|
Name |
Accession |
Description |
Interval |
E-value |
| PACT_coil_coil |
pfam10495 |
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil ... |
2807-2885 |
1.36e-26 |
|
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil region close to the C-terminus of centrosomal proteins that is directly responsible for recruiting AKAP-450 and pericentrin to the centrosome. Hence the suggested name for this region is a PACT domain (pericentrin-AKAP-450 centrosomal targeting). This domain is also present at the C-terminus of coiled-coil proteins from Drosophila and S. pombe, and that from the Drosophila protein is sufficient for targeting to the centrosome in mammalian cells. The function of these proteins is unknown but they seem good candidates for having a centrosomal or spindle pole body location. The final 22 residues of this domain in AKAP-450 appear specifically to be a calmodulin-binding domain indicating that this member at least is likely to contribute to centrosome assembly.
Pssm-ID: 463115 Cd Length: 77 Bit Score: 104.98 E-value: 1.36e-26
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039732380 2807 YLRAESFRKALIYQKKYLLLLIGGFQDSEQETLSMIAHLGVFPSKADKKitmSRPFTKFRTAVRVVIAVLRLRFLVKKW 2885
Cdd:pfam10495 2 LLREESFRKDLAYQKKYLLLLLGGYQACNKADLRLLAQMGVTPPDDRPS---RKPRRKLKSAALAVIAIARMKRLAREW 77
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1084-1672 |
3.24e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.66 E-value: 3.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1084 QKQQELLERLREESAAKDRLALELHTAKglLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEK 1163
Cdd:COG1196 206 ERQAEKAERYRELKEELKELEAELLLLK--LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1164 SVLWNQKETLTNEAKEREAGSpvlpAHKDTALQEEVESLTRVQWEsRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQ 1243
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDI----ARLEERRRELEERLEELEEE-LAELEEELEELEEELEELEEELEEAEEELEEAEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1244 LAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAARprppgprdsQCVQLDEEVELLQEK 1323
Cdd:COG1196 359 ELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE---------RLERLEEELEELEEA 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1324 LREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMGD--LLLTT 1401
Cdd:COG1196 430 LAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADyeGFLEG 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1402 VSRSGLDEAGCPMLPQGSSSRGPEAQPDVTERALLqhENEVVHRRNSEIDELKSLIENLQEN-------------QRQLQ 1468
Cdd:COG1196 510 VKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAAL--AAALQNIVVEDDEVAAAAIEYLKAAkagratflpldkiRARAA 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1469 KDKAEEIEQLHEVIEKLQSELSLMGPKVHEVSDPQAGSLHSELACLRGEGLGGQALRSELQAAQAAKEVF--GQLLADQA 1546
Cdd:COG1196 588 LAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSagGSLTGGSR 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1547 HGHSQALEALQQRLQDAEEVAARHLAELEHcVALREAEVEAMASQIQEFAATLKAKEAIIEQRDLEIDAvnkwkvshsle 1626
Cdd:COG1196 668 RELLAALLEAEAELEELAERLAEEELELEE-ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAERE----------- 735
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 1039732380 1627 leAILLALAHFRHALEQQTCATPDEPPELRQLRVQCARLSHQLQVL 1672
Cdd:COG1196 736 --ELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
118-584 |
1.07e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.12 E-value: 1.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 118 LELEALRLSLNNMHTAQLELTQA-NLQKEKETALTELREMLNGRRAQELALLQSRQQcELELLREQHAREKEEMAlrsgq 196
Cdd:COG1196 281 LELEEAQAEEYELLAELARLEQDiARLEERRRELEERLEELEEELAELEEELEELEE-ELEELEEELEEAEEELE----- 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 197 EAAELKEKLRSEMEKNAQTIETLKQDWESERELCLENLRQELSLKHQsemeglQSQFQKELSEQKVELEKIFQAKHEAEV 276
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ------LEELEEAEEALLERLERLEEELEELEE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 277 SLKNLEAQHQAAIKKLQEDLQSEhcQYLQDLEQKFREKEKAKELELETLQASYEDLKAQSQEEIRLLWSQLEsMKTNREE 356
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAAEEE--AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE-AEADYEG 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 357 LNGSWDPVLAQASHLEELEHLRSGFAQQQQQERAQHESELEHLRVYFEKKLKDAEKTYQEDLTVFQQRLQEAREDSLEST 436
Cdd:COG1196 506 FLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRAR 585
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 437 EISSSCVLPEETSGREGKEPPDPLDLQLGQPKVQESLVEDCQVKLSKAEEKIQQMKEEFQKKEAEWELSREELKREAEER 516
Cdd:COG1196 586 AALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGG 665
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039732380 517 LASMFLELREKAESEKLSIISRFEHRESSMRHLQDQQAAQILDLERSLMEQQGHLRQLEQELTRDDLL 584
Cdd:COG1196 666 SRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAE 733
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
133-647 |
3.06e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 66.70 E-value: 3.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 133 AQLELTQANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELLREQHAREKEEM-------------ALRSGQEAA 199
Cdd:PTZ00121 1263 AHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAkkkaeeakkkadaAKKKAEEAK 1342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 200 ELKEKLRSEMEKNAQTIETLKQDWESERELCLENLRQELSLKHQSEMEGLQSQFQKELSEQKVELE----------KIFQ 269
Cdd:PTZ00121 1343 KAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADelkkaaaakkKADE 1422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 270 AKHEAEVSLKNLEAQHQAAIKKLQEDLQ--SEHCQYLQDLEQKFREKEKAKELELETLQASYEDLKAQSQEEIRLLWSQL 347
Cdd:PTZ00121 1423 AKKKAEEKKKADEAKKKAEEAKKADEAKkkAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEA 1502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 348 ---ESMKTNREELNGSWDPVLAQASHLEELEHLRSGFAQQQQQERAQHESELEHLRVYFEKKLKDAEKTYQEDLTVFQQR 424
Cdd:PTZ00121 1503 kkaAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK 1582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 425 LQEAREdsLESTEISSSCVLPEETSGREGKEPPDPLDLQLGQPKVQESLVEDCQV---------------KLSKAEEKIQ 489
Cdd:PTZ00121 1583 AEEAKK--AEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVeqlkkkeaeekkkaeELKKAEEENK 1660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 490 QMKEEFQKKEAEWELSREELKREAEERLASMFLELREKAESEKLSIISRFEHRESsmrhlqdQQAAQILDLERSLMEQQG 569
Cdd:PTZ00121 1661 IKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEK-------KKAEELKKAEEENKIKAE 1733
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039732380 570 HLRQLEQELTRDdllpcsqcGQEPAMAQEEKNGALLREKEDCAlqllmAQNRFLEERKEIMEKFAKEQDAFLRDAQEK 647
Cdd:PTZ00121 1734 EAKKEAEEDKKK--------AEEAKKDEEEKKKIAHLKKEEEK-----KAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
510-1179 |
1.98e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.80 E-value: 1.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 510 KREAEERLASM------------------------------FLELREKAE----SEKLSIISRFEHRESSMRHLQDQQAA 555
Cdd:COG1196 174 KEEAERKLEATeenlerledilgelerqleplerqaekaerYRELKEELKeleaELLLLKLRELEAELEELEAELEELEA 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 556 QILDLERSLMEQQGHLRQLEQELTRDDLlpcsqcgqepamaQEEKNGALLREKEDCALQLLMAQNRFLEERKEIMEKFAK 635
Cdd:COG1196 254 ELEELEAELAELEAELEELRLELEELEL-------------ELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 636 EQDAFLRDAQEKHNHELQLLQQGHQQQLLALRMELETKHRSELTEQLASSESRRQALLETHVAELQVKHNAEISALEKR- 714
Cdd:COG1196 321 LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAa 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 715 HLSNLDELESCYVADVQTIRDEHQQALELLRAELEEQLQKKEScHREMLTQELENLKRQHAEELQSVRDSLRMEMSAQHI 794
Cdd:COG1196 401 QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA-LEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 795 ENGKGPAADLQGAHQQDPAMALHNEGHLlveDGDAVLRSVDAEGLLHQAGPQELGDAHTVEMQKSQAELAKPQELQASQD 874
Cdd:COG1196 480 AELLEELAEAAARLLLLLEAEADYEGFL---EGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDD 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 875 QVAQVRDKvFLLNRELEecRAELEQLQQRRERENQEgttlicmlRADLELAQGEGKALRDALRRLLDLFGDTLKAAVTLK 954
Cdd:COG1196 557 EVAAAAIE-YLKAAKAG--RATFLPLDKIRARAALA--------AALARGAIGAAVDLVASDLREADARYYVLGDTLLGR 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 955 SRISERAgllldheDAADTSDARLAAAALgdmwsdEGLLEIDRTLPEGAETSsvceisshvcesffispentldceqpiR 1034
Cdd:COG1196 626 TLVAARL-------EAALRRAVTLAGRLR------EVTLEGEGGSAGGSLTG---------------------------G 665
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1035 RVYQSLSTAVEGLLEMALDSSKQLEEARQLhrcvEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLL 1114
Cdd:COG1196 666 SRRELLAALLEAEAELEELAERLAEEELEL----EEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEEL 741
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039732380 1115 EGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQ-------AARELLTLKEEKSVLWNQKETLTNEAKE 1179
Cdd:COG1196 742 LEEEELLEEEALEELPEPPDLEELERELERLEREIEAlgpvnllAIEEYEELEERYDFLSEQREDLEEARET 813
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1056-1707 |
2.11e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 2.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1056 KQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESE 1135
Cdd:TIGR02168 288 KELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1136 QQLILELEDLRKQLQQAARELLTLKEEKSVLWNQ-----------KETLTNEAKEREAGSPVLPAHKDTALQEEVESLTR 1204
Cdd:TIGR02168 368 EELESRLEELEEQLETLRSKVAQLELQIASLNNEierlearlerlEDRRERLQQEIEELLKKLEEAELKELQAELEELEE 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1205 VQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEfq 1284
Cdd:TIGR02168 448 ELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVL-- 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1285 QEIQRLEGQLRQAARPRPPGPRDSQCVQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQR 1364
Cdd:TIGR02168 526 SELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAK 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1365 QMVQLQEELEKQKKSM-------EELKEK-EILKQENMGDLLLT----TVSRSG-------------------LDEAGCP 1413
Cdd:TIGR02168 606 DLVKFDPKLRKALSYLlggvlvvDDLDNAlELAKKLRPGYRIVTldgdLVRPGGvitggsaktnssilerrreIEELEEK 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1414 MLPQGSSSRGPEAQPDVTERALLQHENEV-------------VHRRNSEIDELKSLIENLQENQRQLQK---DKAEEIEQ 1477
Cdd:TIGR02168 686 IEELEEKIAELEKALAELRKELEELEEELeqlrkeleelsrqISALRKDLARLEAEVEQLEERIAQLSKeltELEAEIEE 765
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1478 LHEVIEKLQSELSLMGPKVHEVSDPQAG-------------SLHSELACLRGEGLGGQALRSELQAAQAAKEVFGQLLAD 1544
Cdd:TIGR02168 766 LEERLEEAEEELAEAEAEIEELEAQIEQlkeelkalrealdELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEE 845
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1545 QAHGHSQALEALQQRLQDAEEVAARHLAELEHCVALREAEVEAMA---SQIQEFAATLKAKEAIIEQRDLEIDAVNKWKV 1621
Cdd:TIGR02168 846 QIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAllrSELEELSEELRELESKRSELRRELEELREKLA 925
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1622 SHSLELEAILLALAHFRHALEQQTCATPDEPPELRQLRVQCARlshqlqvlyrpflKCRMQLDQHQPHVASIGCANPCAD 1701
Cdd:TIGR02168 926 QLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEE-------------EARRRLKRLENKIKELGPVNLAAI 992
|
....*.
gi 1039732380 1702 DELEQE 1707
Cdd:TIGR02168 993 EEYEEL 998
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2213-2567 |
8.61e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 8.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2213 RRQVELLAYKVEQEKCIANELQKTLSKEQETASDVRKRLVVEQNAVQDLKSELHACKQENTSLLESLDKVQQEVLRLRyg 2292
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLE-- 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2293 hvtwsycgtssasAGRAVLDGKEKELKVVLEELESERGKGQALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNN 2372
Cdd:COG1196 302 -------------QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2373 QLCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQEACARQ 2452
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2453 ETQVQHALLRKLKAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQErcVELRREKEVSGNLRSAVDALRTHKQELGC-CL 2531
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL--LLLEAEADYEGFLEGVKAALLLAGLRGLAgAV 526
|
330 340 350
....*....|....*....|....*....|....*.
gi 1039732380 2532 QREREKAAWLQAELEQLSARVKEQEARKDARRMERR 2567
Cdd:COG1196 527 AVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAA 562
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
345-1163 |
1.33e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 1.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 345 SQLESMKTN-------REELNGSWDPVLAQASHLE-------ELEHLRSGFAQQQQQERAQHESELEHLrvyfEKKLKDA 410
Cdd:TIGR02168 179 RKLERTRENldrlediLNELERQLKSLERQAEKAErykelkaELRELELALLVLRLEELREELEELQEE----LKEAEEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 411 EKTYQEDLTVFQQRLQEARedsLESTEISSSCVLPEETSGREGKEPPDpLDLQLGQPKVQESLVEDCQVKLSKAEEKIQQ 490
Cdd:TIGR02168 255 LEELTAELQELEEKLEELR---LEVSELEEEIEELQKELYALANEISR-LEQQKQILRERLANLERQLEELEAQLEELES 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 491 MKEEFQKKEAEWELSREELKREAEErLASMFLELREKAESEKLSIISRFEHRES------SMRHLQDQQAAQILDLERSL 564
Cdd:TIGR02168 331 KLDELAEELAELEEKLEELKEELES-LEAELEELEAELEELESRLEELEEQLETlrskvaQLELQIASLNNEIERLEARL 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 565 MEQQGHLRQLEQELtrddllpcSQCGQEPAMAQEEKNGALLREKEDCALQLLMAQNRFLEERKEIMEKFAKEQDAfLRDA 644
Cdd:TIGR02168 410 ERLEDRRERLQQEI--------EELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQA-LDAA 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 645 QEKHNHelqllqqGHQQQLLALRMELETKHRSELTEQLASSESRRQALLETHVAELQVKHNAEIS---ALEKRHLSNLDE 721
Cdd:TIGR02168 481 ERELAQ-------LQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAieaALGGRLQAVVVE 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 722 LESCYVADVQTIRdEHQQALELLRAELEEQLQKKESCHREMLTQelENLKRQHAEELQSVRDSLRMEMSAqhIENGKGPA 801
Cdd:TIGR02168 554 NLNAAKKAIAFLK-QNELGRVTFLPLDSIKGTEIQGNDREILKN--IEGFLGVAKDLVKFDPKLRKALSY--LLGGVLVV 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 802 ADLQGAHQQdpAMALHNEGHLLVEDGDAVLRSvdaeGLLhqAGPQELGDAHTVEMQKSQAELAkpQELQASQDQVAQVRD 881
Cdd:TIGR02168 629 DDLDNALEL--AKKLRPGYRIVTLDGDLVRPG----GVI--TGGSAKTNSSILERRREIEELE--EKIEELEEKIAELEK 698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 882 KVFLLNRELEECRAELEQLQQRRERENQEgttlICMLRADLELAQGEGKALRDALRRLLDLFGDTLKAAVTLKSRISERA 961
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSRQ----ISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAE 774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 962 GLLLDHEDAADTSDARLAAAAlgdmwsdEGLLEIDRTLPEGAETSSVCEISSHVCESFFISPENTL-DCEQPIRRVYQSL 1040
Cdd:TIGR02168 775 EELAEAEAEIEELEAQIEQLK-------EELKALREALDELRAELTLLNEEAANLRERLESLERRIaATERRLEDLEEQI 847
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1041 STAVEGLLEMAL----------DSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTA 1110
Cdd:TIGR02168 848 EELSEDIESLAAeieeleelieELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQL 927
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|...
