00121 1077 KDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAE--------EAKKKAEDARKAEEARKAEDARKAEEARKA 1148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 87 EHMDCSDLLRR--QTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEiiqlRIRDLEGALQVEKAS 164
Cdd:PTZ00121 1149 EDAKRVEIARKaeDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAE----EERKAEEARKAEDAK 1224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 165 QAEAVADLEIIKnefKEVESAYEREKHNAQESFAKLNLLEKEYFSKN---------------------KKLNEDIEEQKK 223
Cdd:PTZ00121 1225 KAEAVKKAEEAK---KDAEEAKKAEEERNNEEIRKFEEARMAHFARRqaaikaeearkadelkkaeekKKADEAKKAEEK 1301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 224 VIIDLSKRLQYNEKSCSELQEELVMAKKHQAFLVETCENNVKELESildSFTVSGQWTSGIHKDKDKPPSFSVVLERLRR 303
Cdd:PTZ00121 1302 KKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEA---AKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 304 TLTDYQNKLEDA--SNELNSMNDVKEKACNELdstkQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVE 381
Cdd:PTZ00121 1379 KADAAKKKAEEKkkADEAKKKAEEDKKKADEL----KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAE 1454
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 382 lqnvlhcwEKEKAQAAQSESELQKLSQAFHKDAEEKLTFLHtlyqhlvagcvLIKQPEGMLDKFSWSELCAVLQENVDal 461
Cdd:PTZ00121 1455 --------EAKKAEEAKKKAEEAKKADEAKKKAEEAKKADE-----------AKKKAEEAKKKADEAKKAAEAKKKAD-- 1513
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 462 iaDLNRANEkirhleyicKNKSDTMRELQQTQEDTFTKVAEQIKAQESCwhRQKKELELQYSELFLEVQKRAQKFQEIAE 541
Cdd:PTZ00121 1514 --EAKKAEE---------AKKADEAKKAEEAKKADEAKKAEEKKKADEL--KKAEELKKAEEKKKAEEAKKAEEDKNMAL 1580
|
570 580 590
....*....|....*....|....*....|.
gi 767954680 542 KNMEKLNHIEKSHEQLVLENSHFKKLLSQTQ 572
Cdd:PTZ00121 1581 RKAEEAKKAEEARIEEVMKLYEEEKKMKAEE 1611
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
833-992 |
7.64e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.77 E-value: 7.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 833 RLHAAEVERRSLRLEVTEFKRSVNEMKKELDKAQ----GLQMQLNEFKQSKLITHEKFESACEELNNALLREEQAQMLLN 908
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEaelaELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 909 EQAQQLQELNYKLELHSSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIHDAESALRMAA 988
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA 385
|
....
gi 767954680 989 KDKE 992
Cdd:COG1196 386 EELL 389
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2-389 |
9.36e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 9.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 2 IQNCNREYDLLMKEKSRLEKTLQEALEKHQREKNEMESHIRETALEEFRLQEEQWEAERRELQFIVQEQDTAVQNMHKKV 81
Cdd:COG4717 97 LEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQ 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 82 EKLETEHMDCS----DLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGA 157
Cdd:COG4717 177 EELEELLEQLSlateEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAA 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 158 LQVEKASQAEAVADLEIIKNEF--------KEVESAYEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLS 229
Cdd:COG4717 257 ALLALLGLGGSLLSLILTIAGVlflvlgllALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSP 336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 230 KRLQYNEKSCSELQEELVMAKKHQAFLveTCENNVKELESILDSFTVSG--QWTSGIHKDKDKppsfsvvlERLRRTLTD 307
Cdd:COG4717 337 EELLELLDRIEELQELLREAEELEEEL--QLEELEQEIAALLAEAGVEDeeELRAALEQAEEY--------QELKEELEE 406
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 308 YQNKLEDASNELNSMNDV--KEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHT--KCADREALISTLKVELQ 383
Cdd:COG4717 407 LEEQLEELLGELEELLEAldEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEdgELAELLQELEELKAELR 486
|
....*.
