|
Name |
Accession |
Description |
Interval |
E-value |
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
150-915 |
0e+00 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 1143.40 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 150 LQAQLKELQRENDLLRKELDIKDSKLGSSMNSIKTFWSPELKKERVLRKEEAARMSVLKEQMRVSHEENQlldarrtkHL 229
Cdd:pfam10174 1 LQAQLRDLQRENELLRRELDIKESKLGSSMNSIKTFWSPELKKERALRKEEAARISVLKEQYRVTQEENQ--------HL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 230 QLTIQALQDELRTQRDLNHLLQQE---SGNRGAEHF-TIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQT 305
Cdd:pfam10174 73 QLTIQALQDELRAQRDLNQLLQQDfttSPVDGEDKFsTPELTEENFRRLQSEHERQAKELFLLRKTLEEMELRIETQKQT 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 306 LNARDESIKKLLEMLQSKGLPSKSLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELHRRSQLQPEPAKTKALQ 385
Cdd:pfam10174 153 LGARDESIKKLLEMLQSKGLPKKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELHRRNQLQPDPAKTKALQ 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 386 TVIEMKDTKIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKL 465
Cdd:pfam10174 233 TVIEMKDTKISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQTKL 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 466 ETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVK 545
Cdd:pfam10174 313 ETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVK 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 546 ERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIES 625
Cdd:pfam10174 393 ERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQREREDRERLEELES 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 626 FRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKAHNIEDDSRM 705
Cdd:pfam10174 473 LKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVRT 552
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 706 NPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELE----RHMKDQNKKVANLKYNQQLEKK 781
Cdd:pfam10174 553 NPEINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELEsltlRQMKEQNKKVANIKHGQQEMKK 632
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 782 KNAQLLEEVRRREDSMVDNSQHLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQE 861
Cdd:pfam10174 633 KGAQLLEEARRREDNLADNSQQLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQE 712
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....
gi 1039746081 862 ALLAAISEKDANIALLELSASKKKKTQEEVMALKREKDRLVHQLKQQTQNRMKL 915
Cdd:pfam10174 713 ALLAAISEKDANIALLELSSSKKKKTQEEVMALKREKDRLVHQLKQQTQNRMKL 766
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
191-897 |
2.52e-18 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 90.90 E-value: 2.52e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 191 KKERVLRKEEAARMSVLKEQMRVSHEENQLLDARRTKHLQLTIQALQDELRTQRDLNHLLQQESgnrgaehftielTEEN 270
Cdd:TIGR02169 171 KKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEA------------LERQ 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 271 FRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEmlqskglpskslEDDNERTRRMAEAESQVSHL 350
Cdd:TIGR02169 239 KEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE------------EEQLRVKEKIGELEAEIASL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 351 EVILDQKEKEnihLREELHRRSQLQPEPAKTKAlqtVIEMKDTKIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQI 430
Cdd:TIGR02169 307 ERSIAEKERE---LEDAEERLAKLEAEIDKLLA---EIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEF 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 431 EVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAkeqraaiLQTEVDALRLRLEEK 510
Cdd:TIGR02169 381 AETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINE-------LEEEKEDKALEIKKQ 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 511 ESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKD--------------- 575
Cdd:TIGR02169 454 EWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKAsiqgvhgtvaqlgsv 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 576 ------------------------------------------------RVKSLQTDSS---------------------- 585
Cdd:TIGR02169 534 geryataievaagnrlnnvvveddavakeaiellkrrkagratflplnKMRDERRDLSilsedgvigfavdlvefdpkye 613
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 586 --------------NTDTA--------LATLEEALSEKERII---ERLKEQRERDDRERLEEIESFRKENKDLKEKVNAL 640
Cdd:TIGR02169 614 pafkyvfgdtlvveDIEAArrlmgkyrMVTLEGELFEKSGAMtggSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSL 693
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 641 QAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKK-AHNIEDDSRMNPEFADRLKQLDKE 719
Cdd:TIGR02169 694 QSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSlEQEIENVKSELKELEARIEELEED 773
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 720 ASYYRDECGKAQAEVDRllEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVD 799
Cdd:TIGR02169 774 LHKLEEALNDLEARLSH--SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKS 851
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 800 NSQhlQIEELMNALEKTRQELDATKARLAstqqSLAEKEAHLANLRIERRKQLEEiLEMKQEALLAAISEKDANIALLEL 879
Cdd:TIGR02169 852 IEK--EIENLNGKKEELEEELEELEAALR----DLESRLGDLKKERDELEAQLRE-LERKIEELEAQIEKKRKRLSELKA 924
|
810
....*....|....*...
gi 1039746081 880 SASKKKKTQEEVMALKRE 897
Cdd:TIGR02169 925 KLEALEEELSEIEDPKGE 942
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
441-923 |
5.98e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 86.14 E-value: 5.98e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 441 KTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQ 520
Cdd:COG1196 252 EAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 521 LQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSE 600
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 601 KERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKL------KS 674
Cdd:COG1196 412 LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLeelaeaAA 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 675 LEIAIEQKKEECNKLEAQLKKAHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKA-QAEVDRLLEILKEVENEKNDKDK 753
Cdd:COG1196 492 RLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAAlQNIVVEDDEVAAAAIEYLKAAKA 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 754 KIAELERHMKDQNKKVANLKYNQQLEKKKNAQLLEEVR-------RREDSMVDNSQHLQIEELMNALEKTRQELDATKAR 826
Cdd:COG1196 572 GRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLReadaryyVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTL 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 827 LASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKDRLVHQLK 906
Cdd:COG1196 652 EGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLE 731
|
490
....*....|....*..
gi 1039746081 907 QQTQNRMKLMADNYDED 923
Cdd:COG1196 732 AEREELLEELLEEEELL 748
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
371-915 |
1.40e-16 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 84.69 E-value: 1.40e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 371 RSQLQPEPAKTKALQTVIEMKDTKIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQE 450
Cdd:TIGR04523 46 KNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVE 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 451 LSKKE--------------SELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALR---LRLEEKESF 513
Cdd:TIGR04523 126 LNKLEkqkkenkknidkflTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKnklLKLELLLSN 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 514 LNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALAT 593
Cdd:TIGR04523 206 LKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKE 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 594 LEEALSEKERIIERLKEQRERD-DRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRD--- 669
Cdd:TIGR04523 286 LEKQLNQLKSEISDLNNQKEQDwNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQrel 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 670 ----SKLKSLEIAIEQKKEECNKLEAQLKKAH-NIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEV 744
Cdd:TIGR04523 366 eekqNEIEKLKKENQSYKQEIKNLESQINDLEsKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDL 445
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 745 ENEKNDKDKKIAELERHMKDQNKKVANLKYnqqlEKKKNAQLLEEVRRREDSmvDNSQHLQIEELMNALEKTRQELDATK 824
Cdd:TIGR04523 446 TNQDSVKELIIKNLDNTRESLETQLKVLSR----SINKIKQNLEQKQKELKS--KEKELKKLNEEKKELEEKVKDLTKKI 519
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 825 ARLASTQQSLAEKEAHLANLRIERRKQLEEI-LEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKDRLVH 903
Cdd:TIGR04523 520 SSLKEKIEKLESEKKEKESKISDLEDELNKDdFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKK 599
|
570
....*....|..
gi 1039746081 904 QLKQQTQNRMKL 915
Cdd:TIGR04523 600 DLIKEIEEKEKK 611
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
370-901 |
1.67e-16 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 84.73 E-value: 1.67e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 370 RRSQLQPEPAKTKALQTVIEMKDTKIASLERNIRDLEDEVqmlkangvlntEDREEEIKQIEVYKSHSKFMKTKIDQLKQ 449
Cdd:PRK03918 177 RIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSEL-----------PELREELEKLEKEVKELEELKEEIEELEK 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 450 ELSKKESELLALQTKLETLSNQNSDCKQHIEVLKEsltaKEQRAailqTEVDALRLRLEEKESFLNKKTKQLQDLTEEKG 529
Cdd:PRK03918 246 ELESLEGSKRKLEEKIRELEERIEELKKEIEELEE----KVKEL----KELKEKAEEYIKLSEFYEEYLDELREIEKRLS 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 530 TLAGEIRDMK---DMLEVKERKINVLQKKIENLQEQLrDKDKQLTNLKDRVKSLQTDSSNTDTALATLE-EALSEKERII 605
Cdd:PRK03918 318 RLEEEINGIEeriKELEEKEERLEELKKKLKELEKRL-EELEERHELYEEAKAKKEELERLKKRLTGLTpEKLEKELEEL 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 606 ERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQ----------AELTE------KESSLIDLKEHASSLASAGlKRD 669
Cdd:PRK03918 397 EKAKEEIEEEISKITARIGELKKEIKELKKAIEELKkakgkcpvcgRELTEehrkelLEEYTAELKRIEKELKEIE-EKE 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 670 SKLKSLEIAIEQKKEECNKLEAQLKKAHNIED-DSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRL---LEILKEVE 745
Cdd:PRK03918 476 RKLRKELRELEKVLKKESELIKLKELAEQLKElEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLkkeLEKLEELK 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 746 NEKNDKDKKIAELERHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQIEElmNALEKTRQELDATKA 825
Cdd:PRK03918 556 KKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREE--KELKKLEEELDKAFE 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 826 RLASTQQSLAEKEAHLANLRI----ERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKDRL 901
Cdd:PRK03918 634 ELAETEKRLEELRKELEELEKkyseEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKEL 713
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
389-901 |
1.49e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.91 E-value: 1.49e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 389 EMKDTKIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEVykshskfMKTKIDQLKQELSKKESELLALQTKLETL 468
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAE-------LEAELEELRLELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 469 SNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERK 548
Cdd:COG1196 294 LAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 549 INVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRE---RDDRERLEEIES 625
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEeeeEALEEAAEEEAE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 626 FRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLAS-------------------------AGLKRDSKLKSLEIAIE 680
Cdd:COG1196 454 LEEEEEALLELLAELLEEAALLEAALAELLEELAEAAArllllleaeadyegflegvkaalllAGLRGLAGAVAVLIGVE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 681 QKKEECNKLEAQLKKAHNIEDDSRMNPEFADRLKQ----------------------------LDKEASYYRDECGKAQA 732
Cdd:COG1196 534 AAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAakagratflpldkiraraalaaalargaIGAAVDLVASDLREADA 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 733 EVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKK-----VANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQIE 807
Cdd:COG1196 614 RYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVtlegeGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 808 ELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALLELsaskkkkt 887
Cdd:COG1196 694 ELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL-------- 765
|
570
....*....|....
gi 1039746081 888 QEEVMALKREKDRL 901
Cdd:COG1196 766 ERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
441-772 |
6.78e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.72 E-value: 6.78e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 441 KTKIDQLKQELSKKESELLALQTKLETLSNQNSDckqhievLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQ 520
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEE-------LEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEER 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 521 LQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSE 600
Cdd:TIGR02168 749 IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 601 KERIIERLKEQRERDD---RERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEI 677
Cdd:TIGR02168 829 LERRIAATERRLEDLEeqiEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 678 AIEQKKEECNKLEAQLKKAHNieddsrmnpefadrlkqldkeasyyrdECGKAQAEVDRLLEILKE--------VENEKN 749
Cdd:TIGR02168 909 KRSELRRELEELREKLAQLEL---------------------------RLEGLEVRIDNLQERLSEeysltleeAEALEN 961
|
330 340
....*....|....*....|...