gi 1039732380 1111 KGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEK 1163
Cdd:TIGR02168 928 ELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
142-529 |
2.28e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 60.37 E-value: 2.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 142 LQKEKETALTELREMLNGRRAQELALLQSRQQCELELLREQHAREKEEMALRSGQEAAELKEKLRSEMEKNAQTIETLKQ 221
Cdd:pfam02463 634 LTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELK 713
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 222 DWESERELCLENLRQELSLKHQSEMEGLQSQF-QKELSEQKVELEKIFQAKHEAEVSLKNLEAQHQAA--IKKLQEDLQS 298
Cdd:pfam02463 714 KLKLEAEELLADRVQEAQDKINEELKLLKQKIdEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREktEKLKVEEEKE 793
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 299 EHCQYLQDLEQKFREKEKAKELELETLQASYEDLKAQSQEEIRLLwSQLESMKTNREELNgswdpvlaqashlEELEHLR 378
Cdd:pfam02463 794 EKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEEL-ALELKEEQKLEKLA-------------EEELERL 859
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 379 SGFAQQQQQERAQHESELEHLRVYFEKKLKDAEKTYQEDLTVFQQRLQEAREDSLESTEISSSCVLPEETSGREGKEPPD 458
Cdd:pfam02463 860 EEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEE 939
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039732380 459 PLDLQLGQPKVQESLVEDCQVKLSKAEEKIQQ-------MKEEFQKKEAEWELSREELKREAEERLASMFLELREKAE 529
Cdd:pfam02463 940 LLLEEADEKEKEENNKEEEEERNKRLLLAKEElgkvnlmAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQ 1017
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
156-430 |
2.12e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 2.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 156 MLNGRRAQELALLQSRQQcELELLREQhaREKEEMALRSGQEAAELKEKLRSEMEKNAQTIETLKQDWE---SERELCLE 232
Cdd:TIGR02168 660 VITGGSAKTNSSILERRR-EIEELEEK--IEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSrqiSALRKDLA 736
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 233 NLRQ--ELSLKHQSEMEGLQSQFQKELSEQKVELEKIFQAKHEAEVSLKNLEA---QHQAAIKKLQEDLQSEHCQY--LQ 305
Cdd:TIGR02168 737 RLEAevEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAqieQLKEELKALREALDELRAELtlLN 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 306 DLEQKFREKEKAKELELETLQASYEDLKAQS---QEEIRLLWSQLESMKTNREELNGSWDPVLAQASHLEELEHLRSGFA 382
Cdd:TIGR02168 817 EEAANLRERLESLERRIAATERRLEDLEEQIeelSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEL 896
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1039732380 383 QQQQQERAQHESELEHLRVYFEkKLKDAEKTYQEDLTVFQQRLQEARE 430
Cdd:TIGR02168 897 EELSEELRELESKRSELRRELE-ELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2354-2614 |
1.16e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 1.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2354 SRALEELKLSLEKQLAQNNQLCVALKHERAAKDNLQKE---LQIEASRCEALLAQEKGQLSELQKSLEAERSR----SLE 2426
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEEleqLRKELEELSRQISALRKDLARLEAEVEQLEERiaqlSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2427 LSEALQHERLLTEQLSRNSQEACARQETQVQhaLLRKLKAEKTRALELEAMLEKVQKQAAHTQqqleaqaqercVELRRE 2506
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEE--LEAQIEQLKEELKALREALDELRAELTLLN-----------EEAANL 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2507 KEVSGNLRSAVDALRTHKQELGCCLQREREKAAWLQAELEQLSARVKEQEARKDARRMERRSSRADLDKRKWQRDK--ET 2584
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEElsEE 902
|
250 260 270
....*....|....*....|....*....|
gi 1039732380 2585 LRELEIQRQRDEHKIEQLQRLVRELRWKEE 2614
Cdd:TIGR02168 903 LRELESKRSELRRELEELREKLAQLELRLE 932
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
485-1381 |
1.15e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.51 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 485 EEKIQQMKEEFQKKEAEWELSREELKREAEERLASMFLELREKAESEKLSIISRFEHRESSMRHLQDQQAAQILDLERSL 564
Cdd:pfam02463 194 ELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKE 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 565 MEQQghLRQLEQELTRDDLLPCSQCGQEPAMAQEEKNGALLREKedcaLQLLMAQNRFLEERKEimekfaKEQDAFLRDA 644
Cdd:pfam02463 274 NKEE--EKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEK----LKESEKEKKKAEKELK------KEKEEIEELE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 645 QEKHNHELQLLQQGHQQQLLALRMELETKHRSELTEQLASSESRRQALLETHVAELQVKHNAEISALEKRHLSNLDELES 724
Cdd:pfam02463 342 KELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLL 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 725 CYVADVQTIRDEHQQALELLRAELEEQLQKKEschremLTQELENLKRQHAEELQSVRdslrmemsAQHIENGKGPAADL 804
Cdd:pfam02463 422 KEEKKEELEILEEEEESIELKQGKLTEEKEEL------EKQELKLLKDELELKKSEDL--------LKETQLVKLQEQLE 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 805 QGAHQQDPAMALHNEGHLLVEDGDAVLRSVDAEGLLHQAGPQELGDAHTVemqksqAELAKPQELQASQDQVAQVRDKVF 884
Cdd:pfam02463 488 LLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVA------VENYKVAISTAVIVEVSATADEVE 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 885 llnrELEECRAELEQLQQRRERENQEGTTLICMLRADLELAQGEGKALRDALRRLLDLFGDTLKAAVTLKSRISERAGLL 964
Cdd:pfam02463 562 ----ERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKL 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 965 LDHEDAADTSDARLAAAALGDMWSDEGLLEIDRTLPEGAETSSVCEISSHVCESFFISPENTLDCEQPIRRVYQSLSTAV 1044
Cdd:pfam02463 638 KESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKL 717
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1045 EGLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALEL-HTAKGLLEGFKVEKVD 1123
Cdd:pfam02463 718 EAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEReKTEKLKVEEEKEEKLK 797
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1124 LQEALGKKEESEQQLILEledlrkQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAgspvlpahKDTALQEEVESLT 1203
Cdd:pfam02463 798 AQEEELRALEEELKEEAE------LLEEEQLLIEQEEKIKEEELEELALELKEEQKLEK--------LAEEELERLEEEI 863
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1204 RVQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRgcaQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEF 1283
Cdd:pfam02463 864 TKEELLQELLLKEEELEEQKLKDELESKEEKEKEEK---KELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEEL 940
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1284 QQEIQRLEGQLRQAArprppgprdsqcvqLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQ 1363
Cdd:pfam02463 941 LLEEADEKEKEENNK--------------EEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKK 1006
|
890
....*....|....*...
gi 1039732380 1364 RQMVQLQEELEKQKKSME 1381
Cdd:pfam02463 1007 LIRAIIEETCQRLKEFLE 1024
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2230-2615 |
3.22e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 3.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2230 ANELQKtlSKEQETASDVRK----RLVVEQNAVQDLKSELHACKQENTSLLESLDKVQQEVLR---LRYGHVTWSYCGTS 2302
Cdd:PTZ00121 1184 AEEVRK--AEELRKAEDARKaeaaRKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKaeeERNNEEIRKFEEAR 1261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2303 SASAGRAVLDGKEKELKVVlEELE--SERGKGQALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQLcvALKH 2380
Cdd:PTZ00121 1262 MAHFARRQAAIKAEEARKA-DELKkaEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAA--KKKA 1338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2381 ERAAKDNLQKELQIEASRCEALLAQEKGQLSELQKSLEAERSRSLELSealQHERLLTEQLSRNSQEACARQETqvqhal 2460
Cdd:PTZ00121 1339 EEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK---AEEKKKADEAKKKAEEDKKKADE------ 1409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2461 LRKLKAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQERCVELRREKEVSGNLRSAVDALRthKQELGCCLQREREKAAW 2540
Cdd:PTZ00121 1410 LKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK--KADEAKKKAEEAKKADE 1487
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039732380 2541 LQAELEQlsARVKEQEARKDArrmERRSSRADLDKRKWQRDKETLRELEIQRQRDEHKIEQLQRLVRELRWKEEV 2615
Cdd:PTZ00121 1488 AKKKAEE--AKKKADEAKKAA---EAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEEL 1557
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
203-532 |
5.27e-05 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 48.86 E-value: 5.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 203 EKLRSEMEKNAQT--------IETLKQDWESERELCLENLRQELSLKHQSEMEGLQSQFQKELSEQKvelekifqaKHEA 274
Cdd:NF033838 72 SEIQKSLDKRKHTqnvalnkkLSDIKTEYLYELNVLKEKSEAELTSKTKKELDAAFEQFKKDTLEPG---------KKVA 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 275 EVSLKNLEAQHQAAIKKlQEDLQSEHCQYLQDLEQKFREKE-KAKELELETLQAsyEDLKAQSQEEIRLLWSQLESMKtn 353
Cdd:NF033838 143 EATKKVEEAEKKAKDQK-EEDRRNYPTNTYKTLELEIAESDvEVKKAELELVKE--EAKEPRDEEKIKQAKAKVESKK-- 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 354 reelngswdpvlAQASHLEELEHLRsgfaqqqqqERAQHESELEHLRVYFEKKLKDAEKTYQEDLTVFQQR--LQE-ARE 430
Cdd:NF033838 218 ------------AEATRLEKIKTDR---------EKAEEEAKRRADAKLKEAVEKNVATSEQDKPKRRAKRgvLGEpATP 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 431 DSLESTEISSSCVLPEETsgregkePPDPlDLQLGQpKVQESlvedcQVKLSKAEEKIQQMKEEFQK------------- 497
Cdd:NF033838 277 DKKENDAKSSDSSVGEET-------LPSP-SLKPEK-KVAEA-----EKKVEEAKKKAKDQKEEDRRnyptntyktlele 342
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1039732380 498 --------KEAEWELSREELKR-EAEERLAsmflELREKAESEK 532
Cdd:NF033838 343 iaesdvkvKEAELELVKEEAKEpRNEEKIK----QAKAKVESKK 382
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
2314-2616 |
9.76e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.43 E-value: 9.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2314 KEKELKVVLEELESERgkgqALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQLCVA-LKHERAAKDNLQKEL 2392
Cdd:pfam02463 171 KKEALKKLIEETENLA----ELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDyLKLNEERIDLLQELL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2393 QIEASRCEALLAQEKGQLSELQKSLEAERSRslELSEALQHERLLTEQLSRNSQEACARQETQVQHALLRKLKAEKTRAL 2472
Cdd:pfam02463 247 RDEQEEIESSKQEIEKEEEKLAQVLKENKEE--EKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2473 ELEAMLEKVQKQAAHTQQQLEAQAQERCVELRREKEVSGNLRSAVDALRTHKQELGCCLQREREKAAWLQAELEQLSARV 2552
Cdd:pfam02463 325 KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEE 404
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039732380 2553 KEQEARKDARRMERRSSRADLDKRKWQRDKETLRELEIQRQRDEHKIEQLQRLVRELRWKEEVS 2616
Cdd:pfam02463 405 KEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELK 468
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
886-1386 |
9.87e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.11 E-value: 9.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 886 LNRELEECRAELEQLQQRRERENQEGTTLICMLrADLELAQGEGKALRDALRRLLDLFGDTLKAAVTLKSRISERAGLLL 965
Cdd:PRK02224 211 LESELAELDEEIERYEEQREQARETRDEADEVL-EEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 966 DHEDAADtsdARLAAAALGDMWSDEGLLEIDRTLPEGAETSSVCEisshvcesffispentlDCEQPIrrvyQSLSTAVE 1045
Cdd:PRK02224 290 ELEEERD---DLLAEAGLDDADAEAVEARREELEDRDEELRDRLE-----------------ECRVAA----QAHNEEAE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1046 GLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEK---- 1121
Cdd:PRK02224 346 SLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERdelr 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1122 -------VDLQEALGKKEESEQQL-----------------ILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTnEA 1177
Cdd:PRK02224 426 ereaeleATLRTARERVEEAEALLeagkcpecgqpvegsphVETIEEDRERVEELEAELEDLEEEVEEVEERLERAE-DL 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1178 KEREAGSpvlpahkdTALQEEVESLTRVQWESRKQSEKDRATlLSQMRVLESELEDQLVQHRGCAQLA--------EEVA 1249
Cdd:PRK02224 505 VEAEDRI--------ERLEERREDLEELIAERRETIEEKRER-AEELRERAAELEAEAEEKREAAAEAeeeaeearEEVA 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1250 TLKQQLAALDKHLRSQRQFMDDQAAEREHEreefqQEIQRLEGQLRQAARprppgprdsqcvQLDEEVELLQEK------ 1323
Cdd:PRK02224 576 ELNSKLAELKERIESLERIRTLLAAIADAE-----DEIERLREKREALAE------------LNDERRERLAEKrerkre 638
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039732380 1324 LREKLDG--FNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEkqkkSMEELKEK 1386
Cdd:PRK02224 639 LEAEFDEarIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELE----ELEELRER 699
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1189-1598 |
9.94e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.83 E-value: 9.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1189 AHKDTALQEEVESLtrvqwesrKQSEKDRATLLSQMRVLESELEDQLvqhrgcAQLAEEVATLKQQLAALDKHLRSQRQF 1268
Cdd:pfam12128 240 RPEFTKLQQEFNTL--------ESAELRLSHLHFGYKSDETLIASRQ------EERQETSAELNQLLRTLDDQWKEKRDE 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1269 MDDQAAEREHEREEFQQEIQRLEGQLRQAARPRPPGPR---------DSQCVQLDEEVELLQEKLREKLDGFNELVIK-- 1337
Cdd:pfam12128 306 LNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAadqeqlpswQSELENLEERLKALTGKHQDVTAKYNRRRSKik 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1338 -------KDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKsmeELKEKEILKQENMGDLllttvsrsgldea 1410
Cdd:pfam12128 386 eqnnrdiAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKL---EFNEEEYRLKSRLGEL------------- 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1411 gcpmlpqgsssRGPEAQPDVTERALLQHEN--EVVHRRNSEIDELKSLIENLQENQRQLQK--DKAEE-IEQLHEVIEKL 1485
Cdd:pfam12128 450 -----------KLRLNQATATPELLLQLENfdERIERAREEQEAANAEVERLQSELRQARKrrDQASEaLRQASRRLEER 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1486 QSELSlmgpKVHEVSDPQAGSLHSELA------------CLRGEGLGGQALRSELQAAQAAKE--VFG------QLLADQ 1545
Cdd:pfam12128 519 QSALD----ELELQLFPQAGTLLHFLRkeapdweqsigkVISPELLHRTDLDPEVWDGSVGGElnLYGvkldlkRIDVPE 594
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1039732380 1546 AHGHSQALEALQQRLQDAEEVAARHLAELEHCVALREAEVEAmASQIQEFAAT 1598
Cdd:pfam12128 595 WAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEK-ASREETFART 646
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PACT_coil_coil |
pfam10495 |
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil ... |
2807-2885 |
1.36e-26 |
|
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil region close to the C-terminus of centrosomal proteins that is directly responsible for recruiting AKAP-450 and pericentrin to the centrosome. Hence the suggested name for this region is a PACT domain (pericentrin-AKAP-450 centrosomal targeting). This domain is also present at the C-terminus of coiled-coil proteins from Drosophila and S. pombe, and that from the Drosophila protein is sufficient for targeting to the centrosome in mammalian cells. The function of these proteins is unknown but they seem good candidates for having a centrosomal or spindle pole body location. The final 22 residues of this domain in AKAP-450 appear specifically to be a calmodulin-binding domain indicating that this member at least is likely to contribute to centrosome assembly.
Pssm-ID: 463115 Cd Length: 77 Bit Score: 104.98 E-value: 1.36e-26
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039732380 2807 YLRAESFRKALIYQKKYLLLLIGGFQDSEQETLSMIAHLGVFPSKADKKitmSRPFTKFRTAVRVVIAVLRLRFLVKKW 2885
Cdd:pfam10495 2 LLREESFRKDLAYQKKYLLLLLGGYQACNKADLRLLAQMGVTPPDDRPS---RKPRRKLKSAALAVIAIARMKRLAREW 77
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1084-1672 |
3.24e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.66 E-value: 3.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1084 QKQQELLERLREESAAKDRLALELHTAKglLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEK 1163
Cdd:COG1196 206 ERQAEKAERYRELKEELKELEAELLLLK--LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1164 SVLWNQKETLTNEAKEREAGSpvlpAHKDTALQEEVESLTRVQWEsRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQ 1243
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDI----ARLEERRRELEERLEELEEE-LAELEEELEELEEELEELEEELEEAEEELEEAEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1244 LAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAARprppgprdsQCVQLDEEVELLQEK 1323
Cdd:COG1196 359 ELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE---------RLERLEEELEELEEA 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1324 LREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMGD--LLLTT 1401
Cdd:COG1196 430 LAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADyeGFLEG 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1402 VSRSGLDEAGCPMLPQGSSSRGPEAQPDVTERALLqhENEVVHRRNSEIDELKSLIENLQEN-------------QRQLQ 1468
Cdd:COG1196 510 VKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAAL--AAALQNIVVEDDEVAAAAIEYLKAAkagratflpldkiRARAA 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1469 KDKAEEIEQLHEVIEKLQSELSLMGPKVHEVSDPQAGSLHSELACLRGEGLGGQALRSELQAAQAAKEVF--GQLLADQA 1546
Cdd:COG1196 588 LAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSagGSLTGGSR 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1547 HGHSQALEALQQRLQDAEEVAARHLAELEHcVALREAEVEAMASQIQEFAATLKAKEAIIEQRDLEIDAvnkwkvshsle 1626
Cdd:COG1196 668 RELLAALLEAEAELEELAERLAEEELELEE-ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAERE----------- 735
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 1039732380 1627 leAILLALAHFRHALEQQTCATPDEPPELRQLRVQCARLSHQLQVL 1672
Cdd:COG1196 736 --ELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
118-584 |
1.07e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.12 E-value: 1.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 118 LELEALRLSLNNMHTAQLELTQA-NLQKEKETALTELREMLNGRRAQELALLQSRQQcELELLREQHAREKEEMAlrsgq 196
Cdd:COG1196 281 LELEEAQAEEYELLAELARLEQDiARLEERRRELEERLEELEEELAELEEELEELEE-ELEELEEELEEAEEELE----- 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 197 EAAELKEKLRSEMEKNAQTIETLKQDWESERELCLENLRQELSLKHQsemeglQSQFQKELSEQKVELEKIFQAKHEAEV 276
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ------LEELEEAEEALLERLERLEEELEELEE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 277 SLKNLEAQHQAAIKKLQEDLQSEhcQYLQDLEQKFREKEKAKELELETLQASYEDLKAQSQEEIRLLWSQLEsMKTNREE 356
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAAEEE--AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE-AEADYEG 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 357 LNGSWDPVLAQASHLEELEHLRSGFAQQQQQERAQHESELEHLRVYFEKKLKDAEKTYQEDLTVFQQRLQEAREDSLEST 436
Cdd:COG1196 506 FLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRAR 585
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 437 EISSSCVLPEETSGREGKEPPDPLDLQLGQPKVQESLVEDCQVKLSKAEEKIQQMKEEFQKKEAEWELSREELKREAEER 516
Cdd:COG1196 586 AALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGG 665
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039732380 517 LASMFLELREKAESEKLSIISRFEHRESSMRHLQDQQAAQILDLERSLMEQQGHLRQLEQELTRDDLL 584
Cdd:COG1196 666 SRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAE 733
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1037-1620 |
7.92e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.04 E-value: 7.92e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1037 YQSLSTAVEGLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEG 1116
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1117 FKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEksvLWNQKETLTNEAKEREagspvlpahkdtALQ 1196
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE---LAEAEEALLEAEAELA------------EAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1197 EEVESLTRVQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAER 1276
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1277 EHEREEFQQEIQRLEGQLRQAARPRPPgprdsqcVQLDEEVELLQEKLREKLDGFNELVIKKDFADQQ--------LLIQ 1348
Cdd:COG1196 459 EALLELLAELLEEAALLEAALAELLEE-------LAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLrglagavaVLIG 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1349 EEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKeilkqenmgdlLLTTVSRSGLDEAgcpmlpQGSSSRGPEAQP 1428
Cdd:COG1196 532 VEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAA-----------KAGRATFLPLDKI------RARAALAAALAR 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1429 DVTERALLQHENEVVHRRNSEIDELKSLIENLQENQRQLQKDKAEEIEQLHEVIEKLQSELSLMGPkvhevsdpqagslh 1508
Cdd:COG1196 595 GAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGG-------------- 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1509 selaclRGEGLGGQALRSELQAAQAAKEVFGQLLADQAHGHSQALEALQQRLQDAEEVAARHLAELEHCVALREAEVEAM 1588
Cdd:COG1196 661 ------SLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAER 734
|
570 580 590
....*....|....*....|....*....|..
