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Conserved domains on  [gi|1039792230|ref|XP_017168665|]
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microtubule-associated protein 4 isoform X24 [Mus musculus]

Protein Classification

PHA03247 and Tubulin-binding domain-containing protein( domain architecture ID 10450448)

PHA03247 and Tubulin-binding domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Tubulin-binding pfam00418
Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, ...
843-872 1.85e-13

Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, MAP4 and Tau, as well as other animal homologs. MAP4 is present in many tissues but is usually absent from neurons; MAP2 and Tau are mainly neuronal. Members of this family have the ability to bind to and stabilize microtubules. As a result, they are involved in neuronal migration, supporting dendrite elongation, and regulating microtubules during mitotic metaphase. Note that Tau is involved in neurofibrillary tangle formation in Alzheimer's disease and some other dementias. This family features a C-terminal microtubule binding repeat that contains a conserved KXGS motif.


:

Pssm-ID: 425670 [Multi-domain]  Cd Length: 30  Bit Score: 64.72  E-value: 1.85e-13
                          10        20        30
                  ....*....|....*....|....*....|
gi 1039792230 843 VQIQNKKVDISKVSSKCGSKANIKHKPGGG 872
Cdd:pfam00418   1 VKIESKKLDFSKVQSKCGSKDNIKHKPGGG 30
Tubulin-binding pfam00418
Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, ...
812-841 1.85e-13

Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, MAP4 and Tau, as well as other animal homologs. MAP4 is present in many tissues but is usually absent from neurons; MAP2 and Tau are mainly neuronal. Members of this family have the ability to bind to and stabilize microtubules. As a result, they are involved in neuronal migration, supporting dendrite elongation, and regulating microtubules during mitotic metaphase. Note that Tau is involved in neurofibrillary tangle formation in Alzheimer's disease and some other dementias. This family features a C-terminal microtubule binding repeat that contains a conserved KXGS motif.


:

Pssm-ID: 425670 [Multi-domain]  Cd Length: 30  Bit Score: 64.72  E-value: 1.85e-13
                          10        20        30
                  ....*....|....*....|....*....|
gi 1039792230 812 VQIVSKKVSYSHIQSKCGSKDNIKHVPGGG 841
Cdd:pfam00418   1 VKIESKKLDFSKVQSKCGSKDNIKHKPGGG 30
PHA03247 super family cl33720
large tegument protein UL36; Provisional
516-750 3.30e-09

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 61.11  E-value: 3.30e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230  516 EKKAKPLATTQPAKTSTSKAKTQPTSLPKQPAPTTSGGLNKKPMSLASGSVPAAPHKRPAAATATARPSTLPARDVKPKP 595
Cdd:PHA03247  2709 EPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAV 2788
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230  596 ITEAKVAEKRTSPSKPSSAPALKPGPktTPTVSKATSPSTLVSTGPSSR--SPATTLPKRPTSIKTEGKPA---DVKRM- 669
Cdd:PHA03247  2789 ASLSESRESLPSPWDPADPPAAVLAP--AAALPPAASPAGPLPPPTSAQptAPPPPPGPPPPSLPLGGSVApggDVRRRp 2866
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230  670 -----TAKSASADLSRSKTTSASSVKRNTTPTgAAPPAGMTSTRVKPMSAPSRSSGALSVDKKPTSTKPSSSAPRVSRLA 744
Cdd:PHA03247  2867 psrspAAKPAAPARPPVRRLARPAVSRSTESF-ALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAP 2945

                   ....*.
gi 1039792230  745 TTVSAP 750
Cdd:PHA03247  2946 TTDPAG 2951
Tubulin-binding pfam00418
Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, ...
874-904 3.70e-09

Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, MAP4 and Tau, as well as other animal homologs. MAP4 is present in many tissues but is usually absent from neurons; MAP2 and Tau are mainly neuronal. Members of this family have the ability to bind to and stabilize microtubules. As a result, they are involved in neuronal migration, supporting dendrite elongation, and regulating microtubules during mitotic metaphase. Note that Tau is involved in neurofibrillary tangle formation in Alzheimer's disease and some other dementias. This family features a C-terminal microtubule binding repeat that contains a conserved KXGS motif.


:

Pssm-ID: 425670 [Multi-domain]  Cd Length: 30  Bit Score: 52.78  E-value: 3.70e-09
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1039792230 874 VKIESQKLNFKeKAQAKVGSLDNVGHLPAGG 904
Cdd:pfam00418   1 VKIESKKLDFS-KVQSKCGSKDNIKHKPGGG 30
Tubulin-binding pfam00418
Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, ...
751-772 1.66e-07

Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, MAP4 and Tau, as well as other animal homologs. MAP4 is present in many tissues but is usually absent from neurons; MAP2 and Tau are mainly neuronal. Members of this family have the ability to bind to and stabilize microtubules. As a result, they are involved in neuronal migration, supporting dendrite elongation, and regulating microtubules during mitotic metaphase. Note that Tau is involved in neurofibrillary tangle formation in Alzheimer's disease and some other dementias. This family features a C-terminal microtubule binding repeat that contains a conserved KXGS motif.


