NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1039790429|ref|XP_017168414|]
View 

thymidine kinase 2, mitochondrial isoform X2 [Mus musculus]

Protein Classification

nucleoside/nucleotide kinase family protein( domain architecture ID 106737)

nucleoside/nucleotide kinase family protein may catalyze the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
NK super family cl17190
Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of ...
30-192 1.86e-56

Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.


The actual alignment was detected with superfamily member pfam01712:

Pssm-ID: 450170  Cd Length: 201  Bit Score: 177.12  E-value: 1.86e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039790429  30 MYHDASRWGLTLQTYVQLTMLDQHTRP-QMSPVRLMERSIYSARYIFVENLYRSGKMPEVDYAILSEWFDWIVRNIDvSV 108
Cdd:pfam01712  42 FYKDPSRWSFALQTYFLNSRFKQQLEAfFTGQVVILERSIYSDRYIFAKMLYDKGTMSDEEYKTYKDLYDNMLLEFP-KP 120
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039790429 109 DLIVYLRTTPEICYQRLKMRCREEEKVIPMEYLHAIHRLYEEWLVNGSLFpaaaPVLVIEADhnlEKMLELFEQNRARIL 188
Cdd:pfam01712 121 DLIIYLKTSPETCLERIKKRGRTEEQNISLDYLERLHEKYEAWLKKLNLS----PVLVIDGD---ELDFVFFEEDREDVM 193

                  ....
gi 1039790429 189 TPEN 192
Cdd:pfam01712 194 NEVN 197
 
Name Accession Description Interval E-value
dNK pfam01712
Deoxynucleoside kinase; This family consists of various deoxynucleoside kinases cytidine EC:2. ...
30-192 1.86e-56

Deoxynucleoside kinase; This family consists of various deoxynucleoside kinases cytidine EC:2.7.1.74, guanosine EC:2.7.1.113, adenosine EC:2.7.1.76 and thymidine kinase EC:2.7.1.21 (which also phosphorylates deoxyuridine and deoxycytosine.) These enzymes catalyze the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside. Using ATP and yielding ADP in the process.


Pssm-ID: 396326  Cd Length: 201  Bit Score: 177.12  E-value: 1.86e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039790429  30 MYHDASRWGLTLQTYVQLTMLDQHTRP-QMSPVRLMERSIYSARYIFVENLYRSGKMPEVDYAILSEWFDWIVRNIDvSV 108
Cdd:pfam01712  42 FYKDPSRWSFALQTYFLNSRFKQQLEAfFTGQVVILERSIYSDRYIFAKMLYDKGTMSDEEYKTYKDLYDNMLLEFP-KP 120
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039790429 109 DLIVYLRTTPEICYQRLKMRCREEEKVIPMEYLHAIHRLYEEWLVNGSLFpaaaPVLVIEADhnlEKMLELFEQNRARIL 188
Cdd:pfam01712 121 DLIIYLKTSPETCLERIKKRGRTEEQNISLDYLERLHEKYEAWLKKLNLS----PVLVIDGD---ELDFVFFEEDREDVM 193

                  ....
gi 1039790429 189 TPEN 192
Cdd:pfam01712 194 NEVN 197
dNK cd01673
Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to ...
30-171 3.47e-47

Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.


Pssm-ID: 238836  Cd Length: 193  Bit Score: 153.15  E-value: 3.47e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039790429  30 MYHDASRWGLTLQTYVQLTMLDQHTRPQM----SPVRLMERSIYSARYIFVENLYRSGKMPeVDYAILSEWFDWIVRNiD 105
Cdd:cd01673    45 FYEDPKRWAFPFQLYFLLSRLKQYKDALEhlstGQGVILERSIFSDRVFAEANLKEGGIMK-TEYDLYNELFDNLIPE-L 122
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039790429 106 VSVDLIVYLRTTPEICYQRLKMRCREEEKVIPMEYLHAIHRLYEEWLVNGSLFpaAAPVLVIEADH 171
Cdd:cd01673   123 LPPDLVIYLDASPETCLKRIKKRGRPEEQGIPLDYLEDLHEAYEKWFLPQMYE--KAPVLIIDANE 186
Dck COG1428
Deoxyadenosine/deoxycytidine kinase [Nucleotide transport and metabolism];
31-182 3.14e-29

Deoxyadenosine/deoxycytidine kinase [Nucleotide transport and metabolism];


