|
Name |
Accession |
Description |
Interval |
E-value |
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
766-1091 |
7.40e-78 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 258.82 E-value: 7.40e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 766 LARYLKRLQPGTLRARQLLELLHCAheaEEAGIWQHVVQELpaRLSFLGTRLTPP--DAHVLGKALEAAGqdfalDLRST 843
Cdd:cd00116 1 LQLSLKGELLKTERATELLPKLLCL---QVLRLEGNTLGEE--AAKALASALRPQpsLKELCLSLNETGR-----IPRGL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 844 GIDPSGLGSLVGLSCVTHFRAALS-DTVALWESLRQ---HGETELLQAAEEKfTIEPFKAKSLKDV-EDLGKLVQTQRTR 918
Cdd:cd00116 71 QSLLQGLTKGCGLQELDLSDNALGpDGCGVLESLLRsssLQELKLNNNGLGD-RGLRLLAKGLKDLpPALEKLVLGRNRL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 919 S--SSEDTAGELPAVRDLKKLEFALGPIsGPQAFPKLVRILTAFSSLQHLDLDalsENKIGDEGVSQLSATFPQLKSLET 996
Cdd:cd00116 150 EgaSCEALAKALRANRDLKELNLANNGI-GDAGIRALAEGLKANCNLEVLDLN---NNGLTDEGASALAETLASLKSLEV 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 997 LNLSQNSITDLGAYKLAEGLPSLAASLLRLSLYNNCICDMGAESLARVLPDMVSLRVMDVQYNKFTAAGaQQLAASLRKC 1076
Cdd:cd00116 226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG-AQLLAESLLE 304
|
330
....*....|....*
gi 1622915399 1077 PHVETLAMWTPTIPF 1091
Cdd:cd00116 305 PGNELESLWVKDDSF 319
|
|
| NACHT |
pfam05729 |
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in ... |
391-560 |
6.94e-49 |
|
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Pssm-ID: 428606 [Multi-domain] Cd Length: 166 Bit Score: 170.95 E-value: 6.94e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 391 QVIAMLGKAGQGKSYWAGAVSRAWACGRLPQY-DFVFSVPCHCLNRPGDVYRLQDLLFSLGPRPLVAADEVFSHIVKRPD 469
Cdd:pfam05729 1 RTVILQGEAGSGKTTLLQKLALLWAQGKLPQGfDFVFFLPCRELSRSGNARSLADLLFSQWPEPAAPVSEVWAVILELPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 470 RILLILDAFEELEAQDGFLHStcgpalaePCSLRGLLAGLFQKKLLRGCTLLLTARPRGR--LVQSLSKADaLFELSGFS 547
Cdd:pfam05729 81 RLLLILDGLDELVSDLGQLDG--------PCPVLTLLSSLLRKKLLPGASLLLTVRPDALrdLRRGLEEPR-YLEVRGFS 151
|
170
....*....|...
gi 1622915399 548 MEQAQAYVMRYFE 560
Cdd:pfam05729 152 ESDRKQYVRKYFS 164
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
961-1082 |
8.88e-12 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 68.66 E-value: 8.88e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 961 SSLQHLDLdalSENKIGDEGVSQLSATFPQLKSLETLNLSQNSITDLGAYKLAEGLPSLAASLLRLSLYNNcICDMGAES 1040
Cdd:COG5238 264 TTVETLYL---SGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIGDEGAIALAEGLQGNKTLHTLNLAYNG-IGAQGAIA 339
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1622915399 1041 LARVLPDMVSLRVMDVQYNKFTAAGAQQLAASLRKCPHVETL 1082
Cdd:COG5238 340 LAKALQENTTLHSLDLSDNQIGDEGAIALAKYLEGNTTLREL 381
|
|
| NLRC4_HD2 |
pfam17776 |
NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein ... |
690-795 |
1.13e-04 |
|
NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein and NOD2 protein.