gi 1039746081 750 DKDKKIAELERHMKDQNKKVANL 772
Cdd:TIGR02168 962 KIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
140-837 |
1.47e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.56 E-value: 1.47e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 140 RQVRDSTMLDLQAQLKELQRENDLLRKELDIKDSKLGSSMNSIK--TFWSPELKKERVLRKEEAARMSVLKEQMRVSHEE 217
Cdd:TIGR02168 276 VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEelEAQLEELESKLDELAEELAELEEKLEELKEELES 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 218 -NQLLDARRTK--HLQLTIQALQDELRTQR-DLNHLLQQESGNRGaehfTIELTEENFRRLQAEHDRQAKELFLLRKTLE 293
Cdd:TIGR02168 356 lEAELEELEAEleELESRLEELEEQLETLRsKVAQLELQIASLNN----EIERLEARLERLEDRRERLQQEIEELLKKLE 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 294 EMELriETQKQTLNARDESIKKLLEMLQS--------KGLPSKSLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLR 365
Cdd:TIGR02168 432 EAEL--KELQAELEELEEELEELQEELERleealeelREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVK 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 366 EELHRRSQLqpePAKTKALQTVIEMKDTKIASLERnirDLEDEVQMLKangvlnTEDREEEIKQIEVYKSHSKFMKTKID 445
Cdd:TIGR02168 510 ALLKNQSGL---SGILGVLSELISVDEGYEAAIEA---ALGGRLQAVV------VENLNAAKKAIAFLKQNELGRVTFLP 577
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 446 QLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQlqDLT 525
Cdd:TIGR02168 578 LDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDG--DLV 655
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 526 EEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERII 605
Cdd:TIGR02168 656 RPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 606 ERLKEQRERddreRLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEhasslasaglkrdsKLKSLEIAIEQKKEE 685
Cdd:TIGR02168 736 ARLEAEVEQ----LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEA--------------EIEELEAQIEQLKEE 797
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 686 CNKLEAQLKKAHNIEddSRMNPEFAD---RLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHM 762
Cdd:TIGR02168 798 LKALREALDELRAEL--TLLNEEAANlreRLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEL 875
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039746081 763 KDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQhlQIEELMNALEKTRQELDATKARLASTQQSLAEK 837
Cdd:TIGR02168 876 EALLNERASLEEALALLRSELEELSEELRELESKRSELRR--ELEELREKLAQLELRLEGLEVRIDNLQERLSEE 948
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
258-921 |
1.99e-14 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 78.24 E-value: 1.99e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 258 GAEHFTIELTEENF------RRLQAEHDRQAKELFLLRKT-------LEEMEL---------RIETQKQTlNARDESIKK 315
Cdd:pfam15921 72 GKEHIERVLEEYSHqvkdlqRRLNESNELHEKQKFYLRQSvidlqtkLQEMQMerdamadirRRESQSQE-DLRNQLQNT 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 316 LLEMLQSKGLPSKSLEDDN---ERTRRMAEAESQVSH--LEVILDQKEKENIHLREelHRRSQLQPEPAKTKALQTVIEM 390
Cdd:pfam15921 151 VHELEAAKCLKEDMLEDSNtqiEQLRKMMLSHEGVLQeiRSILVDFEEASGKKIYE--HDSMSTMHFRSLGSAISKILRE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 391 KDTKIASLERNIRDLEDEVQMLKAngvlntedreEEIKQIEVykshskFMKTKIDQLKQELSKKESELLALQTKLETLSN 470
Cdd:pfam15921 229 LDTEISYLKGRIFPVEDQLEALKS----------ESQNKIEL------LLQQHQDRIEQLISEHEVEITGLTEKASSARS 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 471 QNSDCKQHIEVLKESltAKEQRAAILqtevdalrlrleekesflnkktKQLQDLTEEKGTLAGEIRDMKDMLEvkerkin 550
Cdd:pfam15921 293 QANSIQSQLEIIQEQ--ARNQNSMYM----------------------RQLSDLESTVSQLRSELREAKRMYE------- 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 551 vlqKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRER---DDRERLEEIESFR 627
Cdd:pfam15921 342 ---DKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRlwdRDTGNSITIDHLR 418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 628 KENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLK-KAHNIEDDSRMN 706
Cdd:pfam15921 419 RELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTaKKMTLESSERTV 498
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 707 PEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEkndkdkkiaelERHMKDQNKKVANLKYnQQLEKKKNAQL 786
Cdd:pfam15921 499 SDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNE-----------GDHLRNVQTECEALKL-QMAEKDKVIEI 566
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 787 LEEvrrredsmvdnsqhlQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMkqeallaa 866
Cdd:pfam15921 567 LRQ---------------QIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIREL-------- 623
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*....
gi 1039746081 867 isekDANIALLELSASKKKKTQEE----VMALKREKDRLVHQLKqQTQNRMKLMADNYD 921
Cdd:pfam15921 624 ----EARVSDLELEKVKLVNAGSErlraVKDIKQERDQLLNEVK-TSRNELNSLSEDYE 677
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
394-857 |
2.23e-14 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 77.77 E-value: 2.23e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 394 KIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEVYKSHskfmKTKIDQLKQELSKKESELLALQTKLETLSNQNS 473
Cdd:PRK02224 207 RLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEER----REELETLEAEIEDLRETIAETEREREELAEEVR 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 474 DCKQHIEVLKESLT--------------AKEQRAAILQTEVDALRLRLEEKESFLNKKTKQL--------------QDLT 525
Cdd:PRK02224 283 DLRERLEELEEERDdllaeaglddadaeAVEARREELEDRDEELRDRLEECRVAAQAHNEEAeslredaddleeraEELR 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 526 EEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERII 605
Cdd:PRK02224 363 EEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERV 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 606 ERLKEQRE--------------------RDDRERLEEIES----FRKENKDLKEKVNALQaELTEKESSLIDLKEHASSL 661
Cdd:PRK02224 443 EEAEALLEagkcpecgqpvegsphvetiEEDRERVEELEAeledLEEEVEEVEERLERAE-DLVEAEDRIERLEERREDL 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 662 ASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKAHNIEDDSRMNPE-FADRLKQLDKEasyyRDECGKAQAEVDRLLEI 740
Cdd:PRK02224 522 EELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEeAREEVAELNSK----LAELKERIESLERIRTL 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 741 LKEVEN------EKNDKDKKIAELERHMKDQNKKVANLKynQQLEKKKNAQLLEEVRRREDSMVDnsqhlQIEELMNALE 814
Cdd:PRK02224 598 LAAIADaedeieRLREKREALAELNDERRERLAEKRERK--RELEAEFDEARIEEAREDKERAEE-----YLEQVEEKLD 670
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 1039746081 815 KTRQELDATKARLASTQQSLAEkeahLANLRiERRKQLEEILE 857
Cdd:PRK02224 671 ELREERDDLQAEIGAVENELEE----LEELR-ERREALENRVE 708
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
337-646 |
3.35e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.40 E-value: 3.35e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 337 TRRMAEAESQVSHLEVILDQKEKENIHLREELH-RRSQLQPEPAKTKALQTVIEMKDTKIASLERNIRDLEDEVQMLKAN 415
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEELEqLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE 762
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 416 GVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLsnqnsdckqhievlKESLTAKEQRAAI 495
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLL--------------NEEAANLRERLES 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 496 LQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKD 575
Cdd:TIGR02168 829 LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039746081 576 RVKSLQTDSSNTDTALATLEEALSEKE----RIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTE 646
Cdd:TIGR02168 909 KRSELRRELEELREKLAQLELRLEGLEvridNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
207-879 |
5.93e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 76.63 E-value: 5.93e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 207 LKEQMRVSHEENQLLDARRTKHLQLT---IQALQDELRTQR----DLNHLLQQESGNRGAEHFTIELTEENFRRLQAEHD 279
Cdd:TIGR02168 205 LERQAEKAERYKELKAELRELELALLvlrLEELREELEELQeelkEAEEELEELTAELQELEEKLEELRLEVSELEEEIE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 280 RQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGlpsKSLEDDNERTRRMAEAESQVSHLEVILDQKEK 359
Cdd:TIGR02168 285 ELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELE---SKLDELAEELAELEEKLEELKEELESLEAELE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 360 ENIHLREELHRRSQlqpepaktkALQTVIEMKDTKIASLERNIRDLEDEVQMLKANgvLNTEDREEEIKQIEVYKSHSKF 439
Cdd:TIGR02168 362 ELEAELEELESRLE---------ELEEQLETLRSKVAQLELQIASLNNEIERLEAR--LERLEDRRERLQQEIEELLKKL 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 440 MKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFlnkkTK 519
Cdd:TIGR02168 431 EEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGF----SE 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 520 QLQDLTEEKGTLAGEIRDMKDMLEVKER-------------------------------------KINVL-------QKK 555
Cdd:TIGR02168 507 GVKALLKNQSGLSGILGVLSELISVDEGyeaaieaalggrlqavvvenlnaakkaiaflkqnelgRVTFLpldsikgTEI 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 556 IENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALA------TLEEALS------EKERII------------------ 605
Cdd:TIGR02168 587 QGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGgvlvvdDLDNALElakklrPGYRIVtldgdlvrpggvitggsa 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 606 ----ERLKEQRERDD-RERLEEIESfrkENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIE 680
Cdd:TIGR02168 667 ktnsSILERRREIEElEEKIEELEE---KIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVE 743
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 681 QKKEECNKLEAQLKKAHNIEDdsrmnpEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELER 760
Cdd:TIGR02168 744 QLEERIAQLSKELTELEAEIE------ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNE 817
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 761 HMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSqhLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAH 840
Cdd:TIGR02168 818 EAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA--AEIEELEELIEELESELEALLNERASLEEALALLRSE 895
|
730 740 750
....*....|....*....|....*....|....*....
gi 1039746081 841 LANLRIERRKQLEEILEMKQEALLAAISEKDANIALLEL 879
Cdd:TIGR02168 896 LEELSEELRELESKRSELRRELEELREKLAQLELRLEGL 934
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
146-907 |
6.28e-14 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 76.70 E-value: 6.28e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 146 TMLDLQAQLKELQRENDLL----RKELDIKDSKLGSSMNSIKtfwspELKKERVLRKEEAARMSVLKEQMRvsheenqll 221
Cdd:pfam15921 111 SVIDLQTKLQEMQMERDAMadirRRESQSQEDLRNQLQNTVH-----ELEAAKCLKEDMLEDSNTQIEQLR--------- 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 222 darrtkHLQLTIQALQDELRTqrdLNHLLQQESGNRGAEHFTieLTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIET 301
Cdd:pfam15921 177 ------KMMLSHEGVLQEIRS---ILVDFEEASGKKIYEHDS--MSTMHFRSLGSAISKILRELDTEISYLKGRIFPVED 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 302 QKQTLNArdESIKKLLEMLQSKGLPSKSLEDDNE-----RTRRMAEAESQV----SHLEVILDQKEKENI----HLREEL 368
Cdd:pfam15921 246 QLEALKS--ESQNKIELLLQQHQDRIEQLISEHEveitgLTEKASSARSQAnsiqSQLEIIQEQARNQNSmymrQLSDLE 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 369 HRRSQLQPEPAKTKAL----------QTVIEMKDTKIASLERN-----IRDLEDEVQMLKANGVLNTEDREEEIKQIEVY 433
Cdd:pfam15921 324 STVSQLRSELREAKRMyedkieelekQLVLANSELTEARTERDqfsqeSGNLDDQLQKLLADLHKREKELSLEKEQNKRL 403
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 434 KSHSKFMKTKIDQLKQELSKKESELLALQTKLETLsnqNSDCKQHIEVLKESLTAKEQRAAilqtEVDALRLRLEEKESF 513
Cdd:pfam15921 404 WDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAM---KSECQGQMERQMAAIQGKNESLE----KVSSLTAQLESTKEM 476
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 514 LNKktkQLQDLTEEKGTLAGEIRDMKDM---LEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQtdssNTDTA 590
Cdd:pfam15921 477 LRK---VVEELTAKKMTLESSERTVSDLtasLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLR----NVQTE 549
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 591 LATLEEALSEKERIIERLKEQrerddrerleeIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDS 670
Cdd:pfam15921 550 CEALKLQMAEKDKVIEILRQQ-----------IENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDA 618
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 671 KLKSLEIAIEQKKEECNKL-EAQLKKAHNIEDdsrmnpefadrLKQldkeasyyrdecgkaqaEVDRLLEILKEVENEKN 749
Cdd:pfam15921 619 KIRELEARVSDLELEKVKLvNAGSERLRAVKD-----------IKQ-----------------ERDQLLNEVKTSRNELN 670
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 750 DKDKKIAELERHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQHlqieeLMNALEKTRQELDATKARLAS 829
Cdd:pfam15921 671 SLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGH-----AMKVAMGMQKQITAKRGQIDA 745
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039746081 830 TQQSLAEKEAHLANLRIERRKQLEEILEMKQEaLLAAISEKDANIALLELSASKKKKTQEEVMALKREKDRLVHQLKQ 907
Cdd:pfam15921 746 LQSKIQFLEEAMTNANKEKHFLKEEKNKLSQE-LSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAE 822
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
496-866 |
9.83e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 75.87 E-value: 9.83e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 496 LQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIrdmkdmlEVKERKINVLQKKIENLQEQLRDKDKQLTNLKD 575
Cdd:TIGR02169 686 LKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEI-------EQLEQEEEKLKERLEELEEDLSSLEQEIENVKS 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 576 RvkslqtdssntdtaLATLEEALSEKERIIERLKEQRER-DDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLidl 654
Cdd:TIGR02169 759 E--------------LKELEARIEELEEDLHKLEEALNDlEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKL--- 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 655 kehasslasagLKRDSKLKSLEIAIEQKKEECNKLEAQLKK-AHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAE 733
Cdd:TIGR02169 822 -----------NRLTLEKEYLEKEIQELQEQRIDLKEQIKSiEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKE 890
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 734 VDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQIEELMNAL 813
Cdd:TIGR02169 891 RDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRAL 970
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 1039746081 814 E----KTRQELDATKARLastqQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAA 866
Cdd:TIGR02169 971 EpvnmLAIQEYEEVLKRL----DELKEKRAKLEEERKAILERIEEYEKKKREVFMEA 1023
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
395-696 |
2.39e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 74.71 E-value: 2.39e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 395 IASLERNIRDLEDEVQmlKANGVLNTEDREEEIkQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQnsd 474
Cdd:TIGR02168 195 LNELERQLKSLERQAE--KAERYKELKAELREL-ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEK--- 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 475 ckqhIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKER------- 547
Cdd:TIGR02168 269 ----LEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEelaelee 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 548 KINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFR 627
Cdd:TIGR02168 345 KLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIE 424
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 628 KENKDLKE-KVNALQAELTEKESSLIDLKEHASSLASAglkrdskLKSLEIAIEQKKEECNKLEAQLKKA 696
Cdd:TIGR02168 425 ELLKKLEEaELKELQAELEELEEELEELQEELERLEEA-------LEELREELEEAEQALDAAERELAQL 487
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
339-857 |
2.43e-13 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 74.31 E-value: 2.43e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 339 RMAEAESQVSHLEVILDQKEKENIHLREELhrrsqlqpepaktKALQTVI---EMKDTKIASLERNIRDLEDEVQmlkan 415
Cdd:PRK02224 207 RLNGLESELAELDEEIERYEEQREQARETR-------------DEADEVLeehEERREELETLEAEIEDLRETIA----- 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 416 gvlNTEDREEEIK-QIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAA 494
Cdd:PRK02224 269 ---ETEREREELAeEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 495 ILQTEVDALRLRLEEKEsflnkktkqlqdltEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLK 574
Cdd:PRK02224 346 SLREDADDLEERAEELR--------------EEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAE 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 575 DRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRE--------------------RDDRERLEEIES----FRKEN 630
Cdd:PRK02224 412 DFLEELREERDELREREAELEATLRTARERVEEAEALLEagkcpecgqpvegsphvetiEEDRERVEELEAeledLEEEV 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 631 KDLKEKVNALQaELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKAHNIEDDSRMNPE-F 709
Cdd:PRK02224 492 EEVEERLERAE-DLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEeA 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 710 ADRLKQLDKEasyyRDECGKAQAEVDRLLEILKEVEN------EKNDKDKKIAELERHMKD------------------- 764
Cdd:PRK02224 571 REEVAELNSK----LAELKERIESLERIRTLLAAIADaedeieRLREKREALAELNDERRErlaekrerkreleaefdea 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 765 -----QNKKVANLKYNQQLEKKknaqlLEEVRRREDS------MVDNSqhlqIEELmNALEKTRQELDATKARLASTQQS 833
Cdd:PRK02224 647 rieeaREDKERAEEYLEQVEEK-----LDELREERDDlqaeigAVENE----LEEL-EELRERREALENRVEALEALYDE 716
|
570 580
....*....|....*....|....