gi 1039732380 1589 ASQIQEFAATLKAKEAIIEQRDLEIDAVNKWK 1620
Cdd:COG1196 735 EELLEELLEEEELLEEEALEELPEPPDLEELE 766
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1038-1561 |
1.05e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.65 E-value: 1.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1038 QSLSTAVEGLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQEL-------LERLREESAAKDRLALELHTA 1110
Cdd:COG1196 249 EELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLeqdiarlEERRRELEERLEELEEELAEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1111 KGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAgspvlpah 1190
Cdd:COG1196 329 EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAA-------- 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1191 KDTALQEEVESLTRVQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQFMD 1270
Cdd:COG1196 401 QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1271 DQAAEREHEREEF---QQEIQRLEGQLRQAARPR--PPGPRDSQCVQLDEEVELLQEKLREKLDGFNELVI--------- 1336
Cdd:COG1196 481 ELLEELAEAAARLlllLEAEADYEGFLEGVKAALllAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIvveddevaa 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1337 ------KKDFADQQLLIQEEEIKRLEETNASIQRQMVQ---------LQEELEKQKKSMEELKEKEILKQENMGDLLLTT 1401
Cdd:COG1196 561 aaieylKAAKAGRATFLPLDKIRARAALAAALARGAIGaavdlvasdLREADARYYVLGDTLLGRTLVAARLEAALRRAV 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1402 VSRSGLDEAGCPM---LPQGSSSRGPEAQPDVTERALLQHENEVVHRRNSEIDELKSLIENLQENQRQLQKDKAEEIEQL 1478
Cdd:COG1196 641 TLAGRLREVTLEGeggSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEE 720
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1479 HEVIEKLQSELSLMGPKVHEVSDPQAGSLHSELAcLRGEGLGGQALRSELQAAQAAKEVFGQ--LLADQAHghsqalEAL 1556
Cdd:COG1196 721 LEEEALEEQLEAEREELLEELLEEEELLEEEALE-ELPEPPDLEELERELERLEREIEALGPvnLLAIEEY------EEL 793
|
....*
gi 1039732380 1557 QQRLQ 1561
Cdd:COG1196 794 EERYD 798
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
142-723 |
1.15e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.65 E-value: 1.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 142 LQKEKETAL--TELREMLNGRRAQELALlqsrqqcELELLREQHAREKEEMalrsgQEAAELKEKLRSEMEKNAQTIETL 219
Cdd:COG1196 205 LERQAEKAEryRELKEELKELEAELLLL-------KLRELEAELEELEAEL-----EELEAELEELEAELAELEAELEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 220 KQDweserelcLENLRQELSLKHQSEMEgLQSQFQKELSEQKVELEKIfQAKHEAEVSLKNLEAQHQAAIKKLQEDLQSe 299
Cdd:COG1196 273 RLE--------LEELELELEEAQAEEYE-LLAELARLEQDIARLEERR-RELEERLEELEEELAELEEELEELEEELEE- 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 300 hcqyLQDLEQKFREKEKAKELELETLQASYEDLKAQSQEEIRLLWSQLESMKTNREELngswdpvLAQASHLEELEHLRS 379
Cdd:COG1196 342 ----LEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA-------AELAAQLEELEEAEE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 380 GfaqqQQQERAQHESELEHLrvyfEKKLKDAEKTYQEDLTVFQQRLQEAREDSLESTEISSScVLPEETSGREGKEPPDP 459
Cdd:COG1196 411 A----LLERLERLEEELEEL----EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLEL-LAELLEEAALLEAALAE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 460 LDLQLGQPKVQESLVEDCQVKLSKAEEKIQQMKEEFQKKE-----AEWELSREELKREAEERLASMFLELREKAESEKLS 534
Cdd:COG1196 482 LLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGlagavAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAA 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 535 IIsrfehressmRHLQDQQAAQILDLERSLMEQQGHLRQLEQELTRDDLLPCSQCGQEPAMAQEEKNGALLREKEDCALQ 614
Cdd:COG1196 562 AI----------EYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAAR 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 615 LLMAQNRFLEERKEIMEKFAKEQDAFLRDAQEKHNHELQLLQQGHQQQLLALRMELETKHRSELTEQLASSESRRQALLE 694
Cdd:COG1196 632 LEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE 711
|
570 580
....*....|....*....|....*....
gi 1039732380 695 THVAELQVKHNAEISALEKRHLSNLDELE 723
Cdd:COG1196 712 AEEERLEEELEEEALEEQLEAEREELLEE 740
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
133-647 |
3.06e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 66.70 E-value: 3.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 133 AQLELTQANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELLREQHAREKEEM-------------ALRSGQEAA 199
Cdd:PTZ00121 1263 AHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAkkkaeeakkkadaAKKKAEEAK 1342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 200 ELKEKLRSEMEKNAQTIETLKQDWESERELCLENLRQELSLKHQSEMEGLQSQFQKELSEQKVELE----------KIFQ 269
Cdd:PTZ00121 1343 KAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADelkkaaaakkKADE 1422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 270 AKHEAEVSLKNLEAQHQAAIKKLQEDLQ--SEHCQYLQDLEQKFREKEKAKELELETLQASYEDLKAQSQEEIRLLWSQL 347
Cdd:PTZ00121 1423 AKKKAEEKKKADEAKKKAEEAKKADEAKkkAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEA 1502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 348 ---ESMKTNREELNGSWDPVLAQASHLEELEHLRSGFAQQQQQERAQHESELEHLRVYFEKKLKDAEKTYQEDLTVFQQR 424
Cdd:PTZ00121 1503 kkaAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK 1582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 425 LQEAREdsLESTEISSSCVLPEETSGREGKEPPDPLDLQLGQPKVQESLVEDCQV---------------KLSKAEEKIQ 489
Cdd:PTZ00121 1583 AEEAKK--AEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVeqlkkkeaeekkkaeELKKAEEENK 1660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 490 QMKEEFQKKEAEWELSREELKREAEERLASMFLELREKAESEKLSIISRFEHRESsmrhlqdQQAAQILDLERSLMEQQG 569
Cdd:PTZ00121 1661 IKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEK-------KKAEELKKAEEENKIKAE 1733
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039732380 570 HLRQLEQELTRDdllpcsqcGQEPAMAQEEKNGALLREKEDCAlqllmAQNRFLEERKEIMEKFAKEQDAFLRDAQEK 647
Cdd:PTZ00121 1734 EAKKEAEEDKKK--------AEEAKKDEEEKKKIAHLKKEEEK-----KAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
152-784 |
3.87e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 66.32 E-value: 3.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 152 ELREMLNGRRAQELALLQSRQQCELELLREQHAREKEEMALRSGQEAAELK----EKLRSEMEKNAQTIETLKQDWESER 227
Cdd:PTZ00121 1186 EVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKkdaeEAKKAEEERNNEEIRKFEEARMAHF 1265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 228 ELCLENLRQELSLKHQsEMEGLQSQFQKELSEQKVELEKIFQAKHEAEVSLKNLEAQHQAAIKKLQEDLQSEHCQYLQDL 307
Cdd:PTZ00121 1266 ARRQAAIKAEEARKAD-ELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKA 1344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 308 EQKFREKEKAKELELETLQASYEDLKAQSQEEIRllwsQLESMKTNREELNGSWDPVLAQASHLEELEHLRSGFAQQQQQ 387
Cdd:PTZ00121 1345 AEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK----KADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKA 1420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 388 ERAQHESelEHLRVYFEKKLKDAEKTYQEDLtvfQQRLQEAREDSLESTEISSSCVLPEETSGREGKEPPDPLDLQLGQP 467
Cdd:PTZ00121 1421 DEAKKKA--EEKKKADEAKKKAEEAKKADEA---KKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEA 1495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 468 KVQESLVEDCQVKLSKAEE--KIQQMKEEFQKKEAEWELSREELKREAEERLASmflELREKAESEKLSIISRFEH--RE 543
Cdd:PTZ00121 1496 KKKADEAKKAAEAKKKADEakKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD---ELKKAEELKKAEEKKKAEEakKA 1572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 544 SSMRHLQDQQAAQILDLERSLMEQQGHLRQLEQELTrddllpcsqcGQEPAMAQEEKNGA-LLREKEDCALQLLMAQNRF 622
Cdd:PTZ00121 1573 EEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMK----------AEEAKKAEEAKIKAeELKKAEEEKKKVEQLKKKE 1642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 623 LEERKEIMEKFAKEQDAFLRDAQEKHNHELQLLQQGHQQQLLALRMELETKHRSELTEQLASSESRRQALLETHVAElQV 702
Cdd:PTZ00121 1643 AEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAE-EL 1721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 703 KHNAEISALEKRHLSNLDELESCYVADVQTIRDEH---QQALELLRAELEEQLQKKESCHREMLTQELENLKRQHAEELQ 779
Cdd:PTZ00121 1722 KKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKkkiAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIK 1801
|
....*
gi 1039732380 780 SVRDS 784
Cdd:PTZ00121 1802 DIFDN 1806
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
855-1485 |
5.21e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 5.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 855 EMQKSQAELAKPQ-ELQASQDQVAQVRDKVFLLNRELEECRAELEQLQQRRERenqegttlicmLRADLELAQGEGKALR 933
Cdd:COG1196 247 ELEELEAELEELEaELAELEAELEELRLELEELELELEEAQAEEYELLAELAR-----------LEQDIARLEERRRELE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 934 DALRRLLDLFGDTLKAAVTLKSRISERAGLLLDHEDAADTSDARLAAAAlgdmwsdEGLLEIDRTLpegaetssvceiss 1013
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE-------EALLEAEAEL-------------- 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1014 hvcesffispentldceqpirrvyQSLSTAVEGLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERL 1093
Cdd:COG1196 375 ------------------------AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEAL 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1094 REESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEksvlwnqketl 1173
Cdd:COG1196 431 AELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEA----------- 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1174 tnEAKEREAGSPVLPAHKDTALQEEVESLTRVQWESRKQSEKDRATLLSQMRVLESELEDQLVQHR--------GCAQLA 1245
Cdd:COG1196 500 --EADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIeylkaakaGRATFL 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1246 EEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAARPRPPGPRDSQCVQLDEEVELLQEKLR 1325
Cdd:COG1196 578 PLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGS 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1326 EKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMGDLLLTTVSRS 1405
Cdd:COG1196 658 AGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREEL 737
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1406 GLDEAgcpMLPQGSSSRGPEAQPDVTERALLQHENEVVHRRNSE--------IDELKSLIENLQENQRQLQkDKAEEIEQ 1477
Cdd:COG1196 738 LEELL---EEEELLEEEALEELPEPPDLEELERELERLEREIEAlgpvnllaIEEYEELEERYDFLSEQRE-DLEEARET 813
|
....*...
gi 1039732380 1478 LHEVIEKL 1485
Cdd:COG1196 814 LEEAIEEI 821
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
118-631 |
9.57e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 9.57e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 118 LELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELLREQHAREKEEMALRSGQE 197
Cdd:COG1196 227 AELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 198 AAELKEKLRSEMEKNAQTIETLKQDWESERELCLENLRQELSLKHQ-SEMEGLQSQFQKELSEQKVELEKIFQAKHEAEV 276
Cdd:COG1196 307 LEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEElEEAEAELAEAEEALLEAEAELAEAEEELEELAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 277 SLKNLEAQHQAAIKKLQEDLQSEHcQYLQDLEQKFREKEKAKELELETLQASYEDLKAQSQEEIRLLWSQLESMKTNREE 356
Cdd:COG1196 387 ELLEALRAAAELAAQLEELEEAEE-ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 357 LNGSWDPVLAQASHLEELEHLRSGFAQQQQQERAQHESELEHLRVYFEKKLKDAEKTYQE--DLTVFQQRLQEAREDSL- 433
Cdd:COG1196 466 AELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAvaVLIGVEAAYEAALEAALa 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 434 --------ESTEISSSCV--LPEETSGREGKEPPDPLDLQLGQPKVQESLVEDCQVKLSKAEEKIQQMKEEFQKKEAEWE 503
Cdd:COG1196 546 aalqnivvEDDEVAAAAIeyLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGR 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 504 LSREELKREAEERLASMFLELREKAESEKLSIISRFEHRESSMRHLQDQQAAQILDLERSLMEQQGHLRQLEQELTRDDL 583
Cdd:COG1196 626 TLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEE 705
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 1039732380 584 lpcsqcgQEPAMAQEEKNGALLREKEDCALQLLMAQNRFLEERKEIME 631
Cdd:COG1196 706 -------ERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEE 746
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
510-1179 |
1.98e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.80 E-value: 1.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 510 KREAEERLASM------------------------------FLELREKAE----SEKLSIISRFEHRESSMRHLQDQQAA 555
Cdd:COG1196 174 KEEAERKLEATeenlerledilgelerqleplerqaekaerYRELKEELKeleaELLLLKLRELEAELEELEAELEELEA 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 556 QILDLERSLMEQQGHLRQLEQELTRDDLlpcsqcgqepamaQEEKNGALLREKEDCALQLLMAQNRFLEERKEIMEKFAK 635
Cdd:COG1196 254 ELEELEAELAELEAELEELRLELEELEL-------------ELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 636 EQDAFLRDAQEKHNHELQLLQQGHQQQLLALRMELETKHRSELTEQLASSESRRQALLETHVAELQVKHNAEISALEKR- 714
Cdd:COG1196 321 LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAa 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 715 HLSNLDELESCYVADVQTIRDEHQQALELLRAELEEQLQKKEScHREMLTQELENLKRQHAEELQSVRDSLRMEMSAQHI 794
Cdd:COG1196 401 QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA-LEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 795 ENGKGPAADLQGAHQQDPAMALHNEGHLlveDGDAVLRSVDAEGLLHQAGPQELGDAHTVEMQKSQAELAKPQELQASQD 874
Cdd:COG1196 480 AELLEELAEAAARLLLLLEAEADYEGFL---EGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDD 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 875 QVAQVRDKvFLLNRELEecRAELEQLQQRRERENQEgttlicmlRADLELAQGEGKALRDALRRLLDLFGDTLKAAVTLK 954
Cdd:COG1196 557 EVAAAAIE-YLKAAKAG--RATFLPLDKIRARAALA--------AALARGAIGAAVDLVASDLREADARYYVLGDTLLGR 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 955 SRISERAgllldheDAADTSDARLAAAALgdmwsdEGLLEIDRTLPEGAETSsvceisshvcesffispentldceqpiR 1034
Cdd:COG1196 626 TLVAARL-------EAALRRAVTLAGRLR------EVTLEGEGGSAGGSLTG---------------------------G 665
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1035 RVYQSLSTAVEGLLEMALDSSKQLEEARQLhrcvEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLL 1114
Cdd:COG1196 666 SRRELLAALLEAEAELEELAERLAEEELEL----EEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEEL 741
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039732380 1115 EGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQ-------AARELLTLKEEKSVLWNQKETLTNEAKE 1179
Cdd:COG1196 742 LEEEELLEEEALEELPEPPDLEELERELERLEREIEAlgpvnllAIEEYEELEERYDFLSEQREDLEEARET 813
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1056-1707 |
2.11e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 2.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1056 KQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESE 1135
Cdd:TIGR02168 288 KELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1136 QQLILELEDLRKQLQQAARELLTLKEEKSVLWNQ-----------KETLTNEAKEREAGSPVLPAHKDTALQEEVESLTR 1204
Cdd:TIGR02168 368 EELESRLEELEEQLETLRSKVAQLELQIASLNNEierlearlerlEDRRERLQQEIEELLKKLEEAELKELQAELEELEE 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1205 VQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEfq 1284
Cdd:TIGR02168 448 ELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVL-- 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1285 QEIQRLEGQLRQAARPRPPGPRDSQCVQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQR 1364
Cdd:TIGR02168 526 SELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAK 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1365 QMVQLQEELEKQKKSM-------EELKEK-EILKQENMGDLLLT----TVSRSG-------------------LDEAGCP 1413
Cdd:TIGR02168 606 DLVKFDPKLRKALSYLlggvlvvDDLDNAlELAKKLRPGYRIVTldgdLVRPGGvitggsaktnssilerrreIEELEEK 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1414 MLPQGSSSRGPEAQPDVTERALLQHENEV-------------VHRRNSEIDELKSLIENLQENQRQLQK---DKAEEIEQ 1477
Cdd:TIGR02168 686 IEELEEKIAELEKALAELRKELEELEEELeqlrkeleelsrqISALRKDLARLEAEVEQLEERIAQLSKeltELEAEIEE 765
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1478 LHEVIEKLQSELSLMGPKVHEVSDPQAG-------------SLHSELACLRGEGLGGQALRSELQAAQAAKEVFGQLLAD 1544
Cdd:TIGR02168 766 LEERLEEAEEELAEAEAEIEELEAQIEQlkeelkalrealdELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEE 845
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1545 QAHGHSQALEALQQRLQDAEEVAARHLAELEHCVALREAEVEAMA---SQIQEFAATLKAKEAIIEQRDLEIDAVNKWKV 1621
Cdd:TIGR02168 846 QIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAllrSELEELSEELRELESKRSELRRELEELREKLA 925
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1622 SHSLELEAILLALAHFRHALEQQTCATPDEPPELRQLRVQCARlshqlqvlyrpflKCRMQLDQHQPHVASIGCANPCAD 1701
Cdd:TIGR02168 926 QLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEE-------------EARRRLKRLENKIKELGPVNLAAI 992
|
....*.
gi 1039732380 1702 DELEQE 1707
Cdd:TIGR02168 993 EEYEEL 998
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2213-2567 |
8.61e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 8.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2213 RRQVELLAYKVEQEKCIANELQKTLSKEQETASDVRKRLVVEQNAVQDLKSELHACKQENTSLLESLDKVQQEVLRLRyg 2292
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLE-- 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2293 hvtwsycgtssasAGRAVLDGKEKELKVVLEELESERGKGQALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNN 2372
Cdd:COG1196 302 -------------QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2373 QLCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQEACARQ 2452
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2453 ETQVQHALLRKLKAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQErcVELRREKEVSGNLRSAVDALRTHKQELGC-CL 2531
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL--LLLEAEADYEGFLEGVKAALLLAGLRGLAgAV 526
|
330 340 350
....*....|....*....|....*....|....*.
