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Conserved domains on  [gi|768006891|ref|XP_011524835|]
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proline and serine-rich protein 3 isoform X9 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
400-519 1.84e-06

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK14951:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 618  Bit Score: 51.25  E-value: 1.84e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891 400 PPTQQASTLAHLGSTLAPPASLASTLEPPASTPAPLASTLAPPASTPAPLAC-TPAPPASTLASPAVPQGLPI------- 471
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPpAAAPPAPVAAPAAAAPAAAPaaapaav 445

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 768006891 472 ---PDPSSCAQPKSLGPKSRRSRAPRPEAAEQVPAAGQGPGPQLRGVLGQV 519
Cdd:PRK14951 446 alaPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDV 496
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 269-623 2.83e-05

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.01  E-value: 2.83e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891  269 PAPAPASSQAPLRPEDdilyqwrqrRKLEQAQGSKGDRAWVPPLTPALRTLI-----SLICLQTSPAPVETLSSLGTQPN 343
Cdd:PHA03247 2560 PPAAPDRSVPPPRPAP---------RPSEPAVTSRARRPDAPPQSARPRAPVddrgdPRGPAPPSPLPPDTHAPDPPPPS 2630

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891  344 HVPLWSSVAQPGPPEAFYVERPPF----PSVSSPHIFWAPSSHGFFWAPQSGpWVSLGAVPPTQQASTLAHLGSTLAPPA 419
Cdd:PHA03247 2631 PSPAANEPDPHPPPTVPPPERPRDdpapGRVSRPRRARRLGRAAQASSPPQR-PRRRAARPTVGSLTSLADPPPPPPTPE 2709

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891  420 SLASTLEPPASTP-APLASTLAPPASTPAPLACTPAPPASTLASPAVPQGLPIPDPSSCAQPKSLGPKSRRSRAPRPEAA 498
Cdd:PHA03247 2710 PAPHALVSATPLPpGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVA 2789

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891  499 EQVPAAGQGPGPQlrgVLGQVVAARLFPDSLEDTPPHFEGPPPPKAGSpkVQATQPQTKVTPPPSESQC----------- 567
Cdd:PHA03247 2790 SLSESRESLPSPW---DPADPPAAVLAPAAALPPAASPAGPLPPPTSA--QPTAPPPPPGPPPPSLPLGgsvapggdvrr 2864

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 768006891  568 RAKAESLKAKALPPAAGSVIRKSEATPSPGACLQPEVPLSPAEQATTVKASPPAFQ 623
Cdd:PHA03247 2865 RPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQ 2920
 
Name Accession Description Interval E-value
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 400-519 1.84e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 51.25  E-value: 1.84e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891 400 PPTQQASTLAHLGSTLAPPASLASTLEPPASTPAPLASTLAPPASTPAPLAC-TPAPPASTLASPAVPQGLPI------- 471
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPpAAAPPAPVAAPAAAAPAAAPaaapaav 445

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 768006891 472 ---PDPSSCAQPKSLGPKSRRSRAPRPEAAEQVPAAGQGPGPQLRGVLGQV 519
Cdd:PRK14951 446 alaPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDV 496
PHA03247 PHA03247
large tegument protein UL36; Provisional
 269-623 2.83e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.01  E-value: 2.83e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891  269 PAPAPASSQAPLRPEDdilyqwrqrRKLEQAQGSKGDRAWVPPLTPALRTLI-----SLICLQTSPAPVETLSSLGTQPN 343
Cdd:PHA03247 2560 PPAAPDRSVPPPRPAP---------RPSEPAVTSRARRPDAPPQSARPRAPVddrgdPRGPAPPSPLPPDTHAPDPPPPS 2630

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891  344 HVPLWSSVAQPGPPEAFYVERPPF----PSVSSPHIFWAPSSHGFFWAPQSGpWVSLGAVPPTQQASTLAHLGSTLAPPA 419
Cdd:PHA03247 2631 PSPAANEPDPHPPPTVPPPERPRDdpapGRVSRPRRARRLGRAAQASSPPQR-PRRRAARPTVGSLTSLADPPPPPPTPE 2709