:

Pssm-ID: 425670 [Multi-domain]  Cd Length: 30  Bit Score: 47.78  E-value: 1.66e-07
                          10        20
                  ....*....|....*....|..
gi 1039792230 751 DLKSVRSKVGSTENIKHQPGGG 772
Cdd:pfam00418   9 DFSKVQSKCGSKDNIKHKPGGG 30
 
Name Accession Description Interval E-value
Tubulin-binding pfam00418
Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, ...
843-872 1.85e-13

Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, MAP4 and Tau, as well as other animal homologs. MAP4 is present in many tissues but is usually absent from neurons; MAP2 and Tau are mainly neuronal. Members of this family have the ability to bind to and stabilize microtubules. As a result, they are involved in neuronal migration, supporting dendrite elongation, and regulating microtubules during mitotic metaphase. Note that Tau is involved in neurofibrillary tangle formation in Alzheimer's disease and some other dementias. This family features a C-terminal microtubule binding repeat that contains a conserved KXGS motif.


Pssm-ID: 425670 [Multi-domain]  Cd Length: 30  Bit Score: 64.72  E-value: 1.85e-13
                          10        20        30
                  ....*....|....*....|....*....|
gi 1039792230 843 VQIQNKKVDISKVSSKCGSKANIKHKPGGG 872
Cdd:pfam00418   1 VKIESKKLDFSKVQSKCGSKDNIKHKPGGG 30
Tubulin-binding pfam00418
Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, ...
812-841 1.85e-13

Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, MAP4 and Tau, as well as other animal homologs. MAP4 is present in many tissues but is usually absent from neurons; MAP2 and Tau are mainly neuronal. Members of this family have the ability to bind to and stabilize microtubules. As a result, they are involved in neuronal migration, supporting dendrite elongation, and regulating microtubules during mitotic metaphase. Note that Tau is involved in neurofibrillary tangle formation in Alzheimer's disease and some other dementias. This family features a C-terminal microtubule binding repeat that contains a conserved KXGS motif.


Pssm-ID: 425670 [Multi-domain]  Cd Length: 30  Bit Score: 64.72  E-value: 1.85e-13
                          10        20        30
                  ....*....|....*....|....*....|
gi 1039792230 812 VQIVSKKVSYSHIQSKCGSKDNIKHVPGGG 841
Cdd:pfam00418   1 VKIESKKLDFSKVQSKCGSKDNIKHKPGGG 30
PHA03247 PHA03247
large tegument protein UL36; Provisional
516-750 3.30e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 61.11  E-value: 3.30e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230  516 EKKAKPLATTQPAKTSTSKAKTQPTSLPKQPAPTTSGGLNKKPMSLASGSVPAAPHKRPAAATATARPSTLPARDVKPKP 595
Cdd:PHA03247  2709 EPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAV 2788
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230  596 ITEAKVAEKRTSPSKPSSAPALKPGPktTPTVSKATSPSTLVSTGPSSR--SPATTLPKRPTSIKTEGKPA---DVKRM- 669
Cdd:PHA03247  2789 ASLSESRESLPSPWDPADPPAAVLAP--AAALPPAASPAGPLPPPTSAQptAPPPPPGPPPPSLPLGGSVApggDVRRRp 2866
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230  670 -----TAKSASADLSRSKTTSASSVKRNTTPTgAAPPAGMTSTRVKPMSAPSRSSGALSVDKKPTSTKPSSSAPRVSRLA 744
Cdd:PHA03247  2867 psrspAAKPAAPARPPVRRLARPAVSRSTESF-ALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAP 2945

                   ....*.
gi 1039792230  745 TTVSAP 750
Cdd:PHA03247  2946 TTDPAG 2951
Tubulin-binding pfam00418
Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, ...
874-904 3.70e-09

Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, MAP4 and Tau, as well as other animal homologs. MAP4 is present in many tissues but is usually absent from neurons; MAP2 and Tau are mainly neuronal. Members of this family have the ability to bind to and stabilize microtubules. As a result, they are involved in neuronal migration, supporting dendrite elongation, and regulating microtubules during mitotic metaphase. Note that Tau is involved in neurofibrillary tangle formation in Alzheimer's disease and some other dementias. This family features a C-terminal microtubule binding repeat that contains a conserved KXGS motif.


Pssm-ID: 425670 [Multi-domain]  Cd Length: 30  Bit Score: 52.78  E-value: 3.70e-09
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1039792230 874 VKIESQKLNFKeKAQAKVGSLDNVGHLPAGG 904
Cdd:pfam00418   1 VKIESKKLDFS-KVQSKCGSKDNIKHKPGGG 30
Tubulin-binding pfam00418
Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, ...
751-772 1.66e-07

Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, MAP4 and Tau, as well as other animal homologs. MAP4 is present in many tissues but is usually absent from neurons; MAP2 and Tau are mainly neuronal. Members of this family have the ability to bind to and stabilize microtubules. As a result, they are involved in neuronal migration, supporting dendrite elongation, and regulating microtubules during mitotic metaphase. Note that Tau is involved in neurofibrillary tangle formation in Alzheimer's disease and some other dementias. This family features a C-terminal microtubule binding repeat that contains a conserved KXGS motif.