Pssm-ID: 465499 [Multi-domain] Cd Length: 122 Bit Score: 43.05 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 690 LQCFLGALWLALSGEIKDKELPQYLaLTPRKKRPYDNWLEGVP-----------RFLTGLIFQPRARCLGALVGPSATAf 758
Cdd:pfam17776 4 FQEFFAALFYVLSFKEEKSNPLKEF-FGLRKRESLKSLLDKALksknghldlflRFLFGLLNEENQRLLEGLLGCKLSS- 81
|
90 100 110
....*....|....*....|....*....|....*..
gi 1622915399 759 adRKQKVLARYLKRLQPGTLRARQLLELLHCAHEAEE 795
Cdd:pfam17776 82 --EIKQELLQWIKSLIQKELSSERFLNLFHCLYELQD 116
|
|
| LRR_RI |
smart00368 |
Leucine rich repeat, ribonuclease inhibitor type; |
991-1016 |
1.02e-03 |
|
Leucine rich repeat, ribonuclease inhibitor type;
Pssm-ID: 197686 [Multi-domain] Cd Length: 28 Bit Score: 37.39 E-value: 1.02e-03
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
766-1091 |
7.40e-78 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 258.82 E-value: 7.40e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 766 LARYLKRLQPGTLRARQLLELLHCAheaEEAGIWQHVVQELpaRLSFLGTRLTPP--DAHVLGKALEAAGqdfalDLRST 843
Cdd:cd00116 1 LQLSLKGELLKTERATELLPKLLCL---QVLRLEGNTLGEE--AAKALASALRPQpsLKELCLSLNETGR-----IPRGL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 844 GIDPSGLGSLVGLSCVTHFRAALS-DTVALWESLRQ---HGETELLQAAEEKfTIEPFKAKSLKDV-EDLGKLVQTQRTR 918
Cdd:cd00116 71 QSLLQGLTKGCGLQELDLSDNALGpDGCGVLESLLRsssLQELKLNNNGLGD-RGLRLLAKGLKDLpPALEKLVLGRNRL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 919 S--SSEDTAGELPAVRDLKKLEFALGPIsGPQAFPKLVRILTAFSSLQHLDLDalsENKIGDEGVSQLSATFPQLKSLET 996
Cdd:cd00116 150 EgaSCEALAKALRANRDLKELNLANNGI-GDAGIRALAEGLKANCNLEVLDLN---NNGLTDEGASALAETLASLKSLEV 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 997 LNLSQNSITDLGAYKLAEGLPSLAASLLRLSLYNNCICDMGAESLARVLPDMVSLRVMDVQYNKFTAAGaQQLAASLRKC 1076
Cdd:cd00116 226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG-AQLLAESLLE 304
|
330
....*....|....*
gi 1622915399 1077 PHVETLAMWTPTIPF 1091
Cdd:cd00116 305 PGNELESLWVKDDSF 319
|
|
| NACHT |
pfam05729 |
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in ... |
391-560 |
6.94e-49 |
|
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Pssm-ID: 428606 [Multi-domain] Cd Length: 166 Bit Score: 170.95 E-value: 6.94e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 391 QVIAMLGKAGQGKSYWAGAVSRAWACGRLPQY-DFVFSVPCHCLNRPGDVYRLQDLLFSLGPRPLVAADEVFSHIVKRPD 469
Cdd:pfam05729 1 RTVILQGEAGSGKTTLLQKLALLWAQGKLPQGfDFVFFLPCRELSRSGNARSLADLLFSQWPEPAAPVSEVWAVILELPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 470 RILLILDAFEELEAQDGFLHStcgpalaePCSLRGLLAGLFQKKLLRGCTLLLTARPRGR--LVQSLSKADaLFELSGFS 547
Cdd:pfam05729 81 RLLLILDGLDELVSDLGQLDG--------PCPVLTLLSSLLRKKLLPGASLLLTVRPDALrdLRRGLEEPR-YLEVRGFS 151
|
170
....*....|...
