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Conserved domains on  [gi|767987761|ref|XP_011521017|]
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structure-specific endonuclease subunit SLX4 isoform X2 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
BTB_POZ_BTBD12_SLX4 cd18288
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in ...
673-787 1.27e-61

BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Structure-specific endonuclease subunit SLX4; SLX4, also called BTB/POZ domain-containing protein 12 (BTBD12), is a Holliday junction resolvase subunit that binds multiple DNA repair/recombination endonucleases and is required for DNA repair. Mutations of the SLX4 gene are found in Fanconi anemia. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


:

Pssm-ID: 349597 [Multi-domain]  Cd Length: 116  Bit Score: 206.16  E-value: 1.27e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761  673 SLGLLVADFGAMVNNPHLSDVQFQTDSGEVLYAHKFVLYARCPLLIQYVNNEGFSA-VEDGVLTQRVLLGDVSTEAARTF 751
Cdd:cd18288     1 SLGKLAADFSAMVNNPHLSDVQFQTDSGEVLYAHSFVLYARCPLLIQMVHSEGFSVeEEGGVTTRRVLLGDVSGEAARCF 80
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 767987761  752 LHYLYTADTGLPPGLSSELSSLAHRFGVSELVHLCE 787
Cdd:cd18288    81 LQYLYTADTGLPPGLSPHVSELADRFGVSELVHLCE 116
SAP_SLX4 cd22999
SAP domain of structure-specific endonuclease subunit SLX4 and similar proteins; SLX4, also ...
1555-1604 1.34e-21

SAP domain of structure-specific endonuclease subunit SLX4 and similar proteins; SLX4, also called BTB/POZ domain-containing protein 12 (BTBD12), is a Holliday junction resolvase subunit that binds multiple DNA repair/recombination endonucleases and is required for DNA repair. Mutations in the SLX4 gene are found in Fanconi anemia. This model corresponds to a conserved region called the SAP domain, which is responsible for the binding of MUS81, which plays a distinct role in interstrand crosslink repair.


:

Pssm-ID: 439380 [Multi-domain]  Cd Length: 51  Bit Score: 89.54  E-value: 1.34e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 767987761 1555 PKVPITPMPQYSIMETPVLKKELDRFGVRPLPKRQMVLKLKEIFQYTHQT 1604
Cdd:cd22999     1 KPSPVTPMPDYESMTTPELKKELKKYGFKPLPRKKMIALLEEIWEQTHPY 50
Slx4 pfam09494
Slx4 endonuclease; The Slx4 protein is a heteromeric structure-specific endonuclease found ...
1753-1809 7.19e-14

Slx4 endonuclease; The Slx4 protein is a heteromeric structure-specific endonuclease found from fungi to mammals. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates.


:

Pssm-ID: 430644  Cd Length: 60  Bit Score: 67.53  E-value: 7.19e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 767987761  1753 EALRCYIRSKPALYQKVLLYQPFELRELQAELRQNG--LRVSSRRLLDFLDTHCITFTT 1809
Cdd:pfam09494    2 EAITELIKSDPSLYEKILTYEPIVLEDLTAWLNEGGflIEVDPGTLKEWCDSQGICFTN 60
 
Name Accession Description Interval E-value
BTB_POZ_BTBD12_SLX4 cd18288
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in ...
673-787 1.27e-61

BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Structure-specific endonuclease subunit SLX4; SLX4, also called BTB/POZ domain-containing protein 12 (BTBD12), is a Holliday junction resolvase subunit that binds multiple DNA repair/recombination endonucleases and is required for DNA repair. Mutations of the SLX4 gene are found in Fanconi anemia. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349597 [Multi-domain]  Cd Length: 116  Bit Score: 206.16  E-value: 1.27e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761  673 SLGLLVADFGAMVNNPHLSDVQFQTDSGEVLYAHKFVLYARCPLLIQYVNNEGFSA-VEDGVLTQRVLLGDVSTEAARTF 751
Cdd:cd18288     1 SLGKLAADFSAMVNNPHLSDVQFQTDSGEVLYAHSFVLYARCPLLIQMVHSEGFSVeEEGGVTTRRVLLGDVSGEAARCF 80
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 767987761  752 LHYLYTADTGLPPGLSSELSSLAHRFGVSELVHLCE 787
Cdd:cd18288    81 LQYLYTADTGLPPGLSPHVSELADRFGVSELVHLCE 116
SAP_SLX4 cd22999
SAP domain of structure-specific endonuclease subunit SLX4 and similar proteins; SLX4, also ...
1555-1604 1.34e-21

SAP domain of structure-specific endonuclease subunit SLX4 and similar proteins; SLX4, also called BTB/POZ domain-containing protein 12 (BTBD12), is a Holliday junction resolvase subunit that binds multiple DNA repair/recombination endonucleases and is required for DNA repair. Mutations in the SLX4 gene are found in Fanconi anemia. This model corresponds to a conserved region called the SAP domain, which is responsible for the binding of MUS81, which plays a distinct role in interstrand crosslink repair.


Pssm-ID: 439380 [Multi-domain]  Cd Length: 51  Bit Score: 89.54  E-value: 1.34e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 767987761 1555 PKVPITPMPQYSIMETPVLKKELDRFGVRPLPKRQMVLKLKEIFQYTHQT 1604
Cdd:cd22999     1 KPSPVTPMPDYESMTTPELKKELKKYGFKPLPRKKMIALLEEIWEQTHPY 50
Slx4 pfam09494
Slx4 endonuclease; The Slx4 protein is a heteromeric structure-specific endonuclease found ...
1753-1809 7.19e-14

Slx4 endonuclease; The Slx4 protein is a heteromeric structure-specific endonuclease found from fungi to mammals. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates.