Pssm-ID: 441037 [Multi-domain]  Cd Length: 205  Bit Score: 107.18  E-value: 3.14e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039790429  31 YHDASRWGLTLQTYVQLTMLDQHTR-PQMSPVRLMERSIYSARyIFVENLYRSGKMPEVDYAILSEWFDWIVRNIdVSVD 109
Cdd:COG1428    46 YEDPKRWAFPLQLFFLLSRFKQLKDlRQFGGNVVSDRSIYKDA-IFAKLLHEMGTLSDREFDLYRQLFDNLTEDL-PKPD 123
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039790429 110 LIVYLRTTPEICYQRLKMRCREEEKVIPMEYLHAIHRLYEEWLVNgslFPaAAPVLVIEAD-----HNLEKMLELFEQ 182
Cdd:COG1428   124 LVIYLQASVDTLLERIKKRGRDYEQNIDLDYLERLNEAYEEWFEH---YD-ASPVLIIDTDeldfvNNPEDLELLLEQ 197
 
Name Accession Description Interval E-value
dNK pfam01712
Deoxynucleoside kinase; This family consists of various deoxynucleoside kinases cytidine EC:2. ...
30-192 1.86e-56

Deoxynucleoside kinase; This family consists of various deoxynucleoside kinases cytidine EC:2.7.1.74, guanosine EC:2.7.1.113, adenosine EC:2.7.1.76 and thymidine kinase EC:2.7.1.21 (which also phosphorylates deoxyuridine and deoxycytosine.) These enzymes catalyze the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside. Using ATP and yielding ADP in the process.


Pssm-ID: 396326  Cd Length: 201  Bit Score: 177.12  E-value: 1.86e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039790429  30 MYHDASRWGLTLQTYVQLTMLDQHTRP-QMSPVRLMERSIYSARYIFVENLYRSGKMPEVDYAILSEWFDWIVRNIDvSV 108
Cdd:pfam01712  42 FYKDPSRWSFALQTYFLNSRFKQQLEAfFTGQVVILERSIYSDRYIFAKMLYDKGTMSDEEYKTYKDLYDNMLLEFP-KP 120
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039790429 109 DLIVYLRTTPEICYQRLKMRCREEEKVIPMEYLHAIHRLYEEWLVNGSLFpaaaPVLVIEADhnlEKMLELFEQNRARIL 188
Cdd:pfam01712 121 DLIIYLKTSPETCLERIKKRGRTEEQNISLDYLERLHEKYEAWLKKLNLS----PVLVIDGD---ELDFVFFEEDREDVM 193

                  ....
gi 1039790429 189 TPEN 192
Cdd:pfam01712 194 NEVN 197
dNK cd01673
Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to ...
30-171 3.47e-47

Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.


Pssm-ID: 238836  Cd Length: 193  Bit Score: 153.15  E-value: 3.47e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039790429  30 MYHDASRWGLTLQTYVQLTMLDQHTRPQM----SPVRLMERSIYSARYIFVENLYRSGKMPeVDYAILSEWFDWIVRNiD 105
Cdd:cd01673    45 FYEDPKRWAFPFQLYFLLSRLKQYKDALEhlstGQGVILERSIFSDRVFAEANLKEGGIMK-TEYDLYNELFDNLIPE-L 122
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039790429 106 VSVDLIVYLRTTPEICYQRLKMRCREEEKVIPMEYLHAIHRLYEEWLVNGSLFpaAAPVLVIEADH 171
Cdd:cd01673   123 LPPDLVIYLDASPETCLKRIKKRGRPEEQGIPLDYLEDLHEAYEKWFLPQMYE--KAPVLIIDANE 186
Dck COG1428
Deoxyadenosine/deoxycytidine kinase [Nucleotide transport and metabolism];
31-182 3.14e-29

Deoxyadenosine/deoxycytidine kinase [Nucleotide transport and metabolism];


Pssm-ID: 441037 [Multi-domain]  Cd Length: 205  Bit Score: 107.18  E-value: 3.14e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039790429  31 YHDASRWGLTLQTYVQLTMLDQHTR-PQMSPVRLMERSIYSARyIFVENLYRSGKMPEVDYAILSEWFDWIVRNIdVSVD 109
Cdd:COG1428    46 YEDPKRWAFPLQLFFLLSRFKQLKDlRQFGGNVVSDRSIYKDA-IFAKLLHEMGTLSDREFDLYRQLFDNLTEDL-PKPD 123
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039790429 110 LIVYLRTTPEICYQRLKMRCREEEKVIPMEYLHAIHRLYEEWLVNgslFPaAAPVLVIEAD-----HNLEKMLELFEQ 182
Cdd:COG1428   124 LVIYLQASVDTLLERIKKRGRDYEQNIDLDYLERLNEAYEEWFEH---YD-ASPVLIIDTDeldfvNNPEDLELLLEQ 197
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH