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Conserved domains on  [gi|768014510|ref|XP_011527677|]
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protein sel-1 homolog 2 isoform X4 [Homo sapiens]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11434433)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

Gene Ontology:  GO:0005515
PubMed:  10517866|30708253

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
TPR COG0790
TPR repeat [Signal transduction mechanisms];
151-408 5.44e-32

TPR repeat [Signal transduction mechanisms];


:

Pssm-ID: 223861 [Multi-domain]  Cd Length: 292  Bit Score: 125.54  E-value: 5.44e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768014510 151 DALLFGNFGVQNITAAIQLYESLAKEGSCKAQNALGFLSSYGIGMEYDQAKALIYYTFGSAGGNMMSQMILGYRYLSGIN 230
Cdd:COG0790    9 GKSLFAAAEENAVSTLGKLLSEGGDPLMAAVALKSALLNGAGSAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKG 88
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768014510 231 VLQNCEVALSYYKKVADyiadtfeksEGVPVEKVSLGQLHLIGRkGLDQDYYKALHYFLKAAKAGSANAMA---FIGKMY 307
Cdd:COG0790   89 VSRDKTKAADWYRCAAA---------DGLAEALFNLGLMYANGR-GVPLDLVKALKYYEKAAKLGNVEAALamyRLGLAY 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768014510 308 LEGNA--AVPQNNATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVPLNYAEALKYFQKAAEKGWPDAQFQLGFMYYSGSG 385
Cdd:COG0790  159 LSGLQalAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLGLMYLNGEG 238
                        250       260       270
                 ....*....|....*....|....*....|...
gi 768014510 386 IWK----------DYKLAFKYFYLASQSGQPLA 408
Cdd:COG0790  239 VKKaafltaakeeDKKQALEWLQKACELGFDNA 271
TPR COG0790
TPR repeat [Signal transduction mechanisms];
299-588 3.71e-27

TPR repeat [Signal transduction mechanisms];


:

Pssm-ID: 223861 [Multi-domain]  Cd Length: 292  Bit Score: 111.67  E-value: 3.71e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768014510 299 AMAFIGKMYLEGNAAvPQNNATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVPLNYAEALKYFQKAAEKGWPDAQFQLGF 378
Cdd:COG0790    3 FALLLSGKSLFAAAE-ENAVSTLGKLLSEGGDPLMAAVALKSALLNGAGSAYPPDYAKALKSYEKAAELGDAAALALLGQ 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768014510 379 MYYSGSGIWKDYKLAFKYFYLASQSGQPLAIYYLAKMYATGTGVVRSCRTAVELYKGVCELGHwAEKFLTAYFAYkdgdi 458
Cdd:COG0790   82 MYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGN-VEAALAMYRLG----- 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768014510 459 dsslvQYALLAEMGYEVAQSnsafileskkanilekekmYPMALLLWNRAAIQGNAFARVKIGDYHYYGYGTKKDYQTAA 538
Cdd:COG0790  156 -----LAYLSGLQALAVAYD-------------------DKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAF 211
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 768014510 539 THYSIAANKyHNAQAMFNLAYMYEHGLGITKDIH----------LARRLYDMAAQTSPDA 588
Cdd:COG0790  212 RWYKKAAEQ-GDGAACYNLGLMYLNGEGVKKAAFltaakeedkkQALEWLQKACELGFDN 270
Mplasa_alph_rch super family cl37461
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
18-128 4.19e-05

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


The actual alignment was detected with superfamily member TIGR04523:

Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 46.55  E-value: 4.19e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768014510   18 IKTIKAEEHNKRQKERNVTTQVS-----VNEIKQYLSHILEQRTSSNV--------INKRENLLEKKKNQRKIRIKGIQN 84
Cdd:TIGR04523 309 NKELKSELKNQEKKLEEIQNQISqnnkiISQLNEQISQLKKELTNSESensekqreLEEKQNEIEKLKKENQSYKQEIKN 388
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 768014510   85 kdiLKRNKNHLQKQAEKNftDEGDQLFKMGIKVLQQSKSQKQKE 128
Cdd:TIGR04523 389 ---LESQINDLESKIQNQ--EKLNQQKDEQIKKLQQEKELLEKE 427
 