gi 767954680 384 NVLHCW 389
Cdd:COG4717 487 ELAEEW 492
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
827-992 |
1.01e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 827 ILGFT--QRLHAAEVERRSLRLEVTEFKRSVNEMKKELDKAQGLQMQLnefkqsklithekfeSACEELNNALLREEQAQ 904
Cdd:COG4913 603 VLGFDnrAKLAALEAELAELEEELAEAEERLEALEAELDALQERREAL---------------QRLAEYSWDEIDVASAE 667
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 905 MLLNEQAQQLQELnyklelhsseEADkNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIHDAESAL 984
Cdd:COG4913 668 REIAELEAELERL----------DAS-SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRL 736
|
....*...
gi 767954680 985 RMAAKDKE 992
Cdd:COG4913 737 EAAEDLAR 744
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
12-258 |
1.11e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 12 LMKEKSRLEKTLQE-----ALEKHQREKNEMESHIRETALEEFRLQEEQWEAERRELQFIVQEQDTaVQNMHKKVEKLET 86
Cdd:PRK03918 478 LRKELRELEKVLKKeseliKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKS-LKKELEKLEELKK 556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 87 EHMDCSDLLRRQTSEL-EFSTQREERLRKEFEATTLRVRKLEEnIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQ 165
Cdd:PRK03918 557 KLAELEKKLDELEEELaELLKELEELGFESVEELEERLKELEP-FYNEYLELKDAEKELEREEKELKKLEEELDKAFEEL 635
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 166 AEAVADLEIIKNEFKEVESAYEREKH-NAQESFAKlnlLEKEYFSKNKKLnEDIEEQKKVIIDLSKRLQYNEKSCSELQE 244
Cdd:PRK03918 636 AETEKRLEELRKELEELEKKYSEEEYeELREEYLE---LSRELAGLRAEL-EELEKRREEIKKTLEKLKEELEEREKAKK 711
|
250
....*....|....
gi 767954680 245 ELVMAKKHQAFLVE 258
Cdd:PRK03918 712 ELEKLEKALERVEE 725
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
821-977 |
1.36e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 821 ASLQKQILGFTQRLHAAEVERRSLRLEVTEFKRSVNEMKKELDKAQGLQMQLNEFKQSKLITHEkfesaceelnnallrE 900
Cdd:COG1579 34 AELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYEALQKE---------------I 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767954680 901 EQAQMLLNEQAQQLQELNYKLELHSSEEADKNQTLGEAVKSLSEAKMELrrkDQSLRQLNRHLTQLEQDKRRLEENI 977
Cdd:COG1579 99 ESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAEL---DEELAELEAELEELEAEREELAAKI 172
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
10-232 |
1.63e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.90 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 10 DLLMKEKSRLEKTLQEALEKHQREKNEM------------ESHIRETALEEFRLQEEQWEAERRELQFIVQEQDTA---- 73
Cdd:pfam12128 600 EELRERLDKAEEALQSAREKQAAAEEQLvqangelekasrEETFARTALKNARLDLRRLFDEKQSEKDKKNKALAErkds 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 74 ----VQNMHKKVEKLETEHMDCSDLLRRQTSELefSTQREERLRKEFEATTLRVRKLEENIEAERAAHleSKFNSEIIQL 149
Cdd:pfam12128 680 anerLNSLEAQLKQLDKKHQAWLEEQKEQKREA--RTEKQAYWQVVEGALDAQLALLKAAIAARRSGA--KAELKALETW 755
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 150 RIRDLEGalqveKASQAEAVADLeiiKNEFKEVESAYEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLS 229
Cdd:pfam12128 756 YKRDLAS-----LGVDPDVIAKL---KREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQ 827
|
...