gi 1039746081 834 LAEKEAHLANLRIERRKQLEEILE 857
Cdd:PRK02224 717 AEELESMYGDLRAELRQRNVETLE 740
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
230-914 |
3.98e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 70.94 E-value: 3.98e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 230 QLTIQALQDELRTQRDLNHLLQQESGNRGAEHFTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNAR 309
Cdd:PTZ00121 1031 ELTEYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGK 1110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 310 DESIKKLLEMLQSKGLPSKSLE-DDNERTRRMAEAESQVSHLEVILDQKEKENihLREELHRRSQLQPEPAKTKALQTVI 388
Cdd:PTZ00121 1111 AEEARKAEEAKKKAEDARKAEEaRKAEDARKAEEARKAEDAKRVEIARKAEDA--RKAEEARKAEDAKKAEAARKAEEVR 1188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 389 EMKDTKIASLERNIRDLEDEVQMLKANGVLNTED--REEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLE 466
Cdd:PTZ00121 1189 KAEELRKAEDARKAEAARKAEEERKAEEARKAEDakKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARR 1268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 467 TLSNQNSDCKQHIEVLK--ESLTAKEQRAAILQTEVDALRLRLEEKesflnKKTKQLQDLTEEKGTLAGEIR----DMKD 540
Cdd:PTZ00121 1269 QAAIKAEEARKADELKKaeEKKKADEAKKAEEKKKADEAKKKAEEA-----KKADEAKKKAEEAKKKADAAKkkaeEAKK 1343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 541 MLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERL 620
Cdd:PTZ00121 1344 AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEA 1423
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 621 EEIESFRKENKDLKEKvnalqAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIaiEQKKEECNKLEAQLKKAHNIE 700
Cdd:PTZ00121 1424 KKKAEEKKKADEAKKK-----AEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEA--KKKAEEAKKADEAKKKAEEAK 1496
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 701 ---DDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELErhmKDQNKKVANLKYNQQ 777
Cdd:PTZ00121 1497 kkaDEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELK---KAEEKKKAEEAKKAE 1573
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 778 LEKKKNAQLLEEVRRREDSMVDNSQHLQIEELMNALEKTRQELDA-TKARLASTQQSLAEKEAHLANLRIERRKQLEEIL 856
Cdd:PTZ00121 1574 EDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAkIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELK 1653
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 1039746081 857 EMKQEALLAAISEKDaniallelSASKKKKTQEEVMALKREKDRLVHQLKQQTQNRMK 914
Cdd:PTZ00121 1654 KAEEENKIKAAEEAK--------KAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK 1703
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
586-901 |
1.43e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.93 E-value: 1.43e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 586 NTDTALATLEEALSEKERIIERLKEQRER---------------------DDRERLEEIESFRKENKDLKEKVNALQAEL 644
Cdd:TIGR02168 183 RTRENLDRLEDILNELERQLKSLERQAEKaerykelkaelrelelallvlRLEELREELEELQEELKEAEEELEELTAEL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 645 TEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKAH-NIEDDSRMNPEFADRLKQLDKEASYY 723
Cdd:TIGR02168 263 QELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLErQLEELEAQLEELESKLDELAEELAEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 724 RDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKYNQQLEKKKnaqlLEEVRRREDSMVDNSQH 803
Cdd:TIGR02168 343 EEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE----IERLEARLERLEDRRER 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 804 LQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLrIERRKQLEEILEMKQEALLAA---ISEKDANIALLELS 880
Cdd:TIGR02168 419 LQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERL-EEALEELREELEEAEQALDAAereLAQLQARLDSLERL 497
|
330 340
....*....|....*....|.
gi 1039746081 881 ASKKKKTQEEVMALKREKDRL 901
Cdd:TIGR02168 498 QENLEGFSEGVKALLKNQSGL 518
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
484-692 |
1.84e-11 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 67.10 E-value: 1.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 484 ESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQL 563
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 564 rdkDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRerddRERLEEIESFRKENKDLKEKVNALQAE 643
Cdd:COG4942 100 ---EAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLA----PARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1039746081 644 LTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQ 692
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
232-655 |
2.97e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 67.76 E-value: 2.97e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 232 TIQALQDELRTQRD-LNHLLQQESGNRGAEHFTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARD 310
Cdd:PRK02224 311 AVEARREELEDRDEeLRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELE 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 311 ESIKKLLEMLQSKGLPSKSLEDDNERTR-RMAEAESQVSHLEVILdQKEKENIHLREELHRRSQLqPE---PAKTKALQT 386
Cdd:PRK02224 391 EEIEELRERFGDAPVDLGNAEDFLEELReERDELREREAELEATL-RTARERVEEAEALLEAGKC-PEcgqPVEGSPHVE 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 387 VIEMKDTKIASLERNIRDLEDEVqmlkangvlntEDREEEIKQIEvykshskfmktkidqlkqELSKKESELLALQTKLE 466
Cdd:PRK02224 469 TIEEDRERVEELEAELEDLEEEV-----------EEVEERLERAE------------------DLVEAEDRIERLEERRE 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 467 TLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGE------IRDMKD 540
Cdd:PRK02224 520 DLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERieslerIRTLLA 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 541 MLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQT--DSSNTDTALATLEEALSEKERIIERLKEQRERDD-- 616
Cdd:PRK02224 600 AIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAefDEARIEEAREDKERAEEYLEQVEEKLDELREERDdl 679
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 1039746081 617 -------RERLEEIESFRKENKDLKEKVNALQA---ELTEKESSLIDLK 655
Cdd:PRK02224 680 qaeigavENELEELEELRERREALENRVEALEAlydEAEELESMYGDLR 728
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
227-869 |
6.35e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 66.63 E-value: 6.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 227 KHLQLTIQALQDELRTQRDLNHLLQQESGNRGAEHFTIELTEENFRRLQAEHD---RQAKELFLLRKTLEEMELRIETQK 303
Cdd:PRK03918 172 KEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEkleKEVKELEELKEEIEELEKELESLE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 304 QTLNARDESIKKLLEMLQSKGLPSKSLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELHRRSQlqpepaktka 383
Cdd:PRK03918 252 GSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEE---------- 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 384 lqtviemkdtKIASLERNIRDLEDEVQMLKangvlNTEDREEEI-KQIEVYKshskfmktKIDQLKQELSKKESELLALQ 462
Cdd:PRK03918 322 ----------EINGIEERIKELEEKEERLE-----ELKKKLKELeKRLEELE--------ERHELYEEAKAKKEELERLK 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 463 TKLETLSnqnsdckqhIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDml 542
Cdd:PRK03918 379 KRLTGLT---------PEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTE-- 447
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 543 EVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNtdtalatlEEALSEKERIIERLKEQRERDDRERLEE 622
Cdd:PRK03918 448 EHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKK--------ESELIKLKELAEQLKELEEKLKKYNLEE 519
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 623 IESFRKENKDLKEKVNALQAELTEKESSLIDLKEHasslasaglkrDSKLKSLEIAIEQKKEECNKLEAQLKKA--HNIE 700
Cdd:PRK03918 520 LEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEEL-----------KKKLAELEKKLDELEEELAELLKELEELgfESVE 588
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 701 DDSRmnpefadRLKQLDKeasYYRD--ECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKYNQQL 778
Cdd:PRK03918 589 ELEE-------RLKELEP---FYNEylELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSE 658
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 779 EKKKNAQLLEEVRRREDSMVDNsqhlQIEELMNALEKTRQELDATKARLASTQQslAEKEAHLANLRIERRKQL-EEILE 857
Cdd:PRK03918 659 EEYEELREEYLELSRELAGLRA----ELEELEKRREEIKKTLEKLKEELEEREK--AKKELEKLEKALERVEELrEKVKK 732
|
650
....*....|..
gi 1039746081 858 MKQEALLAAISE 869
Cdd:PRK03918 733 YKALLKERALSK 744
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
268-914 |
8.88e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 66.32 E-value: 8.88e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 268 EENFRRLQAEHDRQAKELFLLRKTleEMELRIETQKQTLNARD-ESIKKLLEMLQSKGLpSKSLEDDNERTRRMAEAESQ 346
Cdd:PTZ00121 1137 EDARKAEEARKAEDAKRVEIARKA--EDARKAEEARKAEDAKKaEAARKAEEVRKAEEL-RKAEDARKAEAARKAEEERK 1213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 347 VSHLEVILDQKEKENIHLREELHRRSQLQPEPAKTKALQTVIEMKDTKIASLERNIRDLEDEvQMLKANGVLNTED--RE 424
Cdd:PTZ00121 1214 AEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAE-EARKADELKKAEEkkKA 1292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 425 EEIKQIEVYKSHSKFMKTKIDQLKQELSKKESEllALQTKLETLSNQNSDCKQHIEVLK--ESLTAKEQRAAILQTEVDA 502
Cdd:PTZ00121 1293 DEAKKAEEKKKADEAKKKAEEAKKADEAKKKAE--EAKKKADAAKKKAEEAKKAAEAAKaeAEAAADEAEAAEEKAEAAE 1370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 503 LRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKinvlQKKIENLQEQLRDKDKqltnlKDRVKSLQT 582
Cdd:PTZ00121 1371 KKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAA----KKKADEAKKKAEEKKK-----ADEAKKKAE 1441
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 583 DSSNTDTALATLEEAlSEKERIIERLKEQRERDDRERLEE----IESFRKENKDLKEKVNALQAELTEKESSLIDLKEHA 658
Cdd:PTZ00121 1442 EAKKADEAKKKAEEA-KKAEEAKKKAEEAKKADEAKKKAEeakkADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEE 1520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 659 SSLASAGLKRDSKLKSLEIaieQKKEECNKLEaQLKKAHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKaQAEVDRLL 738
Cdd:PTZ00121 1521 AKKADEAKKAEEAKKADEA---KKAEEKKKAD-ELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK-KAEEARIE 1595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 739 EILKEVENEKNDK--DKKIAELERHMKDQNKKVANLKYNQQLEKKKNAqllEEVRRREDsmvdnsqhlqieelmnaLEKT 816
Cdd:PTZ00121 1596 EVMKLYEEEKKMKaeEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEA---EEKKKAEE-----------------LKKA 1655
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 817 RQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKdaniallelSASKKKKTQEEVMALKR 896
Cdd:PTZ00121 1656 EEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKK---------KEAEEKKKAEELKKAEE 1726
|
650
....*....|....*...