Name Accession Description Interval E-value
TPR COG0790
TPR repeat [Signal transduction mechanisms];
151-408 5.44e-32

TPR repeat [Signal transduction mechanisms];


Pssm-ID: 223861 [Multi-domain]  Cd Length: 292  Bit Score: 125.54  E-value: 5.44e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768014510 151 DALLFGNFGVQNITAAIQLYESLAKEGSCKAQNALGFLSSYGIGMEYDQAKALIYYTFGSAGGNMMSQMILGYRYLSGIN 230
Cdd:COG0790    9 GKSLFAAAEENAVSTLGKLLSEGGDPLMAAVALKSALLNGAGSAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKG 88
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768014510 231 VLQNCEVALSYYKKVADyiadtfeksEGVPVEKVSLGQLHLIGRkGLDQDYYKALHYFLKAAKAGSANAMA---FIGKMY 307
Cdd:COG0790   89 VSRDKTKAADWYRCAAA---------DGLAEALFNLGLMYANGR-GVPLDLVKALKYYEKAAKLGNVEAALamyRLGLAY 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768014510 308 LEGNA--AVPQNNATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVPLNYAEALKYFQKAAEKGWPDAQFQLGFMYYSGSG 385
Cdd:COG0790  159 LSGLQalAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLGLMYLNGEG 238
                        250       260       270
                 ....*....|....*....|....*....|...
gi 768014510 386 IWK----------DYKLAFKYFYLASQSGQPLA 408
Cdd:COG0790  239 VKKaafltaakeeDKKQALEWLQKACELGFDNA 271
TPR COG0790
TPR repeat [Signal transduction mechanisms];
299-588 3.71e-27

TPR repeat [Signal transduction mechanisms];


Pssm-ID: 223861 [Multi-domain]  Cd Length: 292  Bit Score: 111.67  E-value: 3.71e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768014510 299 AMAFIGKMYLEGNAAvPQNNATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVPLNYAEALKYFQKAAEKGWPDAQFQLGF 378
Cdd:COG0790    3 FALLLSGKSLFAAAE-ENAVSTLGKLLSEGGDPLMAAVALKSALLNGAGSAYPPDYAKALKSYEKAAELGDAAALALLGQ 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768014510 379 MYYSGSGIWKDYKLAFKYFYLASQSGQPLAIYYLAKMYATGTGVVRSCRTAVELYKGVCELGHwAEKFLTAYFAYkdgdi 458
Cdd:COG0790   82 MYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGN-VEAALAMYRLG----- 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768014510 459 dsslvQYALLAEMGYEVAQSnsafileskkanilekekmYPMALLLWNRAAIQGNAFARVKIGDYHYYGYGTKKDYQTAA 538
Cdd:COG0790  156 -----LAYLSGLQALAVAYD-------------------DKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAF 211
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 768014510 539 THYSIAANKyHNAQAMFNLAYMYEHGLGITKDIH----------LARRLYDMAAQTSPDA 588
Cdd:COG0790  212 RWYKKAAEQ-GDGAACYNLGLMYLNGEGVKKAAFltaakeedkkQALEWLQKACELGFDN 270
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
551-583 1.76e-06

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 44.82  E-value: 1.76e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 768014510  551 AQAMFNLAYMYEHGLGITKDIHLARRLYDMAAQ 583
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAE 33
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
551-583 2.06e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 44.47  E-value: 2.06e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 768014510   551 AQAMFNLAYMYEHGLGITKDIHLARRLYDMAAQ 583
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAE 33
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
370-404 2.88e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 44.09  E-value: 2.88e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 768014510   370 PDAQFQLGFMYYSGSGIWKDYKLAFKYFYLASQSG 404
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
334-368 7.89e-06

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 42.89  E-value: 7.89e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 768014510  334 AIGLHGLGLLYFHGKGVPLNYAEALKYFQKAAEKG 368
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
18-128 4.19e-05

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 46.55  E-value: 4.19e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768014510   18 IKTIKAEEHNKRQKERNVTTQVS-----VNEIKQYLSHILEQRTSSNV--------INKRENLLEKKKNQRKIRIKGIQN 84
Cdd:TIGR04523 309 NKELKSELKNQEKKLEEIQNQISqnnkiISQLNEQISQLKKELTNSESensekqreLEEKQNEIEKLKKENQSYKQEIKN 388
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 768014510   85 kdiLKRNKNHLQKQAEKNftDEGDQLFKMGIKVLQQSKSQKQKE 128
Cdd:TIGR04523 389 ---LESQINDLESKIQNQ--EKLNQQKDEQIKKLQQEKELLEKE 427
 