gi 767954680 230 KRL 232
Cdd:pfam12128 828 QQL 830
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
114-405 |
1.66e-03 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 42.32 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 114 KEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLE------------GALQVEKASQAEAVADLEIIKNEFKE 181
Cdd:pfam05701 70 EELESTKRLIEELKLNLERAQTEEAQAKQDSELAKLRVEEMEqgiadeasvaakAQLEVAKARHAAAVAELKSVKEELES 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 182 VESAY-----ERE--KHNAQESFAKLNLLEKEYFSKNKKLNE-------------DIEEQK--------KVIIDLSKRLQ 233
Cdd:pfam05701 150 LRKEYaslvsERDiaIKRAEEAVSASKEIEKTVEELTIELIAtkeslesahaahlEAEEHRigaalareQDKLNWEKELK 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 234 YNEKSCSELQEELVMAKKHQAFLvETCENNVKELESILDSFTVS--GQWTSGIHKDKDKPPSFSVVLERLRRTLTDYQNK 311
Cdd:pfam05701 230 QAEEELQRLNQQLLSAKDLKSKL-ETASALLLDLKAELAAYMESklKEEADGEGNEKKTSTSIQAALASAKKELEEVKAN 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 312 LEDASNELNSMNDV---------KEKAcnELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVEL 382
Cdd:pfam05701 309 IEKAKDEVNCLRVAaaslrseleKEKA--ELASLRQREGMASIAVSSLEAELNRTKSEIALVQAKEKEAREKMVELPKQL 386
|
330 340
....*....|....*....|...
gi 767954680 383 QNVLHCWEKEKAQAAQSESELQK 405
Cdd:pfam05701 387 QQAAQEAEEAKSLAQAAREELRK 409
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
818-984 |
1.72e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.59 E-value: 1.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 818 KSTASLQKQILGFTQRLhaaeverRSLRLEVTEFKRSVNEMKKE----LDKAQgLQMQLNEfkqskliTHEKFESACEEL 893
Cdd:PRK11281 80 EETEQLKQQLAQAPAKL-------RQAQAELEALKDDNDEETREtlstLSLRQ-LESRLAQ-------TLDQLQNAQNDL 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 894 N--NALL-----REEQAQMLLNEQAQQLQELNykLELHSSEEADKN-----QTLGEAVKSLSEAKMELRRKD-------Q 954
Cdd:PRK11281 145 AeyNSQLvslqtQPERAQAALYANSQRLQQIR--NLLKGGKVGGKAlrpsqRVLLQAEQALLNAQNDLQRKSlegntqlQ 222
|
170 180 190
....*....|....*....|....*....|
gi 767954680 955 SLRQLNRHLTQLEQDkrRLEENIHDAESAL 984
Cdd:PRK11281 223 DLLQKQRDYLTARIQ--RLEHQLQLLQEAI 250
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
816-989 |
1.74e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 816 ITKSTASLQKQILGFTQRLHAAEVERRSLRLEVTEFKRSVNEMKKELDKAQG-LQMQLNEFKQSKLITHEKFESACEELN 894
Cdd:COG4942 53 LLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEeLAELLRALYRLGRQPPLALLLSPEDFL 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 895 ---------NALLREEQAQML-LNEQAQQLQELNYKLELHSSEEADKNQTLGEAVKSLSEAKME----LRRKDQSLRQLN 960
Cdd:COG4942 133 davrrlqylKYLAPARREQAEeLRADLAELAALRAELEAERAELEALLAELEEERAALEALKAErqklLARLEKELAELA 212
|
170 180
....*....|....*....|....*....
gi 767954680 961 RHLTQLEQDKRRLEENIHDAESALRMAAK 989
Cdd:COG4942 213 AELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
837-1013 |
1.87e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 1.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 837 AEVERRSLRLEvtEFKRSVNEMKKELDKAQGLqmqLNEFKQSKLITHEKFESACEELNNALLREEQAQMLLNEQAQQLQE 916
Cdd:TIGR02169 674 AELQRLRERLE--GLKRELSSLQSELRRIENR---LDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 917 LNYKLELHSSEEADKNQTLGEAVKSLSEAKMEL-----RRKDQSLRQLNRHLTQLEQDKRRLEENIHDAESALRMAAKDK 991
Cdd:TIGR02169 749 LEQEIENVKSELKELEARIEELEEDLHKLEEALndleaRLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEK 828
|
170 180
....*....|....*....|..