Pssm-ID: 425670 [Multi-domain]  Cd Length: 30  Bit Score: 47.78  E-value: 1.66e-07
                          10        20
                  ....*....|....*....|..
gi 1039792230 751 DLKSVRSKVGSTENIKHQPGGG 772
Cdd:pfam00418   9 DFSKVQSKCGSKDNIKHKPGGG 30
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
522-807 7.70e-07

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 53.00  E-value: 7.70e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 522 LATTQPAKTSTSKAKTQPTSLPKQPAPTtsgglnkkpmslASGSVPAAPHKRPAAATATARPSTLPARDVKPKP-ITEAK 600
Cdd:pfam05109 527 VTTPTPNATSPTLGKTSPTSAVTTPTPN------------ATSPTPAVTTPTPNATIPTLGKTSPTSAVTTPTPnATSPT 594
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 601 VAEkrTSPSKPSSAPALKpGPKTTPTV-SKATSPSTLVSTGPS--SRSPATTLPKRPTSIKTEGKPAD-------VKRMT 670
Cdd:pfam05109 595 VGE--TSPQANTTNHTLG-GTSSTPVVtSPPKNATSAVTTGQHniTSSSTSSMSLRPSSISETLSPSTsdnstshMPLLT 671
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 671 AKSASADLSRSKTTSASSVKRNTTPTGAAPPAGMTSTRVKP-MSAPSRSSGALSVDK-KPTSTKPSSSAPRVSRLATtvs 748
Cdd:pfam05109 672 SAHPTGGENITQVTPASTSTHHVSTSSPAPRPGTTSQASGPgNSSTSTKPGEVNVTKgTPPKNATSPQAPSGQKTAV--- 748
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039792230 749 aPDLKSVRSKVGSTENIKHQPG-GGRAKVEKKTEAATTAGKPEP--NAVTKAAGSIASAQKP 807
Cdd:pfam05109 749 -PTVTSTGGKANSTTGGKHTTGhGARTSTEPTTDYGGDSTTPRTryNATTYLPPSTSSKLRP 809
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
678-754 8.81e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 39.49  E-value: 8.81e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039792230 678 LSRSKTTSASSVKRNTTPTGAAPPAgmTSTRVKPMSAPSRSSGALSVDKKPTSTKPSSSAPRVSRLATTVSAPDLKS 754
Cdd:TIGR00601  74 VSKPKTGTGKVAPPAATPTSAPTPT--PSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSSGSDAAS 148
 
Name Accession Description Interval E-value
Tubulin-binding pfam00418
Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, ...
843-872 1.85e-13

Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, MAP4 and Tau, as well as other animal homologs. MAP4 is present in many tissues but is usually absent from neurons; MAP2 and Tau are mainly neuronal. Members of this family have the ability to bind to and stabilize microtubules. As a result, they are involved in neuronal migration, supporting dendrite elongation, and regulating microtubules during mitotic metaphase. Note that Tau is involved in neurofibrillary tangle formation in Alzheimer's disease and some other dementias. This family features a C-terminal microtubule binding repeat that contains a conserved KXGS motif.


Pssm-ID: 425670 [Multi-domain]  Cd Length: 30  Bit Score: 64.72  E-value: 1.85e-13
                          10        20        30
                  ....*....|....*....|....*....|
gi 1039792230 843 VQIQNKKVDISKVSSKCGSKANIKHKPGGG 872
Cdd:pfam00418   1 VKIESKKLDFSKVQSKCGSKDNIKHKPGGG 30
Tubulin-binding pfam00418
Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, ...
812-841 1.85e-13

Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, MAP4 and Tau, as well as other animal homologs. MAP4 is present in many tissues but is usually absent from neurons; MAP2 and Tau are mainly neuronal. Members of this family have the ability to bind to and stabilize microtubules. As a result, they are involved in neuronal migration, supporting dendrite elongation, and regulating microtubules during mitotic metaphase. Note that Tau is involved in neurofibrillary tangle formation in Alzheimer's disease and some other dementias. This family features a C-terminal microtubule binding repeat that contains a conserved KXGS motif.


Pssm-ID: 425670 [Multi-domain]  Cd Length: 30  Bit Score: 64.72  E-value: 1.85e-13
                          10        20        30
                  ....*....|....*....|....*....|
gi 1039792230 812 VQIVSKKVSYSHIQSKCGSKDNIKHVPGGG 841
Cdd:pfam00418   1 VKIESKKLDFSKVQSKCGSKDNIKHKPGGG 30
PHA03247 PHA03247
large tegument protein UL36; Provisional
516-750 3.30e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 61.11  E-value: 3.30e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230  516 EKKAKPLATTQPAKTSTSKAKTQPTSLPKQPAPTTSGGLNKKPMSLASGSVPAAPHKRPAAATATARPSTLPARDVKPKP 595
Cdd:PHA03247  2709 EPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAV 2788
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230  596 ITEAKVAEKRTSPSKPSSAPALKPGPktTPTVSKATSPSTLVSTGPSSR--SPATTLPKRPTSIKTEGKPA---DVKRM- 669
Cdd:PHA03247  2789 ASLSESRESLPSPWDPADPPAAVLAP--AAALPPAASPAGPLPPPTSAQptAPPPPPGPPPPSLPLGGSVApggDVRRRp 2866
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230  670 -----TAKSASADLSRSKTTSASSVKRNTTPTgAAPPAGMTSTRVKPMSAPSRSSGALSVDKKPTSTKPSSSAPRVSRLA 744
Cdd:PHA03247  2867 psrspAAKPAAPARPPVRRLARPAVSRSTESF-ALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAP 2945

                   ....*.
gi 1039792230  745 TTVSAP 750
Cdd:PHA03247  2946 TTDPAG 2951
Tubulin-binding pfam00418
Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, ...
874-904 3.70e-09

Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, MAP4 and Tau, as well as other animal homologs. MAP4 is present in many tissues but is usually absent from neurons; MAP2 and Tau are mainly neuronal. Members of this family have the ability to bind to and stabilize microtubules. As a result, they are involved in neuronal migration, supporting dendrite elongation, and regulating microtubules during mitotic metaphase. Note that Tau is involved in neurofibrillary tangle formation in Alzheimer's disease and some other dementias. This family features a C-terminal microtubule binding repeat that contains a conserved KXGS motif.