gi 1622915399 548 MEQAQAYVMRYFE 560
Cdd:pfam05729 152 ESDRKQYVRKYFS 164
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
961-1082 |
8.88e-12 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 68.66 E-value: 8.88e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 961 SSLQHLDLdalSENKIGDEGVSQLSATFPQLKSLETLNLSQNSITDLGAYKLAEGLPSLAASLLRLSLYNNcICDMGAES 1040
Cdd:COG5238 264 TTVETLYL---SGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIGDEGAIALAEGLQGNKTLHTLNLAYNG-IGAQGAIA 339
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1622915399 1041 LARVLPDMVSLRVMDVQYNKFTAAGAQQLAASLRKCPHVETL 1082
Cdd:COG5238 340 LAKALQENTTLHSLDLSDNQIGDEGAIALAKYLEGNTTLREL 381
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
964-1099 |
1.23e-11 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 68.28 E-value: 1.23e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 964 QHLDLDALSENKIGDEGVSQLSATFPQLKSLETLNLSQNSITDLGAYKLAEGLpSLAASLLRLSLYNNCICDMGAESLAR 1043
Cdd:COG5238 180 NSVETVYLGCNQIGDEGIEELAEALTQNTTVTTLWLKRNPIGDEGAEILAEAL-KGNKSLTTLDLSNNQIGDEGVIALAE 258
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 1044 VLPDMVSLRVMDVQYNKFTAAGAQQLAASLRKCPHVETLAMWTPTIPF----SVQEHLQQ 1099
Cdd:COG5238 259 ALKNNTTVETLYLSGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIGDegaiALAEGLQG 318
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
953-1104 |
2.44e-11 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 67.12 E-value: 2.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 953 LVRILTAFSSLQHLDLdalSENKIGDEGVSQLSATFPQLKSLETLNLSQNSITDLGAYKLAEGLpSLAASLLRLSLYNNC 1032
Cdd:COG5238 284 LAKALQGNTTLTSLDL---SVNRIGDEGAIALAEGLQGNKTLHTLNLAYNGIGAQGAIALAKAL-QENTTLHSLDLSDNQ 359
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622915399 1033 ICDMGAESLARVLPDMVSLRVMDVQYNKFTAAGAQQLAASLRKcPHVETLAMWTPTIPFSVQEHLQQQDSRI 1104
Cdd:COG5238 360 IGDEGAIALAKYLEGNTTLRELNLGKNNIGKQGAEALIDALQT-NRLHTLILDGNLIGAEAQQRLEQLLERI 430
|
|
| NACHT |
COG5635 |
Predicted NTPase, NACHT family domain [Signal transduction mechanisms]; |
278-972 |
3.97e-08 |
|
Predicted NTPase, NACHT family domain [Signal transduction mechanisms];
Pssm-ID: 444362 [Multi-domain] Cd Length: 935 Bit Score: 57.89 E-value: 3.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 278 PEPALISRANMTEHKTSPTQRQAAGEVSNKLPKWPESVEQFYRSLQDTYRAEPTGPDGILMEVDLVQARLERSSSKSLER 357
Cdd:COG5635 63 SRSALSAAALLARALSALLLVLLLLESLLLLLLLLLLLAEALLALLELAALLKAVLLSLSGGSDLVLLLSESDLLLALLI 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 358 ELATPDWAERQLAQGGLAEGLLAAKEHRRPRET-----QVIAMLGKAGQGKS----YWAgavSRAWACGRLPQYDFVFSV 428