gi 767954680 992 ECVANHMRAVENTLHKVRDQIS 1013
Cdd:TIGR02169 829 EYLEKEIQELQEQRIDLKEQIK 850
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
156-409 |
1.98e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 1.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 156 GALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQESFAKLNLLEKEYfsknKKLNEDIEEQKKVIIDLSKRLQYN 235
Cdd:COG3883 2 LALALAAPTPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEY----NELQAELEALQAEIDKLQAEIAEA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 236 EKSCSELQEELvmakKHQAFLVETCENNVKELESILDSftvsgqwtsgihkdkdkpPSFSVVLERL--RRTLTDYQNKLe 313
Cdd:COG3883 78 EAEIEERREEL----GERARALYRSGGSVSYLDVLLGS------------------ESFSDFLDRLsaLSKIADADADL- 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 314 dasneLNSMNDVKEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELshlhtkcADREALISTLKVELQNVLHCWEKEK 393
Cdd:COG3883 135 -----LEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQ-------AEQEALLAQLSAEEAAAEAQLAELE 202
|
250
....*....|....*.
gi 767954680 394 AQAAQSESELQKLSQA 409
Cdd:COG3883 203 AELAAAEAAAAAAAAA 218
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
15-361 |
2.42e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 42.04 E-value: 2.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 15 EKSRLEKTLQEALEKHQREKNEMESHIRETALE-EFRLQEEQWEAERRELQFIVQ------------EQDTAVQNMHKKV 81
Cdd:pfam05557 76 ELNRLKKKYLEALNKKLNEKESQLADAREVISClKNELSELRRQIQRAELELQSTnseleelqerldLLKAKASEAEQLR 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 82 EKLETEHMDCSDlLRRQTSELEFSTQREER---LRKEFEATTLRVRKLEENIEA--ERAAHL-ESKFNSEIIQLRIRDLE 155
Cdd:pfam05557 156 QNLEKQQSSLAE-AEQRIKELEFEIQSQEQdseIVKNSKSELARIPELEKELERlrEHNKHLnENIENKLLLKEEVEDLK 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 156 GALQVEKASQAEAVA---DLEIIKNEFKEVESAYEREKHNAQESFA-----------KLNLLEKEYFSKN---------K 212
Cdd:pfam05557 235 RKLEREEKYREEAATlelEKEKLEQELQSWVKLAQDTGLNLRSPEDlsrrieqlqqrEIVLKEENSSLTSsarqlekarR 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 213 KLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKKHQAFLVETCENNVKELESILDSFTVSGQWTSG---IHKDKD 289
Cdd:pfam05557 315 ELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILESYDKELTMSNYSPQLLERIEEAedmTQKMQA 394
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767954680 290 KPPSFSVVLERLRRTLTDYQNKLEDASNELNSMNdvKEKACNELDSTKQKIDSHTKNIKELQ---DKLADVNKEL 361
Cdd:pfam05557 395 HNEEMEAQLSVAEEELGGYKQQAQTLERELQALR--QQESLADPSYSKEEVDSLRRKLETLElerQRLREQKNEL 467
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
12-388 |
2.68e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.96 E-value: 2.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 12 LMKEKSRLEKTLQEALEKHQREKNEMESHIRetaleefrLQEEQWEAERRELQFIVQEQDTAVQNMHKKVEKLETEHMDC 91
Cdd:TIGR00606 413 LCADLQSKERLKQEQADEIRDEKKGLGRTIE--------LKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAE 484
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 92 SDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQL-------RIRDLEGALQVEKAS 164