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891  420 SLASTLEPPASTP-APLASTLAPPASTPAPLACTPAPPASTLASPAVPQGLPIPDPSSCAQPKSLGPKSRRSRAPRPEAA 498
Cdd:PHA03247 2710 PAPHALVSATPLPpGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVA 2789

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891  499 EQVPAAGQGPGPQlrgVLGQVVAARLFPDSLEDTPPHFEGPPPPKAGSpkVQATQPQTKVTPPPSESQC----------- 567
Cdd:PHA03247 2790 SLSESRESLPSPW---DPADPPAAVLAPAAALPPAASPAGPLPPPTSA--QPTAPPPPPGPPPPSLPLGgsvapggdvrr 2864

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 768006891  568 RAKAESLKAKALPPAAGSVIRKSEATPSPGACLQPEVPLSPAEQATTVKASPPAFQ 623
Cdd:PHA03247 2865 RPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQ 2920
 
Name Accession Description Interval E-value
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 400-519 1.84e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 51.25  E-value: 1.84e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891 400 PPTQQASTLAHLGSTLAPPASLASTLEPPASTPAPLASTLAPPASTPAPLAC-TPAPPASTLASPAVPQGLPI------- 471
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPpAAAPPAPVAAPAAAAPAAAPaaapaav 445

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 768006891 472 ---PDPSSCAQPKSLGPKSRRSRAPRPEAAEQVPAAGQGPGPQLRGVLGQV 519
Cdd:PRK14951 446 alaPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDV 496
PHA03247 PHA03247
large tegument protein UL36; Provisional
 269-623 2.83e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.01  E-value: 2.83e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891  269 PAPAPASSQAPLRPEDdilyqwrqrRKLEQAQGSKGDRAWVPPLTPALRTLI-----SLICLQTSPAPVETLSSLGTQPN 343
Cdd:PHA03247 2560 PPAAPDRSVPPPRPAP---------RPSEPAVTSRARRPDAPPQSARPRAPVddrgdPRGPAPPSPLPPDTHAPDPPPPS 2630

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891  344 HVPLWSSVAQPGPPEAFYVERPPF----PSVSSPHIFWAPSSHGFFWAPQSGpWVSLGAVPPTQQASTLAHLGSTLAPPA 419
Cdd:PHA03247 2631 PSPAANEPDPHPPPTVPPPERPRDdpapGRVSRPRRARRLGRAAQASSPPQR-PRRRAARPTVGSLTSLADPPPPPPTPE 2709

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891  420 SLASTLEPPASTP-APLASTLAPPASTPAPLACTPAPPASTLASPAVPQGLPIPDPSSCAQPKSLGPKSRRSRAPRPEAA 498
Cdd:PHA03247 2710 PAPHALVSATPLPpGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVA 2789

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891  499 EQVPAAGQGPGPQlrgVLGQVVAARLFPDSLEDTPPHFEGPPPPKAGSpkVQATQPQTKVTPPPSESQC----------- 567
Cdd:PHA03247 2790 SLSESRESLPSPW---DPADPPAAVLAPAAALPPAASPAGPLPPPTSA--QPTAPPPPPGPPPPSLPLGgsvapggdvrr 2864

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 768006891  568 RAKAESLKAKALPPAAGSVIRKSEATPSPGACLQPEVPLSPAEQATTVKASPPAFQ 623
Cdd:PHA03247 2865 RPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQ 2920
PHA03247 PHA03247
large tegument protein UL36; Provisional
 233-620 3.13e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.63  E-value: 3.13e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891  233 SDGLSPFSETFIPDSSKGLGPRAPASPAPAQaqtptPAPAPASSQAPLRPEDDILYQWRQRRKLEQAQGSKGDRAWVPPL 312
Cdd:PHA03247 2484 AEARFPFAAGAAPDPGGGGPPDPDAPPAPSR-----LAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGDPPPPLPPA 2558

