cleavage and polyadenylation specificity factor subunit 4 isoform X4 [Homo sapiens]
zinc finger CCCH domain-containing protein( domain architecture ID 708395)
zinc finger CCCH domain-containing protein similar to cleavage and polyadenylation specificity factor (CPSF) subunit 4, which is part of the complex that plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition
List of domain hits
Name | Accession | Description | Interval | E-value | |||
YTH1 super family | cl25862 | Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin ... |
2-108 | 1.77e-27 | |||
Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]; The actual alignment was detected with superfamily member COG5084: Pssm-ID: 227416 [Multi-domain] Cd Length: 285 Bit Score: 105.72 E-value: 1.77e-27
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COG5222 super family | cl34947 | Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]; |
178-210 | 7.36e-03 | |||
Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]; The actual alignment was detected with superfamily member COG5222: Pssm-ID: 227547 [Multi-domain] Cd Length: 427 Bit Score: 37.03 E-value: 7.36e-03
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Name | Accession | Description | Interval | E-value | |||
YTH1 | COG5084 | Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin ... |
2-108 | 1.77e-27 | |||
Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]; Pssm-ID: 227416 [Multi-domain] Cd Length: 285 Bit Score: 105.72 E-value: 1.77e-27
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ZnF_C3H1 | smart00356 | zinc finger; |
10-35 | 1.38e-04 | |||
zinc finger; Pssm-ID: 214632 [Multi-domain] Cd Length: 27 Bit Score: 37.99 E-value: 1.38e-04
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zf_CCCH_4 | pfam18345 | Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch ... |
15-33 | 2.12e-03 | |||
Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch domain-containing proteins such as ZIP. Functional studies indicate that ZIP specifically targets EGFR and represses its transcription, and that the zinc finger and the coiled-coil domains are central to that process. Pssm-ID: 465719 [Multi-domain] Cd Length: 19 Bit Score: 34.31 E-value: 2.12e-03
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COG5222 | COG5222 | Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]; |
178-210 | 7.36e-03 | |||
Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]; Pssm-ID: 227547 [Multi-domain] Cd Length: 427 Bit Score: 37.03 E-value: 7.36e-03
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Name | Accession | Description | Interval | E-value | |||
YTH1 | COG5084 | Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin ... |
2-108 | 1.77e-27 | |||
Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]; Pssm-ID: 227416 [Multi-domain] Cd Length: 285 Bit Score: 105.72 E-value: 1.77e-27
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ZnF_C3H1 | smart00356 | zinc finger; |
10-35 | 1.38e-04 | |||
zinc finger; Pssm-ID: 214632 [Multi-domain] Cd Length: 27 Bit Score: 37.99 E-value: 1.38e-04
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zf_CCCH_4 | pfam18345 | Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch ... |
15-33 | 2.12e-03 | |||
Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch domain-containing proteins such as ZIP. Functional studies indicate that ZIP specifically targets EGFR and represses its transcription, and that the zinc finger and the coiled-coil domains are central to that process. Pssm-ID: 465719 [Multi-domain] Cd Length: 19 Bit Score: 34.31 E-value: 2.12e-03
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COG5222 | COG5222 | Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]; |
178-210 | 7.36e-03 | |||
Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]; Pssm-ID: 227547 [Multi-domain] Cd Length: 427 Bit Score: 37.03 E-value: 7.36e-03
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Blast search parameters | ||||
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