Pssm-ID: 425670 [Multi-domain]  Cd Length: 30  Bit Score: 52.78  E-value: 3.70e-09
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1039792230 874 VKIESQKLNFKeKAQAKVGSLDNVGHLPAGG 904
Cdd:pfam00418   1 VKIESKKLDFS-KVQSKCGSKDNIKHKPGGG 30
Tubulin-binding pfam00418
Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, ...
751-772 1.66e-07

Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, MAP4 and Tau, as well as other animal homologs. MAP4 is present in many tissues but is usually absent from neurons; MAP2 and Tau are mainly neuronal. Members of this family have the ability to bind to and stabilize microtubules. As a result, they are involved in neuronal migration, supporting dendrite elongation, and regulating microtubules during mitotic metaphase. Note that Tau is involved in neurofibrillary tangle formation in Alzheimer's disease and some other dementias. This family features a C-terminal microtubule binding repeat that contains a conserved KXGS motif.


Pssm-ID: 425670 [Multi-domain]  Cd Length: 30  Bit Score: 47.78  E-value: 1.66e-07
                          10        20
                  ....*....|....*....|..
gi 1039792230 751 DLKSVRSKVGSTENIKHQPGGG 772
Cdd:pfam00418   9 DFSKVQSKCGSKDNIKHKPGGG 30
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
486-809 6.45e-07

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 53.64  E-value: 6.45e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230  486 VSRQEEAKAAVGVTGNDITTPPNKEPPPSPEKKAKPLATTQPAKTSTSKAKTQPTSLPKQPAPTTSGGlnKKPMSLASGS 565
Cdd:PHA03307    44 VSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGP--SSPDPPPPTP 121
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230  566 VPAAP---HKRPAAATATARPSTLPARDVKPKPITEAKVAEKRTSPSKPSSAPALKPGPKTTPTVSKAtSPSTLVSTGPS 642
Cdd:PHA03307   122 PPASPppsPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSP-PAEPPPSTPPA 200
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230  643 SRSPATTLPKRPTSIKTEGKPADVKRMTAKSASADLSRSKTTSASSVK---RNTTPTGAAPPAGMTSTRVKPMSAPSRSS 719
Cdd:PHA03307   201 AASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGwgpENECPLPRPAPITLPTRIWEASGWNGPSS 280
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230  720 GALSVdKKPTSTKPSSSAPRVSRLATTVSAPDLKSVRSKVGSTENikhQPGGGRAKVEKKTEAATTAGKPEPNAVTKAAG 799
Cdd:PHA03307   281 RPGPA-SSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRES---SSSSTSSSSESSRGAAVSPGPSPSRSPSPSRP 356
                          330
                   ....*....|
gi 1039792230  800 SIASAQKPPA 809
Cdd:PHA03307   357 PPPADPSSPR 366
PHA03247 PHA03247
large tegument protein UL36; Provisional
517-749 7.10e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.40  E-value: 7.10e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230  517 KKAKPLATTQPAKTSTSKAKTQ--PTSLPKQPAPTTSGGLNKKPMSLAS-GSVPAAPHKRPAAATATARPSTLPARDVKP 593
Cdd:PHA03247  2585 RARRPDAPPQSARPRAPVDDRGdpRGPAPPSPLPPDTHAPDPPPPSPSPaANEPDPHPPPTVPPPERPRDDPAPGRVSRP 2664
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230  594 KPITEAKVAEKRTSPSKPSSAPALKPGPKTTPTVSKATSPSTLVSTGPSSRSPATTLPKRPTSIKTEGKPADVKRMTAKS 673
Cdd:PHA03247  2665 RRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAV 2744
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039792230  674 ASADLSRSKTTSASSVKRNTTPTGAAPPAGMTSTRVKPMSAPSRSSGALSVDKKPTSTKPSSSAPRVSRLATTVSA 749
Cdd:PHA03247  2745 PAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPP 2820
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
522-807 7.70e-07

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 53.00  E-value: 7.70e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 522 LATTQPAKTSTSKAKTQPTSLPKQPAPTtsgglnkkpmslASGSVPAAPHKRPAAATATARPSTLPARDVKPKP-ITEAK 600
Cdd:pfam05109 527 VTTPTPNATSPTLGKTSPTSAVTTPTPN------------ATSPTPAVTTPTPNATIPTLGKTSPTSAVTTPTPnATSPT 594
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 601 VAEkrTSPSKPSSAPALKpGPKTTPTV-SKATSPSTLVSTGPS--SRSPATTLPKRPTSIKTEGKPAD-------VKRMT 670
Cdd:pfam05109 595 VGE--TSPQANTTNHTLG-GTSSTPVVtSPPKNATSAVTTGQHniTSSSTSSMSLRPSSISETLSPSTsdnstshMPLLT 671
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 671 AKSASADLSRSKTTSASSVKRNTTPTGAAPPAGMTSTRVKP-MSAPSRSSGALSVDK-KPTSTKPSSSAPRVSRLATtvs 748
Cdd:pfam05109 672 SAHPTGGENITQVTPASTSTHHVSTSSPAPRPGTTSQASGPgNSSTSTKPGEVNVTKgTPPKNATSPQAPSGQKTAV--- 748
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039792230 749 aPDLKSVRSKVGSTENIKHQPG-GGRAKVEKKTEAATTAGKPEP--NAVTKAAGSIASAQKP 807
Cdd:pfam05109 749 -PTVTSTGGKANSTTGGKHTTGhGARTSTEPTTDYGGDSTTPRTryNATTYLPPSTSSKLRP 809
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
584-962 8.53e-07

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 53.00  E-value: 8.53e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 584 STLPARDVKPKPITEAKVAEKRTSPSKPSSA--PALKPGPKTT-PTVSKATSPSTLVSTGPSSRSPATTLPKrPTSIKTE 660
Cdd:pfam05109 422 SKAPESTTTSPTLNTTGFAAPNTTTGLPSSThvPTNLTAPASTgPTVSTADVTSPTPAGTTSGASPVTPSPS-PRDNGTE 500
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 661 GKPADvkrMTAKSASADLSRSKTTSASSVKRNTTPTGAAPPAGMTStrvkPMSA-PSRSSGALSVDKKPTSTKPSSSAPR 739
Cdd:pfam05109 501 SKAPD---MTSPTSAVTTPTPNATSPTPAVTTPTPNATSPTLGKTS----PTSAvTTPTPNATSPTPAVTTPTPNATIPT 573
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 740 VSRLATT--VSAPDLKSVRSKVGSTE---NIKHQPGGGRAKvekkTEAATTAGKPEPNAVTKAAGSIASAQKPpagkvQI 814
Cdd:pfam05109 574 LGKTSPTsaVTTPTPNATSPTVGETSpqaNTTNHTLGGTSS----TPVVTSPPKNATSAVTTGQHNITSSSTS-----SM 644
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 815 VSKKVSYSHIQSKCGSKDNIKHVP--------GGGNVQiqnkKVDISKVSSKCGSKANIKHKPGggdvkiesqklnfkEK 886
Cdd:pfam05109 645 SLRPSSISETLSPSTSDNSTSHMPlltsahptGGENIT----QVTPASTSTHHVSTSSPAPRPG--------------TT 706
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039792230 887 AQAKvGSLDNVGHLPAGGAVKTEGGGSEALPCPGPPAGEEPVIPEAAPDAGAPTSASGlSGHTTLSGGGDQREPQT 962
Cdd:pfam05109 707 SQAS-GPGNSSTSTKPGEVNVTKGTPPKNATSPQAPSGQKTAVPTVTSTGGKANSTTG-GKHTTGHGARTSTEPTT 780
PHA03247 PHA03247
large tegument protein UL36; Provisional
527-809 2.43e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 2.43e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230  527 PAKTSTSKAKTQPTSLPKQPAPTTSGGLNKKPMSLASGSVPAAPhkrPAAATATARPSTLPARDVKPKPITEAKVAEKRT 606
Cdd:PHA03247  2561 PAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDD---RGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANE 2637
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230  607 SPSKPSSAPALKPGPKTTPTVSKATSPSTLVSTGPSSRSPATTL-PKRPTSIKTEGKPADVKRMTAKSASADLSRSKTTS 685
Cdd:PHA03247  2638 PDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQrPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVS 2717
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230  686 ASSVKRNTTPT-GAAPPAGMTSTRVKPMSAPSRSSGALSVDKKPTSTKPSSSAPRVSRLATTVSAPDLKSVRSKVGSTEN 764
Cdd:PHA03247  2718 ATPLPPGPAAArQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRES 2797
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*..
gi 1039792230  765 I--KHQPGGGRAKVEKKTEAATTAGKPEPNAVTKAAGSIASAQKPPA 809
Cdd:PHA03247  2798 LpsPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPG 2844
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
519-812 1.70e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 49.01  E-value: 1.70e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230  519 AKPLATTQPAKTSTSKAKTQPTSLPKQPAPTTSGGLNKKPMSLASGSVPAAPHKRPAAATATARPSTLPARDVKPKPITE 598
Cdd:PHA03307   173 ALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPE 252
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230  599 AKVAEKRTSPSKPSSAPALKPGPKTTPTVSKATSPSTlvstGPSSRSPATtlpkrptsikTEGKPADVKRMTAKSASADL 678
Cdd:PHA03307   253 NECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSS----SPRERSPSP----------SPSSPGSGPAPSSPRASSSS 318
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230  679 SRSKTTSASSvkrnTTPTGAAPPAGMTSTRVKPMSAPSRSSGALSVDKKPTSTKPSSSAPRVSRlATTVSAPDLKSVRSK 758
Cdd:PHA03307   319 SSSRESSSSS----TSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSP-AASAGRPTRRRARAA 393
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1039792230  759 VGSTENIKHQPG---GGRAKVEKKTEAATTAGKPEPNAVTKAAGSI-ASAQKPPAGKV 812
Cdd:PHA03307   394 VAGRARRRDATGrfpAGRPRPSPLDAGAASGAFYARYPLLTPSGEPwPGSPPPPPGRV 451
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
545-809 8.77e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 46.38  E-value: 8.77e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 545 QPAPTTSGGLNKKPMSLASGSVPAaPHKRPAAATATARPSTLPARDVKP--KPITEAKVAEKRTSPSKPSSAPAlkPGPK 622
Cdd:PRK07003  359 EPAVTGGGAPGGGVPARVAGAVPA-PGARAAAAVGASAVPAVTAVTGAAgaALAPKAAAAAAATRAEAPPAAPA--PPAT 435
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 623 TTPTVSKATSPSTLVSTGPSSRSPATTLPKRPTSIKTEGKPADVKRMTAKSASADLSRSKTTSASSVKRNTTPTGAAPPA 702
Cdd:PRK07003  436 ADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAA 515
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 703 GMTSTRVKPMSAPSrssgalsvdkkPTSTKPSSSAPRVSRLATTVSAP--DLKSVRSKVGSTeniKHQPGGGRAKVEKKT 780
Cdd:PRK07003  516 ASREDAPAAAAPPA-----------PEARPPTPAAAAPAARAGGAAAAldVLRNAGMRVSSD---RGARAAAAAKPAAAP 581
                         250       260
                  ....*....|....*....|....*....
gi 1039792230 781 EAATTAGKPEPNAVTKAAGSIASAQKPPA 809
Cdd:PRK07003  582 AAAPKPAAPRVAVQVPTPRARAATGDAPP 610
PHA03247 PHA03247
large tegument protein UL36; Provisional
474-758 1.47e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.08  E-value: 1.47e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230  474 PSLLLEETPRDGVSRQEEAKAAVGVTGNDITTPPNKEPPPSPEKKAKPLATTQPAKTSTSKAKTQPTSLPKQPAPTTSGG 553
Cdd:PHA03247  2580 PAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPG 2659
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230  554 ---LNKKPMSLASGSVPAAPHKRPAAATATARPSTL------PARDVKPKPITEAKVAEKRTSPSKPSSAPALKPGPKTT 624
Cdd:PHA03247  2660 rvsRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLtsladpPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAP 2739
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230  625 PTVSKATSPSTLVSTGPSSRSPATTLPKRPTSIKTEGKPADVKRMTAKSASADLSRSKTTSASSVKRNTTPTGAAPPAGM 704
Cdd:PHA03247  2740 APPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALP 2819
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039792230  705 TSTRVKPMSAPSRSSGALSVDKKPTSTKPS-----SSAP--RVSRLATTVSAPDLKSVRSK 758
Cdd:PHA03247  2820 PAASPAGPLPPPTSAQPTAPPPPPGPPPPSlplggSVAPggDVRRRPPSRSPAAKPAAPAR 2880
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
517-818 3.60e-04