Pssm-ID: 430644  Cd Length: 60  Bit Score: 67.53  E-value: 7.19e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 767987761  1753 EALRCYIRSKPALYQKVLLYQPFELRELQAELRQNG--LRVSSRRLLDFLDTHCITFTT 1809
Cdd:pfam09494    2 EAITELIKSDPSLYEKILTYEPIVLEDLTAWLNEGGflIEVDPGTLKEWCDSQGICFTN 60
BTB pfam00651
BTB/POZ domain; The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain ...
681-788 8.62e-08

BTB/POZ domain; The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerization and in some instances heteromeric dimerization. The structure of the dimerized PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.


Pssm-ID: 395526 [Multi-domain]  Cd Length: 107  Bit Score: 51.87  E-value: 8.62e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761   681 FGAMVNNPHLSDVQFQTDsGEVLYAHKFVLYARCPLLiqyvnNEGFSAVEDGVLTQRVLLGDVSTEAARTFLHYLYTaDT 760
Cdd:pfam00651    1 LNELREQGELCDVTLVVG-DKEFRAHKAVLAACSPYF-----KALFSGQESESSVSEITLDDVSPEDFEALLEFMYT-GK 73
                           90       100
                   ....*....|....*....|....*...
gi 767987761   761 GLPPGLSSELSSLAHRFGVSELVHLCEQ 788
Cdd:pfam00651   74 LISEENVDDLLAAADKLQIPSLVDKCEE 101
BTB smart00225
Broad-Complex, Tramtrack and Bric a brac; Domain in Broad-Complex, Tramtrack and Bric a brac. ...
699-788 4.27e-07

Broad-Complex, Tramtrack and Bric a brac; Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.


Pssm-ID: 197585 [Multi-domain]  Cd Length: 97  Bit Score: 49.61  E-value: 4.27e-07
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761    699 SGEVLYAHKFVLYARCPLLIQYVNNEGFSAVEDgvltqRVLLGDVSTEAARTFLHYLYTADTGLPPGLSSELSSLAHRFG 778
Cdd:smart00225    7 GGKKFHAHKAVLAAHSPYFKALFSSDFKESDKS-----EIYLDDVSPEDFRALLNFLYTGKLDLPEENVEELLELADYLQ 81
                            90
                    ....*....|
gi 767987761    779 VSELVHLCEQ 788
Cdd:smart00225   82 IPGLVELCEE 91
 
Name Accession Description Interval E-value
BTB_POZ_BTBD12_SLX4 cd18288
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in ...
673-787 1.27e-61

BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Structure-specific endonuclease subunit SLX4; SLX4, also called BTB/POZ domain-containing protein 12 (BTBD12), is a Holliday junction resolvase subunit that binds multiple DNA repair/recombination endonucleases and is required for DNA repair. Mutations of the SLX4 gene are found in Fanconi anemia. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349597 [Multi-domain]  Cd Length: 116  Bit Score: 206.16  E-value: 1.27e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761  673 SLGLLVADFGAMVNNPHLSDVQFQTDSGEVLYAHKFVLYARCPLLIQYVNNEGFSA-VEDGVLTQRVLLGDVSTEAARTF 751
Cdd:cd18288     1 SLGKLAADFSAMVNNPHLSDVQFQTDSGEVLYAHSFVLYARCPLLIQMVHSEGFSVeEEGGVTTRRVLLGDVSGEAARCF 80
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 767987761  752 LHYLYTADTGLPPGLSSELSSLAHRFGVSELVHLCE 787
Cdd:cd18288    81 LQYLYTADTGLPPGLSPHVSELADRFGVSELVHLCE 116
SAP_SLX4 cd22999
SAP domain of structure-specific endonuclease subunit SLX4 and similar proteins; SLX4, also ...
1555-1604 1.34e-21

SAP domain of structure-specific endonuclease subunit SLX4 and similar proteins; SLX4, also called BTB/POZ domain-containing protein 12 (BTBD12), is a Holliday junction resolvase subunit that binds multiple DNA repair/recombination endonucleases and is required for DNA repair. Mutations in the SLX4 gene are found in Fanconi anemia. This model corresponds to a conserved region called the SAP domain, which is responsible for the binding of MUS81, which plays a distinct role in interstrand crosslink repair.


Pssm-ID: 439380 [Multi-domain]  Cd Length: 51  Bit Score: 89.54  E-value: 1.34e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 767987761 1555 PKVPITPMPQYSIMETPVLKKELDRFGVRPLPKRQMVLKLKEIFQYTHQT 1604
Cdd:cd22999     1 KPSPVTPMPDYESMTTPELKKELKKYGFKPLPRKKMIALLEEIWEQTHPY 50
BTB_POZ_BTBD19 cd18294
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in ...
677-788 2.46e-14

BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in BTB/POZ domain-containing protein 19 (BTBD19); BTBD19 is a BTB domain-containing protein. Its function remains unclear. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349603 [Multi-domain]  Cd Length: 111  Bit Score: 70.74  E-value: 2.46e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761  677 LVADFGAMVNNPHLSDVQFQ-TDSGEVLYAHKFVLYARCPLlIQYVNNEGFSAVEDgvlTQRVLLGDVSTEAARTFLHYL 755
Cdd:cd18294     1 FAADMKSLINNPEFSDVKFLvGPERQEIFAHKCILAARCEV-FRAMFLTGPQKEST---QSPLVLSDIEPEVFRAVLEFI 76
                          90       100       110
                  ....*....|....*....|....*....|...
gi 767987761  756 YTADTGLPPGLSSELSSLAHRFGVSELVHLCEQ 788
Cdd:cd18294    77 YTNCVTLSNHTVIEVLAAAVEYGLDELRKLCER 109
BTB2_POZ_RhoBTB cd18300
second BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain ...
684-789 3.04e-14

second BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Rho-related BTB domain-containing proteins (RhoBTB); RhoBTB proteins constitute a subfamily of atypical members within the Rho family of small guanosine triphosphatases (GTPases), which is characterized by containing a GTPase domain (in most cases, non-functional) followed by a proline-rich region, a tandem of 2 BTB domains, and a conserved C-terminal region. In humans, the RhoBTB subfamily consists of 3 isoforms: RhoBTB1, RhoBTB2, and RhoBTB3. Orthologs are present in several other eukaryotes, such as Drosophila and Dictyostelium, but have been lost in plants and fungi. This model corresponds to the second BTB domain. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349609 [Multi-domain]  Cd Length: 108  Bit Score: 70.35  E-value: 3.04e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761  684 MVNNPHLSDVQFQTDSGEVlYAHKFVLYARCplliqyvnnEGFSA------VEDGvlTQRVLLGDVSTEAARTFLHYLYT 757
Cdd:cd18300     3 FLNKGLFSDVTFIVEDGTI-PAHKALLVARC---------DVMAAmfggnfRESS--AKEVELPGVSKETFLALLEYLYT 70
                          90       100       110
                  ....*....|....*....|....*....|...
gi 767987761  758 ADTGLPPGLSS-ELSSLAHRFGVSELVHLCEQV 789
Cdd:cd18300    71 DQAPILEDGDCvGLIVLANRLCLPRLVALCEQY 103
Slx4 pfam09494
Slx4 endonuclease; The Slx4 protein is a heteromeric structure-specific endonuclease found ...
1753-1809 7.19e-14

Slx4 endonuclease; The Slx4 protein is a heteromeric structure-specific endonuclease found from fungi to mammals. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates.


Pssm-ID: 430644  Cd Length: 60  Bit Score: 67.53  E-value: 7.19e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 767987761  1753 EALRCYIRSKPALYQKVLLYQPFELRELQAELRQNG--LRVSSRRLLDFLDTHCITFTT 1809
Cdd:pfam09494    2 EAITELIKSDPSLYEKILTYEPIVLEDLTAWLNEGGflIEVDPGTLKEWCDSQGICFTN 60
BTB_POZ_ZBTB_KLHL-like cd18186
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in ...
690-777 2.66e-11

BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing (ZBTB) proteins, Kelch-like (KLHL) proteins, and similar proteins; This family includes a variety of BTB/POZ domain-containing proteins, such as zinc finger and BTB domain-containing (ZBTB) proteins and Kelch-like (KLHL) proteins. They have diverse functions, such as transcriptional regulation, chromatin remodeling, protein degradation and cytoskeletal regulation. Many BTB/POZ proteins contain one or two additional domains, such as kelch repeats, zinc-finger domains, FYVE (Fab1, YOTB, Vac1, and EEA1) fingers, or ankyrin repeats. These special additional domains or interaction partners provide unique characteristics and functions to BTB/POZ proteins. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349497 [Multi-domain]  Cd Length: 82  Bit Score: 61.03  E-value: 2.66e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761  690 LSDVQFQTDsGEVLYAHKFVLYARCPLLiqyvnNEGFSAVEDGVLTQRVLLGDVSTEAARTFLHYLYTADTGLPPGLSSE 769
Cdd:cd18186     1 LCDVTLVVG-GREFPAHRAVLAARSPYF-----RAMFSSGMKESSSSEIELDDVSPEAFEALLDYIYTGELELSEENVEE 74

                  ....*...
gi 767987761  770 LSSLAHRF 777
Cdd:cd18186    75 LLAAADKL 82
BTB1_POZ_RhoBTB cd18299
first BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain ...
680-789 5.30e-10

first BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Rho-related BTB domain-containing proteins (RhoBTB); RhoBTB proteins constitute a subfamily of atypical members within the Rho family of small guanosine triphosphatases (GTPases), which is characterized by containing a GTPase domain (in most cases, non-functional) followed by a proline-rich region, tandem BTB domains, and a conserved C-terminal region. In vertebrates, the RhoBTB subfamily consists of 3 isoforms: RhoBTB1, RhoBTB2, and RhoBTB3. Orthologs are present in several other eukaryotes, such as Drosophila and Dictyostelium, but have been lost in plants and fungi. This model corresponds to the first BTB domain. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349608 [Multi-domain]  Cd Length: 103  Bit Score: 57.99  E-value: 5.30e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761  680 DFGAMVNNPHLSDVQFQTDSGEVLYAHKFVLYARCP---LLIqyvnnegfsavedGVLTQRVLLGDVSTEAARTFLHYLY 756
Cdd:cd18299     2 DLRNLLHSPSCADVVFILQGGVRIFAHRIVLAAASSvfaDLF-------------LMMTVVTLDSDITPEAFRRVLEFLY 68
                          90       100       110
                  ....*....|....*....|....*....|...
gi 767987761  757 TADTGLPPGLSSELSSLAHRFGVSELVHLCEQV 789
Cdd:cd18299    69 TGVLDENEDDLKELKDAAELLELFDLVMMCTNV 101
BTB_POZ_Rank-5 cd18303
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in ...
677-788 6.72e-10

BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in rabankyrin-5 (Rank-5); Rank-5, also called ankyrin repeat and FYVE domain-containing protein 1 (ANKFY1) or ankyrin repeats hooked to a zinc finger motif (ANKHZN), is a Rab5 effector that regulates and coordinates different endocytic mechanisms. It contains an N-terminal BTB domain, followed by a BACK domain, several ankyrin (ANK) repeats and a C-terminal FYVE domain. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349612 [Multi-domain]  Cd Length: 120  Bit Score: 58.49  E-value: 6.72e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761  677 LVADFGAMVNNPHLSDVQFQTDsGEVLYAHKFVLYARcplliqyvnnEGFSAVEDGVLTQRVLLGDVSTEAARTFLHYLY 756
Cdd:cd18303     5 LLKTVASLFDKELYSDITIKLA-DKSIPAHKFVLAAR----------SEKWSNENLASTNELDLSDISYEVVLALLRWLY 73
                          90       100       110
                  ....*....|....*....|....*....|....
gi 767987761  757 T--ADTGLPPGLSSELSSLAHRFGVSELVHLCEQ 788
Cdd:cd18303    74 TdeLDLTLDDEFLLELMKAAKRFQLTDLVERCER 107
BTB_POZ_RCBTB1_2 cd18298
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in ...
686-788 2.22e-09

BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in RCC1 and BTB domain-containing proteins, RCBTB1 and RCBTB2; The RCC1-related guanine nucleotide exchange factor (GEF) family includes RCC1 and BTB domain-containing proteins, RCBTB1 and RCBTB2, both of which are chromosome condensation regulator-like guanine nucleotide exchange factors. They contain an RCC1 repeat, a BTB domain, and a BACK domain. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349607 [Multi-domain]  Cd Length: 108  Bit Score: 56.49  E-value: 2.22e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761  686 NNPHLSDVQFQTDsGEVLYAHKFVLYARCplliQYVNNEgFSAVEDGVLTQRVLLGDVSTEAARTFLHYLYTADTGLPPG 765
Cdd:cd18298     8 NDPRTSDLKFRVD-GKYIYVHKAILKIRC----EYFRSM-FQSHWNEDDKNVIEIDQYSYPVYYAFLRYLYTDQVDLPPE 81
                          90       100
                  ....*....|....*....|...
gi 767987761  766 LSSELSSLAHRFGVSELVHLCEQ 788
Cdd:cd18298    82 DAIGLLDLANSYCEERLKKLCED 104
BTB_POZ_BTBD9 cd18287
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in ...
674-783 1.68e-08

BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in BTB/POZ domain-containing protein 9 (BTBD9); BTBD9 is a risk factor for Restless Legs Syndrome (RLS) encoding a Cullin-3 substrate adaptor. The BTBD9 gene may be associated with antipsychotic-induced RLS in schizophrenia. Mutations in BTBD9 lead to reduced dopamine, increased locomotion and sleep fragmentation. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349596 [Multi-domain]  Cd Length: 119  Bit Score: 54.55  E-value: 1.68e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761  674 LGLLVADFGAMVNNPHLSDVQFQTDsGEVLYAHKFVLYARCplliQYvnnegFSAVEDGVL----TQRVLLGDVSTEAAR 749
Cdd:cd18287     6 VHFLSEDIGALFLNEEYSDVTFVVE-EKRFPAHRVILAARS----EY-----FRALLYGGMresqQSEIELKDTNAEAFK 75
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 767987761  750 TFLHYLYTAD---TGLPPGLSSELSSLAHRFGVSELV 783
Cdd:cd18287    76 ALLKYIYTGRltlTDLKEDVLLDVLGLAHQYGFEELE 112
BTB pfam00651
BTB/POZ domain; The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain ...
681-788 8.62e-08

BTB/POZ domain; The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerization and in some instances heteromeric dimerization. The structure of the dimerized PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.


Pssm-ID: 395526 [Multi-domain]  Cd Length: 107  Bit Score: 51.87  E-value: 8.62e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761   681 FGAMVNNPHLSDVQFQTDsGEVLYAHKFVLYARCPLLiqyvnNEGFSAVEDGVLTQRVLLGDVSTEAARTFLHYLYTaDT 760
Cdd:pfam00651    1 LNELREQGELCDVTLVVG-DKEFRAHKAVLAACSPYF-----KALFSGQESESSVSEITLDDVSPEDFEALLEFMYT-GK 73
                           90       100
                   ....*....|....*....|....*...
gi 767987761   761 GLPPGLSSELSSLAHRFGVSELVHLCEQ 788
Cdd:pfam00651   74 LISEENVDDLLAAADKLQIPSLVDKCEE 101
BTB_POZ_ABTB2-like cd18297
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in ...
679-787 8.91e-08

BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Ankyrin repeat and BTB/POZ domain-containing protein 2 (ABTB2) and similar proteins; This family includes ABTB2, BTBD11, plant ARM repeat protein interacting with ABF2 (ARIA), and similar proteins. ABTB2, also called bood POZ containing gene type 2 (BPOZ-2), is a scaffold protein that controls the degradation of many biological proteins ranging from embryonic development to tumor progression. It may be involved in the initiation of hepatocyte growth. ABTB2 functions as an adaptor protein for the E3 ubiquitin ligase scaffold protein Cullin-3. It directly binds to eukaryotic elongation factor 1A1 (eEF1A1) to promote eEF1A1 ubiquitylation and degradation, and prevent translation. The BTBD11 gene has been recently identified as an all-trans retinoic acid (atRA)-responsive gene that lies downstream of atRA and its receptors in the regulation of neurite outgrowth and cell adhesion in neural as well as non-neural tissues. ARIA is an armadillo (ARM) repeat and BTB domain-containing protein that acts as a positive regulator of ABA response via the modulation of the transcriptional activity of ABF2. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349606 [Multi-domain]  Cd Length: 117  Bit Score: 52.28  E-value: 8.91e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761  679 ADFGAMVNNPHLSDVQFQTDsGEVLYAHKFVLYARcplliqyvnNEGFSAVEDGVLTQR----VLLGDVSTEAARTFLHY 754
Cdd:cd18297     1 RIDPHYVNNPEMSDVTFLVE-GRPFYAHKIVLVTA---------SDRFKSMLSSGSTEAqtpvIEIPDIRYDIFQLMMQY 70
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 767987761  755 LYTA---DTGLPPGLSSELSSLAHRFGVSELVHLCE 787
Cdd:cd18297    71 LYTGgveSLDVAQDDALELLRAASFFQLDGLKRHCE 106
BTB2_POZ_RHOBTB3 cd18360
second BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain ...
682-787 1.76e-07

second BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Rho-related BTB domain-containing protein 3 (RhoBTB3); RhoBTB3 is an atypical Rho family small guanosine triphosphatase (GTPase) and is a member of the RhoBTB subfamily, which is characterized by containing a GTPase domain (in most cases, non-functional) followed by a proline-rich region, tandem BTB domains, and a conserved C-terminal region. The carboxyl terminal extension that harbors two BTB domains is capable of assembling cullin 3-dependent ubiquitin ligase complexes. RhoBTB3 is a Golgi-associated Rho-related ATPase that regulates the S/G2 transition of the cell cycle by targeting cyclin E for ubiquitylation. It is involved in vesicle trafficking and in targeting proteins for degradation in the proteasome. It binds directly to Rab9 GTPase and functions with Rab9 in protein transport from endosomes to the trans Golgi network. It also promotes proteasomal degradation of Hypoxia-inducible factor alpha (HIFalpha) through facilitating hydroxylation and suppresses the Warburg effect. This model corresponds to the second BTB domain. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349669 [Multi-domain]  Cd Length: 110  Bit Score: 51.39  E-value: 1.76e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761  682 GAMVNNPHLSDVQFQTdSGEVLYAHKFVLYARCPLLIQYVNneGFSAVEDGVLtqrVLLGDVSTEAARTFLHYLYTaDTG 761
Cdd:cd18360     2 GLFFNSPLLADVVFKI-QGTTVPAHRAVLVARCEVMAAMFN--GNYAEAKSFL---VPIYGVSKDTFLSFLEYLYT-DSC 74
                          90       100
                  ....*....|....*....|....*...
gi 767987761  762 LPPGLSSELSSL--AHRFGVSELVHLCE 787
Cdd:cd18360    75 CPASILQAMALLicAEMYQVSRLQHICE 102
BTB_POZ_RCBTB2_CHC1L cd18354
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in ...
686-788 2.60e-07

BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in RCC1 and BTB domain-containing protein 2 (RCBTB2); RCBTB2 is also called chromosome condensation 1-like (CHC1-L), RCC1-like G exchanging factor, or regulator of chromosome condensation and BTB domain-containing protein 2. It is a chromosome condensation regulator-like guanine nucleotide exchange factor (GEF) protein for the Ras-related GTPase Ran. It contains an RCC1 repeat, a BTB domain, and a BACK domain. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349663 [Multi-domain]  Cd Length: 117  Bit Score: 51.09  E-value: 2.60e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761  686 NNPHLSDVQFQTDsGEVLYAHKFVLYARCPLLIQYVNNEGFSAVEdgvltqrvlLGDVSTEAARTFLHYLYTADTGLPPG 765
Cdd:cd18354    16 DNPDTADLKFLVD-GKYIYVHKVLLKIRCEHFRSLLNENEEEIIE---------MSQFSYPVYRAFLEYLYTDSISLSPE 85
                          90       100
                  ....*....|....*....|...
gi 767987761  766 LSSELSSLAHRFGVSELVHLCEQ 788
Cdd:cd18354    86 DAIGLLDLATFYRENRLKKLCQQ 108
BTB smart00225
Broad-Complex, Tramtrack and Bric a brac; Domain in Broad-Complex, Tramtrack and Bric a brac. ...
699-788 4.27e-07

Broad-Complex, Tramtrack and Bric a brac; Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.


Pssm-ID: 197585 [Multi-domain]  Cd Length: 97  Bit Score: 49.61  E-value: 4.27e-07
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761    699 SGEVLYAHKFVLYARCPLLIQYVNNEGFSAVEDgvltqRVLLGDVSTEAARTFLHYLYTADTGLPPGLSSELSSLAHRFG 778
Cdd:smart00225    7 GGKKFHAHKAVLAAHSPYFKALFSSDFKESDKS-----EIYLDDVSPEDFRALLNFLYTGKLDLPEENVEELLELADYLQ 81
                            90
                    ....*....|
gi 767987761    779 VSELVHLCEQ 788
Cdd:smart00225   82 IPGLVELCEE 91
BTB_POZ_trishanku-like cd18314
BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in ...
685-786 1.40e-06

BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Dictyostelium discoideum trishanku and similar proteins; Trishanku is a novel regulator required for normal morphogenesis and cell-type stability in Dictyostelium discoideum. It contains a BTB domain. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349623 [Multi-domain]  Cd Length: 96  Bit Score: 48.11  E-value: 1.40e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761  685 VNNPHLSDVQFQTdSGEVLYAHKFVLYARCPLLIQYVNNEGFSAVEdgvltQRVLLGDVSTEAARTFLHYLYTADTGLPP 764
Cdd:cd18314     1 YNDSEFSDVVLCV-GDRKFFAHRIVLCARSPVFRSMLTGSMIESNL-----KEVTLEDVEPEIFETVLKYMYTGQVTLSE 74
                          90       100
                  ....*....|....*....|..
gi 767987761  765 GLSSELSSLAHRFGVSELVHLC 786
Cdd:cd18314    75 ENVLDLLMLASKYQVPDLEKLC 96
BTB_POZ_RCBTB1_CLLD7 cd18353
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in ...
686-789 5.16e-06

BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in RCC1 and BTB domain-containing protein 1 (RCBTB1); RCBTB1 is also called chronic lymphocytic leukemia deletion region gene 7 protein (CLLD7), CLL deletion region gene 7 protein, regulator of chromosome condensation and BTB domain-containing protein 1, or E4.5. It is a novel chromosome condensation regulator-like guanine nucleotide exchange factor that may be involved in cell cycle regulation by chromatin remodeling. It may also function as a tumor suppressor that regulates pathways of DNA damage/repair and apoptosis. RCBTB1 may also be a substrate adaptor for a cullin3 (CUL3) E3 ligase complex that mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Biallelic mutations in RCBTB1 may cause isolated and syndromic retinal dystrophy. It contains an RCC1 repeat, a BTB domain, and a BACK domain. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349662 [Multi-domain]  Cd Length: 117  Bit Score: 47.25  E-value: 5.16e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761  686 NNPHLSDVQFQTDsGEVLYAHKFVLYARCP---LLIQYVNNEGFSAVedgvltqrVLLGDVSTEAARTFLHYLYTADTGL 762
Cdd:cd18353    16 DSPETSDLKFRVD-GKYIHVHKAVLKIRCEhfrTMFQSHWNEDMKEV--------IEIDQFSYPVYRAFLEYLYTDSVDL 86
                          90       100
                  ....*....|....*....|....*..
gi 767987761  763 PPGLSSELSSLAHRFGVSELVHLCEQV 789
Cdd:cd18353    87 PPEDAIGLLDLATSYCENRLKKLCQHI 113
BTB_POZ_BPM_plant cd18280
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in ...
680-787 2.74e-05

BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in plant BTB/POZ-MATH (BPM) protein family; The BPM protein family includes Arabidopsis thaliana BTB/POZ and MATH domain-containing proteins, AtBPM1-6, and similar proteins from other plants. BPM protein, also called protein BTB-POZ and MATH domain, may act as a substrate-specific adaptor of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349589 [Multi-domain]  Cd Length: 121  Bit Score: 45.40  E-value: 2.74e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761  680 DFGAMVNNPHLSDVQFQTDsGEVLYAHKFVLYARCPlliqYVNNEGFSAVEDGVlTQRVLLGDVSTEAARTFLHYLYT-- 757
Cdd:cd18280     4 HFGALLESEEGADVTFNVD-GEKFRAHKLVLAARSP----VFRSMLFGPMREEN-EGEIVIEDVEPPVFKALLHFIYKde 77
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 767987761  758 -----ADTGLPPGLSSE-----LSSLAHRFGVSELVHLCE 787
Cdd:cd18280    78 lpddvEPAGSDSSSLDTtmaqhLLAAADRYALERLRLLCE 117
BTB_POZ_BTBD17 cd18292
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in ...
677-788 2.91e-05

BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in BTB/POZ domain-containing protein 17 (BTBD17); BTBD17, also called galectin-3-binding protein-like, is a BTB domain-containing protein. Its function remains unclear. It may be associated with hepatocellular carcinoma. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349601 [Multi-domain]  Cd Length: 114  Bit Score: 44.97  E-value: 2.91e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761  677 LVADFGAMVNNPHLSDVQFQTDsGEVLYAHKFVLYARCPLLIQYVNNEGFSAVEDGVLTqrvLLGDVSTEAA-RTFLHYL 755
Cdd:cd18292     4 FLQDIAQLYNNEELSDIVLRVG-GKVFHAHRLILAKSSDVFRVMLSNDWWSESKQSEIE---LVEDPECAAVfEKFLRYL 79
                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 767987761  756 YTA------DTGLPpglsseLSSLAHRFGVSELVHLCEQ 788
Cdd:cd18292    80 YTGqisvnlETALP------LLMLADKYNVTDLKQLCVD 112
BTB2_POZ_BTBD8 cd18286
second BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain ...
684-782 3.20e-05

second BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in BTB/POZ domain-containing protein 8 (BTBD8); BTBD8 is a BTB-domain-containing Kelch-like protein that may play a role in developmental processes. It may also act as a protein-protein adaptor in a transcription complex and thus be involved in brain development. BTBD8 contains two BTB domains. This model corresponds to the second domain. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349595 [Multi-domain]  Cd Length: 121  Bit Score: 44.94  E-value: 3.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761  684 MVNNPHLSDVQFQTDSGEVLyAHKFVLYARCplliQYvnnegFSAVEDGVLTQR----VLLGDVSTEAARTFLHYLYTAD 759
Cdd:cd18286    11 LFLNGEDSDITIKVDGKTFK-AHRCILCARS----SY-----FAAMLSGSWAESnsseITLTGVSHAAVSFVLLFIYGGV 80
                          90       100
                  ....*....|....*....|....
gi 767987761  760 TGLPPGLS-SELSSLAHRFGVSEL 782
Cdd:cd18286    81 LDLPDDVNlGELLSLADMYGLDGL 104
BTB_POZ_roadkill-like cd18345
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in ...
677-788 1.59e-04

BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster protein roadkill and similar proteins; Drosophila melanogaster protein roadkill, also called Hh-induced MATH and BTB domain-containing protein (HIB), is a hedgehog-induced BTB protein that modulates hedgehog signaling by degrading Ci/Gli transcription factor. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349654 [Multi-domain]  Cd Length: 121  Bit Score: 43.30  E-value: 1.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761  677 LVADFGAMVNNPHLSDVQFQTdSGEVLYAHKFVLYARCPlliqyVNNEGFSAVEDGVLTQRVLLGDVSTEAARTFLHYLY 756
Cdd:cd18345     5 LSDDLGLLFERSAFSDVTLCV-GGREFQAHKAILAARSP-----VFNAMFEHEMEERKQNRVEITDVDHEVMREMLRFIY 78
                          90       100       110
                  ....*....|....*....|....*....|..
gi 767987761  757 TADTGLPPGLSSELSSLAHRFGVSELVHLCEQ 788
Cdd:cd18345    79 TGKAPNLDKMADDLLAAADKYALERLKVMCEE 110
BTB_POZ_NS1BP cd18306
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in ...
677-788 2.45e-04

BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Influenza virus NS1A-binding protein (NS1-BP); NS1-BP is also called NS1-binding protein, aryl hydrocarbon receptor-associated protein 3 (ARA3), or IVNS1ABP. It is a novel protein that interacts with the influenza A virus nonstructural NS1 protein, which is relocalized in the nuclei of infected cells. It plays a role in cell division and in the dynamic organization of the actin skeleton as a stabilizer of actin filaments by association with F-actin through its kelch repeats. It also interacts with alpha-enolase/MBP-1 and is involved in c-Myc gene transcriptional control. NS1-BP contains BTB and BACK domains at the N-terminal region and kelch repeats at the C-terminal region. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349615 [Multi-domain]  Cd Length: 124  Bit Score: 42.63  E-value: 2.45e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761  677 LVADFGAMVNNPHLSDVQFQTDSGEVlYAHKFVLYARCPLLIQYVNNEGfsavEDGVLTQrVLLGDVSTEAARTFLHYLY 756
Cdd:cd18306     5 VLAKLNALRKNRQFCDVILQVGGHEI-PAHRAVLACASPYLFELFSSDS----DGESILT-VKLDGLDPDAVEVLVNYAY 78
                          90       100       110
                  ....*....|....*....|....*....|..
gi 767987761  757 TADTGLPPGLSSELSSLAHRFGVSELVHLCEQ 788
Cdd:cd18306    79 TSRLEVPADLVKSVYSAAKKLKMDRVKKACGD 110
BTB_POZ_NPR_plant cd18310
BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in ...
675-788 2.62e-04

BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in plant regulatory proteins, NPR1-4, and similar proteins; NPR1 and NPR2 are essential for pathogenicity and the utilization of many nitrogen sources. NPR1 is also called nitrogen pathogenicity regulation protein NPR1, non-inducible immunity protein 1 (Nim1), nonexpresser of PR genes 1, or salicylic acid insensitive 1 (Sai1). It acts as a transcription coactivator that plays dual roles in regulating plant immunity. NPR3 and NPR4 are involved in negative regulation of defense responses against pathogens in plant. NPR proteins contain a BTB domain, DUF3420, ankyrin (ANK) repeats, and a conserved C-terminal domain. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349619 [Multi-domain]  Cd Length: 145  Bit Score: 43.06  E-value: 2.62e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761  675 GLLVADFGAMVNNPHL--SDVQFQTDSGEVLYAHKFVLYARCPLLIQYvnnegFSAVEDGVLTQRVLL--------GDVS 744
Cdd:cd18310     1 KKLSSDLENLLDSPDLfySDAEIIVEGGRPVPVHRCILAARSPFFRDI-----FASAKAEGANTKPKLelrelipgGIVG 75
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767987761  745 TEAARTFLHYLYTADTGLPPGLSS--------------------ELSSLAHRFGVSELVHLCEQ 788
Cdd:cd18310    76 YDAFMLVLSYLYSGRLRLVPKEGSacvdsdcwhvacrpavdfalEVLYAASVFQIPELVSLFQR 139
BTB_POZ_ARIA_plant cd18352
BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in ...
685-794 4.24e-04

BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in plant ARM repeat protein interacting with ABF2 (ARIA) and similar proteins; ARIA is an armadillo (ARM) repeat and BTB domain-containing protein that acts as a positive regulator of ABA response via the modulation of the transcriptional activity of ABF2, a transcription factor which controls ABA-dependent gene expression via the G-box-type ABA-responsive elements. ARIA is a novel abscisic acid signaling component. It negatively regulates seed germination and young seedling growth. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349661 [Multi-domain]  Cd Length: 116  Bit Score: 41.69  E-value: 4.24e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761  685 VNNPHLSDVQFQTDsGEVLYAHKFVLYArcplliqyvNNEGFSAVEDGVLTQR----VLLGDVSTEAARTFLHYLYTADT 760
Cdd:cd18352     8 VNNATLSDVTFLVE-GRRFYAHRIALLA---------SSDAFRAMFDGGYREKeardIEIPNIRWEVFELMMRFIYTGSV 77
                          90       100       110
                  ....*....|....*....|....*....|....
gi 767987761  761 GLPPGLSSELSSLAHRFGVSELVHLCEQVpIATD 794
Cdd:cd18352    78 DITNDIAKDLLRAADQYLLEGLKRLCEYT-IAQD 110
BTB2_POZ_RHOBTB2 cd18359
second BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain ...
690-788 6.46e-04

second BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Rho-related BTB domain-containing protein 2 (RhoBTB2); RhoBTB2, also called Deleted in breast cancer 2 gene protein (DBC2) or p83, is an atypical Rho family small guanosine triphosphatase (GTPase) and is a member of the RhoBTB subfamily, which is characterized by containing a GTPase domain (in most cases, non-functional) followed by a proline-rich region, tandem BTB domains, and a conserved C-terminal region. The carboxyl terminal extension that harbors two BTB domains is capable of assembling cullin 3-dependent ubiquitin ligase complexes. RhoBTB2 functions as a tumor suppressor that regulates the expression of the methyltransferase METTL7A. It also acts an adaptor of the Cullin-3-dependent E3 ubiquitin ligase complex. This model corresponds to the second BTB domain. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349668 [Multi-domain]  Cd Length: 124  Bit Score: 41.53  E-value: 6.46e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761  690 LSDVQFQTDSGEVLyAHKFVLYARCPLLIQYVnneGFSAVEDGvlTQRVLLGDVSTEAARTFLHYLYTADTGLPPGLSS- 768
Cdd:cd18359    20 FSDVTFMLDDGTIS-AHKPLLISSCDWMAAMF---GGPFVESS--TTEVVFPYTSRSSMRAVLEYLYTGQFSSSPDLDDm 93
                          90       100
                  ....*....|....*....|
gi 767987761  769 ELSSLAHRFGVSELVHLCEQ 788
Cdd:cd18359    94 KLIILANRLCLPHLVALTEQ 113
BTB_POZ_BTBD18 cd18293
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in ...
692-786 1.15e-03

BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in BTB/POZ domain-containing protein 18 (BTBD18); BTBD18 acts as a specific controller for transcription activation through RNA polymerase II elongation at a subset of genomic PIWI-interacting RNA (piRNA) loci. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349602 [Multi-domain]  Cd Length: 120  Bit Score: 40.54  E-value: 1.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761  692 DVQFQTDsGEVLYAHKFVLYARCPLLiqyvnNEGFSAVEDGVLTQRVL-LGDVSTEAARTFLHYLYTADTGLPPGLSSEL 770
Cdd:cd18293    17 DVLLQAE-GESVPAHCCVLSACSPYL-----TERLSSEPPPAGQKVVLeLQGLKAHTLLKLVDFLYTSELEVSSEEAQDV 90
                          90
                  ....*....|....*.
gi 767987761  771 SSLAHRFGVSELVHLC 786
Cdd:cd18293    91 LAAARRLQISELESLC 106
BTB_POZ_BTBD3_6 cd18282
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in ...
684-788 3.62e-03

BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in BTB/POZ domain-containing proteins, BTBD3 and BTBD6; This family includes BTB/POZ domain-containing proteins BTBD3 and BTBD6, both of which are BTB-domain-containing Kelch-like proteins. BTBD3 controls dendrite orientation toward active axons in mammalian neocortex. BTBD6 is required for proper embryogenesis and plays an essential evolutionary conserved role during neuronal development. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349591 [Multi-domain]  Cd Length: 108  Bit Score: 38.92  E-value: 3.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761  684 MVNNPHLSDVQF---QTDSGEVLYAHKFVLYARCPLliqyvnnegFSAVEDGVL---TQRVLLGDVSTEAARTFLHYLYT 757
Cdd:cd18282     1 MFNNELMADVHFivgPPGGTQRIPAHKYVLATGSSV---------FYAMFYGGLaenKNEIEIPDVEPAAFLNLLRYLYC 71
                          90       100       110
                  ....*....|....*....|....*....|...
gi 767987761  758 ADTGLPPglSSELSSL--AHRFGVSELVHLCEQ 788
Cdd:cd18282    72 DEIDLEP--DTVLATLyaAKKYLVPHLARACVQ 102
BTB1_POZ_LZTR1 cd18308
first BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain ...
680-788 4.60e-03

first BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in leucine-zipper-like transcriptional regulator 1 (LZTR-1); LZTR-1 is a golgi BTB-kelch protein that is degraded upon induction of apoptosis. It may also function as a transcriptional regulator that plays a crucial role in embryogenesis. Germline loss-of-function mutations in LZTR-1 predispose to an inherited disorder of multiple schwannomas. LZTR-1 contains two BTB domains. This model corresponds to the first domain. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349617 [Multi-domain]  Cd Length: 156  Bit Score: 39.67  E-value: 4.60e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761  680 DFGAMVNNPHLSDVQFQT-DSGEVLYAHKFVLYARCPLLI---------------QYVNNEGFSAVEDGVLTQR-----V 738
Cdd:cd18308    13 DFGRLLESRQFCDVEFIVgEEEERIPAHIAFVAARSKWLRnkilqarerqkqkaeQEVEDEGSEADSSSASKNDspmleV 92
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767987761  739 LLGDVSTEAARTFLHYLYT-----ADTGLPPG------LSSELSSLAHRFGVSELVHLCEQ 788
Cdd:cd18308    93 RLPEADPEAFELILSFIYTdkidpTRKGQDPGsnevvlLMMDVYRLALQFQMSRLEQLCVQ 153
BTB_POZ_SPOP-like cd18279
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in ...
676-789 6.21e-03

BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in speckle-type POZ protein (SPOP) and similar proteins; This family includes speckle-type POZ protein (SPOP), speckle-type POZ protein-like (SPOPL), TD and POZ domain-containing proteins (TDPOZ), Drosophila melanogaster protein roadkill and similar proteins. Both, SPOP and SPOPL, serve as adaptors of cullin-RING-based BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complexes that mediate the ubiquitination and proteasomal degradation of target proteins. TDPOZ is a family of bipartite animal and plant proteins that contain a tumor necrosis factor receptor-associated factor (TRAF) domain (TD) and a POZ/BTB domains. TDPOZ proteins may be nuclear scaffold proteins probably involved in transcription regulation in early development and other cellular processes. Drosophila melanogaster protein roadkill, also called Hh-induced MATH and BTB domain-containing protein (HIB), is a hedgehog-induced BTB protein that modulates hedgehog signaling by degrading Ci/Gli transcription factor. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349588 [Multi-domain]  Cd Length: 120  Bit Score: 38.66  E-value: 6.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761  676 LLVADFGAMVNNPHLSDVQFQTdSGEVLYAHKFVLYARCPLLIQYVNNEgfsaVEDGVLTqRVLLGDVSTEAARTFLHYL 755
Cdd:cd18279     4 RLAEDLGNLWENSRFTDCCLCV-GGQEFQAHKAILAARSPVFSAMFEHE----MEESKKN-RVEINDVDPEVFKEMMRFI 77
                          90       100       110
                  ....*....|....*....|....*....|....
gi 767987761  756 YTADTGLPPGLSSELSSLAHRFGVSELVHLCEQV 789
Cdd:cd18279    78 YTGKAPNLDKMADDLLAAADKYALERLKVMCEDA 111
BTB2_POZ_IBtk cd18302
second BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain ...
688-787 7.93e-03

second BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in inhibitor of Bruton tyrosine kinase (IBtk); IBtk is an inhibitor or negative regulator of Bruton tyrosine kinase (Btk), which is required for B-cell differentiation and development. IBtk binds to the PH domain of Btk and down-regulates the Btk kinase activity. It contains two BTB domains. This model corresponds to the second BTB domain. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349611 [Multi-domain]  Cd Length: 113  Bit Score: 38.11  E-value: 7.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767987761  688 PHLSDVQFQTDSGEVLYAHKFVLYARcpllIQYVNNEGFSAVEDGVLTQRVLLgDVSTEAARTFLHYLYTADT-GLPPGL 766
Cdd:cd18302     3 SDLYDVTIVSEDGKEFPCHKCVLVAR----LEYFHSMLSSSWIEASSCSALTM-PIPSDILEIILDYLYTDEAsAVKESQ 77
                          90       100
                  ....*....|....*....|....*
gi 767987761  767 SSELSS----LAHRFGVSELVHLCE 787
Cdd:cd18302    78 NVEFLCnvlvIADQLLITRLKEICE 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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