Name Accession Description Interval E-value
TPR COG0790
TPR repeat [Signal transduction mechanisms];
151-408 5.44e-32

TPR repeat [Signal transduction mechanisms];


Pssm-ID: 223861 [Multi-domain]  Cd Length: 292  Bit Score: 125.54  E-value: 5.44e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768014510 151 DALLFGNFGVQNITAAIQLYESLAKEGSCKAQNALGFLSSYGIGMEYDQAKALIYYTFGSAGGNMMSQMILGYRYLSGIN 230
Cdd:COG0790    9 GKSLFAAAEENAVSTLGKLLSEGGDPLMAAVALKSALLNGAGSAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKG 88
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768014510 231 VLQNCEVALSYYKKVADyiadtfeksEGVPVEKVSLGQLHLIGRkGLDQDYYKALHYFLKAAKAGSANAMA---FIGKMY 307
Cdd:COG0790   89 VSRDKTKAADWYRCAAA---------DGLAEALFNLGLMYANGR-GVPLDLVKALKYYEKAAKLGNVEAALamyRLGLAY 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768014510 308 LEGNA--AVPQNNATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVPLNYAEALKYFQKAAEKGWPDAQFQLGFMYYSGSG 385
Cdd:COG0790  159 LSGLQalAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLGLMYLNGEG 238
                        250       260       270
                 ....*....|....*....|....*....|...
gi 768014510 386 IWK----------DYKLAFKYFYLASQSGQPLA 408
Cdd:COG0790  239 VKKaafltaakeeDKKQALEWLQKACELGFDNA 271
TPR COG0790
TPR repeat [Signal transduction mechanisms];
299-588 3.71e-27

TPR repeat [Signal transduction mechanisms];


Pssm-ID: 223861 [Multi-domain]  Cd Length: 292  Bit Score: 111.67  E-value: 3.71e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768014510 299 AMAFIGKMYLEGNAAvPQNNATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVPLNYAEALKYFQKAAEKGWPDAQFQLGF 378
Cdd:COG0790    3 FALLLSGKSLFAAAE-ENAVSTLGKLLSEGGDPLMAAVALKSALLNGAGSAYPPDYAKALKSYEKAAELGDAAALALLGQ 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768014510 379 MYYSGSGIWKDYKLAFKYFYLASQSGQPLAIYYLAKMYATGTGVVRSCRTAVELYKGVCELGHwAEKFLTAYFAYkdgdi 458
Cdd:COG0790   82 MYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGN-VEAALAMYRLG----- 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768014510 459 dsslvQYALLAEMGYEVAQSnsafileskkanilekekmYPMALLLWNRAAIQGNAFARVKIGDYHYYGYGTKKDYQTAA 538
Cdd:COG0790  156 -----LAYLSGLQALAVAYD-------------------DKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAF 211
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 768014510 539 THYSIAANKyHNAQAMFNLAYMYEHGLGITKDIH----------LARRLYDMAAQTSPDA 588
Cdd:COG0790  212 RWYKKAAEQ-GDGAACYNLGLMYLNGEGVKKAAFltaakeedkkQALEWLQKACELGFDN 270
TPR COG0790
TPR repeat [Signal transduction mechanisms];
128-376 4.83e-22

TPR repeat [Signal transduction mechanisms];