gi 1039732380 2532 QREREKAAWLQAELEQLSARVKEQEARKDARRMERR 2567
Cdd:COG1196 527 AVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAA 562
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1037-1609 |
9.36e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.61 E-value: 9.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1037 YQSLSTAVEGL-LEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRlalELHTAKGLLE 1115
Cdd:TIGR02168 215 YKELKAELRELeLALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEE---EIEELQKELY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1116 GFKVEKVDLQEALGKKEESEQQLI-------LELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAGSPVLP 1188
Cdd:TIGR02168 292 ALANEISRLEQQKQILRERLANLErqleeleAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1189 AHKDtALQEEVESLTRvqweSRKQSEKDRATLLSQMRVLESELEdQLVQHRgcAQLAEEVATLKQQLAALDKH-LRSQRQ 1267
Cdd:TIGR02168 372 SRLE-ELEEQLETLRS----KVAQLELQIASLNNEIERLEARLE-RLEDRR--ERLQQEIEELLKKLEEAELKeLQAELE 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1268 FMDDQAAEREHEREEFQQEIQRLEGQLRQAARPRPPGPRDSQcvQLDEEVELLqEKLREKLDGFNELVI-----KKDFAD 1342
Cdd:TIGR02168 444 ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELA--QLQARLDSL-ERLQENLEGFSEGVKallknQSGLSG 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1343 -----QQLLIQEEEIKRLEETNASIQRQMVqLQEELEKQKKSMEELKEKEILKqenMGDLLLTTVSRSGLDEAGCPMLPQ 1417
Cdd:TIGR02168 521 ilgvlSELISVDEGYEAAIEAALGGRLQAV-VVENLNAAKKAIAFLKQNELGR---VTFLPLDSIKGTEIQGNDREILKN 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1418 GSSSRG---------PEAQPDVT-----------------ERALLQHEN-------EVVHR-----------------RN 1447
Cdd:TIGR02168 597 IEGFLGvakdlvkfdPKLRKALSyllggvlvvddldnaleLAKKLRPGYrivtldgDLVRPggvitggsaktnssileRR 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1448 SEIDELKSLIENLQENQRQLQK---DKAEEIEQLHEVIEKLQSELSLMGPKVHEvsdpqagsLHSELACLRGEGLGGQAL 1524
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKalaELRKELEELEEELEQLRKELEELSRQISA--------LRKDLARLEAEVEQLEER 748
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1525 RSELQAAQAAKEVFGQLLADQAHGHSQALEALQQRLQDAEEVAARHLAELEhcvALREA--EVEAMASQIQEFAATLKAK 1602
Cdd:TIGR02168 749 IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK---ALREAldELRAELTLLNEEAANLRER 825
|
....*..
gi 1039732380 1603 EAIIEQR 1609
Cdd:TIGR02168 826 LESLERR 832
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
345-1163 |
1.33e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 1.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 345 SQLESMKTN-------REELNGSWDPVLAQASHLE-------ELEHLRSGFAQQQQQERAQHESELEHLrvyfEKKLKDA 410
Cdd:TIGR02168 179 RKLERTRENldrlediLNELERQLKSLERQAEKAErykelkaELRELELALLVLRLEELREELEELQEE----LKEAEEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 411 EKTYQEDLTVFQQRLQEARedsLESTEISSSCVLPEETSGREGKEPPDpLDLQLGQPKVQESLVEDCQVKLSKAEEKIQQ 490
Cdd:TIGR02168 255 LEELTAELQELEEKLEELR---LEVSELEEEIEELQKELYALANEISR-LEQQKQILRERLANLERQLEELEAQLEELES 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 491 MKEEFQKKEAEWELSREELKREAEErLASMFLELREKAESEKLSIISRFEHRES------SMRHLQDQQAAQILDLERSL 564
Cdd:TIGR02168 331 KLDELAEELAELEEKLEELKEELES-LEAELEELEAELEELESRLEELEEQLETlrskvaQLELQIASLNNEIERLEARL 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 565 MEQQGHLRQLEQELtrddllpcSQCGQEPAMAQEEKNGALLREKEDCALQLLMAQNRFLEERKEIMEKFAKEQDAfLRDA 644
Cdd:TIGR02168 410 ERLEDRRERLQQEI--------EELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQA-LDAA 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 645 QEKHNHelqllqqGHQQQLLALRMELETKHRSELTEQLASSESRRQALLETHVAELQVKHNAEIS---ALEKRHLSNLDE 721
Cdd:TIGR02168 481 ERELAQ-------LQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAieaALGGRLQAVVVE 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 722 LESCYVADVQTIRdEHQQALELLRAELEEQLQKKESCHREMLTQelENLKRQHAEELQSVRDSLRMEMSAqhIENGKGPA 801
Cdd:TIGR02168 554 NLNAAKKAIAFLK-QNELGRVTFLPLDSIKGTEIQGNDREILKN--IEGFLGVAKDLVKFDPKLRKALSY--LLGGVLVV 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 802 ADLQGAHQQdpAMALHNEGHLLVEDGDAVLRSvdaeGLLhqAGPQELGDAHTVEMQKSQAELAkpQELQASQDQVAQVRD 881
Cdd:TIGR02168 629 DDLDNALEL--AKKLRPGYRIVTLDGDLVRPG----GVI--TGGSAKTNSSILERRREIEELE--EKIEELEEKIAELEK 698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 882 KVFLLNRELEECRAELEQLQQRRERENQEgttlICMLRADLELAQGEGKALRDALRRLLDLFGDTLKAAVTLKSRISERA 961
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSRQ----ISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAE 774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 962 GLLLDHEDAADTSDARLAAAAlgdmwsdEGLLEIDRTLPEGAETSSVCEISSHVCESFFISPENTL-DCEQPIRRVYQSL 1040
Cdd:TIGR02168 775 EELAEAEAEIEELEAQIEQLK-------EELKALREALDELRAELTLLNEEAANLRERLESLERRIaATERRLEDLEEQI 847
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1041 STAVEGLLEMAL----------DSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTA 1110
Cdd:TIGR02168 848 EELSEDIESLAAeieeleelieELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQL 927
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|...
gi 1039732380 1111 KGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEK 1163
Cdd:TIGR02168 928 ELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1068-1397 |
1.55e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.85 E-value: 1.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1068 VEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQlilELEDLRK 1147
Cdd:TIGR02169 668 FSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKE---RLEELEE 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1148 QLQQAARELLTLKEEKSVLWNQKETLTNE-AKEREAgspvLPAHKDTALQEEVESLTRvqwESRKQsEKDRATLLSQMRV 1226
Cdd:TIGR02169 745 DLSSLEQEIENVKSELKELEARIEELEEDlHKLEEA----LNDLEARLSHSRIPEIQA---ELSKL-EEEVSRIEARLRE 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1227 LESELEDQlvqHRGCAQLAEEVATLKQQLAALDkhlrSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAarprppgpr 1306
Cdd:TIGR02169 817 IEQKLNRL---TLEKEYLEKEIQELQEQRIDLK----EQIKSIEKEIENLNGKKEELEEELEELEAALRDL--------- 880
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1307 DSQCVQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEkQKKSMEELKEK 1386
Cdd:TIGR02169 881 ESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPE-EELSLEDVQAE 959
|
330
....*....|.
gi 1039732380 1387 EILKQENMGDL 1397
Cdd:TIGR02169 960 LQRVEEEIRAL 970
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
142-529 |
2.28e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 60.37 E-value: 2.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 142 LQKEKETALTELREMLNGRRAQELALLQSRQQCELELLREQHAREKEEMALRSGQEAAELKEKLRSEMEKNAQTIETLKQ 221
Cdd:pfam02463 634 LTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELK 713
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 222 DWESERELCLENLRQELSLKHQSEMEGLQSQF-QKELSEQKVELEKIFQAKHEAEVSLKNLEAQHQAA--IKKLQEDLQS 298
Cdd:pfam02463 714 KLKLEAEELLADRVQEAQDKINEELKLLKQKIdEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREktEKLKVEEEKE 793
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 299 EHCQYLQDLEQKFREKEKAKELELETLQASYEDLKAQSQEEIRLLwSQLESMKTNREELNgswdpvlaqashlEELEHLR 378
Cdd:pfam02463 794 EKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEEL-ALELKEEQKLEKLA-------------EEELERL 859
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 379 SGFAQQQQQERAQHESELEHLRVYFEKKLKDAEKTYQEDLTVFQQRLQEAREDSLESTEISSSCVLPEETSGREGKEPPD 458
Cdd:pfam02463 860 EEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEE 939
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039732380 459 PLDLQLGQPKVQESLVEDCQVKLSKAEEKIQQ-------MKEEFQKKEAEWELSREELKREAEERLASMFLELREKAE 529
Cdd:pfam02463 940 LLLEEADEKEKEENNKEEEEERNKRLLLAKEElgkvnlmAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQ 1017
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
667-1488 |
2.82e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.07 E-value: 2.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 667 RMELETKHRSELTEQLASSESRRQALlETHVAELQVK---HNAEISALEKRhlsnLDELESCYVADVQTIRD-EHQQALE 742
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEEL-TAELQELEEKleeLRLEVSELEEE----IEELQKELYALANEISRlEQQKQIL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 743 LLRAELEEQLQKKESCHREMLTQELENLKRQHA------EELQSVRDSLRMEMSAqhiENGKGPAADLQGAHQQDPAMAL 816
Cdd:TIGR02168 308 RERLANLERQLEELEAQLEELESKLDELAEELAeleeklEELKEELESLEAELEE---LEAELEELESRLEELEEQLETL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 817 HNEGHLLVEDGDAV-LRSVDAEGLLHQAgpqELGDAHTVEMQKSQAELAKPQELQASQDQVAQVRDKVFLLNRELEECRA 895
Cdd:TIGR02168 385 RSKVAQLELQIASLnNEIERLEARLERL---EDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEE 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 896 ELEQLQQRRERENQEgttlICMLRADLELAQGEGKALRDALRRLLDlFGDTLKAAVTLKSRISERAGLLLDHEDAADTSD 975
Cdd:TIGR02168 462 ALEELREELEEAEQA----LDAAERELAQLQARLDSLERLQENLEG-FSEGVKALLKNQSGLSGILGVLSELISVDEGYE 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 976 ARLAAAALGDMWS------DEGLLEIDRTLPEGAETSSVCEISSHVCESFFISPENTLDCEQPIRRVYQSL---STAVEG 1046
Cdd:TIGR02168 537 AAIEAALGGRLQAvvvenlNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLvkfDPKLRK 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1047 LLEMALDSSkqleearqlhRCVERefrhrneeMAQAMQKQQELLERLREESAAKDRLalelhTAKGLLEG---------- 1116
Cdd:TIGR02168 617 ALSYLLGGV----------LVVDD--------LDNALELAKKLRPGYRIVTLDGDLV-----RPGGVITGgsaktnssil 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1117 -FKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLwNQKETLTNEAKEREAGSPVLPAHKDTAL 1195
Cdd:TIGR02168 674 eRRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL-SRQISALRKDLARLEAEVEQLEERIAQL 752
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1196 QEEVESLTRVQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAE 1275
Cdd:TIGR02168 753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERR 832
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1276 REHEreefQQEIQRLEGQLRQAArprppgprdSQCVQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRL 1355
Cdd:TIGR02168 833 IAAT----ERRLEDLEEQIEELS---------EDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEEL 899
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1356 EETNASIQRQMVQLQEELEKQKKSMEELKEKEIlKQENMGDLLLTTVSRSGLDEAGcpmlPQGSSSRGPEAQPDVTERAL 1435
Cdd:TIGR02168 900 SEELRELESKRSELRRELEELREKLAQLELRLE-GLEVRIDNLQERLSEEYSLTLE----EAEALENKIEDDEEEARRRL 974
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*.
gi 1039732380 1436 LQHENEVVHRRN---SEIDELKSLIENLQENQRQlQKDKAEEIEQLHEVIEKLQSE 1488
Cdd:TIGR02168 975 KRLENKIKELGPvnlAAIEEYEELKERYDFLTAQ-KEDLTEAKETLEEAIEEIDRE 1029
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
860-1489 |
3.86e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.30 E-value: 3.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 860 QAELAKPQELQASQDQVAQVRDKVFLLNRELEECRAELEQLQQRRERENQEGTTLIC-MLRADLELAQGEGKALRDALRR 938
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKkLEEAELKELQAELEELEEELEE 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 939 LLDLFGDTLKAAVTLKSRISERAGLLLDHEDAADTSDARLAAAalgdmwsdEGLLEIDRTLPEG--AETSSVCEISSHV- 1015
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL--------ERLQENLEGFSEGvkALLKNQSGLSGILg 523
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1016 CESFFISPENTLDceqpirrvyQSLSTAVEGLLEMALDSSKQ--------LEEARQ-------LHRCVEREFRHRNEEMA 1080
Cdd:TIGR02168 524 VLSELISVDEGYE---------AAIEAALGGRLQAVVVENLNaakkaiafLKQNELgrvtflpLDSIKGTEIQGNDREIL 594
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1081 QAMQKQQELLERLrEESAAKDRLALElhtakGLLEGFKVEKvDLQEALgkkeeseqqlileleDLRKQLQQAAR------ 1154
Cdd:TIGR02168 595 KNIEGFLGVAKDL-VKFDPKLRKALS-----YLLGGVLVVD-DLDNAL---------------ELAKKLRPGYRivtldg 652
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1155 ELLT---------LKEEKSVLWNQKETLTNEAKEREAGSpvlpahKDTALQEEVESLtRVQWESRKQSEKDRATLLSQMR 1225
Cdd:TIGR02168 653 DLVRpggvitggsAKTNSSILERRREIEELEEKIEELEE------KIAELEKALAEL-RKELEELEEELEQLRKELEELS 725
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1226 VLESELEDQLVQHRG-CAQLAEEVATLKQQLAALDKhlrsQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAARprppg 1304
Cdd:TIGR02168 726 RQISALRKDLARLEAeVEQLEERIAQLSKELTELEA----EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE----- 796
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1305 prdsQCVQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELK 1384
Cdd:TIGR02168 797 ----ELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELE 872
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1385 EK-EILKQENMGDLLLTTVSRSGLDEAgcpmlpqgSSSRGPEAQPDVTERALLQHENEVVHRRNSEIDELKSLIENLQEN 1463
Cdd:TIGR02168 873 SElEALLNERASLEEALALLRSELEEL--------SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQER 944
|
650 660
....*....|....*....|....*.
gi 1039732380 1464 QRQLQKDKAEEIEQLHEVIEKLQSEL 1489
Cdd:TIGR02168 945 LSEEYSLTLEEAEALENKIEDDEEEA 970
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1130-1621 |
4.99e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.18 E-value: 4.99e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1130 KKEESEQQL------ILELEDLRKQLqqaARELLTLKEEKSVLwNQKETLTNEAKEREAgspvlpahkdtalqeeveSLT 1203
Cdd:COG1196 173 RKEEAERKLeateenLERLEDILGEL---ERQLEPLERQAEKA-ERYRELKEELKELEA------------------ELL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1204 RVQWESRkqsEKDRATLLSQMRVLESELEDQLVQHRgcaQLAEEVATLKQQLAALDKHLRSQRQfmddqaaerehEREEF 1283
Cdd:COG1196 231 LLKLREL---EAELEELEAELEELEAELEELEAELA---ELEAELEELRLELEELELELEEAQA-----------EEYEL 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1284 QQEIQRLEGQLRQAARPRppGPRDSQCVQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQ 1363
Cdd:COG1196 294 LAELARLEQDIARLEERR--RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1364 RQMVQLQEELEKQKKSMEELKEKEILKQENMGDLLLTTVSRSGLDEAgcpMLPQGSSSRGPEAQPDVTERALLQHENEVV 1443
Cdd:COG1196 372 AELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER---LEEELEELEEALAELEEEEEEEEEALEEAA 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1444 HRRNSEIDELKSLIENLQENQRQLQKDKAEEIEQLHEVIEKLQSELSLMGPKVHEVSDPQAGSLHSELACLRG-EGLGGQ 1522
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGlAGAVAV 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1523 ALRSELQAAQAAKEVFGQLLADQAHGHSQALEALQQRLQDA----------EEVAARHLAELEHCVALREAEVEAMASQI 1592
Cdd:COG1196 529 LIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAkagratflplDKIRARAALAAALARGAIGAAVDLVASDL 608
|
490 500
....*....|....*....|....*....