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891  313 TPALRTLISLICLQTSPAPVE-TLSSLGTQPNHVPLWSSVAQPG-PPEAFYVERPPFPSVSSPHIFWAPSSHGFFWAPQS 390
Cdd:PHA03247 2559 APPAAPDRSVPPPRPAPRPSEpAVTSRARRPDAPPQSARPRAPVdDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEP 2638

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891  391 GPWVSLGAVPPTQQASTlahlgstlapPASLASTLEPPASTPAPLASTLAPPASTPAPLACTPAPPASTLASPAVPQGLP 470
Cdd:PHA03247 2639 DPHPPPTVPPPERPRDD----------PAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTP 2708

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891  471 IPDP--SSCAQPKSLGPKSRRSRAPRPEAAEQVPAAGQGPgpqlrgvlgqvvaarLFPDSLEDTPPHFEGPPPPKAGSPK 548
Cdd:PHA03247 2709 EPAPhaLVSATPLPPGPAAARQASPALPAAPAPPAVPAGP---------------ATPGGPARPARPPTTAGPPAPAPPA 2773

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 768006891  549 VQATQPQTKVTPPPSESQCRAKAESLKAKALPPAAGSVIRKSEATPSPGACLQPEVPLSPAEQATTVKASPP 620
Cdd:PHA03247 2774 APAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGP 2845
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
397-609 4.81e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 46.79  E-value: 4.81e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891 397 GAVPPTQQASTLAhlgsTLAPPASLASTLEPPASTPAPLASTLAPPASTPAPLACTPAPPASTLASPAVPQGLPIPDPSS 476
Cdd:PRK12323 371 GAGPATAAAAPVA----QPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGG 446

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891 477 CAQPKSLGPKSRRSRAPRPEAAEQVPAAGQGPGPQLRGVLGQVVAARLFPDSLEDTPPHFEGPPPPKAGSPKVQAtqpQT 556
Cdd:PRK12323 447 APAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGW---VA 523

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 768006891 557 KVTPPPSESQCRAKAESLKAKALPPAAGSVIRKSEATPSPGACLQPEVPLSPA 609
Cdd:PRK12323 524 ESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDM 576
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 426-520 6.59e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 46.42  E-value: 6.59e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891  426 EPPASTPAPLASTLAPPASTPAPLACTPAPPASTLASPAVPQGLPIPDPSSCAQPKSlgpksrrSRAPRPEAAEQVPAAG 505
Cdd:PRK12270   40 STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP-------AAPPAAAAAAAPAAAA 112

                          90
                  ....*....|....*.
gi 768006891  506 QGPGPQ-LRGVLGQVV 520
Cdd:PRK12270  113 VEDEVTpLRGAAAAVA 128
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 387-522 8.09e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 45.86  E-value: 8.09e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891 387 APQSGPWVSLGAVPPTQQASTLAHLGSTLAPPASLASTLEPPASTPAPLASTlAPPASTPAPLACTPAPPAstlasPAVP 466
Cdd:PRK14951 384 PEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPA-AAPAAAPAAVALAPAPPA-----QAAP 457

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 768006891 467 QGLPIPDPsscAQPKSLGPKSRRSRAPRPEAAEQVPAAgqgPGPQLRGVLGQVVAA 522
Cdd:PRK14951 458 ETVAIPVR---VAPEPAVASAAPAPAAAPAAARLTPTE---EGDVWHATVQQLAAA 507
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
396-501 2.36e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 44.38  E-value: 2.36e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891 396 LGAVPPTQQASTLAHLGStlapPASLASTLEPPASTPAPLASTLAPPASTPAPLAcTPAPPASTLASPAVPQGLPIPDPS 475
Cdd:PRK14971 384 TQPAAAPQPSAAAAASPS----PSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAA-VPVNPPSTAPQAVRPAQFKEEKKI 458

                         90       100
                 ....*....|....*....|....*.
gi 768006891 476 SCAQPKSLGPKSRRsraPRPEAAEQV 501
Cdd:PRK14971 459 PVSKVSSLGPSTLR---PIQEKAEQA 481
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
351-523 3.47e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.10  E-value: 3.47e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891 351 VAQPGPPEAFYVERPPFPSVSSPHIFWAPSSHGFFWAPQSGPwvslGAVPPTQQASTLAHLGSTLAPPASLASTLEPPAs 430
Cdd:PRK12323 382 VAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAP----ARRSPAPEALAAARQASARGPGGAPAPAPAPAA- 456

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891 431 TPAPLASTLAPPASTPAPLACTPAPPASTLASPA-----------VPQGLPIPDP----SSCAQPKSLGPKSRRSRAPRP 495
Cdd:PRK12323 457 APAAAARPAAAGPRPVAAAAAAAPARAAPAAAPApadddpppweeLPPEFASPAPaqpdAAPAGWVAESIPDPATADPDD 536

                        170       180
                 ....*....|....*....|....*...
gi 768006891 496 EAAEQVPAAGQGPGPQLRGVLGQVVAAR 523
Cdd:PRK12323 537 AFETLAPAPAAAPAPRAAAATEPVVAPR 564
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
378-511 8.26e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.91  E-value: 8.26e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891 378 APSSHGFFWAPQSGPWVSLGAVPPTQQASTLAHLGSTLAPPASLA-----STLEPPASTPAPLASTLAPPASTPAPLACT 452
Cdd:PRK07003 387 AAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAppataDRGDDAADGDAPVPAKANARASADSRCDER 466

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 768006891 453 PAPPASTLASPAVPQGLPIPDPSSCAQPKSLGPKSRRSRAPRPEAAEQVPAAGQGPGPQ 511
Cdd:PRK07003 467 DAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAA 525
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 387-522 9.30e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.67  E-value: 9.30e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891 387 APQSGPWVSLGAVPPTQQASTLAHLGSTLAPPASLAstlePPASTPAPLASTLAPPASTPAPlacTPAPPASTLASPAVP 466
Cdd:PRK07764 380 RLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAA----APAAAAAPAPAAAPQPAPAPAP---APAPPSPAGNAPAGG 452

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891 467 QGLPIPDPSSCAQPK---------SLGPKSRRSRAPRPEAAEQVPAA-----GQGPGPQLRGVLGQVVAA 522
Cdd:PRK07764 453 APSPPPAAAPSAQPApapaaapepTAAPAPAPPAAPAPAAAPAAPAApaapaGADDAATLRERWPEILAA 522
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 397-586 9.30e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.67  E-value: 9.30e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891 397 GAVPPTQQASTLAHLGSTLAPPASLASTLEPPASTPAPLASTLAPPASTPAPLACTPAPPASTLASPAV-----PQGLPI 471
Cdd:PRK07764 594 AAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDAsdggdGWPAKA 673

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891 472 PDPSSCAQPKSLGPKSRRSRAPRPEAAEQ-----VPAAGQGPGPQLRGVLGQVVAARLFPDSLEDTPPHFEGPPPPKAGS 546
Cdd:PRK07764 674 GGAAPAAPPPAPAPAAPAAPAGAAPAQPApapaaTPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAG 753

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 768006891 547 PKVQATQPQTKVTPPPSESQCRAKAESLKAKALPPAAGSV 586
Cdd:PRK07764 754 APAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSM 793
PHA03247 PHA03247
large tegument protein UL36; Provisional
 397-626 2.04e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.85  E-value: 2.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891  397 GAVPPTQQASTLAHLGSTLAPPASLASTLEPPASTPAPLASTLAPPASTPAPLACTPAPPASTLASPAVPQGLPIPDPSS 476
Cdd:PHA03247 2550 DPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPP 2629