Cdd:TIGR00606 485 RELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKdkmdkdeQIRKIKSRHSDELTS 564
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 165 QAEAVADLEIIKNEFKEVEsayeREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRL------QYNEKS 238
Cdd:TIGR00606 565 LLGYFPNKKQLEDWLHSKS----KEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLfdvcgsQDEESD 640
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 239 CSELQEELVMAKKHQAFLVETCENNVKELESILDSFTVSGQWTSGIHKDKDKPPSFSVVLERLRRTLTDyqnKLEDASNE 318
Cdd:TIGR00606 641 LERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPD---KLKSTESE 717
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 319 LNSMNDVKEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELQNVLHC 388
Cdd:TIGR00606 718 LKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVC 787
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
171-360 |
2.72e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 42.35 E-value: 2.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 171 DLEIIKNEFKEVESAYEREkhnAQESFAKLNLLEKEYF------SKNKKLNedieeqkKVIIDLSKRLQYNEKSCSELQE 244
Cdd:TIGR01612 1545 DSEIIIKEIKDAHKKFILE---AEKSEQKIKEIKKEKFrieddaAKNDKSN-------KAAIDIQLSLENFENKFLKISD 1614
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 245 elvMAKKHQAFLVETcennvKELESILDSFTVSGQWTSgIHKDKDKPPSFSVVLERLRrtltDYQNKLEDASNELNSMNd 324
Cdd:TIGR01612 1615 ---IKKKINDCLKET-----ESIEKKISSFSIDSQDTE-LKENGDNLNSLQEFLESLK----DQKKNIEDKKKELDELD- 1680
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 767954680 325 vkekacNELDSTKQKIDSHTKN----IKELQDKLADVNKE 360
Cdd:TIGR01612 1681 ------SEIEKIEIDVDQHKKNyeigIIEKIKEIAIANKE 1714
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
13-408 |
2.81e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.02 E-value: 2.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 13 MKEKSRLE-KTLQEALEKHQREKNEMEShIRETALEEFRLQ---EEQWEAERRELQFIVQEQDTAVQNMHKK-------V 81
Cdd:pfam05483 273 LEEKTKLQdENLKELIEKKDHLTKELED-IKMSLQRSMSTQkalEEDLQIATKTICQLTEEKEAQMEELNKAkaahsfvV 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 82 EKLETEHMDCSDLLRRQTselefstQREERLRKEFEATTLRVRKleENIEAERAAHLESKFNSEIIQLRIRDLEGALQVE 161
Cdd:pfam05483 352 TEFEATTCSLEELLRTEQ-------QRLEKNEDQLKIITMELQK--KSSELEEMTKFKNNKEVELEELKKILAEDEKLLD 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 162 KASQAEAVAD-LEIIKNEFKEVESAYEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLS----KRLQYNE 236
Cdd:pfam05483 423 EKKQFEKIAEeLKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTahcdKLLLENK 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 237 KSCSELQEELVMAKKHQaflvETCENNVKELESILDsftvsgQWTSGIHKDKDKPPSFSVVLERLRRTLTDYQNKLEDAS 316
Cdd:pfam05483 503 ELTQEASDMTLELKKHQ----EDIINCKKQEERMLK------QIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSE 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 317 NELNSMN----------DVKEKACNELdstKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELQNVL 386
Cdd:pfam05483 573 ENARSIEyevlkkekqmKILENKCNNL---KKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAK 649
|
410 420
....*....|....*....|..