gi 1039732380 1593 QEFAATLKAKEAIIEQRDLEIDAVNKWKV 1621
Cdd:COG1196 609 READARYYVLGDTLLGRTLVAARLEAALR 637
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2083-2609 |
8.78e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 8.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2083 QALSEVTTDKGEKESLETHLTWSEELLRAIQEVFAREQEKAELQprpygsnLGDYNSLVQRLEKVIQEQgDPQKVQDHLC 2162
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEA-------QAEEYELLAELARLEQDI-ARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2163 LSDRSSLLAEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELLAYKVEQEKcIANELQKTLSKEQE 2242
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE-ELEELAEELLEALR 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2243 TASDVRKRLVVEQNAVQDLKSELHACKQENTSLLESLDKVQQEVLRLRyghvtwsycgtsSASAGRAVLDGKEKELKVVL 2322
Cdd:COG1196 394 AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE------------EALEEAAEEEAELEEEEEAL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2323 EELESERGKGQALQAQQEEQQLRYLQREGQSSRALEELKLSLE-------KQLAQNNQLCVALKHERAAKDNLQKELQIE 2395
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEgflegvkAALLLAGLRGLAGAVAVLIGVEAAYEAALE 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2396 ASRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQEACARQETQVQHALLRKLKAEKTRALELE 2475
Cdd:COG1196 542 AALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDT 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2476 AMLEKVQKQAAHTQQQLEAQAQERCVELRREKEVSGNLRSAVDALRTHKQELGCCLQREREKAAWLQAELEQLSARVKEQ 2555
Cdd:COG1196 622 LLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLA 701
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039732380 2556 EARKDARRMERRSSRADLDKRKWQRDKETLRELEIQRQRD------------------------EHKIEQLQRLVREL 2609
Cdd:COG1196 702 EEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELleeeelleeealeelpeppdleelERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
156-430 |
2.12e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 2.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 156 MLNGRRAQELALLQSRQQcELELLREQhaREKEEMALRSGQEAAELKEKLRSEMEKNAQTIETLKQDWE---SERELCLE 232
Cdd:TIGR02168 660 VITGGSAKTNSSILERRR-EIEELEEK--IEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSrqiSALRKDLA 736
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 233 NLRQ--ELSLKHQSEMEGLQSQFQKELSEQKVELEKIFQAKHEAEVSLKNLEA---QHQAAIKKLQEDLQSEHCQY--LQ 305
Cdd:TIGR02168 737 RLEAevEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAqieQLKEELKALREALDELRAELtlLN 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 306 DLEQKFREKEKAKELELETLQASYEDLKAQS---QEEIRLLWSQLESMKTNREELNGSWDPVLAQASHLEELEHLRSGFA 382
Cdd:TIGR02168 817 EEAANLRERLESLERRIAATERRLEDLEEQIeelSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEL 896
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1039732380 383 QQQQQERAQHESELEHLRVYFEkKLKDAEKTYQEDLTVFQQRLQEARE 430
Cdd:TIGR02168 897 EELSEELRELESKRSELRRELE-ELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2354-2614 |
1.16e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 1.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2354 SRALEELKLSLEKQLAQNNQLCVALKHERAAKDNLQKE---LQIEASRCEALLAQEKGQLSELQKSLEAERSR----SLE 2426
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEEleqLRKELEELSRQISALRKDLARLEAEVEQLEERiaqlSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2427 LSEALQHERLLTEQLSRNSQEACARQETQVQhaLLRKLKAEKTRALELEAMLEKVQKQAAHTQqqleaqaqercVELRRE 2506
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEE--LEAQIEQLKEELKALREALDELRAELTLLN-----------EEAANL 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2507 KEVSGNLRSAVDALRTHKQELGCCLQREREKAAWLQAELEQLSARVKEQEARKDARRMERRSSRADLDKRKWQRDK--ET 2584
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEElsEE 902
|
250 260 270
....*....|....*....|....*....|
gi 1039732380 2585 LRELEIQRQRDEHKIEQLQRLVRELRWKEE 2614
Cdd:TIGR02168 903 LRELESKRSELRRELEELREKLAQLELRLE 932
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
145-519 |
3.49e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 3.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 145 EKETALTELREMlnGRRAQELALLQSRQQCELELLREQHAREKEEMALRSGQEAAELKEKLRSEMEKNAQTIETLKQDWE 224
Cdd:TIGR02169 171 KKEKALEELEEV--EENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 225 SEREL---------------CLENLRQELSLKHQSEMEGLQSQFQKELSEQKVELEKIFQAKHEAEVSLKNLEAQHQAAI 289
Cdd:TIGR02169 249 LEEELeklteeiselekrleEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 290 KKLQEdLQSEHCQYLQDLEQKFREKEKAKElELETLQASYEDLKAQSQE---EIRLLWSQLESMKTNREELNGSWDPVLA 366
Cdd:TIGR02169 329 AEIDK-LLAEIEELEREIEEERKRRDKLTE-EYAELKEELEDLRAELEEvdkEFAETRDELKDYREKLEKLKREINELKR 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 367 QASHLEELEHLRSGfaqqqqqERAQHESELEHLRvyfekklkdaektyqEDLTVFQQRLQEAREdslestEIssscvlpe 446
Cdd:TIGR02169 407 ELDRLQEELQRLSE-------ELADLNAAIAGIE---------------AKINELEEEKEDKAL------EI-------- 450
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039732380 447 etsgregkeppdpldlqlgqpKVQESLVEDCQVKLSKAEEKIQQMKEEFQKKEAEWELSREELKREAEERLAS 519
Cdd:TIGR02169 451 ---------------------KKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARAS 502
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
117-577 |
3.70e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 52.92 E-value: 3.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 117 SLELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQeLALLQSRQQCELELLREQHAREKEEMALRSGQ 196
Cdd:pfam12128 252 TLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQ-WKEKRDELNGELSAADAAVAKDRSELEALEDQ 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 197 EAAELKEKLrsemEKNAQTIETLKQdWESErelcLENLRQELSL---KHQSEMEGLQSQFQKELSEQKVELEKIFQAKHE 273
Cdd:pfam12128 331 HGAFLDADI----ETAAADQEQLPS-WQSE----LENLEERLKAltgKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAK 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 274 AEVSLKNLEAQHQAAIKKLQEDLQSEHCQYLQDL-EQKFREKEKAKELELETLQASY-EDLK---AQSQEEIRLLWSQLE 348
Cdd:pfam12128 402 IREARDRQLAVAEDDLQALESELREQLEAGKLEFnEEEYRLKSRLGELKLRLNQATAtPELLlqlENFDERIERAREEQE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 349 SMKTNREELNGSwdpvLAQASHLEELEHLRSGFAQQQQQERAQHESELEH--------LRVYFEK----------KLKDA 410
Cdd:pfam12128 482 AANAEVERLQSE----LRQARKRRDQASEALRQASRRLEERQSALDELELqlfpqagtLLHFLRKeapdweqsigKVISP 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 411 EKTYQEDLTVFQQRLQEAREDS-------LESTEISSSCVLPEETSGREGKeppdpldlqlgqpkvQESLVEDCQVKLSK 483
Cdd:pfam12128 558 ELLHRTDLDPEVWDGSVGGELNlygvkldLKRIDVPEWAASEEELRERLDK---------------AEEALQSAREKQAA 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 484 AEEKIQQMKEEFQKKEAEWELSREELKrEAEERLASMFLELREKAESEKLSIISRFEHRESSMRHLQDQQAAQILDLERS 563
Cdd:pfam12128 623 AEEQLVQANGELEKASREETFARTALK-NARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAW 701
|
490
....*....|....
gi 1039732380 564 LMEQQGHLRQLEQE 577
Cdd:pfam12128 702 LEEQKEQKREARTE 715
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
119-357 |
9.95e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 51.28 E-value: 9.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 119 ELEALRLSLNNMHTAQLELTQANLQKEKETALTEL---REMLNGRRAQelallqsrqqcELELLREQHAREKEEMalRSG 195
Cdd:pfam17380 349 ELERIRQEERKRELERIRQEEIAMEISRMRELERLqmeRQQKNERVRQ-----------ELEAARKVKILEEERQ--RKI 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 196 QEAAELKEKLRSEMEkNAQTIETLKQDWESERElcLENLRQElSLKHQSEMEGLQSQfQKELSEQKVELEKIFQAKHEAE 275
Cdd:pfam17380 416 QQQKVEMEQIRAEQE-EARQREVRRLEEERARE--MERVRLE-EQERQQQVERLRQQ-EEERKRKKLELEKEKRDRKRAE 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 276 -----VSLKNLEAQHQAAI------KKLQEDLQSEHCQYLQDLEQKFREKEKAKELELETLQASYEDLKAQSQEEirllw 344
Cdd:pfam17380 491 eqrrkILEKELEERKQAMIeeerkrKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEER----- 565
|
250
....*....|...
gi 1039732380 345 SQLESMKTNREEL 357
Cdd:pfam17380 566 SRLEAMEREREMM 578
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1084-1382 |
1.03e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 1.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1084 QKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLIL-ELEDLRKQLQQAARELLTLKEE 1162
Cdd:TIGR02169 173 EKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLkEKEALERQKEAIERQLASLEEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1163 KSVLWNQKETLTNEAKEREA------------GSPVLPAHKDT--ALQEEVESLTRVQWES----------RKQSEKDRA 1218
Cdd:TIGR02169 253 LEKLTEEISELEKRLEEIEQlleelnkkikdlGEEEQLRVKEKigELEAEIASLERSIAEKereledaeerLAKLEAEID 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1219 TLLSQMRVLESELEDQLVQHRGC----AQLAEEVATLKQQLAALDKHLRSQRQFMDD----------QAAEREHEREEFQ 1284
Cdd:TIGR02169 333 KLLAEIEELEREIEEERKRRDKLteeyAELKEELEDLRAELEEVDKEFAETRDELKDyrekleklkrEINELKRELDRLQ 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1285 QEIQRLEGQLRQAaRPRPPGPRDSQcVQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQR 1364
Cdd:TIGR02169 413 EELQRLSEELADL-NAAIAGIEAKI-NELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490
|
330
....*....|....*...
gi 1039732380 1365 QMvqlqEELEKQKKSMEE 1382
Cdd:TIGR02169 491 EL----AEAEAQARASEE 504
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
485-1381 |
1.15e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.51 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 485 EEKIQQMKEEFQKKEAEWELSREELKREAEERLASMFLELREKAESEKLSIISRFEHRESSMRHLQDQQAAQILDLERSL 564
Cdd:pfam02463 194 ELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKE 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 565 MEQQghLRQLEQELTRDDLLPCSQCGQEPAMAQEEKNGALLREKedcaLQLLMAQNRFLEERKEimekfaKEQDAFLRDA 644
Cdd:pfam02463 274 NKEE--EKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEK----LKESEKEKKKAEKELK------KEKEEIEELE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 645 QEKHNHELQLLQQGHQQQLLALRMELETKHRSELTEQLASSESRRQALLETHVAELQVKHNAEISALEKRHLSNLDELES 724
Cdd:pfam02463 342 KELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLL 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 725 CYVADVQTIRDEHQQALELLRAELEEQLQKKEschremLTQELENLKRQHAEELQSVRdslrmemsAQHIENGKGPAADL 804
Cdd:pfam02463 422 KEEKKEELEILEEEEESIELKQGKLTEEKEEL------EKQELKLLKDELELKKSEDL--------LKETQLVKLQEQLE 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 805 QGAHQQDPAMALHNEGHLLVEDGDAVLRSVDAEGLLHQAGPQELGDAHTVemqksqAELAKPQELQASQDQVAQVRDKVF 884
Cdd:pfam02463 488 LLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVA------VENYKVAISTAVIVEVSATADEVE 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 885 llnrELEECRAELEQLQQRRERENQEGTTLICMLRADLELAQGEGKALRDALRRLLDLFGDTLKAAVTLKSRISERAGLL 964
Cdd:pfam02463 562 ----ERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKL 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 965 LDHEDAADTSDARLAAAALGDMWSDEGLLEIDRTLPEGAETSSVCEISSHVCESFFISPENTLDCEQPIRRVYQSLSTAV 1044
Cdd:pfam02463 638 KESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKL 717
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1045 EGLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALEL-HTAKGLLEGFKVEKVD 1123
Cdd:pfam02463 718 EAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEReKTEKLKVEEEKEEKLK 797
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1124 LQEALGKKEESEQQLILEledlrkQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAgspvlpahKDTALQEEVESLT 1203
Cdd:pfam02463 798 AQEEELRALEEELKEEAE------LLEEEQLLIEQEEKIKEEELEELALELKEEQKLEK--------LAEEELERLEEEI 863
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1204 RVQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRgcaQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEF 1283
Cdd:pfam02463 864 TKEELLQELLLKEEELEEQKLKDELESKEEKEKEEK---KELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEEL 940
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1284 QQEIQRLEGQLRQAArprppgprdsqcvqLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQ 1363
Cdd:pfam02463 941 LLEEADEKEKEENNK--------------EEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKK 1006
|
890
....*....|....*...
gi 1039732380 1364 RQMVQLQEELEKQKKSME 1381
Cdd:pfam02463 1007 LIRAIIEETCQRLKEFLE 1024
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1130-1564 |
1.37e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.21 E-value: 1.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1130 KKEESEQQLILELEDLrKQLQQAARELltlkeEKsvlwnQKETLTNEAKEreagspvlpAHKDTALQEEVESLTRVQWES 1209
Cdd:TIGR02168 173 RRKETERKLERTRENL-DRLEDILNEL-----ER-----QLKSLERQAEK---------AERYKELKAELRELELALLVL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1210 RKQSEKDRatlLSQMRVLESELEDQlvqhrgCAQLAEEVATLKQQLAALdkhlRSQRQFMDDQAAEREHEREEFQQEIQR 1289
Cdd:TIGR02168 233 RLEELREE---LEELQEELKEAEEE------LEELTAELQELEEKLEEL----RLEVSELEEEIEELQKELYALANEISR 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1290 LEGQLRqaarprppgprdsqcvqldeeveLLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQL 1369
Cdd:TIGR02168 300 LEQQKQ-----------------------ILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESL 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1370 QEELEKQKKSMEELKEKEILKQENMGDLllttvsrsgldeagcpmlpqgsssrgpeaqpdvtERALLQHENEvVHRRNSE 1449
Cdd:TIGR02168 357 EAELEELEAELEELESRLEELEEQLETL----------------------------------RSKVAQLELQ-IASLNNE 401
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1450 IDELKSLIENLQENQRQLQKDKAEEIEQLHEVIEKLQSElslmgpkvhevsdpQAGSLHSELACLRGEGLGGQALRSELQ 1529
Cdd:TIGR02168 402 IERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQA--------------ELEELEEELEELQEELERLEEALEELR 467
|
410 420 430
....*....|....*....|....*....|....*
gi 1039732380 1530 AAQAAKEVFGQLLADQAHGHSQALEALQQRLQDAE 1564
Cdd:TIGR02168 468 EELEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
134-501 |
1.56e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.83 E-value: 1.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 134 QLELTQANLQKeKETALTELREMLNGRRAQ-ELAllqsrqqcelELLREQHAREKE---EMALRSGQEAAELKEKLRSEM 209
Cdd:TIGR02168 180 KLERTRENLDR-LEDILNELERQLKSLERQaEKA----------ERYKELKAELRElelALLVLRLEELREELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 210 EKNAQTIETLkQDWESERELCLENLRQElslkhQSEMEGLQSQFQKELSEQKVELEKIFQAKHEAEVSLKNLEAQHQAAI 289
Cdd:TIGR02168 249 KEAEEELEEL-TAELQELEEKLEELRLE-----VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 290 KKLQEDLQSEHCQylqdleqkfREKEKAKELELETLQASYEDLKAQSQEEIRllwsQLESMKTNREELNgswdpvlaqas 369
Cdd:TIGR02168 323 AQLEELESKLDEL---------AEELAELEEKLEELKEELESLEAELEELEA----ELEELESRLEELE----------- 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 370 hlEELEHLRSGFAqQQQQERAQHESELEHLrvyfEKKLKDAEKTYQEdltvfQQRLQEAREDSLESTEIssscvlpEETS 449
Cdd:TIGR02168 379 --EQLETLRSKVA-QLELQIASLNNEIERL----EARLERLEDRRER-----LQQEIEELLKKLEEAEL-------KELQ 439
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 1039732380 450 GREGKEPPDPLDLQLGQPKVQESLvEDCQVKLSKAEEKIQQMKEEFQKKEAE 501
Cdd:TIGR02168 440 AELEELEEELEELQEELERLEEAL-EELREELEEAEQALDAAERELAQLQAR 490
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2377-2610 |
2.20e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 2.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2377 ALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQEacarqetqv 2456
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE--------- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2457 QHALLRKLKAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQERCVELRREKEVSGNLRSAVDALRTHKQELgcclQRERE 2536
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAEL----AALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039732380 2537 KAAWLQAELEQLSARVKEQEARKDARRMERRSSRADLDKRKwQRDKETLRELEIQRQRDEHKIEQLQRLVRELR 2610
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKEL-AELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
144-542 |
2.39e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.06 E-value: 2.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 144 KEKETALTELREMLNG--RRAQELALLQSR-QQCELELLREQHAREKEEMALRSGQEAAELKEKLRSEMEKNAQTIETLK 220
Cdd:PRK03918 210 NEISSELPELREELEKleKEVKELEELKEEiEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELK 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 221 QDWESERELC---------LENLRQELSlKHQSEMEGLQSQFqKELSEQKVELEKIFQAKHEAEVSLKNLEAQHqaaikK 291
Cdd:PRK03918 290 EKAEEYIKLSefyeeyldeLREIEKRLS-RLEEEINGIEERI-KELEEKEERLEELKKKLKELEKRLEELEERH-----E 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 292 LQEDLqsehcqyLQDLEQKFREKEKAKELELETLQASYEDL---KAQSQEEIRLLWSQLESMKTNREELNgswdpvlaqa 368
Cdd:PRK03918 363 LYEEA-------KAKKEELERLKKRLTGLTPEKLEKELEELekaKEEIEEEISKITARIGELKKEIKELK---------- 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 369 shlEELEHLRSGFAQQQQQERAQHESELEHLRVYFEKKLKDAEKTYQEDLTVFQQRLQEAREdsLESTEISSSCVLPEET 448
Cdd:PRK03918 426 ---KAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRE--LEKVLKKESELIKLKE 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 449 SGREGKEppdpldlqlgqpkVQESLVEDCQVKLSKAEEKIQQMKEEFQKKEAEWELSREELKREAE--ERLASMFLELRE 526
Cdd:PRK03918 501 LAEQLKE-------------LEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEElkKKLAELEKKLDE 567
|
410
....*....|....*.