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 44.68  E-value: 3.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 517 KKAKPLATTQPAKTSTSKAKTQPTSLPKQPapttsgglnKKPMSLASGSVPAAPHKrpaaatatarpstlPARDVKPKPI 596
Cdd:PTZ00449  559 KKPGPAKEHKPSKIPTLSKKPEFPKDPKHP---------KDPEEPKKPKRPRSAQR--------------PTRPKSPKLP 615
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 597 TEAKVAEKRTSPSKPSSapalkpgPKTTPTVSKATSPstlvstgpsSRSPATTLPKRPTSIKTEGKPAD--VKRMTAKSA 674
Cdd:PTZ00449  616 ELLDIPKSPKRPESPKS-------PKRPPPPQRPSSP---------ERPEGPKIIKSPKPPKSPKPPFDpkFKEKFYDDY 679
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 675 SADLSRSKTT--------SASSVKRNTTPTGAAPPagMTSTRVKPMSAPSRSSGALSVDKKPTSTKPSSSaprvsrlaTT 746
Cdd:PTZ00449  680 LDAAAKSKETkttvvldeSFESILKETLPETPGTP--FTTPRPLPPKLPRDEEFPFEPIGDPDAEQPDDI--------EF 749
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039792230 747 VSAPDLKSVRSKvgstENIKHQPGGGRAKVEKKTEAATTAGKpEPNAVTKAAGSIASAQKPPAGKVQIVSKK 818
Cdd:PTZ00449  750 FTPPEEERTFFH----ETPADTPLPDILAEEFKEEDIHAETG-EPDEAMKRPDSPSEHEDKPPGDHPSLPKK 816
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
512-750 7.93e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 43.30  E-value: 7.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 512 PPSPEKKAKPLATTQPAKTSTSKAKTQPTSLPKQPAPTTsgglnkKPMSLASGSVPAAPhKRPAAATATARPSTLPARDV 591
Cdd:PRK07003  374 ARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAP------KAAAAAAATRAEAP-PAAPAPPATADRGDDAADGD 446
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 592 KPKPITEAKVAEKRTSPSKPSSAPALKPGPKTTPTVSK----ATSPSTLVSTGPSSRSPATTLPKRPTSIKTEGKPAdvk 667
Cdd:PRK07003  447 APVPAKANARASADSRCDERDAQPPADSGSASAPASDAppdaAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPA--- 523
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 668 rmtAKSASADLSRSKTTSASSVKRNTtpTGAAppAGMTSTRVKPMSAPSRSSGALSVDKKPTSTKPSSSAPRVSRLATTV 747
Cdd:PRK07003  524 ---AAAPPAPEARPPTPAAAAPAARA--GGAA--AALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQV 596

