protein O-mannosyl-transferase TMTC4 isoform X1 [Homo sapiens]
DUF1736 and TPR domain-containing protein( domain architecture ID 12091460)
DUF1736 and TPR domain-containing protein
List of domain hits
Name | Accession | Description | Interval | E-value | |||||
DUF1736 | pfam08409 | Domain of unknown function (DUF1736); This domain of unknown function is found in various ... |
369-443 | 4.16e-39 | |||||
Domain of unknown function (DUF1736); This domain of unknown function is found in various hypothetical metazoan proteins. : Pssm-ID: 429980 Cd Length: 75 Bit Score: 138.82 E-value: 4.16e-39
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TPR | COG0457 | Tetratricopeptide (TPR) repeat [General function prediction only]; |
558-794 | 4.22e-21 | |||||
Tetratricopeptide (TPR) repeat [General function prediction only]; : Pssm-ID: 223533 [Multi-domain] Cd Length: 291 Bit Score: 94.53 E-value: 4.22e-21
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Name | Accession | Description | Interval | E-value | |||||
DUF1736 | pfam08409 | Domain of unknown function (DUF1736); This domain of unknown function is found in various ... |
369-443 | 4.16e-39 | |||||
Domain of unknown function (DUF1736); This domain of unknown function is found in various hypothetical metazoan proteins. Pssm-ID: 429980 Cd Length: 75 Bit Score: 138.82 E-value: 4.16e-39
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TPR | COG0457 | Tetratricopeptide (TPR) repeat [General function prediction only]; |
558-794 | 4.22e-21 | |||||
Tetratricopeptide (TPR) repeat [General function prediction only]; Pssm-ID: 223533 [Multi-domain] Cd Length: 291 Bit Score: 94.53 E-value: 4.22e-21
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PEP_TPR_lipo | TIGR02917 | putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
546-794 | 1.31e-15 | |||||
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 81.28 E-value: 1.31e-15
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C39_PA2778_fam | NF033920 | PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ... |
573-655 | 5.35e-09 | |||||
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2). Pssm-ID: 411481 [Multi-domain] Cd Length: 255 Bit Score: 57.56 E-value: 5.35e-09
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TPR_19 | pfam14559 | Tetratricopeptide repeat; |
573-631 | 1.14e-06 | |||||
Tetratricopeptide repeat; Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 46.42 E-value: 1.14e-06
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PRK02603 | PRK02603 | photosystem I assembly protein Ycf3; Provisional |
561-621 | 1.98e-06 | |||||
photosystem I assembly protein Ycf3; Provisional Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 48.51 E-value: 1.98e-06
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C39_PA2778_fam | NF033920 | PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ... |
676-794 | 5.51e-06 | |||||
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2). Pssm-ID: 411481 [Multi-domain] Cd Length: 255 Bit Score: 48.70 E-value: 5.51e-06
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TPR | smart00028 | Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
627-660 | 1.14e-03 | |||||
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.04 E-value: 1.14e-03
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Name | Accession | Description | Interval | E-value | |||||
DUF1736 | pfam08409 | Domain of unknown function (DUF1736); This domain of unknown function is found in various ... |
369-443 | 4.16e-39 | |||||
Domain of unknown function (DUF1736); This domain of unknown function is found in various hypothetical metazoan proteins. Pssm-ID: 429980 Cd Length: 75 Bit Score: 138.82 E-value: 4.16e-39
|
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TPR | COG0457 | Tetratricopeptide (TPR) repeat [General function prediction only]; |
558-794 | 4.22e-21 | |||||
Tetratricopeptide (TPR) repeat [General function prediction only]; Pssm-ID: 223533 [Multi-domain] Cd Length: 291 Bit Score: 94.53 E-value: 4.22e-21
|
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TPR | COG0457 | Tetratricopeptide (TPR) repeat [General function prediction only]; |
558-790 | 1.54e-20 | |||||
Tetratricopeptide (TPR) repeat [General function prediction only]; Pssm-ID: 223533 [Multi-domain] Cd Length: 291 Bit Score: 92.99 E-value: 1.54e-20
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TPR | COG0457 | Tetratricopeptide (TPR) repeat [General function prediction only]; |
575-815 | 4.16e-19 | |||||
Tetratricopeptide (TPR) repeat [General function prediction only]; Pssm-ID: 223533 [Multi-domain] Cd Length: 291 Bit Score: 88.75 E-value: 4.16e-19
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PEP_TPR_lipo | TIGR02917 | putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
546-794 | 1.31e-15 | |||||
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 81.28 E-value: 1.31e-15
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TPR | COG0457 | Tetratricopeptide (TPR) repeat [General function prediction only]; |
524-694 | 6.41e-15 | |||||