gi 1039732380 527 kAESEKLSIISRFEHR 542
Cdd:PRK03918 568 -LEEELAELLKELEEL 582
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
116-798 |
2.73e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.97 E-value: 2.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 116 HSLELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELLREQHAREKEEMALRSG 195
Cdd:pfam02463 193 EELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLK 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 196 QEAAELKEKLRSEMEKNAQTIETLKQDWESERELCLENLRQELSLKHQSEMEGLQSQFQKElsEQKVELEKIFQAKHEAE 275
Cdd:pfam02463 273 ENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKE--KEEIEELEKELKELEIK 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 276 VSLKNLEAQHQAAIKKLQEDLQSEHCQYLQDLEQKFREKEKAKELELEtlqasYEDLKAQSQEEIRLLWSQLESMKTNRE 355
Cdd:pfam02463 351 REAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELE-----LKSEEEKEAQLLLELARQLEDLLKEEK 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 356 ElngswdpvlAQASHLEELEHLRsGFAQQQQQERAQHESELEHLRVYFEKKLKDAEKTYQEDLTVFQQRLQEAREDSLES 435
Cdd:pfam02463 426 K---------EELEILEEEEESI-ELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKL 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 436 TEISSSCVLPEETSGREGKEPPDPLDLQLGQ---------PKVQESLVEDCQVKLSKAEEKIQQMKEEFQKKEAEWELSR 506
Cdd:pfam02463 496 EERSQKESKARSGLKVLLALIKDGVGGRIISahgrlgdlgVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPL 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 507 EELKREAEERLASMFLELREKAESEKLSIISRFEHRE-SSMRHLQDQQAAQILDLERSLMEQQGHLRQLEQELTRDDLLP 585
Cdd:pfam02463 576 GARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATlEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLE 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 586 CSQCGQEPAMAQ--EEKNGALLREKEDCALQLLMAQNRFLEERKEIMEKFAKEQDAFLRDAQEKHNHELQLLQQGHQQQL 663
Cdd:pfam02463 656 EGLAEKSEVKASlsELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKIN 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 664 LALRmELETKHRSELTEQLASSESRRQALLETHVAELQVKHNAEISALEKRHLSNLDELESCYVADVQTIRDEHQQALEL 743
Cdd:pfam02463 736 EELK-LLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEA 814
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 1039732380 744 LRAELEEQLQKKESCHREMLTQELENLK--RQHAEELQSVRDSLRMEMSAQHIENGK 798
Cdd:pfam02463 815 ELLEEEQLLIEQEEKIKEEELEELALELkeEQKLEKLAEEELERLEEEITKEELLQE 871
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2230-2615 |
3.22e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 3.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2230 ANELQKtlSKEQETASDVRK----RLVVEQNAVQDLKSELHACKQENTSLLESLDKVQQEVLR---LRYGHVTWSYCGTS 2302
Cdd:PTZ00121 1184 AEEVRK--AEELRKAEDARKaeaaRKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKaeeERNNEEIRKFEEAR 1261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2303 SASAGRAVLDGKEKELKVVlEELE--SERGKGQALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQLcvALKH 2380
Cdd:PTZ00121 1262 MAHFARRQAAIKAEEARKA-DELKkaEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAA--KKKA 1338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2381 ERAAKDNLQKELQIEASRCEALLAQEKGQLSELQKSLEAERSRSLELSealQHERLLTEQLSRNSQEACARQETqvqhal 2460
Cdd:PTZ00121 1339 EEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK---AEEKKKADEAKKKAEEDKKKADE------ 1409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2461 LRKLKAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQERCVELRREKEVSGNLRSAVDALRthKQELGCCLQREREKAAW 2540
Cdd:PTZ00121 1410 LKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK--KADEAKKKAEEAKKADE 1487
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039732380 2541 LQAELEQlsARVKEQEARKDArrmERRSSRADLDKRKWQRDKETLRELEIQRQRDEHKIEQLQRLVRELRWKEEV 2615
Cdd:PTZ00121 1488 AKKKAEE--AKKKADEAKKAA---EAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEEL 1557
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1074-1293 |
3.69e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 3.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1074 HRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKvdLQEALGKKEESEQQLILELEDLRKQLQQAA 1153
Cdd:COG4913 238 ERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWF--AQRRLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1154 RELLTLKEEKSVLWNQKETLTNEAKEReagspvlpahkdtaLQEEVESLTRvqweSRKQSEKDRATLLSQMRVLESEL-- 1231
Cdd:COG4913 316 ARLDALREELDELEAQIRGNGGDRLEQ--------------LEREIERLER----ELEERERRRARLEALLAALGLPLpa 377
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039732380 1232 -EDQLVQHRgcAQLAEEVATLKQQLAALDKHLRSQRqfmdDQAAEREHEREEFQQEIQRLEGQ 1293
Cdd:COG4913 378 sAEEFAALR--AEAAALLEALEEELEALEEALAEAE----AALRDLRRELRELEAEIASLERR 434
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
203-532 |
5.27e-05 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 48.86 E-value: 5.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 203 EKLRSEMEKNAQT--------IETLKQDWESERELCLENLRQELSLKHQSEMEGLQSQFQKELSEQKvelekifqaKHEA 274
Cdd:NF033838 72 SEIQKSLDKRKHTqnvalnkkLSDIKTEYLYELNVLKEKSEAELTSKTKKELDAAFEQFKKDTLEPG---------KKVA 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 275 EVSLKNLEAQHQAAIKKlQEDLQSEHCQYLQDLEQKFREKE-KAKELELETLQAsyEDLKAQSQEEIRLLWSQLESMKtn 353
Cdd:NF033838 143 EATKKVEEAEKKAKDQK-EEDRRNYPTNTYKTLELEIAESDvEVKKAELELVKE--EAKEPRDEEKIKQAKAKVESKK-- 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 354 reelngswdpvlAQASHLEELEHLRsgfaqqqqqERAQHESELEHLRVYFEKKLKDAEKTYQEDLTVFQQR--LQE-ARE 430
Cdd:NF033838 218 ------------AEATRLEKIKTDR---------EKAEEEAKRRADAKLKEAVEKNVATSEQDKPKRRAKRgvLGEpATP 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 431 DSLESTEISSSCVLPEETsgregkePPDPlDLQLGQpKVQESlvedcQVKLSKAEEKIQQMKEEFQK------------- 497
Cdd:NF033838 277 DKKENDAKSSDSSVGEET-------LPSP-SLKPEK-KVAEA-----EKKVEEAKKKAKDQKEEDRRnyptntyktlele 342
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1039732380 498 --------KEAEWELSREELKR-EAEERLAsmflELREKAESEK 532
Cdd:NF033838 343 iaesdvkvKEAELELVKEEAKEpRNEEKIK----QAKAKVESKK 382
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
242-914 |
7.71e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.60 E-value: 7.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 242 HQSEMEGLQ---SQFQKELSEQKVELEKIFQAKHEAEVSLKNL------EAQHQAAIKKLQEDLQSEHCQYLQDLeQKFR 312
Cdd:PTZ00121 1065 HVGQDEGLKpsyKDFDFDAKEDNRADEATEEAFGKAEEAKKTEtgkaeeARKAEEAKKKAEDARKAEEARKAEDA-RKAE 1143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 313 EKEKAKELELETLQASYEDlkAQSQEEIRLLWSQLESMKTNREElngswdpVLAQASHLEELEHLRsgfaQQQQQERAQH 392
Cdd:PTZ00121 1144 EARKAEDAKRVEIARKAED--ARKAEEARKAEDAKKAEAARKAE-------EVRKAEELRKAEDAR----KAEAARKAEE 1210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 393 ESELEHLRVYFEKKLKDAEKtyqedltvfqqRLQEAREDSLEST---EISSSCVLPEETSGREGKEPPDPLDLQLGQPKV 469
Cdd:PTZ00121 1211 ERKAEEARKAEDAKKAEAVK-----------KAEEAKKDAEEAKkaeEERNNEEIRKFEEARMAHFARRQAAIKAEEARK 1279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 470 QESLVEDCQVK----LSKAEEKiqqMKEEFQKKEAEWELSREELKREAEERLASMfLELREKAESEKLSIISRFEHRESS 545
Cdd:PTZ00121 1280 ADELKKAEEKKkadeAKKAEEK---KKADEAKKKAEEAKKADEAKKKAEEAKKKA-DAAKKKAEEAKKAAEAAKAEAEAA 1355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 546 MRHLQ-DQQAAQILDLERSLMEQQGH-LRQLEQELTRDDLLPcSQCGQEPAMAQEEKNGALLREKEDcALQLLMAQNRFL 623
Cdd:PTZ00121 1356 ADEAEaAEEKAEAAEKKKEEAKKKADaAKKKAEEKKKADEAK-KKAEEDKKKADELKKAAAAKKKAD-EAKKKAEEKKKA 1433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 624 EERKEIMEKfAKEQDAFLRDAQEKHNHELQLLQQGHQQQLLALRMELETKHRSELTEQLASsESRRQALLETHVAELQVK 703
Cdd:PTZ00121 1434 DEAKKKAEE-AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE-EAKKKADEAKKAAEAKKK 1511
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 704 HNAEISALEKRHLSNLDELESCYVADVQTIRDEHQQALELLRAELEEQLQKKESCHREMLTQELENLKRQHAEELQSVRD 783
Cdd:PTZ00121 1512 ADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE 1591
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 784 SLRMEMSAQHIENGKGPAADLQGAHQ-QDPAMALHNEGHLLVEDGDAVLRSVDAEGLLHQAGPQELGDAHTVEMQKSQAE 862
Cdd:PTZ00121 1592 ARIEEVMKLYEEEKKMKAEEAKKAEEaKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAE 1671
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|..
gi 1039732380 863 LAKPQELQASQDQVAQvRDKVFLLNRELEECRaELEQLQQRRERENQEGTTL 914
Cdd:PTZ00121 1672 EDKKKAEEAKKAEEDE-KKAAEALKKEAEEAK-KAEELKKKEAEEKKKAEEL 1721
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1055-1595 |
7.80e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.50 E-value: 7.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1055 SKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALElhTAKGLLEGFKVEKVDLQEALGKKEES 1134
Cdd:TIGR00606 446 KEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTE--TLKKEVKSLQNEKADLDRKLRKLDQE 523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1135 EQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEreagSPVLPAHKDT----------------ALQEE 1198
Cdd:TIGR00606 524 MEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGY----FPNKKQLEDWlhskskeinqtrdrlaKLNKE 599
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1199 VESLTRVQWESRKQSEKDRATLLSqmrvleseLEDQLVQHRGC-------AQLAEEVATLKQQLAALDKHLRSQRQFMDD 1271
Cdd:TIGR00606 600 LASLEQNKNHINNELESKEEQLSS--------YEDKLFDVCGSqdeesdlERLKEEIEKSSKQRAMLAGATAVYSQFITQ 671
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1272 QAAERE------HEREEFQQEIQRLEGQLRQAARPRPpgprdsqcvqldEEVELLQEKLREKLDGFNELVIKKDFADQQL 1345
Cdd:TIGR00606 672 LTDENQsccpvcQRVFQTEAELQEFISDLQSKLRLAP------------DKLKSTESELKKKEKRRDEMLGLAPGRQSII 739
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1346 LIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMGDLLLTTVSRSGLDEAGCPMLPQGSSSRGPE 1425
Cdd:TIGR00606 740 DLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSD 819
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1426 AQPDVTE-RALLQHENEVVHRRNSEIDELKSLIENLQENQRQLQKD----KAEEI-------------EQLHEVIEKLQS 1487
Cdd:TIGR00606 820 LDRTVQQvNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKtnelKSEKLqigtnlqrrqqfeEQLVELSTEVQS 899
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1488 ELSLMGPKVHEVSdPQAGSLHSELAclRGEGLGGQALRSELQAAQAAKEVFGQLlaDQAHGHSQALEALQQ-----RLQD 1562
Cdd:TIGR00606 900 LIREIKDAKEQDS-PLETFLEKDQQ--EKEELISSKETSNKKAQDKVNDIKEKV--KNIHGYMKDIENKIQdgkddYLKQ 974
|
570 580 590
....*....|....*....|....*....|...
gi 1039732380 1563 AEEVAARHLAELEHCVALREAEVEAMASQIQEF 1595
Cdd:TIGR00606 975 KETELNTVNAQLEECEKHQEKINEDMRLMRQDI 1007
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
2314-2616 |
9.76e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.43 E-value: 9.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2314 KEKELKVVLEELESERgkgqALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQLCVA-LKHERAAKDNLQKEL 2392
Cdd:pfam02463 171 KKEALKKLIEETENLA----ELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDyLKLNEERIDLLQELL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2393 QIEASRCEALLAQEKGQLSELQKSLEAERSRslELSEALQHERLLTEQLSRNSQEACARQETQVQHALLRKLKAEKTRAL 2472
Cdd:pfam02463 247 RDEQEEIESSKQEIEKEEEKLAQVLKENKEE--EKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2473 ELEAMLEKVQKQAAHTQQQLEAQAQERCVELRREKEVSGNLRSAVDALRTHKQELGCCLQREREKAAWLQAELEQLSARV 2552
Cdd:pfam02463 325 KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEE 404
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039732380 2553 KEQEARKDARRMERRSSRADLDKRKWQRDKETLRELEIQRQRDEHKIEQLQRLVRELRWKEEVS 2616
Cdd:pfam02463 405 KEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELK 468
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
886-1386 |
9.87e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.11 E-value: 9.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 886 LNRELEECRAELEQLQQRRERENQEGTTLICMLrADLELAQGEGKALRDALRRLLDLFGDTLKAAVTLKSRISERAGLLL 965
Cdd:PRK02224 211 LESELAELDEEIERYEEQREQARETRDEADEVL-EEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 966 DHEDAADtsdARLAAAALGDMWSDEGLLEIDRTLPEGAETSSVCEisshvcesffispentlDCEQPIrrvyQSLSTAVE 1045
Cdd:PRK02224 290 ELEEERD---DLLAEAGLDDADAEAVEARREELEDRDEELRDRLE-----------------ECRVAA----QAHNEEAE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1046 GLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEK---- 1121
Cdd:PRK02224 346 SLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERdelr 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1122 -------VDLQEALGKKEESEQQL-----------------ILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTnEA 1177
Cdd:PRK02224 426 ereaeleATLRTARERVEEAEALLeagkcpecgqpvegsphVETIEEDRERVEELEAELEDLEEEVEEVEERLERAE-DL 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1178 KEREAGSpvlpahkdTALQEEVESLTRVQWESRKQSEKDRATlLSQMRVLESELEDQLVQHRGCAQLA--------EEVA 1249
Cdd:PRK02224 505 VEAEDRI--------ERLEERREDLEELIAERRETIEEKRER-AEELRERAAELEAEAEEKREAAAEAeeeaeearEEVA 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1250 TLKQQLAALDKHLRSQRQFMDDQAAEREHEreefqQEIQRLEGQLRQAARprppgprdsqcvQLDEEVELLQEK------ 1323
Cdd:PRK02224 576 ELNSKLAELKERIESLERIRTLLAAIADAE-----DEIERLREKREALAE------------LNDERRERLAEKrerkre 638
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039732380 1324 LREKLDG--FNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEkqkkSMEELKEK 1386
Cdd:PRK02224 639 LEAEFDEarIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELE----ELEELRER 699
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
203-319 |
1.14e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 47.90 E-value: 1.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 203 EKLRSEMEKNAQTIETLKQDweserelcLENLRQELSLKhqseMEGLQSQFQKELSEQKVEL-EKIFQAKHEAEVSLKNL 281
Cdd:PRK00409 526 EELERELEQKAEEAEALLKE--------AEKLKEELEEK----KEKLQEEEDKLLEEAEKEAqQAIKEAKKEADEIIKEL 593
|
90 100 110
....*....|....*....|....*....|....*....
gi 1039732380 282 EAQHQAAIKKLQE-DLQSEHCQYLQDLEQKFREKEKAKE 319
Cdd:PRK00409 594 RQLQKGGYASVKAhELIEARKRLNKANEKKEKKKKKQKE 632
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2301-2558 |
1.34e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.74 E-value: 1.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2301 TSSASAGRAVLDGKEKELKVVLEELESERGKGQALQAQQEEQQLRyLQREGQSSRALEELKLSLEKQLAQNNQLCVALKH 2380
Cdd:TIGR02168 690 EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD-LARLEAEVEQLEERIAQLSKELTELEAEIEELEE 768
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2381 ERAAKDNLQKELQIEASRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQEACAR-QETQVQHA 2459
Cdd:TIGR02168 769 RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRlEDLEEQIE 848
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2460 LLRKLKAEKTRALE-LEAMLEKVQKQAAHTQQQLEAQAQERcVELRREKEvsgNLRSAVDALRTHKQELGCCLQREREKA 2538
Cdd:TIGR02168 849 ELSEDIESLAAEIEeLEELIEELESELEALLNERASLEEAL-ALLRSELE---ELSEELRELESKRSELRRELEELREKL 924
|
250 260
....*....|....*....|
gi 1039732380 2539 AWLQAELEQLSARVKEQEAR 2558
Cdd:TIGR02168 925 AQLELRLEGLEVRIDNLQER 944
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
119-722 |
1.43e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.74 E-value: 1.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 119 ELEALRLSLNNMHTAQLELT---------QANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELLREQHAREKEE 189
Cdd:TIGR02168 268 KLEELRLEVSELEEEIEELQkelyalaneISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 190 MALRSGQEAAELKEKLRSEMEKNAQTIETLKQDWESERELCLENLRQELSL-KHQSEMEGLQSQFQKELSEQKVELEKIF 268
Cdd:TIGR02168 348 ELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLnNEIERLEARLERLEDRRERLQQEIEELL 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 269 QAKHEAEVSLKNLE-AQHQAAIKKLQEDLQSEHCQY--LQDLEQKFREKEKAKELELETLQASYEDLKAQsQEEIRLLWS 345
Cdd:TIGR02168 428 KKLEEAELKELQAElEELEEELEELQEELERLEEALeeLREELEEAEQALDAAERELAQLQARLDSLERL-QENLEGFSE 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 346 QLESMKTNREELNGSWDPVLAQ---------------------------------ASHLEELEHLRSGFAQQQQQERAQH 392
Cdd:TIGR02168 507 GVKALLKNQSGLSGILGVLSELisvdegyeaaieaalggrlqavvvenlnaakkaIAFLKQNELGRVTFLPLDSIKGTEI 586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 393 ESELEHLR-------------VYFEKKLKDAeKTYQEDLTVFQQRLQEAREDSLESTEISSSCVLPEETSGREG-----K 454
Cdd:TIGR02168 587 QGNDREILkniegflgvakdlVKFDPKLRKA-LSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGvitggS 665
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 455 EPPDPLDLQLGQP--------KVQESLVEDCQVKLSKAEEKIQQMKEEFQKKEAEWE------------LSREELKREAE 514
Cdd:TIGR02168 666 AKTNSSILERRREieeleekiEELEEKIAELEKALAELRKELEELEEELEQLRKELEelsrqisalrkdLARLEAEVEQL 745
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 515 E----RLASMFLELREKAESEKLSIISRFEHRESSMRHLQDQQaAQILDLERSLMEQQGHLRQLEQELTRDdllpcsqcg 590
Cdd:TIGR02168 746 EeriaQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE-AQIEQLKEELKALREALDELRAELTLL--------- 815
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 591 QEPAMAQEEKNGALLREKEDCALQLLMAQNRfLEERKEIMEKFAKEQDAfLRDAQEKhnHELQLLQQGHQQQLLALRMEL 670
Cdd:TIGR02168 816 NEEAANLRERLESLERRIAATERRLEDLEEQ-IEELSEDIESLAAEIEE-LEELIEE--LESELEALLNERASLEEALAL 891
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....