                  ...
gi 1039792230 748 SAP 750
Cdd:PRK07003  597 PTP 599
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
545-741 1.10e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 42.94  E-value: 1.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 545 QPAPTTSGGLNKKPMSLASGSVPAAPHKRPAAATATARPSTLPAR-----DVKPKPITEAKVAEKRTSPSKPSSAPALKP 619
Cdd:PRK12323  373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARavaaaPARRSPAPEALAAARQASARGPGGAPAPAP 452
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 620 GPKTTPTVSKATSPStlvstGPSSRSPATTLPKRPTSIKTEGKPADV-----KRMTAKSASADLSRSKTTSASSVKRNTT 694
Cdd:PRK12323  453 APAAAPAAAARPAAA-----GPRPVAAAAAAAPARAAPAAAPAPADDdpppwEELPPEFASPAPAQPDAAPAGWVAESIP 527
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1039792230 695 PTGAAPPAGMTSTRVKPMSAPSRSSGALSVDKKPTSTKPSSSAPRVS 741
Cdd:PRK12323  528 DPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLP 574
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
463-734 1.33e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 42.61  E-value: 1.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 463 KEIEVTATQSIPSL----LLEETPRDGVSRQEEAKAAVGVTGNDITTPPNKEPPPSPEKKAKPLAT-TQPAKTSTSKAKT 537
Cdd:PLN03209  301 KVVEVIAETTAPLTpmeeLLAKIPSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVvPRPLSPYTAYEDL 380
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 538 QPtslPKQPAPTTSGGLNKKPMSLASGSVPAAPHKRPAAATATARPSTLPARDVKPK--PITEAKVAEKRTSPSKPSSAP 615
Cdd:PLN03209  381 KP---PTSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKtrPLSPYARYEDLKPPTSPSPTA 457
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 616 ALKPGPKTTPTVSKATSPSTLVSTgpSSRSPATTLPKRPTSIKTEGKPADVKRMTAKSASADLSRSKTTS---ASSVKRN 692
Cdd:PLN03209  458 PTGVSPSVSSTSSVPAVPDTAPAT--AATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSStneVVKVGNS 535
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1039792230 693 TTPTGAAPPAGMTSTRVKPMSAPSRSSGAlsvdKKPTSTKPS 734
Cdd:PLN03209  536 APPTALADEQHHAQPKPRPLSPYTMYEDL----KPPTSPTPS 573
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
525-807 1.84e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 436069 [Multi-domain]  Cd Length: 480  Bit Score: 41.83  E-value: 1.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 525 TQPAKTSTSKAKTQPTSLPKQPA-PTTSGGLNKKpmslASGSVPAAPHKRPAAATATARPSTLPARDVKPKPITEAKVAE 603
Cdd:pfam17823  72 TSAAHLNSTEVKAEHTPHGTDLSePATREGAADG----AASRALAAAASSSPSSAAQSAPTTIAGLPSLASSAPMAAAPR 147
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 604 KRTSPSKPSSAPALKPGPKTTPTVSKATSPSTLVSTGPSSRSP-----------------ATTLPKRPTSIKTEGKPADV 666
Cdd:pfam17823 148 TNAASNAPTAAASSTAAASGAPTTAASSAPATLTPASGISTAAtatghpaagtalaavgnSSPAAGTVTAAVGTVTPAAL 227
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 667 KRMTAKSASADLSRSKTTSASSVKRNTTPTGAAPpagmTSTRVKPMSAPSRSSG-----ALSVDKKPTSTKPSssaPRVS 741
Cdd:pfam17823 228 ATLAAAAGTVASAAGTINTGDPHARRLSPAKHMP----SDTSARNPAAPSGAQAqgliiQVSTDQPVHNTAGE---PTPS 300
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039792230 742 RLATTVSAPDLKSVRSK----VGSTENIKHQPGGGRAKV-----EKKTEAATTAGKPEPNAVTKAAGSIASAQKP 807
Cdd:pfam17823 301 PSNTTLEPNTPKSVASTnlavVTTTKAQAKEPSASPVPVlhtsmIPEVEATSPTTQPSPLLPTQGAAGPGILLAP 375
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
558-754 1.92e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 41.84  E-value: 1.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 558 PMSLASGSVPAAPHKRPAAATATARPSTLP--ARDVKPKPITEAKVAEKRTSPSKPSSAP--ALKPGPKTTPTVSKATSP 633
Cdd:PLN03209  331 KESDAADGPKPVPTKPVTPEAPSPPIEEEPpqPKAVVPRPLSPYTAYEDLKPPTSPIPTPpsSSPASSKSVDAVAKPAEP 410
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 634 STLVSTGPSSRSPATTLPKRPTSIKTEGKP----ADVKRMTAKSASADLSRSKTTSASSVKRNTTPTGAAPPAGMTSTRV 709
Cdd:PLN03209  411 DVVPSPGSASNVPEVEPAQVEAKKTRPLSPyaryEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPP 490
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1039792230 710 KPMSAPSRSSGALSVDKKPTSTKPSSSAPRVSRLATTVSAPDLKS 754
Cdd:PLN03209  491 PANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNS 535
PHA03269 PHA03269
envelope glycoprotein C; Provisional
527-643 1.97e-03