Tetratricopeptide (TPR) repeat [General function prediction only]; Pssm-ID: 223533 [Multi-domain] Cd Length: 291 Bit Score: 76.04 E-value: 6.41e-15
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PEP_TPR_lipo | TIGR02917 | putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
548-784 | 2.73e-14 | |||||
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 77.05 E-value: 2.73e-14
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PEP_TPR_lipo | TIGR02917 | putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
572-794 | 2.52e-13 | |||||
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 73.96 E-value: 2.52e-13
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type_IV_pilW | TIGR02521 | type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
551-683 | 5.71e-13 | |||||
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 69.29 E-value: 5.71e-13
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PEP_TPR_lipo | TIGR02917 | putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
550-794 | 1.34e-12 | |||||
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 71.65 E-value: 1.34e-12
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PEP_TPR_lipo | TIGR02917 | putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
545-794 | 1.53e-12 | |||||
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 71.27 E-value: 1.53e-12
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PEP_TPR_lipo | TIGR02917 | putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
539-796 | 2.22e-12 | |||||
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 70.88 E-value: 2.22e-12
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TPR | COG0457 | Tetratricopeptide (TPR) repeat [General function prediction only]; |
607-815 | 1.45e-10 | |||||
Tetratricopeptide (TPR) repeat [General function prediction only]; Pssm-ID: 223533 [Multi-domain] Cd Length: 291 Bit Score: 62.94 E-value: 1.45e-10
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TadD | COG5010 | Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
563-751 | 2.56e-09 | |||||
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures]; Pssm-ID: 227343 [Multi-domain] Cd Length: 257 Bit Score: 58.60 E-value: 2.56e-09
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C39_PA2778_fam | NF033920 | PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ... |
573-655 | 5.35e-09 | |||||
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2). Pssm-ID: 411481 [Multi-domain] Cd Length: 255 Bit Score: 57.56 E-value: 5.35e-09
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PilF | COG3063 | Tfp pilus assembly protein PilF [Cell motility, Extracellular structures]; |
536-680 | 7.47e-09 | |||||
Tfp pilus assembly protein PilF [Cell motility, Extracellular structures]; Pssm-ID: 225605 [Multi-domain] Cd Length: 250 Bit Score: 57.43 E-value: 7.47e-09
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PilF | COG3063 | Tfp pilus assembly protein PilF [Cell motility, Extracellular structures]; |
605-764 | 1.11e-08 | |||||
Tfp pilus assembly protein PilF [Cell motility, Extracellular structures]; Pssm-ID: 225605 [Multi-domain] Cd Length: 250 Bit Score: 56.66 E-value: 1.11e-08
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YfgC | COG4783 | Putative Zn-dependent protease, contains TPR repeats [General function prediction only]; |
583-683 | 4.55e-08 | |||||
Putative Zn-dependent protease, contains TPR repeats [General function prediction only]; Pssm-ID: 227122 [Multi-domain] Cd Length: 484 Bit Score: 56.25 E-value: 4.55e-08
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3a0801s09 | TIGR00990 | mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
570-818 | 1.92e-07 | |||||
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines] Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 54.60 E-value: 1.92e-07
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TadD | COG5010 | Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
667-784 | 2.91e-07 | |||||
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures]; Pssm-ID: 227343 [Multi-domain] Cd Length: 257 Bit Score: 52.44 E-value: 2.91e-07
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PEP_TPR_lipo | TIGR02917 | putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
536-680 | 3.21e-07 | |||||
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 53.93 E-value: 3.21e-07
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PEP_TPR_lipo | TIGR02917 | putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
536-794 | 5.09e-07 | |||||
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 53.55 E-value: 5.09e-07
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TPR | COG0457 | Tetratricopeptide (TPR) repeat [General function prediction only]; |
524-646 | 7.86e-07 | |||||
Tetratricopeptide (TPR) repeat [General function prediction only]; Pssm-ID: 223533 [Multi-domain] Cd Length: 291 Bit Score: 51.77 E-value: 7.86e-07
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TPR_19 | pfam14559 | Tetratricopeptide repeat; |
573-631 | 1.14e-06 | |||||
Tetratricopeptide repeat; Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 46.42 E-value: 1.14e-06