Cdd:COG5635 143 LLLDADGLLVSLDDLYVPLNLLERIESLKRLELleakkKRLLILGEPGSGKTtllrYLA---LELAERYLDAEDPIPILI 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 429 PCHCLNRPGDvyrLQDLLFSLGPRPLVAADEVFSHIVKRpDRILLILDAFEELEAQDGFLHstcgpalaepcsLRGLLAG 508
Cdd:COG5635 220 ELRDLAEEAS---LEDLLAEALEKRGGEPEDALERLLRN-GRLLLLLDGLDEVPDEADRDE------------VLNQLRR 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 509 LFQKklLRGCTLLLTARPRGRLVQSLSKADAlFELSGFSMEQAQAYVMRYFECsgMTEHQDRALALLRDRPFLLSHSHSP 588
Cdd:COG5635 284 FLER--YPKARVIITSRPEGYDSSELEGFEV-LELAPLSDEQIEEFLKKWFEA--TERKAERLLEALEENPELRELARNP 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 589 TLCQAVCQLsealleLGEDAELPSTLTGLYVGLL---------GRAALNGPPGALAE----LAKLAWELgrrHQStlQEN 655
Cdd:COG5635 359 LLLTLLALL------LRERGELPDTRAELYEQFVelllerwdeQRGLTIYRELSREElrelLSELALAM---QEN--GRT 427
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 656 QFPSADVRTWAMAKGLVQHPPGATESELAFPSFLLQC---------------FLGALWLAlsgeikdkELPQYLALTPRK 720
Cdd:COG5635 428 EFAREELEEILREYLGRRKDAEALLDELLLRTGLLVErgegrysfahrsfqeYLAARALV--------EELDEELLELLA 499
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 721 KRPYDNWLEGVPRFLTGLIFQPRARCL---GALVGPSATAFADRKQKVLARYLKRLQPGTLRARQLLELLHCAHEAEEAG 797
Cdd:COG5635 500 EHLEDPRWREVLLLLAGLLDDVKQIKElidALLARDDAAALALAAALLLALLLALALLALLALLLLLRLLLALLALLLLA 579
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 798 IWQHVVQELPARLSFLGTRLTPPDAHVLGKALEAAGQDFALDLRSTGIDPSGLGSLVGL--SCVTHFRAALSDTVALWES 875
Cdd:COG5635 580 LLLLLLLALLLALLALDLGLAALLLLLLLLLLLLLLLALALLLALLLLLLLLLLAELLLlaLLALVLLSLLLASRLLLIT 659
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 876 LRQHGETELLQAAEEKFTIEPFKAKSLKDVEDLGKLVQTQRTRSSSEDTAGELPAVRDLKKLEFALGPISGPQAFPKLVR 955
Cdd:COG5635 660 LLLLAAASAALLLLLLLLLAELLLALLALASLLLLLLLALALALALLLLAVLLAAALDLLLLLVLLLALLLVLALALSLL 739
|
730
....*....|....*..
gi 1622915399 956 ILTAFSSLQHLDLDALS 972
Cdd:COG5635 740 LLALALLLAGALLLESS 756
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
782-1016 |
3.53e-05 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 47.48 E-value: 3.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 782 QLLELLHCAHEAEEAGIWQHVVQELPARLSFLGT-RLTPPDAHVLGKALEAAGQDFALDLRSTGIDPSGLGSLV----GL 856
Cdd:COG5238 156 VHLLGLAARLGLLAAISMAKALQNNSVETVYLGCnQIGDEGIEELAEALTQNTTVTTLWLKRNPIGDEGAEILAealkGN 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 857 SCVTHFraALSDT-------VALWESLRQHGETELLQAAEEKFTIEPFK--AKSLKDVEDLGKLV--QTQRTRSSSEDTA 925
Cdd:COG5238 236 KSLTTL--DLSNNqigdegvIALAEALKNNTTVETLYLSGNQIGAEGAIalAKALQGNTTLTSLDlsVNRIGDEGAIALA 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 926 GELPAVRDLKKLEFALGPISGPQAFPkLVRILTAFSSLQHLDLdalSENKIGDEGVSQLsATFPQL-KSLETLNLSQNSI 1004
Cdd:COG5238 314 EGLQGNKTLHTLNLAYNGIGAQGAIA-LAKALQENTTLHSLDL---SDNQIGDEGAIAL-AKYLEGnTTLRELNLGKNNI 388
|
250
....*....|..