gi 1039746081 897 EKDRLVHQLKQQTQNRMK 914
Cdd:PTZ00121 1727 ENKIKAEEAKKEAEEDKK 1744
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
394-919 |
1.51e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 65.43 E-value: 1.51e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 394 KIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNS 473
Cdd:TIGR04523 41 KLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKN 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 474 DCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGE-------IRDMKDMLEVKE 546
Cdd:TIGR04523 121 KLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEklniqknIDKIKNKLLKLE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 547 RKINVLQKKIEN---LQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEAL----SEKERIIERLKEQRERDDR-- 617
Cdd:TIGR04523 201 LLLSNLKKKIQKnksLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLnqlkDEQNKIKKQLSEKQKELEQnn 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 618 -------ERLEEIESFRKENKDLKEKV--NALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNK 688
Cdd:TIGR04523 281 kkikeleKQLNQLKSEISDLNNQKEQDwnKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSE 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 689 LEAQLKKAHN-IEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNK 767
Cdd:TIGR04523 361 KQRELEEKQNeIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNS 440
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 768 KVANLKyNQQLEKKKNAQLLEEVRrredsmvdNSQHLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIE 847
Cdd:TIGR04523 441 EIKDLT-NQDSVKELIIKNLDNTR--------ESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEK 511
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039746081 848 RRKQLEEI--LEMKQEALLAAISEKDANIALLElSASKKKKTQEEVMALKREKDRLVHQLKQQTQNRMKLMADN 919
Cdd:TIGR04523 512 VKDLTKKIssLKEKIEKLESEKKEKESKISDLE-DELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQ 584
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
334-769 |
2.04e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 64.66 E-value: 2.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 334 NERTRRMAEAESQVSHLEVILDQKEKENIHLREELHRRSQlqpepaKTKALQTVIEMKDTKIASLERNIRDLEDEVQMLK 413
Cdd:TIGR04523 331 SQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQN------EIEKLKKENQSYKQEIKNLESQINDLESKIQNQE 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 414 angvlntEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELlalqtklETLSNQNSDCKQHIEVLKESLTAKEQRA 493
Cdd:TIGR04523 405 -------KLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEI-------KDLTNQDSVKELIIKNLDNTRESLETQL 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 494 AILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDmlevkerKINVLQKKIENLQEQLRDKDKQLTNL 573
Cdd:TIGR04523 471 KVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTK-------KISSLKEKIEKLESEKKEKESKISDL 543
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 574 KDRVKSLQTDSSNTDtalatLEEALSEKERIIERLKEQR---ERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESS 650
Cdd:TIGR04523 544 EDELNKDDFELKKEN-----LEKEIDEKNKEIEELKQTQkslKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKE 618
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 651 LIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKA-HNIEDDSRMNPEFADRLKQLDKEASYYRDECGK 729
Cdd:TIGR04523 619 LEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIiKKIKESKTKIDDIIELMKDWLKELSLHYKKYIT 698
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 1039746081 730 AQ---AEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKV 769
Cdd:TIGR04523 699 RMiriKDLPKLEEKYKEIEKELKKLDEFSKELENIIKNFNKKF 741
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
264-623 |
3.39e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 3.39e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 264 IELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLPSKSLEDDNERTRRmaEA 343
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSK--EL 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 344 ESQVSHLEVILDQKEKENIHLREELHRRSQLQPEPAKTKALqtviemkdtkIASLERNIRDLEDEVQMLKANGVLNTEDR 423
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE----------LKALREALDELRAELTLLNEEAANLRERL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 424 EEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQnsdckqhIEVLKESLTAKEQRAAILQTEVDAL 503
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESE-------LEALLNERASLEEALALLRSELEEL 899
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 504 RLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDML-EVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQT 582
Cdd:TIGR02168 900 SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIdNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLEN 979
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1039746081 583 DSSNT-DTALATLEEALSEKERIIErLKEQRE--RDDRERLEEI 623
Cdd:TIGR02168 980 KIKELgPVNLAAIEEYEELKERYDF-LTAQKEdlTEAKETLEEA 1022
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
262-695 |
3.41e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 64.27 E-value: 3.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 262 FTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQS--KGLPSKSLEDDNERTRr 339
Cdd:TIGR04523 204 SNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKikKQLSEKQKELEQNNKK- 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 340 MAEAESQVSHLEV-ILDQKEKENIHLREELHrrSQLQPEPAKTKALQTVIEMKDTKIASLERNIRDLEDEVQMLKANGVL 418
Cdd:TIGR04523 283 IKELEKQLNQLKSeISDLNNQKEQDWNKELK--SELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSE 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 419 NTEDREEEIKQIEV-------YKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQ 491
Cdd:TIGR04523 361 KQRELEEKQNEIEKlkkenqsYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNS 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 492 RAAILQTEVDALRLRLEEkesfLNKKTKQLQDLTEekgTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLT 571
Cdd:TIGR04523 441 EIKDLTNQDSVKELIIKN----LDNTRESLETQLK---VLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVK 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 572 NLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRErlEEIESFRKENKDLKEKVNALQAELTEKESSL 651
Cdd:TIGR04523 514 DLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLE--KEIDEKNKEIEELKQTQKSLKKKQEEKQELI 591
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 1039746081 652 IDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKK 695
Cdd:TIGR04523 592 DQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKN 635
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
148-760 |
3.85e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.19 E-value: 3.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 148 LDLQAQLKELQREndLLRKELDIKDSKLGSSMNSIKtfwspELKKERVLRKEEAARMSVLKEQMRVSHEENQLLDARRTK 227
Cdd:COG1196 216 RELKEELKELEAE--LLLLKLRELEAELEELEAELE-----ELEAELEELEAELAELEAELEELRLELEELELELEEAQA 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 228 HLQLTIQALQDELRTQRDLNHLLQQESGNRGAEHFTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLN 307
Cdd:COG1196 289 EEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 308 ARDESIKKLLEMLQSKglpsksLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELHRRSQlqpepAKTKALQTV 387
Cdd:COG1196 369 EAEAELAEAEEELEEL------AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE-----ALAELEEEE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 388 IEMKDTKIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEVYKSHSKfmKTKIDQLKQELSKKESELLALQTKLET 467
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE--AAARLLLLLEAEADYEGFLEGVKAALL 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 468 LSNQnsdCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKER 547
Cdd:COG1196 516 LAGL---RGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAAL 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 548 KINVLQKKIENLQEQLRDKDKQLTNLKDrvkSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFR 627
Cdd:COG1196 593 ARGAIGAAVDLVASDLREADARYYVLGD---TLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRE 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 628 KENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKAHNIEDDSRMNP 707
Cdd:COG1196 670 LLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLE 749
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 708 EFADRLKQLDKEASYYRDECGKAQAEVDRL-------LEILKEVENEKNDKDKKIAELER 760
Cdd:COG1196 750 EEALEELPEPPDLEELERELERLEREIEALgpvnllaIEEYEELEERYDFLSEQREDLEE 809
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
298-919 |
4.38e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 4.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 298 RIETQKQtLNARDESIKKLLEMLQSKGLPSKSLEDDNERTRRMAEAESQVSHLEVILDQKEKENihLREELHRrsqlqpe 377
Cdd:TIGR02168 174 RKETERK-LERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEE--LREELEE------- 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 378 paktkaLQTVIEMKDTKIASLERNIRDLEDEVQmlkangVLNTEDREEEiKQIEVYKSHSKFMKTKIDQLKQELSKKESE 457
Cdd:TIGR02168 244 ------LQEELKEAEEELEELTAELQELEEKLE------ELRLEVSELE-EEIEELQKELYALANEISRLEQQKQILRER 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 458 LLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRD 537
Cdd:TIGR02168 311 LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQ 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 538 MkdmlevkERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTAL---------ATLEEALSEKERIIERL 608
Cdd:TIGR02168 391 L-------ELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKElqaeleeleEELEELQEELERLEEAL 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 609 KEQRERDdRERLEEIESFRKENKDLKEKVNALQAELTEKES---SLIDLKEHASSLA------SAGLKRDSKL-KSLEIA 678
Cdd:TIGR02168 464 EELREEL-EEAEQALDAAERELAQLQARLDSLERLQENLEGfseGVKALLKNQSGLSgilgvlSELISVDEGYeAAIEAA 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 679 IE--------QKKEECNKLEAQLKKAH---------NIEDDSRMNPEFADRLKQLDKEASYYRD---ECGKAQAEVDRLL 738
Cdd:TIGR02168 543 LGgrlqavvvENLNAAKKAIAFLKQNElgrvtflplDSIKGTEIQGNDREILKNIEGFLGVAKDlvkFDPKLRKALSYLL 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 739 EILKEVEN--EKNDKDKKIAELERHMKDQNKKV---------ANLKYNQQLEKKKNaqlLEEVRRredsmvdnsqhlQIE 807
Cdd:TIGR02168 623 GGVLVVDDldNALELAKKLRPGYRIVTLDGDLVrpggvitggSAKTNSSILERRRE---IEELEE------------KIE 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 808 ELMNALEKTRQELDATKARLASTQQ--SLAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKK 885
Cdd:TIGR02168 688 ELEEKIAELEKALAELRKELEELEEelEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767
|
650 660 670
....*....|....*....|....*....|....
gi 1039746081 886 KTQEEVMALKREKDRLVHQLKQQTQNRMKLMADN 919
Cdd:TIGR02168 768 ERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL 801
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
464-915 |
5.16e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 63.52 E-value: 5.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 464 KLETLSNQNSDCKQHIE-VLKESLTAKEQ-RAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDM 541
Cdd:PRK02224 163 KLEEYRERASDARLGVErVLSDQRGSLDQlKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEV 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 542 LEVKERK---INVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQ----TDSSNTDTALATLEEALSEKERIIERLKEQRER 614
Cdd:PRK02224 243 LEEHEERreeLETLEAEIEDLRETIAETEREREELAEEVRDLRerleELEEERDDLLAEAGLDDADAEAVEARREELEDR 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 615 DD--RERLEE----IESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNK 688
Cdd:PRK02224 323 DEelRDRLEEcrvaAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGD 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 689 LEAQLKKAhniEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILK------EVENEK-----NDKDKKIAE 757
Cdd:PRK02224 403 APVDLGNA---EDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKcpecgqPVEGSPhvetiEEDRERVEE 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 758 LERHMKDQNKKVANLkyNQQLEKKKNAQLLEEVRRREDSMVDNSQHLqIEELMNALEKTRQELDATKARLASTQQSLAEK 837
Cdd:PRK02224 480 LEAELEDLEEEVEEV--EERLERAEDLVEAEDRIERLEERREDLEEL-IAERRETIEEKRERAEELRERAAELEAEAEEK 556
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039746081 838 EAHLANLRIERRKQLEEILEMKQEalLAAISEKDANIALLELSASKKKKTQEEVMALkreKDRLVHQLKQQTQNRMKL 915
Cdd:PRK02224 557 REAAAEAEEEAEEAREEVAELNSK--LAELKERIESLERIRTLLAAIADAEDEIERL---REKREALAELNDERRERL 629
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
273-919 |
5.19e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 5.19e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 273 RLQAEhdrQAKELFLLRKTLEEMELRIET-QKQTLNARDESIKKLLEMLQskglpskslEDDNERTRRMAEAESQVSHLE 351
Cdd:TIGR02168 206 ERQAE---KAERYKELKAELRELELALLVlRLEELREELEELQEELKEAE---------EELEELTAELQELEEKLEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 352 VILDQKEKENIHLREELHRRSQLQPE--------PAKTKALQTVIEMKDTKIASLERNIRDLEDEVQMLKANGVLNTEDR 423
Cdd:TIGR02168 274 LEVSELEEEIEELQKELYALANEISRleqqkqilRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 424 EEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQnsdckqhIEVLKESLTAKEQRAAILQTEVDAL 503
Cdd:TIGR02168 354 ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE-------IERLEARLERLEDRRERLQQEIEEL 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 504 RLRLEEKEsflnkktkqLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTD 583
Cdd:TIGR02168 427 LKKLEEAE---------LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERL 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 584 SSNTDTALATLEEALSEKERIierlkeqreRDDRERLEEIESFRKENKDLKEKV--NALQAELTEKESSLID----LKEH 657
Cdd:TIGR02168 498 QENLEGFSEGVKALLKNQSGL---------SGILGVLSELISVDEGYEAAIEAAlgGRLQAVVVENLNAAKKaiafLKQN 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 658 ASSLAS---AGLKRDSKLKSLEIAIEQKKE-------ECNKLEAQLKKA-HNIEDDSRMNPEFADRLKQLDKEASYYR-- 724
Cdd:TIGR02168 569 ELGRVTflpLDSIKGTEIQGNDREILKNIEgflgvakDLVKFDPKLRKAlSYLLGGVLVVDDLDNALELAKKLRPGYRiv 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 725 ---------------DECGKAQAEVDRLLEIlKEVENEKNDKDKKIAELERHMKDQNKKVANLKYN-QQLEKKKNAQLLE 788
Cdd:TIGR02168 649 tldgdlvrpggvitgGSAKTNSSILERRREI-EELEEKIEELEEKIAELEKALAELRKELEELEEElEQLRKELEELSRQ 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 789 EVRRREDSMVDNSQHLQIEELMNALEKTRQELDA----TKARLASTQQSLAEKEAHLANLRIERRKQLEEIlemkqEALL 864
Cdd:TIGR02168 728 ISALRKDLARLEAEVEQLEERIAQLSKELTELEAeieeLEERLEEAEEELAEAEAEIEELEAQIEQLKEEL-----KALR 802
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 1039746081 865 AAISEKDANIALLELSASKKKKTQEEVMALKREKDRLVHQLKQQTQNRMKLMADN 919
Cdd:TIGR02168 803 EALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESL 857
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
187-825 |
6.81e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.62 E-value: 6.81e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 187 SPELKKERVLRKEEAARMSvlkEQMRVSHEENQLLDARRTKHLQLTIQALQDELRTQRdlnhlLQQESGNRGAEHFTIEL 266
Cdd:PTZ00121 1190 AEELRKAEDARKAEAARKA---EEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKK-----AEEERNNEEIRKFEEAR 1261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 267 TEENFRR---LQAEHDRQAKELFLLRKTLEEMELRIETQKQTLnarDESIKKLLEMLQSKGLPSKSLEDDN--ERTRRMA 341
Cdd:PTZ00121 1262 MAHFARRqaaIKAEEARKADELKKAEEKKKADEAKKAEEKKKA---DEAKKKAEEAKKADEAKKKAEEAKKkaDAAKKKA 1338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 342 EAESQVSHLEVILDQKEKENIHLREELHRRSQLQPEPAKTKALQTVIEMKDTKIA-SLERNIRDLEDEVQMLKANGVLNT 420
Cdd:PTZ00121 1339 EEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAdEAKKKAEEDKKKADELKKAAAAKK 1418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 421 EDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESEllalQTKLETLSNQNSDCKQHIEVLKESLTAKE-----QRAAI 495
Cdd:PTZ00121 1419 KADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEE----AKKAEEAKKKAEEAKKADEAKKKAEEAKKadeakKKAEE 1494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 496 LQTEVDALRLRLEEKE-------SFLNKKTKQLQDLTE----EKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLR 564
Cdd:PTZ00121 1495 AKKKADEAKKAAEAKKkadeakkAEEAKKADEAKKAEEakkaDEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEE 1574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 565 DKDKQLTNLK-----DRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNA 639
Cdd:PTZ00121 1575 DKNMALRKAEeakkaEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKK 1654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 640 LQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEA-------QLKKAHNIEDDSRMNPEFADR 712
Cdd:PTZ00121 1655 AEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEElkkkeaeEKKKAEELKKAEEENKIKAEE 1734
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 713 LKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDK-KIAELERHMKDQNKKVANLKYNQQLEKKKNAQLLEEVR 791
Cdd:PTZ00121 1735 AKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKeKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGG 1814
|
650 660 670
....*....|....*....|....*....|....