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 42.02  E-value: 1.97e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 527 PAKTSTSKAKTQPtslpkQPAPTTSGGLNKKPmSLASGSVPAAPHKRPAAATATARPSTlpardvKPKPITEAKVAEKRT 606
Cdd:PHA03269   42 PAPAPHQAASRAP-----DPAVAPTSAASRKP-DLAQAPTPAASEKFDPAPAPHQAASR------APDPAVAPQLAAAPK 109
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1039792230 607 SPSK--PSSAPALKPGPKTTP--TVSKATSPSTLVSTGPSS 643
Cdd:PHA03269  110 PDAAeaFTSAAQAHEAPADAGtsAASKKPDPAAHTQHSPPP 150
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
599-824 2.80e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 41.45  E-value: 2.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 599 AKVAEKRTSPSKPSSAPALKPGPkTTPTVSKATSPStlVSTGPSSRSPATTLPKRPTSIKTEGKPADVKRMTAKSASADL 678
Cdd:PLN03209  321 AKIPSQRVPPKESDAADGPKPVP-TKPVTPEAPSPP--IEEEPPQPKAVVPRPLSPYTAYEDLKPPTSPIPTPPSSSPAS 397
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230 679 SRSKTTSASSVKRNTTPTGAAPPagmTSTRVKPMSAPSRSSGALSVD------KKPTSTKPSSSAPRVSRLATTVSAPDL 752
Cdd:PLN03209  398 SKSVDAVAKPAEPDVVPSPGSAS---NVPEVEPAQVEAKKTRPLSPYaryedlKPPTSPSPTAPTGVSPSVSSTSSVPAV 474
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039792230 753 KSVRSKVGSTENIKHQPGGGRAKVEKKTEA-ATTAGKPEPNAVTKAAGSIASAQKPPAGKVQIVSKKVSYSHI 824
Cdd:PLN03209  475 PDTAPATAATDAAAPPPANMRPLSPYAVYDdLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHH 547
PHA03247 PHA03247
large tegument protein UL36; Provisional
521-748 3.89e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 3.89e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230  521 PLATTQPAKTSTSKAKTQPTSLPKQPAPTTsgGLNKKPMSLASGSVPAAPHKRPAaatatarpstlPARDVKPKPITEAK 600
Cdd:PHA03247  2814 PAAALPPAASPAGPLPPPTSAQPTAPPPPP--GPPPPSLPLGGSVAPGGDVRRRP-----------PSRSPAAKPAAPAR 2880
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230  601 VAEKRTS---PSKPSSAPALKPGPKTTPTVSKATSPSTLVSTGPSSRSPATTLPkrptsikTEGKPADVKRMTAKSASAd 677
Cdd:PHA03247  2881 PPVRRLArpaVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPP-------PPPRPQPPLAPTTDPAGA- 2952
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039792230  678 lsrSKTTSASSVKRNttptGAAPPAGMTSTRVK-PMSAPSRSSGAlsvdkKPTSTKPSSSAPRVSRLATTVS 748
Cdd:PHA03247  2953 ---GEPSGAVPQPWL----GALVPGRVAVPRFRvPQPAPSREAPA-----SSTPPLTGHSLSRVSSWASSLA 3012
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
678-754 8.81e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 39.49  E-value: 8.81e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039792230 678 LSRSKTTSASSVKRNTTPTGAAPPAgmTSTRVKPMSAPSRSSGALSVDKKPTSTKPSSSAPRVSRLATTVSAPDLKS 754
Cdd:TIGR00601  74 VSKPKTGTGKVAPPAATPTSAPTPT--PSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSSGSDAAS 148
PHA03247 PHA03247
large tegument protein UL36; Provisional
558-810 9.91e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.92  E-value: 9.91e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230  558 PMSLASGSVPAAPHKrpaaatatarpsTLPARDVKPKPITEAKVAEKRTSPSKPSSAPALKPG-PKTTPTVSKATSPSTL 636
Cdd:PHA03247  2552 PPPLPPAAPPAAPDR------------SVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVdDRGDPRGPAPPSPLPP 2619
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230  637 VSTGP----SSRSPATTLPKRPTSIKTEGKPADvkRMTAKSASADLSR-----SKTTSASSVKRNTTPTGAAPPAGMTST 707
Cdd:PHA03247  2620 DTHAPdpppPSPSPAANEPDPHPPPTVPPPERP--RDDPAPGRVSRPRrarrlGRAAQASSPPQRPRRRAARPTVGSLTS 2697
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039792230  708 RVK-------PMSAPSRSSGALSVDKKPTSTKPSSSAP--------------------RVSRLATTVSAPDLKSVRSKVG 760
Cdd:PHA03247  2698 LADpppppptPEPAPHALVSATPLPPGPAAARQASPALpaapappavpagpatpggpaRPARPPTTAGPPAPAPPAAPAA 2777
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|
gi 1039792230  761 STENIKHQPGGGRAKVEKKTEAATTAGKPEPNAVTKAAGSIASAQKPPAG 810
Cdd:PHA03247  2778 GPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGP 2827
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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