gi 1622915399 1005 TDLGAYKLAEGL 1016
Cdd:COG5238 389 GKQGAEALIDAL 400
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
957-1082 |
3.54e-05 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 47.62 E-value: 3.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 957 LTAFSSLQHLDLdalSENKIGDegvsqLSATFPQLKSLETLNLSQNSITDLGAY-----KLAE-GLpslaasllrlslYN 1030
Cdd:COG4886 109 LSNLTNLESLDL---SGNQLTD-----LPEELANLTNLKELDLSNNQLTDLPEPlgnltNLKSlDL------------SN 168
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1622915399 1031 NCIcdmgaESLARVLPDMVSLRVMDVQYNKFTAagaqqLAASLRKCPHVETL 1082
Cdd:COG4886 169 NQL-----TDLPEELGNLTNLKELDLSNNQITD-----LPEPLGNLTNLEEL 210
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
957-1007 |
5.80e-05 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 46.85 E-value: 5.80e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1622915399 957 LTAFSSLQHLDLdalSENKIGDegvsqLSATFPQLKSLETLNLSQNSITDL 1007
Cdd:COG4886 201 LGNLTNLEELDL---SGNQLTD-----LPEPLANLTNLETLDLSNNQLTDL 243
|
|
| NLRC4_HD2 |
pfam17776 |
NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein ... |
690-795 |
1.13e-04 |
|
NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein and NOD2 protein.
Pssm-ID: 465499 [Multi-domain] Cd Length: 122 Bit Score: 43.05 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 690 LQCFLGALWLALSGEIKDKELPQYLaLTPRKKRPYDNWLEGVP-----------RFLTGLIFQPRARCLGALVGPSATAf 758
Cdd:pfam17776 4 FQEFFAALFYVLSFKEEKSNPLKEF-FGLRKRESLKSLLDKALksknghldlflRFLFGLLNEENQRLLEGLLGCKLSS- 81
|
90 100 110
....*....|....*....|....*....|....*..
gi 1622915399 759 adRKQKVLARYLKRLQPGTLRARQLLELLHCAHEAEE 795
Cdd:pfam17776 82 --EIKQELLQWIKSLIQKELSSERFLNLFHCLYELQD 116
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
971-1082 |
1.97e-04 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 45.17 E-value: 1.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915399 971 LSENKIGDEGVSQLS-ATFPQLKSLETLNLSQNSITDLGAYKLAEGLPSLAASLLRLSLyNNCICDMGAESLARVLPDMV 1049
Cdd:COG5238 158 LLGLAARLGLLAAISmAKALQNNSVETVYLGCNQIGDEGIEELAEALTQNTTVTTLWLK-RNPIGDEGAEILAEALKGNK 236
|
90 100 110
....*....|....*....|....*....|...
gi 1622915399 1050 SLRVMDVQYNKFTAAGAQQLAASLRKCPHVETL 1082
Cdd:COG5238 237 SLTTLDLSNNQIGDEGVIALAEALKNNTTVETL 269
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
934-1009 |
3.39e-04 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 44.54 E-value: 3.39e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622915399 934 LKKLEFALGPISG-PQAFPKLvriltafSSLQHLDLdalSENKIGDegvsqLSATFPQLKSLETLNLSQNSITDLGA 1009
Cdd:COG4886 161 LKSLDLSNNQLTDlPEELGNL-------TNLKELDL---SNNQITD-----LPEPLGNLTNLEELDLSGNQLTDLPE 222
|
|
| LRR_RI |
smart00368 |
Leucine rich repeat, ribonuclease inhibitor type; |
991-1016 |
1.02e-03 |
|
Leucine rich repeat, ribonuclease inhibitor type;
Pssm-ID: 197686 [Multi-domain] Cd Length: 28 Bit Score: 37.39 E-value: 1.02e-03
|
| LRR_RI |
smart00368 |
Leucine rich repeat, ribonuclease inhibitor type; |
1050-1074 |
1.06e-03 |
|
Leucine rich repeat, ribonuclease inhibitor type;
Pssm-ID: 197686 [Multi-domain] Cd Length: 28 Bit Score: 37.39 E-value: 1.06e-03
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
955-1007 |
7.74e-03 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 39.00 E-value: 7.74e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1622915399 955 RILTAFS-SLQHLDLdalSENKIGDegVSQLSAtfpqLKSLETLNLSQNSITDL 1007
Cdd:cd21340 113 RSLAALSnSLRVLNI---SGNNIDS--LEPLAP----LRNLEQLDASNNQISDL 157
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