gi 1039746081 792 RREDSMVDNSQHLQIEELMNALEKTRQELDATKA 825
Cdd:PTZ00121 1815 KEGNLVINDSKEMEDSAIKEVADSKNMQLEEADA 1848
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
591-901 |
7.71e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.16 E-value: 7.71e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 591 LATLEEALSEKERIIERLKEQRERDDR------ERLEEIESFRKEnKDLKEKVNALQAELTEKESSLI--DLKEHASSLA 662
Cdd:TIGR02169 162 IAGVAEFDRKKEKALEELEEVEENIERldliidEKRQQLERLRRE-REKAERYQALLKEKREYEGYELlkEKEALERQKE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 663 saglKRDSKLKSLEIAIEQKKEECNKLEAQLkkaHNIEDDSRmnpEFADRLKQL-DKEASYYRDECGKAQAEVDRLLEIL 741
Cdd:TIGR02169 241 ----AIERQLASLEEELEKLTEEISELEKRL---EEIEQLLE---ELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSI 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 742 KEVENEKNDKDKKIAELERHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQhlQIEELMNALEKTRQELD 821
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRA--ELEEVDKEFAETRDELK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 822 ATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQE------ALLAAISEKDANIALLELSASKKKKTQEEVMALK 895
Cdd:TIGR02169 389 DYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAiagieaKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE 468
|
....*.
gi 1039746081 896 REKDRL 901
Cdd:TIGR02169 469 QELYDL 474
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
441-649 |
1.41e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 61.32 E-value: 1.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 441 KTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQ 520
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 521 LQDL------TEEKGTL-----AGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDT 589
Cdd:COG4942 106 LAELlralyrLGRQPPLalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEE 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 590 ALATLEEALSEKERIIERLKEQRERDDrerlEEIESFRKENKDLKEKVNALQAELTEKES 649
Cdd:COG4942 186 ERAALEALKAERQKLLARLEKELAELA----AELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
292-871 |
3.84e-09 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 60.69 E-value: 3.84e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 292 LEEMELRIETQKQTLNARDESIKKLLEMLQSKGLP----SKSLEDDNERTRRMaeaESQVSHLEVILDQKEKENIHLREE 367
Cdd:PRK01156 164 LERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLEleniKKQIADDEKSHSIT---LKEIERLSIEYNNAMDDYNNLKSA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 368 LHRRSQL-------QPEPAKTKALQTVIEMKDTKIASLERNIRDLEDEVQMLKANGVLnteDREEEIKQIEVYKSHSKFM 440
Cdd:PRK01156 241 LNELSSLedmknryESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYIN---DYFKYKNDIENKKQILSNI 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 441 KTKIDQLkQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESltakEQRAAILQTEVDALRLRLEEKESFLNKKTKQ 520
Cdd:PRK01156 318 DAEINKY-HAIIKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGY----EMDYNSYLKSIESLKKKIEEYSKNIERMSAF 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 521 LQDLTEEKGTLAGEIRDMKDMLEVK----ERKINVLQKKIENLQEQLRDKDKQLTNLKDRVK------SLQTDSSNT--- 587
Cdd:PRK01156 393 ISEILKIQEIDPDAIKKELNEINVKlqdiSSKVSSLNQRIRALRENLDELSRNMEMLNGQSVcpvcgtTLGEEKSNHiin 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 588 --DTALATLEEALSEKERIIERLKEQReRDDRERLEEIEsfrkenkdlKEKVNALQAE---LTEKESSLIDLKEHASSLA 662
Cdd:PRK01156 473 hyNEKKSRLEEKIREIEIEVKDIDEKI-VDLKKRKEYLE---------SEEINKSINEynkIESARADLEDIKIKINELK 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 663 SAGLKR---DSKLKSLEIAI-EQKKEECNKLEAQLKKAhNIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLL 738
Cdd:PRK01156 543 DKHDKYeeiKNRYKSLKLEDlDSKRTSWLNALAVISLI-DIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSI 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 739 EILKEVENEKNDKDKKIAELERHMKDQNKKVANLKynQQLEKKKNaqlleevrRREDSMVDNSQHLQIEELMNALEKTRQ 818
Cdd:PRK01156 622 REIENEANNLNNKYNEIQENKILIEKLRGKIDNYK--KQIAEIDS--------IIPDLKEITSRINDIEDNLKKSRKALD 691
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 1039746081 819 ELDATKARLASTQQSLAEKEAHLANLRIERRKQLEeilemKQEALLAAISEKD 871
Cdd:PRK01156 692 DAKANRARLESTIEILRTRINELSDRINDINETLE-----SMKKIKKAIGDLK 739
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
511-696 |
4.70e-09 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 59.46 E-value: 4.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 511 ESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLT-----------NLKDRVKS 579
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAeaeaeieerreELGERARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 580 LQTDSSNTDTALATLE----EALSEKERIIERLKEQrerdDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLK 655
Cdd:COG3883 95 LYRSGGSVSYLDVLLGsesfSDFLDRLSALSKIADA----DADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAK 170
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1039746081 656 EhasSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKA 696
Cdd:COG3883 171 A---ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAA 208
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
712-907 |
9.63e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 58.62 E-value: 9.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 712 RLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKYNQQLEKKKNAQLLEEVR 791
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 792 RREDSMVDNSQHLQIEELMNA------------LEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEiLEMK 859
Cdd:COG4942 108 ELLRALYRLGRQPPLALLLSPedfldavrrlqyLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAE-LEEE 186
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1039746081 860 QEALLAAISEKDANIALLElsaSKKKKTQEEVMALKREKDRLVHQLKQ 907
Cdd:COG4942 187 RAALEALKAERQKLLARLE---KELAELAAELAELQQEAEELEALIAR 231
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
440-642 |
1.24e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 59.16 E-value: 1.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 440 MKTKIDQLK---QELSKKESELLALQTKLETLSNQNSDCKQHIEvLKESLTAKEQRAAIL-----QTEVDALRLRLEEKE 511
Cdd:COG4913 223 TFEAADALVehfDDLERAHEALEDAREQIELLEPIRELAERYAA-ARERLAELEYLRAALrlwfaQRRLELLEAELEELR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 512 SFLNKKTKQLQDLTEEKGTLAGEIRDMK-DMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTA 590
Cdd:COG4913 302 AELARLEAELERLEARLDALREELDELEaQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEE 381
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1039746081 591 LATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQA 642
Cdd:COG4913 382 FAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
139-611 |
1.43e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 58.98 E-value: 1.43e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 139 LRQVRD--STMLDLQAQLKELQR----ENDLLRKELDIKDSKLGSSMNSIKTFWSPELKKERVLRKEeAARMSVLKEQMR 212
Cdd:pfam15921 316 MRQLSDleSTVSQLRSELREAKRmyedKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKL-LADLHKREKELS 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 213 VSHEENQLLDARRTKHlQLTIQALQDEL--------RTQRDLNHLLQQESGNRGAEHFTIELTEENFRRLQAEHDRQAKE 284
Cdd:pfam15921 395 LEKEQNKRLWDRDTGN-SITIDHLRRELddrnmevqRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLEST 473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 285 LFLLRKTLEEMElrieTQKQTLNARDESIKKLLEMLQskglpsksleddnERTRRMAEAESQVSHLEVILDQKEKENIHL 364
Cdd:pfam15921 474 KEMLRKVVEELT----AKKMTLESSERTVSDLTASLQ-------------EKERAIEATNAEITKLRSRVDLKLQELQHL 536
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 365 REElhrRSQLQPEPAKTKALQTVIEMKDTKIASLERNIRDLEDEV-QMLKANGVLNTEDR--EEEIKQIEVYKSHSKFMK 441
Cdd:pfam15921 537 KNE---GDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVgQHGRTAGAMQVEKAqlEKEINDRRLELQEFKILK 613
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 442 TKIDQLKQELSKKESELLALQTKL------------------ETLSNQNSDCKQHI-------EVLKESLTAKEQRaaiL 496
Cdd:pfam15921 614 DKKDAKIRELEARVSDLELEKVKLvnagserlravkdikqerDQLLNEVKTSRNELnslsedyEVLKRNFRNKSEE---M 690
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 497 QTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDR 576
Cdd:pfam15921 691 ETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEE 770
|
490 500 510
....*....|....*....|....*....|....*...
gi 1039746081 577 VKSLQTDSSNTDT---ALATLEEALSEKERiieRLKEQ 611
Cdd:pfam15921 771 KNKLSQELSTVATeknKMAGELEVLRSQER---RLKEK 805
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
209-799 |
3.46e-08 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 57.81 E-value: 3.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 209 EQMRVSHEENQLLDARRTKHLQLTIQALQDELRTQRDLNHLLQQESGNRGAEHFTIELTEENFRRLQAEHDRQAKELFLL 288
Cdd:pfam05483 222 EKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDI 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 289 RKTLEEMELRIETQKQTLNARDESIKKLLEmlqskglpsksleddnERTRRMAEAESQVSHLEVILDQKEKENIHLrEEL 368
Cdd:pfam05483 302 KMSLQRSMSTQKALEEDLQIATKTICQLTE----------------EKEAQMEELNKAKAAHSFVVTEFEATTCSL-EEL 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 369 HRRSQLQPEPAKTKALQTVIEmkdtkiasLERNIRDLEDEVQMLKangvlNTEDREEEIKQIEVYKSHSKFMKTKIDQLK 448
Cdd:pfam05483 365 LRTEQQRLEKNEDQLKIITME--------LQKKSSELEEMTKFKN-----NKEVELEELKKILAEDEKLLDEKKQFEKIA 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 449 QELSKKESELLALqtkLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEK 528
Cdd:pfam05483 432 EELKGKEQELIFL---LQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEA 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 529 GTLAGEIRDMKDMLEVKERKINVLQKKIENLQE---QLRDK----DKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEK 601
Cdd:pfam05483 509 SDMTLELKKHQEDIINCKKQEERMLKQIENLEEkemNLRDElesvREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQ 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 602 ERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKEsslIDLKEHASSLASAGLKRDSKLKSLEIAIEQ 681
Cdd:pfam05483 589 MKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYE---IKVNKLELELASAKQKFEEIIDNYQKEIED 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 682 KKEECNKLEAQLKKAHNIED---------DSRMNPEFADRLKQLDKEASYYrdecGKAQAEVDRLLEILKEVENEKNDKD 752
Cdd:pfam05483 666 KKISEEKLLEEVEKAKAIADeavklqkeiDKRCQHKIAEMVALMEKHKHQY----DKIIEERDSELGLYKNKEQEQSSAK 741
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 1039746081 753 kkiAELERHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVD 799
Cdd:pfam05483 742 ---AALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTAILKD 785
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
441-667 |
3.80e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.70 E-value: 3.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 441 KTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQ 520
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRA 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 521 LQDL-TEEKGTLAGEIRDMKDMLevkeRKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSsntdTALATLEEALS 599
Cdd:COG4942 113 LYRLgRQPPLALLLSPEDFLDAV----RRLQYLKYLAPARREQAEELRADLAELAALRAELEAER----AELEALLAELE 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039746081 600 EKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLK 667
Cdd:COG4942 185 EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALK 252
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
518-861 |
5.07e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 56.95 E-value: 5.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 518 TKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEA 597
Cdd:TIGR04523 39 EKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQ 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 598 LSEKERIIERLKEQRERDDRER---LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKS 674
Cdd:TIGR04523 119 KNKLEVELNKLEKQKKENKKNIdkfLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLK 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 675 LEI---AIEQKKEECNKLEAQlkkahnIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDK 751
Cdd:TIGR04523 199 LELllsNLKKKIQKNKSLESQ------ISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEK 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 752 DKKIAELERHMKDQNKKVANLK-----YNQQLEKKKNAQLLEEVRRREDSMVD-NSQHLQIEELMNALEKTRQELDATKA 825
Cdd:TIGR04523 273 QKELEQNNKKIKELEKQLNQLKseisdLNNQKEQDWNKELKSELKNQEKKLEEiQNQISQNNKIISQLNEQISQLKKELT 352
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1039746081 826 RLASTQQS----LAEKEAHLANLRIERRKQLEEILEMKQE 861
Cdd:TIGR04523 353 NSESENSEkqreLEEKQNEIEKLKKENQSYKQEIKNLESQ 392
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
421-905 |
8.22e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.46 E-value: 8.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 421 EDREEEIKQIE-VYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTE 499
Cdd:COG4913 245 EDAREQIELLEpIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 500 VDALRLRLeekesfLNKKTKQLQDLTEekgtlagEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKS 579
Cdd:COG4913 325 LDELEAQI------RGNGGDRLEQLER-------EIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 580 LQTDSSntdTALATLEEALSEKERIIERLKEQRerddRERLEEIESFRKENKDLKEKV----NALQAELTEKESS----- 650
Cdd:COG4913 392 LLEALE---EELEALEEALAEAEAALRDLRREL----RELEAEIASLERRKSNIPARLlalrDALAEALGLDEAElpfvg 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 651 -LIDLKEHASS--------LASAGL-------------------KRDSKLKSLEIAIEQKKEECNKLEAQ-----LK-KA 696
Cdd:COG4913 465 eLIEVRPEEERwrgaiervLGGFALtllvppehyaaalrwvnrlHLRGRLVYERVRTGLPDPERPRLDPDslagkLDfKP 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 697 HNIED--DSRMNPEFA----DRLKQLDKEA-----------SYYRDECGK-------------AQAEVDRLLEILKEVEN 746
Cdd:COG4913 545 HPFRAwlEAELGRRFDyvcvDSPEELRRHPraitragqvkgNGTRHEKDDrrrirsryvlgfdNRAKLAALEAELAELEE 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 747 EKNDKDKKIAELERHMKDQNKKVANLKYNQQL--EKKKNAQLLEEVRRRED--SMVDNSqHLQIEELMNALEKTRQELDA 822
Cdd:COG4913 625 ELAEAEERLEALEAELDALQERREALQRLAEYswDEIDVASAEREIAELEAelERLDAS-SDDLAALEEQLEELEAELEE 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 823 TKARLASTQQSLAEKEAHLANLRIER---RKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKD 899
Cdd:COG4913 704 LEEELDELKGEIGRLEKELEQAEEELdelQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLN 783
|
....*.
gi 1039746081 900 RLVHQL 905
Cdd:COG4913 784 RAEEEL 789
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
573-816 |
8.65e-08 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 56.18 E-value: 8.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 573 LKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLI 652
Cdd:PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 653 DLKEHAsslasaglkrdSKLKSLEIAIEQKKEECNKLEAQLKKAH-------NIEDDSRMNPEFADRLKQLDKEasyyrd 725
Cdd:PHA02562 252 DPSAAL-----------NKLNTAAAKIKSKIEQFQKVIKMYEKGGvcptctqQISEGPDRITKIKDKLKELQHS------ 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 726 ecgkaqaevdrlLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQhlQ 805
Cdd:PHA02562 315 ------------LEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAE--E 380
|
250
....*....|.
gi 1039746081 806 IEELMNALEKT 816
Cdd:PHA02562 381 LAKLQDELDKI 391
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
151-818 |
1.22e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 56.21 E-value: 1.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 151 QAQLKELQRENDLLRKELDIKDSKLGSSMNS----IKTFWSPELKKERVLRKEEAARMSvlkEQMRVSHEENQLLDARRT 226
Cdd:TIGR00606 425 QEQADEIRDEKKGLGRTIELKKEILEKKQEElkfvIKELQQLEGSSDRILELDQELRKA---ERELSKAEKNSLTETLKK 501
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 227 KHLQLTIQALqDELRTQRDLNHLLQQESGNRGAEHFTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKqTL 306
Cdd:TIGR00606 502 EVKSLQNEKA-DLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLED-WL 579
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 307 NARDESIKKLLEMLQSKGLPSKSLEDDNERTRRMAEA-ESQVSHLEVIL------DQKEKENIHLREELHR-RSQLQPEP 378
Cdd:TIGR00606 580 HSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESkEEQLSSYEDKLfdvcgsQDEESDLERLKEEIEKsSKQRAMLA 659
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 379 AKTKALQTVIEMKDTKIAS-------LERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQEL 451
Cdd:TIGR00606 660 GATAVYSQFITQLTDENQSccpvcqrVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSII 739
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 452 SKKESELLALQTKLETLSNQNSDCKQHI---EVLKESLTAKEQRAAILQTEV---DALRLRLEEKESFLNKKTKQLQ--D 523
Cdd:TIGR00606 740 DLKEKEIPELRNKLQKVNRDIQRLKNDIeeqETLLGTIMPEEESAKVCLTDVtimERFQMELKDVERKIAQQAAKLQgsD 819
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 524 LTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKER 603
Cdd:TIGR00606 820 LDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQS 899
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 604 IIERLKEQR----------ERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKrdsklk 673
Cdd:TIGR00606 900 LIREIKDAKeqdspletflEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLK------ 973
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 674 sleiaieQKKEECNKLEAQLKKahNIEDDSRMNPEFadRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDK 753
Cdd:TIGR00606 974 -------QKETELNTVNAQLEE--CEKHQEKINEDM--RLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLK 1042
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039746081 754 KIAELE-RHMKDQNKKVANlkyNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQIEELMNALEKTRQ 818
Cdd:TIGR00606 1043 EMGQMQvLQMKQEHQKLEE---NIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYRE 1105
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
441-650 |
1.26e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 55.22 E-value: 1.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 441 KTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQ 520
Cdd:COG3883 22 QKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSGGS 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 521 LQDLT-----EEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQtdssntdTALATLE 595
Cdd:COG3883 102 VSYLDvllgsESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELE-------AAKAELE 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1039746081 596 EALSEKERIIERLKEQRerddRERLEEIESFRKENKDLKEKVNALQAELTEKESS 650
Cdd:COG3883 175 AQQAEQEALLAQLSAEE----AAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAA 225
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
441-909 |
1.34e-07 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 55.52 E-value: 1.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 441 KTKIDQLKQELSKK-----------ESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEE 509
Cdd:pfam05557 8 KARLSQLQNEKKQMelehkrarielEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRLKKKYLEA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 510 KESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSntdt 589
Cdd:pfam05557 88 LNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQQS---- 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 590 ALATLEEALSEKERIIERLKEQRE--RDDRERLEEIESFRKENKDLKEKVNALQaelTEKESSLIdLKEHASSLaSAGLK 667
Cdd:pfam05557 164 SLAEAEQRIKELEFEIQSQEQDSEivKNSKSELARIPELEKELERLREHNKHLN---ENIENKLL-LKEEVEDL-KRKLE 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 668 RDSKLKSLEIAIEQKKEecnKLEAQLKKAHNIEDDSRMN---PE-FADRLKQLDKEASYYRDECGKAQAEVDRLLEILKE 743
Cdd:pfam05557 239 REEKYREEAATLELEKE---KLEQELQSWVKLAQDTGLNlrsPEdLSRRIEQLQQREIVLKEENSSLTSSARQLEKARRE 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 744 VENEKNDKDKKIAELERHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQIEELMNALEKTRQELDAT 823
Cdd:pfam05557 316 LEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILESYDKELTMSNYSPQLLERIEEAEDMTQKMQAH 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 824 KARLaSTQQSLAEKEAhlanlriERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKK--KTQEEVMALKREKDRL 901
Cdd:pfam05557 396 NEEM-EAQLSVAEEEL-------GGYKQQAQTLERELQALRQQESLADPSYSKEEVDSLRRKleTLELERQRLREQKNEL 467
|
....*...
gi 1039746081 902 VHQLKQQT 909
Cdd:pfam05557 468 EMELERRC 475
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
328-915 |
1.66e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 55.75 E-value: 1.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 328 KSLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELHRRSQLQPEPAKTKALQTVIEMKDTKIASLERNIRDLED 407
Cdd:pfam02463 200 LKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEK 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 408 EVQMLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLT 487
Cdd:pfam02463 280 EKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 488 AKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKE----RKINVLQKKIENLQEQL 563
Cdd:pfam02463 360 ELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEdllkEEKKEELEILEEEEESI 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 564 RDKDKQLTNLKDRVKsLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAE 643
Cdd:pfam02463 440 ELKQGKLTEEKEELE-KQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKD 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 644 LTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKAHNIEDDSRMNPEFADRLKQLDKEASYY 723
Cdd:pfam02463 519 GVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLE 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 724 RD----ECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKYNQQ--LEKKKNAQLLEEVRRREDSM 797
Cdd:pfam02463 599 IDpilnLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEglAEKSEVKASLSELTKELLEI 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 798 VDNSQHLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALL 877
Cdd:pfam02463 679 QELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLK 758
|
570 580 590
....*....|....*....|....*....|....*...
gi 1039746081 878 ELSASKKKKTQEEVMALKREKDRLVHQLKQQTQNRMKL 915
Cdd:pfam02463 759 KEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKL 796
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
491-892 |
1.77e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 55.16 E-value: 1.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 491 QRAAILQTEVDALRLRL---EEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQ--KKIENLQEQLRD 565
Cdd:COG4717 64 RKPELNLKELKELEEELkeaEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPlyQELEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 566 KDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELT 645
Cdd:COG4717 144 LPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELE 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 646 EKESSLIDLKEH-------------------ASSLASAGLKRDSKLKSLE---------------IAIEQKKEECNKLEA 691
Cdd:COG4717 224 ELEEELEQLENEleaaaleerlkearlllliAAALLALLGLGGSLLSLILtiagvlflvlgllalLFLLLAREKASLGKE 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 692 QLKKAHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVAN 771
Cdd:COG4717 304 AEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVED 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 772 L--------KYNQQLEKKKNAQLLEE-VRRREDSMVDNSQHLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLA 842
Cdd:COG4717 384 EeelraaleQAEEYQELKEELEELEEqLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELE 463
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 1039746081 843 NLriERRKQLEEILEmKQEALLAAISEKDANIALLELSASKKKKTQEEVM 892
Cdd:COG4717 464 QL--EEDGELAELLQ-ELEELKAELRELAEEWAALKLALELLEEAREEYR 510
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
383-625 |
2.36e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.00 E-value: 2.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 383 ALQTVIEMKDTKIASLERNIRDLEDEVQMLKANgvlnTEDREEEIKQIEvykshskfmkTKIDQLKQELSKKESELLALQ 462
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKE----EKALLKQLAALE----------RRIAALARRIRALEQELAALE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 463 TKLETLSNQNSDCKQHIEVLKESLtAKEQRAAILQTEVDALRLRLEEKESF-LNKKTKQLQDLTEEKGTLAGEIRDMKDM 541
Cdd:COG4942 83 AELAELEKEIAELRAELEAQKEEL-AELLRALYRLGRQPPLALLLSPEDFLdAVRRLQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 542 LEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLE 621
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
....
gi 1039746081 622 EIES 625
Cdd:COG4942 242 RTPA 245
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
232-873 |
2.51e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 55.05 E-value: 2.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 232 TIQALQDELRTQR-DLNHLLQQESGNRGAEHFTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQK-QTLNAR 309
Cdd:TIGR00606 423 LKQEQADEIRDEKkGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLtETLKKE 502
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 310 DESIKKL-LEMLQSKGLPSKSLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELhrrSQLQPEPAKTKALQTVI 388
Cdd:TIGR00606 503 VKSLQNEkADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDEL---TSLLGYFPNKKQLEDWL 579
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 389 EMKDTKIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEVYKSH------SKFMKTKIDQLKQELSKKESELLALQ 462
Cdd:TIGR00606 580 HSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKlfdvcgSQDEESDLERLKEEIEKSSKQRAMLA 659
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 463 TK-------LETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEI 535
Cdd:TIGR00606 660 GAtavysqfITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSII 739
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 536 -RDMKDMLEVKERKINVlQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTdTALATLEEALSEKERIIERL------ 608
Cdd:TIGR00606 740 dLKEKEIPELRNKLQKV-NRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDV-TIMERFQMELKDVERKIAQQaaklqg 817
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 609 -----------KEQRERDDRER--LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHAS---SLASAGLKRDSKL 672
Cdd:TIGR00606 818 sdldrtvqqvnQEKQEKQHELDtvVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQrrqQFEEQLVELSTEV 897
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 673 KSLEIAIEQKKEECNKLEAQLKK---------AHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLeilKE 743
Cdd:TIGR00606 898 QSLIREIKDAKEQDSPLETFLEKdqqekeeliSSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYL---KQ 974
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 744 VENEKNDKDKKIAELERHMKDQNKKVANLKYN------------QQLEKKKNAQLLEEVRRREDSMVDNSQHLQIEELMN 811
Cdd:TIGR00606 975 KETELNTVNAQLEECEKHQEKINEDMRLMRQDidtqkiqerwlqDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQ 1054
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039746081 812 ALEKTRQELDATKAR--LASTQQSLAEKEAHLANLRIeRRKQLEEILEMKQEALLAAISEKDAN 873
Cdd:TIGR00606 1055 EHQKLEENIDLIKRNhvLALGRQKGYEKEIKHFKKEL-REPQFRDAEEKYREMMIVMRTTELVN 1117
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
425-636 |
2.57e-07 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 54.64 E-value: 2.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 425 EEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLET----------LSNQNSDCKQHI--EVLKESLTAKEQR 492
Cdd:PHA02562 157 EDLLDISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTynknieeqrkKNGENIARKQNKydELVEEAKTIKAEI 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 493 AAiLQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGE----------------IRDMKDMLEVKERKINVLQKKI 556
Cdd:PHA02562 237 EE-LTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVikmyekggvcptctqqISEGPDRITKIKDKLKELQHSL 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 557 ENL---QEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDrerlEEIESFRKENKDL 633
Cdd:PHA02562 316 EKLdtaIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNA----EELAKLQDELDKI 391
|
...