gi 767954680 387 HCWEkEKAQAAQSESELQKLSQ 408
Cdd:pfam05483 650 QKFE-EIIDNYQKEIEDKKISE 670
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
68-251 |
2.98e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.35 E-value: 2.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 68 QEQDTAVQNMHKKVEKLETEhmdcsdlLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAhLESKfnSEII 147
Cdd:COG3883 19 QAKQKELSELQAELEAAQAE-------LDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAE-IEER--REEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 148 QLRIRDL------EGALQV--------EKASQAEAV-----ADLEIIkNEFKEVESAYEREKHNAQESFAKLNLLEKEYF 208
Cdd:COG3883 89 GERARALyrsggsVSYLDVllgsesfsDFLDRLSALskiadADADLL-EELKADKAELEAKKAELEAKLAELEALKAELE 167
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 767954680 209 SKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKK 251
Cdd:COG3883 168 AAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEA 210
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
821-1013 |
4.51e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 4.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 821 ASLQKQILGFTQRLHAAEVERRSLRLEVTEFKRSVNEMKKELDKAQGlQMQLNEFKQSKLITHEkfesacEELNNAL--L 898
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQ-ELAALEAELAELEKEI------AELRAELeaQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 899 REEQAQMLLneQAQQLQELNYKLELHSSEEADKNQTLGEAVKSLSEAkmelrRKDQsLRQLNRHLTQLEQDKRRLEENIH 978
Cdd:COG4942 103 KEELAELLR--ALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPA-----RREQ-AEELRADLAELAALRAELEAERA 174
|
170 180 190
....*....|....*....|....*....|....*
gi 767954680 979 DAESALRMAAKDKECVANHMRAVENTLHKVRDQIS 1013
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELA 209
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
6-362 |
5.05e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 5.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 6 NREYDLLMKEKSRLEKTLQ------EALEKHQREKNEMESHIRETALEEFRLQEEQWEAERRELQF-IVQEQDTAVQNMH 78
Cdd:PRK03918 299 SEFYEEYLDELREIEKRLSrleeeiNGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYeEAKAKKEELERLK 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 79 KKVEKLETEHMDcsdllrrqtSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDL---- 154
Cdd:PRK03918 379 KRLTGLTPEKLE---------KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELteeh 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 155 ------EGALQVEKASQ--AEAVADLEIIKNEFKEVESAYEREKH------------NAQESFAKLNLLEKEyfsknkKL 214
Cdd:PRK03918 450 rkelleEYTAELKRIEKelKEIEEKERKLRKELRELEKVLKKESEliklkelaeqlkELEEKLKKYNLEELE------KK 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 215 NEDIEEQKKVIIDLSKRLQYNEKSCSELQEelvmAKKHQAFLVETCENNVKELESILDSFTVSGQwtsgihkdkdkpPSF 294
Cdd:PRK03918 524 AEEYEKLKEKLIKLKGEIKSLKKELEKLEE----LKKKLAELEKKLDELEEELAELLKELEELGF------------ESV 587
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 295 SVVLERLRRTLTDYQ--NKLEDASNELNSMNDVKEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELS 362
Cdd:PRK03918 588 EELEERLKELEPFYNeyLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS 657
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
19-545 |
5.06e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.26 E-value: 5.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 19 LEKTLQEALEKHQREKnemeSHIRETALE-EFRLQEEQWEAE------RRElqfiVQEQDTAVQNMHKKVEKLETEHMDC 91
Cdd:pfam15921 90 LQRRLNESNELHEKQK----FYLRQSVIDlQTKLQEMQMERDamadirRRE----SQSQEDLRNQLQNTVHELEAAKCLK 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 92 SDLLRRQTSELEfstqreeRLRK---EFEATTLRVRKLEenIEAERAAHLESKFNSEIIQLRIRDLEGALqvekaSQAEA 168