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891  477 CAQPK-SLGPKSRRSRAPRPEAAEQVPAAGQGPGPQLRGVLGQVVAA---------RLFPDSLEDTPPHFEGPPPPKAGS 546
Cdd:PHA03247 2630 SPSPAaNEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQAssppqrprrRAARPTVGSLTSLADPPPPPPTPE 2709

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891  547 PKVQATQPQTKVTPPPSESQCRAKAESLKAKALPPAAGSVIRKSEATP-SPGACLQPEVPLSPAEQATTVKASPPAFQVG 625
Cdd:PHA03247 2710 PAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPaRPPTTAGPPAPAPPAAPAAGPPRRLTRPAVA 2789


                  .
gi 768006891  626 S 626
Cdd:PHA03247 2790 S 2790
PRK11855 PRK11855
dihydrolipoamide acetyltransferase; Reviewed
 412-512 2.87e-03

dihydrolipoamide acetyltransferase; Reviewed


Pssm-ID: 237000 [Multi-domain]  Cd Length: 547  Bit Score: 40.96  E-value: 2.87e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891 412 GSTLAPPASLASTLEPPASTPAPLASTLAPPASTPAPLACTPAPPASTLASPAVPQ-----GLPIpdpsscAQPKSLGPK 486
Cdd:PRK11855 196 AAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPAVRRlarelGVDL------SQVKGTGKK 269

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 768006891 487 SR----------RSRAPRPEAAEQVPAAGQGPGPQL 512
Cdd:PRK11855 270 GRitkedvqafvKGAMSAAAAAAAAAAAAGGGGLGL 305
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
428-621 5.12e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.22  E-value: 5.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891 428 PASTPAPLASTLAPPASTPAPLACTPAPPASTLASPAVPQGLPIPDPSSCAQPKSLGPKSRRSRAPRPEAAEQVPAAGQG 507
Cdd:PRK07003 360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRG 439

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891 508 PGPQLRGVLGQVVAARLFPDSLEDTPPHFEGPPPPKAGSPKVQATQPQTKVTPPPSESQCRAKAESLKAKALPPAAGSvi 587
Cdd:PRK07003 440 DDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAAS-- 517

                        170       180       190
                 ....*....|....*....|....*....|....
gi 768006891 588 RKSEATPspgaclqPEVPLSPAEQATTVKASPPA 621
Cdd:PRK07003 518 REDAPAA-------AAPPAPEARPPTPAAAAPAA 544
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 414-511 7.95e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 39.41  E-value: 7.95e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891 414 TLAPPASLASTLEPPASTPAPLASTLAPpASTPAPLACTPAPPASTLASPAVPQGLPI-PDPSSCAQPKSLGPKSRRSRA 492
Cdd:PRK14950 358 ALLVPVPAPQPAKPTAAAPSPVRPTPAP-STRPKAAAAANIPPKEPVRETATPPPVPPrPVAPPVPHTPESAPKLTRAAI 436

                         90
                 ....*....|....*....
gi 768006891 493 PRPEAAEqvpaaGQGPGPQ 511
Cdd:PRK14950 437 PVDEKPK-----YTPPAPP 450
PHA03378 PHA03378
EBNA-3B; Provisional
 392-530 9.81e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 39.28  E-value: 9.81e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768006891 392 PWVSLGAVPPTQQASTLAHlgstlaPPASLASTLEPPASTP---APLASTLAPPA------STPAPLACTPAPPASTLAS 462
Cdd:PHA03378 737 PAAAPGRARPPAAAPGRAR------PPAAAPGRARPPAAAPgapTPQPPPQAPPApqqrprGAPTPQPPPQAGPTSMQLM 810

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 768006891 463 PAVPQGLPIPDPSSCAQPKSLGPKSRRSRAPRPEAAEQVPAAGQGPGPQLRGVLGQVVAARLFPDSLE 530
Cdd:PHA03378 811 PRAAPGQQGPTKQILRQLLTGGVKRGRPSLKKPAALERQAAAGPTPSPGSGTSDKIVQAPVFYPPVLQ 878
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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