gi 1039746081 634 KEK 636
Cdd:PHA02562 392 VKT 394
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
148-647 |
3.06e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.54 E-value: 3.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 148 LDLQAQLKELQRENDLLRKELDIKDSKLGssmnsiktfwspELKKERVLRKEEAARMSVLKEQMRVSHEENqllDARRTK 227
Cdd:COG4913 277 LRAALRLWFAQRRLELLEAELEELRAELA------------RLEAELERLEARLDALREELDELEAQIRGN---GGDRLE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 228 HLQLTIQALQDELRTQRdlNHLLQQESGNRGAeHFTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLN 307
Cdd:COG4913 342 QLEREIERLERELEERE--RRRARLEALLAAL-GLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLR 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 308 ARDESIKKLLEMLQSKGlpsKSLEDDNERTRRMAEAESQVS---------HLEVILDQK------EK------------- 359
Cdd:COG4913 419 RELRELEAEIASLERRK---SNIPARLLALRDALAEALGLDeaelpfvgeLIEVRPEEErwrgaiERvlggfaltllvpp 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 360 ----------ENIHLREELH------RRSQLQPEPAKTKALQTVIEMKDTKI-----ASLER--------NIRDLEDEVQ 410
Cdd:COG4913 496 ehyaaalrwvNRLHLRGRLVyervrtGLPDPERPRLDPDSLAGKLDFKPHPFrawleAELGRrfdyvcvdSPEELRRHPR 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 411 ------MLKANGVLNTEDREEEIKQIEVYKSHSKfmkTKIDQLKQELSKKESELLALQTKLETLsnqnsdcKQHIEVLKE 484
Cdd:COG4913 576 aitragQVKGNGTRHEKDDRRRIRSRYVLGFDNR---AKLAALEAELAELEEELAEAEERLEAL-------EAELDALQE 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 485 SLTAKEQRAAILQTEVD--ALRLRLEEKEsflnkktKQLQDLTEEKGTLAGeirdMKDMLEVKERKINVLQKKIENLQEQ 562
Cdd:COG4913 646 RREALQRLAEYSWDEIDvaSAEREIAELE-------AELERLDASSDDLAA----LEEQLEELEAELEELEEELDELKGE 714
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 563 LRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEkERIIERLKEQRERDDRERLEEiesfrkENKDLKEKVNALQA 642
Cdd:COG4913 715 IGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLE-ERFAAALGDAVERELRENLEE------RIDALRARLNRAEE 787
|
....*
gi 1039746081 643 ELTEK 647
Cdd:COG4913 788 ELERA 792
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
495-906 |
3.68e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.30 E-value: 3.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 495 ILQTEVDALRLRLEEKESFLnKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKInvlqKKIENLQEQLRDKDKQLTNLK 574
Cdd:PRK03918 132 IRQGEIDAILESDESREKVV-RQILGLDDYENAYKNLGEVIKEIKRRIERLEKFI----KRTENIEELIKEKEKELEEVL 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 575 DRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQR-------------ERDDRERLEEIESFRKENKDLKEKVNALQ 641
Cdd:PRK03918 207 REINEISSELPELREELEKLEKEVKELEELKEEIEELEkeleslegskrklEEKIRELEERIEELKKEIEELEEKVKELK 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 642 A--ELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQL----KKAHNIEDDSRMNPEFA---DR 712
Cdd:PRK03918 287 ElkEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLeelkKKLKELEKRLEELEERHelyEE 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 713 LKQLDKEASYYRDEcgKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKYNqqLEKKKNAQLLEEVRR 792
Cdd:PRK03918 367 AKAKKEELERLKKR--LTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKA--IEELKKAKGKCPVCG 442
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 793 REdsmvdnsqhLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDA 872
Cdd:PRK03918 443 RE---------LTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLK 513
|
410 420 430
....*....|....*....|....*....|....*.
gi 1039746081 873 NIALLELSASKKK--KTQEEVMALKREKDRLVHQLK 906
Cdd:PRK03918 514 KYNLEELEKKAEEyeKLKEKLIKLKGEIKSLKKELE 549
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
168-915 |
6.14e-07 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 53.93 E-value: 6.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 168 LDIKDSKLGSSMNSIKTFWSPELKKERVLRKEEAARMsvLKEQMRVSHEENQLLdarRTKHLQLTIQALQDELRTQRDLN 247
Cdd:COG5022 714 IDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATR--IQRAIRGRYLRRRYL---QALKRIKKIQVIQHGFRLRRLVD 788
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 248 HLLQQESGNRGAEHFTIELTEENFRRLQAEHDRQAKEL---FLLRKTLE-EMELRIETQKQTLnARDESIKKLLEMLQSK 323
Cdd:COG5022 789 YELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIkreKKLRETEEvEFSLKAEVLIQKF-GRSLKAKKRFSLLKKE 867
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 324 GLPSKS---LEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELH--RRSQLQPEPAKTKALQTVIEMKDTKIASl 398
Cdd:COG5022 868 TIYLQSaqrVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSsdLIENLEFKTELIARLKKLLNNIDLEEGP- 946
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 399 ERNIRDLEDEVQMLKANGVLN--TEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTK---LETLSNQNS 473
Cdd:COG5022 947 SIEYVKLPELNKLHEVESKLKetSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQEStkqLKELPVEVA 1026
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 474 DCKQHIEVLKESLTAKEQraailQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMlEVKERKINVLQ 553
Cdd:COG5022 1027 ELQSASKIISSESTELSI-----LKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLEST-ENLLKTINVKD 1100
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 554 KKI--------ENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIES 625
Cdd:COG5022 1101 LEVtnrnlvkpANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAALSEK 1180
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 626 FRKENKDLKEKVNALQAELTEKESSLIDLkehaSSLASAGLKRDSKLKSLEiaieqkkeecnkleaqlKKAHNIEDDSRM 705
Cdd:COG5022 1181 RLYQSALYDEKSKLSSSEVNDLKNELIAL----FSKIFSGWPRGDKLKKLI-----------------SEGWVPTEYSTS 1239
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 706 NPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNdkdKKIAELERHMKDQN-----KKVANLKYNQQLEK 780
Cdd:COG5022 1240 LKGFNNLNKKFDTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLP---ATINSLLQYINVGLfnalrTKASSLRWKSATEV 1316
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 781 KKNAQLLEEVRRREDSMVDNSQHLQIEELMNALEKTRQELDATKARLaSTQQSLaeKEAHLANLrIERRKQLEEILEMKQ 860
Cdd:COG5022 1317 NYNSEELDDWCREFEISDVDEELEELIQAVKVLQLLKDDLNKLDELL-DACYSL--NPAEIQNL-KSRYDPADKENNLPK 1392
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*
gi 1039746081 861 EALLAAisEKDANIALLELSASKKKKTQEEVMALKREKDRLVHQLKQQTQNRMKL 915
Cdd:COG5022 1393 EILKKI--EALLIKQELQLSLEGKDETEVHLSEIFSEEKSLISLDRNSIYKEEVL 1445
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
281-532 |
8.63e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 8.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 281 QAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLqskglpsKSLEDD-NERTRRMAEAESQVSHLEVILDQKEK 359
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQL-------AALERRiAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 360 ENIHLREELHRRSQLQpepakTKALQTVIEMKDTKIASLERNIRDLEDEVQMLKANGVLNTEDREeeikQIEVYKSHSKF 439
Cdd:COG4942 91 EIAELRAELEAQKEEL-----AELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARRE----QAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 440 MKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLE--EKESFLNKK 517
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIArlEAEAAAAAE 241
|
250
....*....|....*
gi 1039746081 518 TKQLQDLTEEKGTLA 532
Cdd:COG4942 242 RTPAAGFAALKGKLP 256
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
187-915 |
1.22e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 52.66 E-value: 1.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 187 SPELKKERVLRKEEAARMSVLKEQMRVSHEENQLLDARRTKHLqltIQALQDELRTQRDLNHL--LQQESGNRGAEHFTI 264
Cdd:TIGR00618 189 KKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHL---REALQQTQQSHAYLTQKreAQEEQLKKQQLLKQL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 265 ELTEENFRRLQAEHDRQAKELFLLRKTLEEME-----LRIETQKQTLNARDESIKKLLEmlqskglpsKSLEDDNERTRR 339
Cdd:TIGR00618 266 RARIEELRAQEAVLEETQERINRARKAAPLAAhikavTQIEQQAQRIHTELQSKMRSRA---------KLLMKRAAHVKQ 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 340 MAEAESQVSHLEVILDQKEKENIHLREELHRRSQLQPEPAKT---KALQTVIEMKDTKIASLERNIRDLEDEVqmlkanG 416
Cdd:TIGR00618 337 QSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTqhiHTLQQQKTTLTQKLQSLCKELDILQREQ------A 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 417 VLNTEDREEEIKQIEVYKSHSKF-MKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRaai 495
Cdd:TIGR00618 411 TIDTRTSAFRDLQGQLAHAKKQQeLQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETR--- 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 496 LQTEVDALRLRLEEKESFLNKKTKQLqdltEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKD 575
Cdd:TIGR00618 488 KKAVVLARLLELQEEPCPLCGSCIHP----NPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKE 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 576 RVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTE--KESSLID 653
Cdd:TIGR00618 564 QMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLqqCSQELAL 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 654 LKEHASSLASAGLKRDSKLKSLEIAiEQKKEECNKLEAQLKKAHNIEddsrmnpefadRLKQLDKEASYYRDEcgKAQAE 733
Cdd:TIGR00618 644 KLTALHALQLTLTQERVREHALSIR-VLPKELLASRQLALQKMQSEK-----------EQLTYWKEMLAQCQT--LLREL 709
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 734 VDRLLEILKEVENEKNDKDKKIAELErhmkdqnkkvANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQIEELMNA- 812
Cdd:TIGR00618 710 ETHIEEYDREFNEIENASSSLGSDLA----------AREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAe 779
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 813 LEKTRQELDATKARLASTQQSLAEKEAHLAnlriERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVM 892
Cdd:TIGR00618 780 LSHLAAEIQFFNRLREEDTHLLKTLEAEIG----QEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYE 855
|
730 740
....*....|....*....|...