|
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TPR | COG0457 | Tetratricopeptide (TPR) repeat [General function prediction only]; |
640-817 | 1.40e-06 | |||||
Tetratricopeptide (TPR) repeat [General function prediction only]; Pssm-ID: 223533 [Multi-domain] Cd Length: 291 Bit Score: 51.00 E-value: 1.40e-06
|
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PEP_TPR_lipo | TIGR02917 | putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
509-751 | 1.63e-06 | |||||
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 51.62 E-value: 1.63e-06
|
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PRK02603 | PRK02603 | photosystem I assembly protein Ycf3; Provisional |
561-621 | 1.98e-06 | |||||
photosystem I assembly protein Ycf3; Provisional Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 48.51 E-value: 1.98e-06
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TPR_16 | pfam13432 | Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
563-625 | 3.89e-06 | |||||
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions. Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 45.02 E-value: 3.89e-06
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C39_PA2778_fam | NF033920 | PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ... |
676-794 | 5.51e-06 | |||||
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2). Pssm-ID: 411481 [Multi-domain] Cd Length: 255 Bit Score: 48.70 E-value: 5.51e-06
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TPR_12 | pfam13424 | Tetratricopeptide repeat; |
595-659 | 6.87e-06 | |||||
Tetratricopeptide repeat; Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 44.69 E-value: 6.87e-06
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TPR_12 | pfam13424 | Tetratricopeptide repeat; |
625-683 | 3.14e-05 | |||||
Tetratricopeptide repeat; Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 42.76 E-value: 3.14e-05
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TPR_12 | pfam13424 | Tetratricopeptide repeat; |
559-625 | 4.98e-05 | |||||
Tetratricopeptide repeat; Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 41.99 E-value: 4.98e-05
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ycf3 | CHL00033 | photosystem I assembly protein Ycf3 |
563-619 | 6.37e-05 | |||||
photosystem I assembly protein Ycf3 Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 44.23 E-value: 6.37e-05
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PilF | COG3063 | Tfp pilus assembly protein PilF [Cell motility, Extracellular structures]; |
743-804 | 7.68e-05 | |||||
Tfp pilus assembly protein PilF [Cell motility, Extracellular structures]; Pssm-ID: 225605 [Multi-domain] Cd Length: 250 Bit Score: 45.11 E-value: 7.68e-05
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TadD | COG5010 | Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
536-649 | 9.33e-05 | |||||
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures]; Pssm-ID: 227343 [Multi-domain] Cd Length: 257 Bit Score: 44.73 E-value: 9.33e-05
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TPR_12 | pfam13424 | Tetratricopeptide repeat; |
735-792 | 1.76e-04 | |||||
Tetratricopeptide repeat; Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 40.45 E-value: 1.76e-04
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TPR_19 | pfam14559 | Tetratricopeptide repeat; |
709-772 | 1.84e-04 | |||||
Tetratricopeptide repeat; Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 40.26 E-value: 1.84e-04
|
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TPR_1 | pfam00515 | Tetratricopeptide repeat; |
627-660 | 1.84e-04 | |||||
Tetratricopeptide repeat; Pssm-ID: 425728 [Multi-domain] Cd Length: 34 Bit Score: 39.33 E-value: 1.84e-04
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TPR_2 | pfam07719 | Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
559-591 | 2.03e-04 | |||||
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 39.04 E-value: 2.03e-04
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TPR_1 | pfam00515 | Tetratricopeptide repeat; |
559-592 | 2.11e-04 | |||||
Tetratricopeptide repeat; Pssm-ID: 425728 [Multi-domain] Cd Length: 34 Bit Score: 38.94 E-value: 2.11e-04
|
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TPR_16 | pfam13432 | Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
665-728 | 2.26e-04 | |||||
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions. Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 40.01 E-value: 2.26e-04
|
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TPR_17 | pfam13431 | Tetratricopeptide repeat; |
581-614 | 2.27e-04 | |||||
Tetratricopeptide repeat; Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 39.06 E-value: 2.27e-04
|
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PEP_TPR_lipo | TIGR02917 | putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
661-800 | 3.59e-04 | |||||
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 44.30 E-value: 3.59e-04
|
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TPR_16 | pfam13432 | Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