gi 1039732380 671 ETKHRSELTEQLASSESRRQALLE--THVAELQVKHNAEISALEKRHLSNLDEL 722
Cdd:TIGR02168 892 LRSELEELSEELRELESKRSELRRelEELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
136-409 |
1.46e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 136 ELTQANLQKEKEtaltELREMLNGRRAQELALLQSRQQCELELLREQHAREKEE--MALRSGQEAAELKEKLRSEMEKNA 213
Cdd:PTZ00121 1526 EAKKAEEAKKAD----EAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDknMALRKAEEAKKAEEARIEEVMKLY 1601
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 214 QTIETLKQDWESERElclENLRQELSLKHQSEMEGLQSQFQKELSEQKVELEKIFQAKHEAEVSLKNLEAQHQAAIKKLQ 293
Cdd:PTZ00121 1602 EEEKKMKAEEAKKAE---EAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE 1678
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 294 EDLQSEHCQYLQDLEQKFREKEKAKELELETLQASYEDLKAQSQEEIRLLWSQLESMKTNREELNGSWDPVLAQASHLEE 373
Cdd:PTZ00121 1679 EAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKK 1758
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1039732380 374 LEHLRSGFAQQQQQERAQHES--------ELEHLRVYFEKKLKD 409
Cdd:PTZ00121 1759 IAHLKKEEEKKAEEIRKEKEAvieeeldeEDEKRRMEVDKKIKD 1802
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
199-969 |
1.56e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.66 E-value: 1.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 199 AELKEKLRSEMEKNAQTIETLKQDWESERELCLEnlRQELSLKHQSEMEGLQSQFQKELSEQKVELEKIFQAKHEAEVSL 278
Cdd:pfam02463 165 SRLKRKKKEALKKLIEETENLAELIIDLEELKLQ--ELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 279 KNLEAQHQAAIKKLQEDLQSEhcQYLQDLEQKFREKEKAKELELETLQASYEDLKAQSQEEIRLLWSQLESmktNREELN 358
Cdd:pfam02463 243 QELLRDEQEEIESSKQEIEKE--EEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVD---DEEKLK 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 359 GSWDPVLAQASHLEELEHLRSGFAQQQQQERAQHESELEhlRVYFEKKLKDAEKTYQEDLTVFQQRLQEAREDSLESTEI 438
Cdd:pfam02463 318 ESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEE--EEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 439 SSSCVLPEETSGREGKEPPDPLDLQLGQPKVQESLVEDCQVKLSKAEEKIQQMKEEFQKKEA--EWELSREELKREAEER 516
Cdd:pfam02463 396 ELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQElkLLKDELELKKSEDLLK 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 517 LASMFLELREKAESEKLSIISRFEHRESSMRHLQDQQAAQILDLE-RSLMEQQGHLRQLEQELTRDDLLPCSQCGQEPAM 595
Cdd:pfam02463 476 ETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVgGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSA 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 596 AQEEKNGALLREKEDCALQLLMAQNRFLEERKEIMEKFAKEQDAFLRDAQEKhNHELQLLQQGHQQQLLALRMELETKHR 675
Cdd:pfam02463 556 TADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQ-LDKATLEADEDDKRAKVVEGILKDTEL 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 676 SELTEQLASSESRRQALLETHVAELQVKHNAEISALEKRHLSNLDELESCYVADVQTIRDEHQQALELLRAELEEQLQKK 755
Cdd:pfam02463 635 TKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKK 714
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 756 ESCHRE----MLTQELENLKRQHAEELQSVRDSLRMEMSAQHIENGKGPAADLQGAHQQDPA--MALHNEGHLLVEDGDA 829
Cdd:pfam02463 715 LKLEAEellaDRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELaeEREKTEKLKVEEEKEE 794
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 830 VLRSVDAEGLLHQAGPQELGDAHTVEMQKSQAELAKPQELQASQDQVAQVRDKVFLLNRE-LEECRAELEQLQQRREREN 908
Cdd:pfam02463 795 KLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEeLERLEEEITKEELLQELLL 874
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039732380 909 QEGTTLICMLRADLELAQGEGKALRDALRRLLDLFGDTLKAAVTLKSRISERAGLLLDHED 969
Cdd:pfam02463 875 KEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEE 935
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1284-1410 |
2.20e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 46.77 E-value: 2.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1284 QQEIQRLEGQLRQaarprppgprdsqcvqLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQ---EEEIKRLEETNA 1360
Cdd:COG2433 412 EEEIRRLEEQVER----------------LEAEVEELEAELEEKDERIERLERELSEARSEERREirkDREISRLDREIE 475
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1039732380 1361 SIQRQMVQLQEELEKQKKSMEELkeKEILKQENMGDLL----LTTVSRSGLDEA 1410
Cdd:COG2433 476 RLERELEEERERIEELKRKLERL--KELWKLEHSGELVpvkvVEKFTKEAIRRL 527
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2080-2566 |
2.71e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.85 E-value: 2.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2080 RDSQALSEVTTDKGEKESLETHL-TWSEELLRAIQEVFAREQEKAELQprpygsnlGDYNSLVQRLEKVIQEQGDPQKVQ 2158
Cdd:COG1196 310 RRRELEERLEELEEELAELEEELeELEEELEELEEELEEAEEELEEAE--------AELAEAEEALLEAEAELAEAEEEL 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2159 DHLcLSDRSSLLAEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELLAYKVEQEKCIANELQKTLS 2238
Cdd:COG1196 382 EEL-AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2239 KEQETASDVRKRLVVEQnAVQDLKSELHACKQENTSLLESLDKVQQEVLRLRYGHVTWSYCGtsSASAGRAVLDGKEKEL 2318
Cdd:COG1196 461 LLELLAELLEEAALLEA-ALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG--LAGAVAVLIGVEAAYE 537
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2319 KVVLEELESERGKGQALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQLCVALKHERAAKDNLQKELQIEASR 2398
Cdd:COG1196 538 AALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYV 617
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2399 CEALLAQEkgqlSELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQEAcaRQETQVQHALLRKLKAEKTRALELEAML 2478
Cdd:COG1196 618 LGDTLLGR----TLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLT--GGSRRELLAALLEAEAELEELAERLAEE 691
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2479 EKVQKQAAHTQQQLEAQAQERCVELRREKEVSGNLRSAVDALRTHKQELGCCLQREREKAAwLQAELEQLSARVKEQEAR 2558
Cdd:COG1196 692 ELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEA-LEELPEPPDLEELERELE 770
|
....*...
gi 1039732380 2559 KDARRMER 2566
Cdd:COG1196 771 RLEREIEA 778
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
139-583 |
3.59e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.50 E-value: 3.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 139 QANLQKEKETALTELREMLNGRRAQELALLQSRQQCE----------LELLREQHAREKEEMALRSGQEAAELKEKLRSE 208
Cdd:TIGR00618 450 TAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETrkkavvlarlLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRR 529
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 209 MEKNAQTIETLKQDWESERELCLENLRQELSLKHQseMEGLQSQFQKELSEQKVELEKIFQAKHEAEVSLKNLEAQHQAA 288
Cdd:TIGR00618 530 MQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQ--MQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAE 607
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 289 IKKLQED----LQSEHCQYLQDLEQKFREKEKAKELELETLQASYEDLKAQSQEEIRLLWSQLESMKTNREELNGSwdpv 364
Cdd:TIGR00618 608 DMLACEQhallRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQ---- 683
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 365 lAQASHLEELEHLRSGFAQQQQQERAQHESELEHLRVYFE--KKLKDAEKTYQEDLTVFQQRLQEAREDSLEsteisssc 442
Cdd:TIGR00618 684 -KMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEieNASSSLGSDLAAREDALNQSLKELMHQART-------- 754
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 443 VLPEETSGREGKEPPDPLDLQLGQPkvQESLVEDCQVKLSKAEEKIQQMKE---EFQKKEAEWELSREELKREAEERLAS 519
Cdd:TIGR00618 755 VLKARTEAHFNNNEEVTAALQTGAE--LSHLAAEIQFFNRLREEDTHLLKTleaEIGQEIPSDEDILNLQCETLVQEEEQ 832
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039732380 520 MFLELREKAESEkLSIISRFEHRESSMRHLQD--QQAAQILDLERSL--------MEQQGHLRQLEQELTRDDL 583
Cdd:TIGR00618 833 FLSRLEEKSATL-GEITHQLLKYEECSKQLAQltQEQAKIIQLSDKLnginqikiQFDGDALIKFLHEITLYAN 905
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
134-358 |
4.55e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.78 E-value: 4.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 134 QLELTQANlqkekeTALTELREMLNGRRAQELALLQSRQQCELELLREQHAREKEEmalrsgqeaaelKEKLRSEMEKNA 213
Cdd:TIGR04523 273 QKELEQNN------KKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKK------------LEEIQNQISQNN 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 214 QTIETLKQDweserelcLENLRQELSlkhqsEMEGLQSQFQKELSEQKVELEKIFQAKHEAEVSLKNLEAQHQAAIKKLQ 293
Cdd:TIGR04523 335 KIISQLNEQ--------ISQLKKELT-----NSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQ 401
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039732380 294 EDlqsehcqylQDLEQKFREKEKAKELELETLQASYEDLKAQ---SQEEIRLLWSQLESMKTNREELN 358
Cdd:TIGR04523 402 NQ---------EKLNQQKDEQIKKLQQEKELLEKEIERLKETiikNNSEIKDLTNQDSVKELIIKNLD 460
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2134-2446 |
5.97e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 5.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2134 LGDYNSLVQRLEKVIQEQGDPQKVQDHLclsdrSSLLAEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLR 2213
Cdd:TIGR02168 231 VLRLEELREELEELQEELKEAEEELEEL-----TAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2214 RQVELLAYKVEQEKCIANELQKTLSKEQETA---SDVRKRLVVEQNAVQDLKSELHACKQENTSLLESLDKVQQEVLRLR 2290
Cdd:TIGR02168 306 ILRERLANLERQLEELEAQLEELESKLDELAeelAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2291 yghvtwsyCGTSSASAGRAVLDGKEKELKVVLEELESERGKGQALQAQQEEQQLRYLQREgqSSRALEELKLSLEKQLAQ 2370
Cdd:TIGR02168 386 --------SKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE--LQAELEELEEELEELQEE 455
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039732380 2371 NNQLCVALKHERAAKDNLQKELQIEASRcealLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQ 2446
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQALDAAERE----LAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSE 527
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1199-1603 |
7.91e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 7.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1199 VESLTRVQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALD---KHLRSQRQFMDD--QA 1273
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEaelEELREELEKLEKllQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1274 AEREHEREEFQQEIQRLEGQLRQA-ARPRPPGPRDSQCVQLDEEVELLQEKLREKLDGFNeLVIKKDFADQQLLIQE--E 1350
Cdd:COG4717 128 LPLYQELEALEAELAELPERLEELeERLEELRELEEELEELEAELAELQEELEELLEQLS-LATEEELQDLAEELEElqQ 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1351 EIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQE---------------NMGDLLLTTVSRSGLDEAGCPML 1415
Cdd:COG4717 207 RLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEArlllliaaallallgLGGSLLSLILTIAGVLFLVLGLL 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1416 PQGSSSRGPEAQPDVTERALLQHENEVVHRRNSEIDELKS---LIENLQENQRQLQKDKAEEIEQLHEVIEKLQSELSLM 1492
Cdd:COG4717 287 ALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAalgLPPDLSPEELLELLDRIEELQELLREAEELEEELQLE 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1493 GPKVHEVSDPQAGSLHSElaclrgeglggQALRSELQAAQAAKEVFGQLLADQAHGHSQALEALQQRLQDAEEVAARHLA 1572
Cdd:COG4717 367 ELEQEIAALLAEAGVEDE-----------EELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELE 435
|
410 420 430
....*....|....*....|....*....|.
gi 1039732380 1573 ELEHCVALREAEVEAMASQIQEFAATLKAKE 1603
Cdd:COG4717 436 ELEEELEELEEELEELREELAELEAELEQLE 466
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1091-1305 |
8.26e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 8.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1091 ERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQK 1170
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1171 ETLTNEAKER--------EAGSPVLPAHKDTALQEE-----VESLTRVQWESRKQSEKDRATLLSQMRVLESELEDQLVQ 1237
Cdd:COG4942 100 EAQKEELAELlralyrlgRQPPLALLLSPEDFLDAVrrlqyLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039732380 1238 HRGCAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAARPRPPGP 1305
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1312-1487 |
8.26e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 8.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1312 QLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELkEKEILKQ 1391
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL-RAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1392 ENMGDLLLTTVSRSGLDEAGCPMLPQGSSSRGpeaqpdVTERALLQHeneVVHRRNSEIDELKSLIENLQENQRQLQKDK 1471
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLALLLSPEDFLDA------VRRLQYLKY---LAPARREQAEELRADLAELAALRAELEAER 173
|
170
....*....|....*.
gi 1039732380 1472 AEEIEQLHEVIEKLQS 1487
Cdd:COG4942 174 AELEALLAELEEERAA 189
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2171-2448 |
8.37e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 8.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2171 AEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQRE------HQLRRQVELLAYKVEQEKCIANELQKTLSKEQETA 2244
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEqlrkelEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2245 SDVRKRLVVEQNAVQDLKSELHACKQENTSLLESLDKVQQEvlrlryghvtwsycgtssASAGRAVLDGKEKELKvvleE 2324
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE------------------LKALREALDELRAELT----L 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2325 LESERGKgqalqaqQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQLCVALKHERAAKDNLQKELQI---EASRCEA 2401
Cdd:TIGR02168 815 LNEEAAN-------LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAllnERASLEE 887
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1039732380 2402 LLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQEA 2448
Cdd:TIGR02168 888 ALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL 934
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2202-2573 |
8.51e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.13 E-value: 8.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2202 EARGSQREHQLRRQVELLAYKVEQEKcIANELQKTlSKEQETASDVRKRLVVEQNAVQDLKSELHAcKQENTSLLESLDK 2281
Cdd:PTZ00121 1445 KADEAKKKAEEAKKAEEAKKKAEEAK-KADEAKKK-AEEAKKADEAKKKAEEAKKKADEAKKAAEA-KKKADEAKKAEEA 1521
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2282 VQQEVLRlryghvtwsycgtsSASAGRAVLDGKEKELKVVLEELESERGKGQALQAQQEEQQLRYLQREGQSSRALEELK 2361
Cdd:PTZ00121 1522 KKADEAK--------------KAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK 1587
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2362 LSLEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRCEALlAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQL 2441
Cdd:PTZ00121 1588 KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA-EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE 1666
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2442 SRN-------SQEACARQETQVQHALLRKLKAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQERCVELRREKEVSgnlR 2514
Cdd:PTZ00121 1667 AKKaeedkkkAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED---K 1743
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2515 SAVDALRTHKQELGCCLQREREKAAWLQAELEQLSARVKEQEARKD-ARRMERRSSRADL 2573
Cdd:PTZ00121 1744 KKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDeKRRMEVDKKIKDI 1803
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
152-940 |
9.82e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.11 E-value: 9.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 152 ELREMLNGRRAQELALLQSRQQcELELLREQHArekeEMALRSGQEAAELKEKLRSEMEKnAQTIETLKQDWESERELCL 231
Cdd:pfam15921 99 ELHEKQKFYLRQSVIDLQTKLQ-EMQMERDAMA----DIRRRESQSQEDLRNQLQNTVHE-LEAAKCLKEDMLEDSNTQI 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 232 ENLRQeLSLKHQSEMEGLQSQFqkeLSEQKVELEKIFQAKHEAEVSLKNLeaqhQAAIKKLQEDLQSEhCQYLQ------ 305
Cdd:pfam15921 173 EQLRK-MMLSHEGVLQEIRSIL---VDFEEASGKKIYEHDSMSTMHFRSL----GSAISKILRELDTE-ISYLKgrifpv 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 306 --DLEQKFREKEKAKELELETLQASYEDLKAQSQEEIRLLWSQLESMKTNREELNGSWDPVLAQAS--------HLEELE 375
Cdd:pfam15921 244 edQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARnqnsmymrQLSDLE 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 376 HLRSgfaqqqqqeraQHESELEHLRVYFEKKLKDAEKtyqeDLTVFQQRLQEAREDSLESTEISSSCVLPEETSGREGKE 455
Cdd:pfam15921 324 STVS-----------QLRSELREAKRMYEDKIEELEK----QLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHK 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 456 PPDPLDLQLGQPKVQESLVEDCQVKLSKAEEKIQQMKEEFQKKEAEWELSREELKREAEERLASmfleLREKAES-EKLS 534
Cdd:pfam15921 389 REKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAA----IQGKNESlEKVS 464
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 535 -IISRFEHRESSMRHLQDQQAAQILDLERSlmeqqghlrqleqELTRDDLlpcSQCGQEPAMAQEEKNGAL--LREKEDC 611
Cdd:pfam15921 465 sLTAQLESTKEMLRKVVEELTAKKMTLESS-------------ERTVSDL---TASLQEKERAIEATNAEItkLRSRVDL 528
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 612 ALQLLmaqnRFLEERKEIMEKFAKEQDAFLRDAQEKhnhelqLLQQGHQQQLLALRMELETKH-RSELTEQLASSE---- 686
Cdd:pfam15921 529 KLQEL----QHLKNEGDHLRNVQTECEALKLQMAEK------DKVIEILRQQIENMTQLVGQHgRTAGAMQVEKAQleke 598
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 687 --SRRQALLETHVaeLQVKHNAEISALEKRhLSNLdELESCYVADVQTirdEHQQALELLRAELEEQLQKKESCHREM-- 762
Cdd:pfam15921 599 inDRRLELQEFKI--LKDKKDAKIRELEAR-VSDL-ELEKVKLVNAGS---ERLRAVKDIKQERDQLLNEVKTSRNELns 671
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 763 LTQELENLKRQ---HAEELQSVRDSLRMEM-SAQ-HIENGKGPAADLQGAHQQDPAMALHNEGHLLVEDG--DAVLRSVD 835
Cdd:pfam15921 672 LSEDYEVLKRNfrnKSEEMETTTNKLKMQLkSAQsELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGqiDALQSKIQ 751
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 836 aegLLHQAGPQELGDAHTVEMQKSQ--AELAK--------PQELQASQDQVAQVRDKVFLLNRELEECRAELEQLQQRRE 905
Cdd:pfam15921 752 ---FLEEAMTNANKEKHFLKEEKNKlsQELSTvateknkmAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQ 828
|
810 820 830
....*....|....*....|....*....|....*.