Cdd:pfam15921 162 EDMLEDSNTQIE-------QLRKmmlSHEGVLQEIRSIL--VDFEEASGKKIYEHDSMSTMHFRSLGSAI-----SKILR 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 169 VADLEI--IKNEFKEVESAYEREKHNAQEsfaKLNLLEKEYFSKNKKLnedIEEQKKVIIDLSKRLQYNEKSCSELQEEL 246
Cdd:pfam15921 228 ELDTEIsyLKGRIFPVEDQLEALKSESQN---KIELLLQQHQDRIEQL---ISEHEVEITGLTEKASSARSQANSIQSQL 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 247 VMAKKHQAFLVETCENNVKELESildsftvsgqwtsgihkdkdkppSFSVVLERLRRTLTDYQNKLEDASNELNSMNDVK 326
Cdd:pfam15921 302 EIIQEQARNQNSMYMRQLSDLES-----------------------TVSQLRSELREAKRMYEDKIEELEKQLVLANSEL 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 327 EKACNELDSTKQKIDSHTKNIKELQDKLADVNKELS---------------------HLHTKCADR-------EALISTL 378
Cdd:pfam15921 359 TEARTERDQFSQESGNLDDQLQKLLADLHKREKELSlekeqnkrlwdrdtgnsitidHLRRELDDRnmevqrlEALLKAM 438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 379 KVELQNVLhcwEKEKAQAAQSESELQKLSqAFHKDAEEKLTFLHTLYQHLVAGCVLIKQPEGMLdkfswSELCAVLQEN- 457
Cdd:pfam15921 439 KSECQGQM---ERQMAAIQGKNESLEKVS-SLTAQLESTKEMLRKVVEELTAKKMTLESSERTV-----SDLTASLQEKe 509
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 458 --VDALIADL----NRANEKIRHLEYIcKNKSDTMRELQQTQEDTFTKVAEQIKAQESCWHRQKKELEL--QYSELFLEV 529
Cdd:pfam15921 510 raIEATNAEItklrSRVDLKLQELQHL-KNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLvgQHGRTAGAM 588
|
570
....*....|....*..
gi 767954680 530 Q-KRAQKFQEIAEKNME 545
Cdd:pfam15921 589 QvEKAQLEKEINDRRLE 605
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
8-410 |
6.04e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.87 E-value: 6.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 8 EYDLLMKEKSRLEKTLQEAL-EKHQREKN---EMES----------------HIR----ETALEEFRLqEEQWEAERREL 63
Cdd:pfam15921 364 ERDQFSQESGNLDDQLQKLLaDLHKREKElslEKEQnkrlwdrdtgnsitidHLRreldDRNMEVQRL-EALLKAMKSEC 442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 64 QFIVQEQDTAVQNMHKKVEK---LETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERA--AHL 138
Cdd:pfam15921 443 QGQMERQMAAIQGKNESLEKvssLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAeiTKL 522
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 139 ESKFNSEIIQLR--------IRDLEGALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQESFAKLNLLEKEYFSK 210
Cdd:pfam15921 523 RSRVDLKLQELQhlknegdhLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDR 602
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 211 NKKLNE-DIEEQKKviidlSKRLQYNEKSCSELQEELVMAKKHQAFLVETCENNVKELESILDSFTVSGQWTSGIHKD-- 287
Cdd:pfam15921 603 RLELQEfKILKDKK-----DAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDye 677
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 288 ------KDKPPSFSVVLERLRRTLTDYQNKLEDASNELNSMNDVKEKAC-------NELDSTKQKIDSHTKNIKELQDKL 354
Cdd:pfam15921 678 vlkrnfRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMkvamgmqKQITAKRGQIDALQSKIQFLEEAM 757
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767954680 355 ADVNKELSHLHTKCADREALISTLKVELQN------VLHCWEKE-KAQAAQSESELQKLSQAF 410
Cdd:pfam15921 758 TNANKEKHFLKEEKNKLSQELSTVATEKNKmageleVLRSQERRlKEKVANMEVALDKASLQF 820
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
842-976 |
6.25e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.77 E-value: 6.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767954680 842 RSLRLEVTEFKRSVNEMKKELDKAQ----GLQMQLNEFKQSKLITHEKFESACEELNNALLREEQAQMLLNEQAQQLQEL 917
Cdd:TIGR04523 214 KSLESQISELKKQNNQLKDNIEKKQqeinEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQL 293
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767954680 918 NYKLE-LHSSEEADKNQTLGEAVKS----LSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEEN 976
Cdd:TIGR04523 294 KSEISdLNNQKEQDWNKELKSELKNqekkLEEIQNQISQNNKIISQLNEQISQLKKELTNSESE 357
|
|
| |