598-661 | 4.42e-04 | |||||
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions. Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 39.24 E-value: 4.42e-04
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TPR_8 | pfam13181 | Tetratricopeptide repeat; |
559-591 | 4.91e-04 | |||||
Tetratricopeptide repeat; Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 38.15 E-value: 4.91e-04
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TPR | COG0790 | TPR repeat [Signal transduction mechanisms]; |
572-672 | 5.54e-04 | |||||
TPR repeat [Signal transduction mechanisms]; Pssm-ID: 223861 [Multi-domain] Cd Length: 292 Bit Score: 42.72 E-value: 5.54e-04
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TPR_11 | pfam13414 | TPR repeat; |
566-605 | 5.94e-04 | |||||
TPR repeat; Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 37.84 E-value: 5.94e-04
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PilF | COG3063 | Tfp pilus assembly protein PilF [Cell motility, Extracellular structures]; |
627-761 | 8.45e-04 | |||||
Tfp pilus assembly protein PilF [Cell motility, Extracellular structures]; Pssm-ID: 225605 [Multi-domain] Cd Length: 250 Bit Score: 42.03 E-value: 8.45e-04
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type_IV_pilW | TIGR02521 | type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
709-810 | 1.02e-03 | |||||
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 41.55 E-value: 1.02e-03
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TPR | smart00028 | Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
627-660 | 1.14e-03 | |||||
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.04 E-value: 1.14e-03
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TPR_17 | pfam13431 | Tetratricopeptide repeat; |
751-784 | 1.28e-03 | |||||
Tetratricopeptide repeat; Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 36.75 E-value: 1.28e-03
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TPR_19 | pfam14559 | Tetratricopeptide repeat; |
607-670 | 1.37e-03 | |||||
Tetratricopeptide repeat; Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.56 E-value: 1.37e-03
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TPR_11 | pfam13414 | TPR repeat; |
600-637 | 1.47e-03 | |||||
TPR repeat; Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 37.07 E-value: 1.47e-03
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TPR_11 | pfam13414 | TPR repeat; |
639-674 | 1.62e-03 | |||||
TPR repeat; Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 36.68 E-value: 1.62e-03
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TPR | smart00028 | Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
559-592 | 1.81e-03 | |||||
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 36.27 E-value: 1.81e-03
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YfgC | COG4783 | Putative Zn-dependent protease, contains TPR repeats [General function prediction only]; |
580-728 | 1.86e-03 | |||||
Putative Zn-dependent protease, contains TPR repeats [General function prediction only]; Pssm-ID: 227122 [Multi-domain] Cd Length: 484 Bit Score: 41.62 E-value: 1.86e-03
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NrfG | COG4235 | Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
667-763 | 2.87e-03 | |||||
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 226687 [Multi-domain] Cd Length: 287 Bit Score: 40.44 E-value: 2.87e-03
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TPR | smart00028 | Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
661-694 | 3.26e-03 | |||||
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.89 E-value: 3.26e-03
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TPR_10 | pfam13374 | Tetratricopeptide repeat; |
595-623 | 3.29e-03 | |||||
Tetratricopeptide repeat; Pssm-ID: 433156 [Multi-domain] Cd Length: 42 Bit Score: 35.94 E-value: 3.29e-03
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TPR_16 | pfam13432 | Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
536-592 | 4.04e-03 | |||||
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions. Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 36.55 E-value: 4.04e-03
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TPR_1 | pfam00515 | Tetratricopeptide repeat; |
763-795 | 4.42e-03 | |||||
Tetratricopeptide repeat; Pssm-ID: 425728 [Multi-domain] Cd Length: 34 Bit Score: 35.48 E-value: 4.42e-03
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TPR_16 | pfam13432 | Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
642-681 | 5.06e-03 | |||||
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions. Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 36.16 E-value: 5.06e-03
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TPR | smart00028 | Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
763-795 | 5.55e-03 | |||||
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.11 E-value: 5.55e-03
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Blast search parameters | ||||
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