gi 1039732380 906 RENQEGTTLICMLRADLELAQGEGKALRDALR-RLL 940
Cdd:pfam15921 829 RQEQESVRLKLQHTLDVKELQGPGYTSNSSMKpRLL 864
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1189-1598 |
9.94e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.83 E-value: 9.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1189 AHKDTALQEEVESLtrvqwesrKQSEKDRATLLSQMRVLESELEDQLvqhrgcAQLAEEVATLKQQLAALDKHLRSQRQF 1268
Cdd:pfam12128 240 RPEFTKLQQEFNTL--------ESAELRLSHLHFGYKSDETLIASRQ------EERQETSAELNQLLRTLDDQWKEKRDE 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1269 MDDQAAEREHEREEFQQEIQRLEGQLRQAARPRPPGPR---------DSQCVQLDEEVELLQEKLREKLDGFNELVIK-- 1337
Cdd:pfam12128 306 LNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAadqeqlpswQSELENLEERLKALTGKHQDVTAKYNRRRSKik 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1338 -------KDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKsmeELKEKEILKQENMGDLllttvsrsgldea 1410
Cdd:pfam12128 386 eqnnrdiAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKL---EFNEEEYRLKSRLGEL------------- 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1411 gcpmlpqgsssRGPEAQPDVTERALLQHEN--EVVHRRNSEIDELKSLIENLQENQRQLQK--DKAEE-IEQLHEVIEKL 1485
Cdd:pfam12128 450 -----------KLRLNQATATPELLLQLENfdERIERAREEQEAANAEVERLQSELRQARKrrDQASEaLRQASRRLEER 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1486 QSELSlmgpKVHEVSDPQAGSLHSELA------------CLRGEGLGGQALRSELQAAQAAKE--VFG------QLLADQ 1545
Cdd:pfam12128 519 QSALD----ELELQLFPQAGTLLHFLRkeapdweqsigkVISPELLHRTDLDPEVWDGSVGGElnLYGvkldlkRIDVPE 594
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1039732380 1546 AHGHSQALEALQQRLQDAEEVAARHLAELEHCVALREAEVEAmASQIQEFAAT 1598
Cdd:pfam12128 595 WAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEK-ASREETFART 646
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
2463-2618 |
9.97e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.85 E-value: 9.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2463 KLKAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQERCV-ELRREKEVSGNLRSAVDALRTHKQELgcclqrerekaawl 2541
Cdd:COG2433 367 EVKARVIRGLSIEEALEELIEKELPEEEPEAEREKEHEErELTEEEEEIRRLEEQVERLEAEVEEL-------------- 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2542 QAELEQLSARVKEQEAR-KDARRMERRSSRADldkRKWQRDKETLRELEIQRQRDEHKIEQLQRLVRELR--WKEEVSGG 2618
Cdd:COG2433 433 EAELEEKDERIERLERElSEARSEERREIRKD---REISRLDREIERLERELEEERERIEELKRKLERLKelWKLEHSGE 509
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
176-431 |
1.19e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 176 LELLREQHAREKEEMAlrsgqEAAELKEKLRSEMEKNAQTIETLKQ---------DWES-ERELclENLRQELS--LKHQ 243
Cdd:COG4913 612 LAALEAELAELEEELA-----EAEERLEALEAELDALQERREALQRlaeyswdeiDVASaEREI--AELEAELErlDASS 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 244 SEMEGLQSQF---QKELSEQKVELEKIFQAKHEAEVSLKNLEAQHQAAIKKLQEDLQSEHCQYLQDLEQKFREkEKAKEL 320
Cdd:COG4913 685 DDLAALEEQLeelEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAA-ALGDAV 763
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 321 ElETLQASYEDLKAQSQEEIRLLWSQLESMKT--NRE--ELNGSWDPVLAQASH-LEELEHLRsgfaqqqqqeraqhESE 395
Cdd:COG4913 764 E-RELRENLEERIDALRARLNRAEEELERAMRafNREwpAETADLDADLESLPEyLALLDRLE--------------EDG 828
|
250 260 270
....*....|....*....|....*....|....*..
gi 1039732380 396 LEHlrvyFEKKLKDA-EKTYQEDLTVFQQRLQEARED 431
Cdd:COG4913 829 LPE----YEERFKELlNENSIEFVADLLSKLRRAIRE 861
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
203-349 |
1.29e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.38 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 203 EKLRSEMEKNAQTIetLKqdwESERELclENLRQELSLKHQSEMEGLQSQFQKELSEQKVELEKIFQAKHEAEVSLKNle 282
Cdd:PRK12704 30 EAKIKEAEEEAKRI--LE---EAKKEA--EAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDR-- 100
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039732380 283 aqHQAAIKKLQEDLQSEhcqyLQDLEQKFREKEKaKELELETLQASY----EDLKAQSQEEIR-LLWSQLES 349
Cdd:PRK12704 101 --KLELLEKREEELEKK----EKELEQKQQELEK-KEEELEELIEEQlqelERISGLTAEEAKeILLEKVEE 165
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1142-1372 |
1.63e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1142 LEDLRKQLQQAARELLTLKEEKSVLWNQKETLtneakereagspvlpahkdTALQEEVESLTRVQWEsrkqsEKDRATLL 1221
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDAL-------------------QERREALQRLAEYSWD-----EIDVASAE 667
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1222 SQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQfmddqaaerehEREEFQQEIQRLEGQLRQAARpr 1301
Cdd:COG4913 668 REIAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKG-----------EIGRLEKELEQAEEELDELQD-- 734
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039732380 1302 ppgprdsqcvQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEE 1372
Cdd:COG4913 735 ----------RLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1478-1614 |
1.79e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 43.42 E-value: 1.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1478 LHEVIEKLQSELSLMGPKVHEVSD------PQAGSLHSELACLRGEGLGGQALRSELQAAQAAKEVFGQLLADQAHGHSQ 1551
Cdd:PRK09039 44 LSREISGKDSALDRLNSQIAELADllslerQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQ 123
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039732380 1552 ALEALQQrlqdaeeVAARHLAElehcVALREAEVEAMASQIQEFAATLKAKEAIIEQRDLEID 1614
Cdd:PRK09039 124 ELDSEKQ-------VSARALAQ----VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIA 175
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
119-551 |
1.84e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.90 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 119 ELEALRLSLNNMHTAQLELTQANLQKEK--------ETALTELREMLNGRRAQELALLQSRQQCE-----------LELL 179
Cdd:PRK03918 222 ELEKLEKEVKELEELKEEIEELEKELESlegskrklEEKIRELEERIEELKKEIEELEEKVKELKelkekaeeyikLSEF 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 180 REQHAREKEEMALRSG---QEAAELKEKLRSEMEKNAQTIETLKQDWESERELCLENLRQEL---SLKHQSEMEGLQSQF 253
Cdd:PRK03918 302 YEEYLDELREIEKRLSrleEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELyeeAKAKKEELERLKKRL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 254 Q-KELSEQKVELEKIFQAKHEAEV----------SLKNLEAQHQAAIKKLQE----------DLQSEHcqyLQDLEQKFR 312
Cdd:PRK03918 382 TgLTPEKLEKELEELEKAKEEIEEeiskitarigELKKEIKELKKAIEELKKakgkcpvcgrELTEEH---RKELLEEYT 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 313 EKEKAKELELETLQASYEDLKAQ---------SQEEIRLLWSQLESMKTNREELNGSWDPVLAQAShlEELEHLRSGFAQ 383
Cdd:PRK03918 459 AELKRIEKELKEIEEKERKLRKElrelekvlkKESELIKLKELAEQLKELEEKLKKYNLEELEKKA--EEYEKLKEKLIK 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 384 -----QQQQERAQHESELEHLRVYFEKKLKDAEktyqEDLTVFQQRLQEAREDSLESTEISSSCVLPEETSGREGKEPPD 458
Cdd:PRK03918 537 lkgeiKSLKKELEKLEELKKKLAELEKKLDELE----EELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEK 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 459 PLdlqlgqpKVQESLVEDCQVKLSKAEEKIQQMKEEFQKKEAEWELSREELKREAEERLASMFLELREKAESEKLSIISR 538
Cdd:PRK03918 613 EL-------EREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEEL 685
|
490
....*....|...
gi 1039732380 539 FEHRESSMRHLQD 551
Cdd:PRK03918 686 EKRREEIKKTLEK 698
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1084-1488 |
1.84e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.86 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1084 QKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEK 1163
Cdd:TIGR04523 225 KQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQK 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1164 SVLWNQ--KETLTNEAKE-REAGSPVLPAHKD-TALQEEVESLTRvqweSRKQSEKDRATLLSQMRVLESELEDQLVQHr 1239
Cdd:TIGR04523 305 EQDWNKelKSELKNQEKKlEEIQNQISQNNKIiSQLNEQISQLKK----ELTNSESENSEKQRELEEKQNEIEKLKKEN- 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1240 gcAQLAEEVATLKQQLAALDKHLRSQR---QFMDDQAAEREHEREEFQQEIQRLEgqlrqaarprppgprdSQCVQLDEE 1316
Cdd:TIGR04523 380 --QSYKQEIKNLESQINDLESKIQNQEklnQQKDEQIKKLQQEKELLEKEIERLK----------------ETIIKNNSE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1317 VELLQEKLREKLDGFNELVIKKDfadqqllIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMGD 1396
Cdd:TIGR04523 442 IKDLTNQDSVKELIIKNLDNTRE-------SLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKD 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1397 LLlttvsrsgldeagcpmlPQGSSSRgpeaqpdVTERALLQHENEVVHRRNSEIDELKSLIENLQENQRQLQKD-KAEEI 1475
Cdd:TIGR04523 515 LT-----------------KKISSLK-------EKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDeKNKEI 570
|
410
....*....|...
gi 1039732380 1476 EQLHEVIEKLQSE 1488
Cdd:TIGR04523 571 EELKQTQKSLKKK 583
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2194-2451 |
2.94e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 2.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2194 LCAALTSTEARGSQRE-HQLRRQVELLAYKVEQEKCIANELQKTLSKEQETASDVRKRLVVEQNAVQDLKSELHACKQEN 2272
Cdd:COG4942 13 LAAAAQADAAAEAEAElEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2273 TSLLESLDKVQQEVLRLryghvtwsycgtssasAGRAVLDGKEKELKVVLeelesergkgqalQAQQEEQQLRYLQREGQ 2352
Cdd:COG4942 93 AELRAELEAQKEELAEL----------------LRALYRLGRQPPLALLL-------------SPEDFLDAVRRLQYLKY 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2353 SSRALEELKLSLEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQ 2432
Cdd:COG4942 144 LAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAE 223
|
250
....*....|....*....
gi 1039732380 2433 HERLLTEQLSRNSQEACAR 2451
Cdd:COG4942 224 ELEALIARLEAEAAAAAER 242
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
851-1462 |
2.98e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 2.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 851 AHTVEMQKSQAELAKPQELQASQDQVAQVRdKVFLLNRELEECRAELEQLQQRRERenqegttlicmLRADLELAQGEgk 930
Cdd:COG4913 259 ELAERYAAARERLAELEYLRAALRLWFAQR-RLELLEAELEELRAELARLEAELER-----------LEARLDALREE-- 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 931 aLRDALRRLLDLFGDTLKAavtLKSRISERAGLLLDHEDAADTSDARLAAAALGDMWSDEGLLEIDRTLPEGAEtssvce 1010
Cdd:COG4913 325 -LDELEAQIRGNGGDRLEQ---LEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLE------ 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1011 isshvcesffispentldceqpirrvyqslstavegllemaldsskqlEEARQLHRCVEREFRHRNEEmAQAMQKQQELL 1090
Cdd:COG4913 395 ------------------------------------------------ALEEELEALEEALAEAEAAL-RDLRRELRELE 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1091 ERLREESAAKDRLALELHTAKGLLEgfkvekvdlqEALGKKEeseqqlilelEDLRkqlqqAARELLTLKEEKS------ 1164
Cdd:COG4913 426 AEIASLERRKSNIPARLLALRDALA----------EALGLDE----------AELP-----FVGELIEVRPEEErwrgai 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1165 --VLWNQKETLTneakereagspVLPAHKDTALqEEVESL---TRVQWE-------SRKQSEKDRATLLSQMRVLESELE 1232
Cdd:COG4913 481 erVLGGFALTLL-----------VPPEHYAAAL-RWVNRLhlrGRLVYErvrtglpDPERPRLDPDSLAGKLDFKPHPFR 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1233 D---QLVQHRGCAQLAEEVATLKQQ-----LAALDKHLRSQRQfMDDQAAER---------EHEREEFQQEIQRLEGQLR 1295
Cdd:COG4913 549 AwleAELGRRFDYVCVDSPEELRRHpraitRAGQVKGNGTRHE-KDDRRRIRsryvlgfdnRAKLAALEAELAELEEELA 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1296 QAarprppgprDSQCVQLDEEVELLQEKLR--EKLDGFNELVIKKDFADQQLLIQEEEIKRLEETN---ASIQRQMVQLQ 1370
Cdd:COG4913 628 EA---------EERLEALEAELDALQERREalQRLAEYSWDEIDVASAEREIAELEAELERLDASSddlAALEEQLEELE 698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1371 EELEKQKKSMEELKEKEILKQENMGDLL-LTTVSRSGLDEAGcpmlPQGSSSRGPEAQPDVTERALLQHENEVVHRRNSE 1449
Cdd:COG4913 699 AELEELEEELDELKGEIGRLEKELEQAEeELDELQDRLEAAE----DLARLELRALLEERFAAALGDAVERELRENLEER 774
|
650
....*....|...
gi 1039732380 1450 IDELKSLIENLQE 1462
Cdd:COG4913 775 IDALRARLNRAEE 787
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
144-294 |
7.05e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 7.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 144 KEKETALTELREMLNGRRAQELALLQSRQQCELELLREQHAREKEEMALRSGQ--EAAELKEKLRSEMEKN-AQTIETLK 220
Cdd:COG4913 265 AAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARldALREELDELEAQIRGNgGDRLEQLE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 221 QD---WESERELCLENLRQ--------ELSLKH-QSEMEGLQSQFQKELSEQKVELEKIFQAKHEAEVSLKNLEAQHQAA 288
Cdd:COG4913 345 REierLERELEERERRRARleallaalGLPLPAsAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELREL 424
|
....*.
gi 1039732380 289 IKKLQE 294
Cdd:COG4913 425 EAEIAS 430
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2210-2484 |
8.13e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.97 E-value: 8.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2210 HQLRRQVELL---AYKVEQEKCIANEL---QKTLSKeqetasdvrKRLVVEQNAVQDLKSELHACKQENTSLLESLDKVQ 2283
Cdd:TIGR02168 196 NELERQLKSLerqAEKAERYKELKAELrelELALLV---------LRLEELREELEELQEELKEAEEELEELTAELQELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2284 QEVLRLRYGHvtwsycgtSSASAGRAVLDGKEKELKVVLEELESERGKGQALQAQQEEQQLRY---LQREGQSSRALEEL 2360
Cdd:TIGR02168 267 EKLEELRLEV--------SELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELeaqLEELESKLDELAEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 2361 KLSLEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELQKSLEAERSRSLELSEALqherlltEQ 2440
Cdd:TIGR02168 339 LAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL-------ER 411
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1039732380 2441 LSRNSQEACARQETQVQHALLRKLKAEKTRALELEAMLEKVQKQ 2484
Cdd:TIGR02168 412 LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEE 455
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1069-1385 |
8.88e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.75 E-value: 8.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1069 EREFRHRNEEMAQAMQKQQELLERLREEsaakdrlaleLHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQ 1148
Cdd:pfam12128 599 EEELRERLDKAEEALQSAREKQAAAEEQ----------LVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDK 668
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1149 LQQAarelltLKEEKSVLWNQKETLTNEAKEREAGspvlpaHKDtALQEEvesltrvqwesRKQSEKDRATLLSQMRVLE 1228
Cdd:pfam12128 669 KNKA------LAERKDSANERLNSLEAQLKQLDKK------HQA-WLEEQ-----------KEQKREARTEKQAYWQVVE 724
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1229 SELEDQLvqhrgcAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAARPRPPGPR-- 1306
Cdd:pfam12128 725 GALDAQL------ALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRyf 798
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 1307 DSQCVQLDEEVELLQEKLREKLDGFNELvikkdfaDQQLLIQEEEIKR----LEETNASIQRQMVQLQEELEKQKKSMEE 1382
Cdd:pfam12128 799 DWYQETWLQRRPRLATQLSNIERAISEL-------QQQLARLIADTKLrrakLEMERKASEKQQVRLSENLRGLRCEMSK 871
|
...
gi 1039732380 1383 LKE 1385
Cdd:pfam12128 872 LAT 874
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
73-399 |
9.22e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.56 E-value: 9.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 73 PSCSNTLEGTRGASAAQEQ----EDCELDVTDLQGQQQTQPPPPQTAHSL---ELEALRLSLNNMHTAQLELTQANLQKE 145
Cdd:PRK02224 455 PECGQPVEGSPHVETIEEDrervEELEAELEDLEEEVEEVEERLERAEDLveaEDRIERLEERREDLEELIAERRETIEE 534
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 146 KETALTELREmlngrRAQELallqsrqQCELELLREQhAREKEEMALRSGQEAAELKEKLrsemEKNAQTIETLKQDWES 225
Cdd:PRK02224 535 KRERAEELRE-----RAAEL-------EAEAEEKREA-AAEAEEEAEEAREEVAELNSKL----AELKERIESLERIRTL 597
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 226 ERELclENLRQELS-----LKHQSEMEGLQSQFQKELSEQKVELEKIFQAkheaevslknleaqhqAAIKKLQEDLQSEH 300
Cdd:PRK02224 598 LAAI--ADAEDEIErlrekREALAELNDERRERLAEKRERKRELEAEFDE----------------ARIEEAREDKERAE 659
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039732380 301 cQYLQDLEQKFREKEKAKEleletlqasyeDLkaqsQEEIRLLWSQLESMKTNREELNGSWDPVLAQASHLEELEHLRSG 380
Cdd:PRK02224 660 -EYLEQVEEKLDELREERD-----------DL----QAEIGAVENELEELEELRERREALENRVEALEALYDEAEELESM 723
|
330
....*....|....*....
gi 1039732380 381 FAQQQQQERAQHESELEHL 399
Cdd:PRK02224 724 YGDLRAELRQRNVETLERM 742
|
|
| |