Pssm-ID: 223861 [Multi-domain]  Cd Length: 292  Bit Score: 96.65  E-value: 4.83e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768014510 128 EEAYLLFAKAADMGNLKAMEKMADALLFGNFGVQNITAAIQLYESLAKEGSCKAQNALGFLSSYGIGMEYDQAKALIYYT 207
Cdd:COG0790   58 AKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYE 137
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768014510 208 FGSAGGN---MMSQMILGYRYLSGINvlqncevalsyykkvadyiadtfeksegvpvekvslgqlhligRKGLDQDYYKA 284
Cdd:COG0790  138 KAAKLGNveaALAMYRLGLAYLSGLQ-------------------------------------------ALAVAYDDKKA 174
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768014510 285 LHYFLKAAKAGSANAMAFIGKMYLEGnAAVPQNNATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVP----------LNY 354
Cdd:COG0790  175 LYLYRKAAELGNPDAQLLLGRMYEKG-LGVPRDLKKAFRWYKKAAEQGDGAACYNLGLMYLNGEGVKkaafltaakeEDK 253
                        250       260
                 ....*....|....*....|..
gi 768014510 355 AEALKYFQKAAEKGWPDAQFQL 376
Cdd:COG0790  254 KQALEWLQKACELGFDNACEAL 275
TPR COG0790
TPR repeat [Signal transduction mechanisms];
125-301 2.76e-14

TPR repeat [Signal transduction mechanisms];


Pssm-ID: 223861 [Multi-domain]  Cd Length: 292  Bit Score: 73.93  E-value: 2.76e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768014510 125 KQKEEAYLLFAKAADMGNLKAMEKMADALLFGNFGVQNITAAIQLYESLAKEGSCKAQNALGFLSSY------GIGMEYD 198
Cdd:COG0790   91 RDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAylsglqALAVAYD 170
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768014510 199 QAKALIYYTFGSAGGNMMSQMILGYRYLSGINVLQNCEVALSYYKKVADYIADTFEKSEGVPVEKVSLGQLHLIGRKGLD 278
Cdd:COG0790  171 DKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLGLMYLNGEGVKKAAFLTAAKE 250
                        170       180
                 ....*....|....*....|...
gi 768014510 279 QDYYKALHYFLKAAKAGSANAMA 301
Cdd:COG0790  251 EDKKQALEWLQKACELGFDNACE 273
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
551-583 1.76e-06

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 44.82  E-value: 1.76e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 768014510  551 AQAMFNLAYMYEHGLGITKDIHLARRLYDMAAQ 583
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAE 33
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
551-583 2.06e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 44.47  E-value: 2.06e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 768014510   551 AQAMFNLAYMYEHGLGITKDIHLARRLYDMAAQ 583
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAE 33
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
370-404 2.88e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 44.09  E-value: 2.88e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 768014510   370 PDAQFQLGFMYYSGSGIWKDYKLAFKYFYLASQSG 404
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
334-368 4.48e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 43.70  E-value: 4.48e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 768014510   334 AIGLHGLGLLYFHGKGVPLNYAEALKYFQKAAEKG 368
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
334-368 7.89e-06

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 42.89  E-value: 7.89e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 768014510  334 AIGLHGLGLLYFHGKGVPLNYAEALKYFQKAAEKG 368
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
18-128 4.19e-05

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 46.55  E-value: 4.19e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768014510   18 IKTIKAEEHNKRQKERNVTTQVS-----VNEIKQYLSHILEQRTSSNV--------INKRENLLEKKKNQRKIRIKGIQN 84
Cdd:TIGR04523 309 NKELKSELKNQEKKLEEIQNQISqnnkiISQLNEQISQLKKELTNSESensekqreLEEKQNEIEKLKKENQSYKQEIKN 388
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 768014510   85 kdiLKRNKNHLQKQAEKNftDEGDQLFKMGIKVLQQSKSQKQKE 128
Cdd:TIGR04523 389 ---LESQINDLESKIQNQ--EKLNQQKDEQIKKLQQEKELLEKE 427
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
406-441 1.27e-04

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 39.46  E-value: 1.27e-04
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 768014510   406 PLAIYYLAKMYATGTGVVRSCRTAVELYKGVCELGH 441
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
370-404 2.18e-04

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 38.66  E-value: 2.18e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 768014510  370 PDAQFQLGFMYYSGSGIWKDYKLAFKYFYLASQSG 404
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
297-333 3.61e-03

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 35.23  E-value: 3.61e-03
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 768014510   297 ANAMAFIGKMYLEGNAaVPQNNATAFKYFSMAASKGN 333
Cdd:smart00671   1 AEAQYNLGQMYEYGLG-VPKDLEKALEYYKKAAELGN 36
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
514-549 4.81e-03

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 35.23  E-value: 4.81e-03
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 768014510   514 AFARVKIGDYHYYGYGTKKDYQTAATHYSIAANKYH 549
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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