gi 1039746081 893 ALKREKDRLVHQLKQQTQNRMKL 915
Cdd:TIGR00618 856 ECSKQLAQLTQEQAKIIQLSDKL 878
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
217-768 |
1.63e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.22 E-value: 1.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 217 ENQLLDARR-TKHLQ------LTIQALQDELRTQRDLNHLLQQESGNRGAEHFTIELT--EENFRRLQAEHDRQAKELFL 287
Cdd:COG4913 241 HEALEDAREqIELLEpirelaERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEelRAELARLEAELERLEARLDA 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 288 LRKTLEEMELRIETQKqtlNARDESIKKLLEMLQskglpskslEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREE 367
Cdd:COG4913 321 LREELDELEAQIRGNG---GDRLEQLEREIERLE---------RELEERERRRARLEALLAALGLPLPASAEEFAALRAE 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 368 LHRRsqLQPEPAKTKALQTVIEMKDTKIASLERNIRDLEDEVQMLKANGVlNTEDREEEIKqievykshskfmktkiDQL 447
Cdd:COG4913 389 AAAL--LEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKS-NIPARLLALR----------------DAL 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 448 KQELSKKESEL-----------------LALQTKLETLS-----------------NQNSDcKQHIEVLKESLTAKEQRA 493
Cdd:COG4913 450 AEALGLDEAELpfvgelievrpeeerwrGAIERVLGGFAltllvppehyaaalrwvNRLHL-RGRLVYERVRTGLPDPER 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 494 AilQTEVDALRLRLEEKES----FLNKKTKQLQDL----------TEEKG-TLAGEIRDMKDMLE----VKERKINVL-- 552
Cdd:COG4913 529 P--RLDPDSLAGKLDFKPHpfraWLEAELGRRFDYvcvdspeelrRHPRAiTRAGQVKGNGTRHEkddrRRIRSRYVLgf 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 553 --QKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDD-RERLEEIESFRKE 629
Cdd:COG4913 607 dnRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAElEAELERLDASSDD 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 630 NKDLKEKVNALQAELTEKESSLIDLKEhasslasaglkrdsKLKSLEIAIEQKKEECNKLEAQLKKAHNIEdDSRMNPEF 709
Cdd:COG4913 687 LAALEEQLEELEAELEELEEELDELKG--------------EIGRLEKELEQAEEELDELQDRLEAAEDLA-RLELRALL 751
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 1039746081 710 ADRLKQLDKEASYyrdecgkaqAEVDRLLEilKEVENEKNDKDKKIAELERHMKDQNKK 768
Cdd:COG4913 752 EERFAAALGDAVE---------RELRENLE--ERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
440-639 |
1.69e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 50.31 E-value: 1.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 440 MKTKIDQLKqELSKKESELLALQTKLETLsnqnsdcKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLnkktK 519
Cdd:COG1579 2 MPEDLRALL-DLQELDSELDRLEHRLKEL-------PAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEI----E 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 520 QLQDLTEEKGTLAGEIRDMKDMlevkerkiNVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQtdssntdTALATLEEALS 599
Cdd:COG1579 70 EVEARIKKYEEQLGNVRNNKEY--------EALQKEIESLKRRISDLEDEILELMERIEELE-------EELAELEAELA 134
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1039746081 600 EKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNA 639
Cdd:COG1579 135 ELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPP 174
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
546-695 |
1.72e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 50.31 E-value: 1.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 546 ERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQ-------RERDDRE 618
Cdd:COG1579 16 DSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQlgnvrnnKEYEALQ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 619 RleEIESFRKENKDLKEKVNALQAELTEKESSLID----LKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLK 694
Cdd:COG1579 96 K--EIESLKRRISDLEDEILELMERIEELEEELAEleaeLAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIP 173
|
.
gi 1039746081 695 K 695
Cdd:COG1579 174 P 174
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
556-784 |
2.28e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 51.47 E-value: 2.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 556 IENLQE----QLRDKDKQLTNLKDR-VKSLQTDSSNtdtALATLEEALSEKERIIERLKEQRERDDRERLEEIESF---- 626
Cdd:PRK05771 22 LEALHElgvvHIEDLKEELSNERLRkLRSLLTKLSE---ALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEEleki 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 627 RKENKDLKEKVNALQAELTEKES-------------SLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKlEAQL 693
Cdd:PRK05771 99 EKEIKELEEEISELENEIKELEQeierlepwgnfdlDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYIS-TDKG 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 694 KKAHNIEDDSRMNPEFADRLKQLDKEAsYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERhmKDQNKKVANLK 773
Cdd:PRK05771 178 YVYVVVVVLKELSDEVEEELKKLGFER-LELEEEGTPSELIREIKEELEEIEKERESLLEELKELAK--KYLEELLALYE 254
|
250
....*....|.
gi 1039746081 774 YNQQLEKKKNA 784
Cdd:PRK05771 255 YLEIELERAEA 265
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
145-613 |
3.13e-06 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 51.28 E-value: 3.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 145 STMLDLQAQLKELQRENDLLRKELDIKDSKLGSSMNSIKTFWSPELKKERVLRKEEAARMSVLKEQMrvshEENQLLdar 224
Cdd:pfam05557 9 ARLSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQA----ELNRLK--- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 225 rTKHLQLTIQALQDELRTQRDLNHLLQQESGNRGAEHFTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRI---ET 301
Cdd:pfam05557 82 -KKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRqnlEK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 302 QKQTLNARDESIKKLLEMLQSKglpskslEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELHRRSQLQPEPAKT 381
Cdd:pfam05557 161 QQSSLAEAEQRIKELEFEIQSQ-------EQDSEIVKNSKSELARIPELEKELERLREHNKHLNENIENKLLLKEEVEDL 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 382 KALQTVIEMKDTKIASLERNIRDLEDEVQM---LKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESEL 458
Cdd:pfam05557 234 KRKLEREEKYREEAATLELEKEKLEQELQSwvkLAQDTGLNLRSPEDLSRRIEQLQQREIVLKEENSSLTSSARQLEKAR 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 459 LALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNkKTKQLQDLTEEKGTLAGEIRDM 538
Cdd:pfam05557 314 RELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILESYDKELT-MSNYSPQLLERIEEAEDMTQKM 392
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039746081 539 KDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDrvKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRE 613
Cdd:pfam05557 393 QAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQ--QESLADPSYSKEEVDSLRRKLETLELERQRLREQKN 465
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
273-565 |
3.69e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 3.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 273 RLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLPSKSLEddnertRRMAEAESQVSHLEV 352
Cdd:TIGR02169 692 SLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE------QEIENVKSELKELEA 765
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 353 ILDQKEKENIHLREELH------RRSQLQPEPAKTKALQTVIEMKDTKIASLERNIRD-------LEDEVQMLKANgVLN 419
Cdd:TIGR02169 766 RIEELEEDLHKLEEALNdlearlSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRltlekeyLEKEIQELQEQ-RID 844
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 420 TEDREEEIKQievykshskfmktKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTE 499
Cdd:TIGR02169 845 LKEQIKSIEK-------------EIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQ 911
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039746081 500 VDALRLRLEEKESflnkktkQLQDLTEEKGTLAGEIRDMKDMLEvKERKINVLQKKIENLQEQLRD 565
Cdd:TIGR02169 912 IEKKRKRLSELKA-------KLEALEEELSEIEDPKGEDEEIPE-EELSLEDVQAELQRVEEEIRA 969
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
508-889 |
3.79e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 50.88 E-value: 3.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 508 EEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNT 587
Cdd:pfam05483 229 EEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRS 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 588 DTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLK 667
Cdd:pfam05483 309 MSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 668 RDSKLKSLEIAIEQKKEECNKLEAQLKKAHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEI------- 740
Cdd:pfam05483 389 KSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAiktseeh 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 741 -LKEVENEKNDKDK---KIAELERH---MKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQIEE--LMN 811
Cdd:pfam05483 469 yLKEVEDLKTELEKeklKNIELTAHcdkLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEmnLRD 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 812 ALEKTRQEL----DATKARLASTqqslaEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALL--ELSASKKK 885
Cdd:pfam05483 549 ELESVREEFiqkgDEVKCKLDKS-----EENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELhqENKALKKK 623
|
....
gi 1039746081 886 KTQE 889
Cdd:pfam05483 624 GSAE 627
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
162-584 |
3.82e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.27 E-value: 3.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 162 DLLRKELDIKD---SKLGSSMNSIKTFWSPELKKERVL---RKEEAARMSVLKEQMRVSHEenqlLDARRTKHLQLTIQA 235
Cdd:pfam15921 415 DHLRRELDDRNmevQRLEALLKAMKSECQGQMERQMAAiqgKNESLEKVSSLTAQLESTKE----MLRKVVEELTAKKMT 490
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 236 LQDELRTQRDLNHLLQQESGnrgaehfTIELTEENFRRLQAEHDRQAKELFLLrKTLEEMELRIETQKQTLNARDESIKK 315
Cdd:pfam15921 491 LESSERTVSDLTASLQEKER-------AIEATNAEITKLRSRVDLKLQELQHL-KNEGDHLRNVQTECEALKLQMAEKDK 562
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 316 LLEMLQSKGLPSKSLEDDNERTR-----RMAEAESQVSHLEVILDQ----KEKENIHLREELHRRSQLQPEPAK-----T 381
Cdd:pfam15921 563 VIEILRQQIENMTQLVGQHGRTAgamqvEKAQLEKEINDRRLELQEfkilKDKKDAKIRELEARVSDLELEKVKlvnagS 642
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 382 KALQTVIEMKDTK------IASLERNIRDLEDEVQMLKANgvlntedreeeikqievYKSHSKFMKTKIDQLKQELSKKE 455
Cdd:pfam15921 643 ERLRAVKDIKQERdqllneVKTSRNELNSLSEDYEVLKRN-----------------FRNKSEEMETTTNKLKMQLKSAQ 705
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 456 SELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALrlrlEEKESFLNKKTKQLQD----LTEEKGTL 531
Cdd:pfam15921 706 SELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFL----EEAMTNANKEKHFLKEeknkLSQELSTV 781
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1039746081 532 AGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDS 584
Cdd:pfam15921 782 ATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQES 834
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
712-869 |
4.27e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 49.15 E-value: 4.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 712 RLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVAnlKYNQQLEKKKNAQLLEEVR 791
Cdd:COG1579 18 ELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIK--KYEEQLGNVRNNKEYEALQ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 792 RREDSMVDNSQHL--QIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEmKQEALLAAISE 869
Cdd:COG1579 96 KEIESLKRRISDLedEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA-EREELAAKIPP 174
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
354-603 |
4.79e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 4.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 354 LDQKEKENIHLREELHR-RSQLQPEPAKTKALQTVIEMKDTKIASLERNIRDLEDEVQMLkangvlntedrEEEIKQIEv 432
Cdd:COG4942 22 AAEAEAELEQLQQEIAElEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL-----------EAELAELE- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 433 ykshskfmkTKIDQLKQELSKKESELLALQTKLETLSNQNSdckqhIEVL--KESLTAKEQRAAILQTEVDALRLRLEEk 510
Cdd:COG4942 90 ---------KEIAELRAELEAQKEELAELLRALYRLGRQPP-----LALLlsPEDFLDAVRRLQYLKYLAPARREQAEE- 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 511 esfLNKKTKQLQDLTEEkgtLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTA 590
Cdd:COG4942 155 ---LRADLAELAALRAE---LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
250
....*....|...
gi 1039746081 591 LATLEEALSEKER 603
Cdd:COG4942 229 IARLEAEAAAAAE 241
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
711-899 |
5.17e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 49.83 E-value: 5.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 711 DRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLkyNQQLEKKK-------- 782
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEA--EAEIEERReelgerar 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 783 --------------------------NAQLLEEVRRREDSMVDnsqhlQIEELMNALEKTRQELDATKARLASTQQSLAE 836
Cdd:COG3883 94 alyrsggsvsyldvllgsesfsdfldRLSALSKIADADADLLE-----ELKADKAELEAKKAELEAKLAELEALKAELEA 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039746081 837 KEAHLANLRIERRKQLEEiLEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKD 899
Cdd:COG3883 169 AKAELEAQQAEQEALLAQ-LSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
388-648 |
5.62e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.68 E-value: 5.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 388 IEMKDTKIASLERNIRDLEDEVQMLKANgVLNTEDREEEIKQIEVYKSHSKFMKT---KIDQLKQELSKKE---SELLAL 461
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAE-LDALQERREALQRLAEYSWDEIDVASaerEIAELEAELERLDassDDLAAL 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 462 QTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFlnKKTKQLQDLTEEKGTLAGEiRDMKDM 541
Cdd:COG4913 691 EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDL--ARLELRALLEERFAAALGD-AVEREL 767
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 542 LEVKERKINVLQKKIENLQEQLRDKdkqltnLKDRVKSLQTDSSNTDTALATLEEALSEKERII--------ERLKEQRE 613
Cdd:COG4913 768 RENLEERIDALRARLNRAEEELERA------MRAFNREWPAETADLDADLESLPEYLALLDRLEedglpeyeERFKELLN 841
|
250 260 270
....*....|....*....|....*....|....*.
gi 1039746081 614 RDDRERLEEIES-FRKENKDLKEKVNALQAELTEKE 648
Cdd:COG4913 842 ENSIEFVADLLSkLRRAIREIKERIDPLNDSLKRIP 877
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
339-857 |
7.23e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 50.17 E-value: 7.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 339 RMAEAESQVSHLEVILDQKEKENIHLREELHRRSQLQPEPAKTKA-LQTVIEMKDTKIASLERNIRDLEDEVQML---KA 414
Cdd:pfam01576 20 RQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRArLAARKQELEEILHELESRLEEEEERSQQLqneKK 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 415 NGVLNTEDREEEIKQIEVYKSHSKFMKTKIDqlkQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAA 494
Cdd:pfam01576 100 KMQQHIQDLEEQLDEEEAARQKLQLEKVTTE---AKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAK 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 495 ILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDmlevkerKINVLQKKIENLQEQLRDKDKQLTNLK 574
Cdd:pfam01576 177 SLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQE-------QIAELQAQIAELRAQLAKKEEELQAAL 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 575 DRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERL---EEIESFRKENKDLKEKVNALQAELTEKESSL 651
Cdd:pfam01576 250 ARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRdlgEELEALKTELEDTLDTTAAQQELRSKREQEV 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 652 IDLKE--------HASSLASAGLKRDSKLKSLEIAIEQKK--------------EECNKLEAQLKKAHNIEDDSRMN--- 706
Cdd:pfam01576 330 TELKKaleeetrsHEAQLQEMRQKHTQALEELTEQLEQAKrnkanlekakqaleSENAELQAELRTLQQAKQDSEHKrkk 409
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 707 -----PEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKD-----QNKKVANLKYN- 775
Cdd:pfam01576 410 legqlQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDtqellQEETRQKLNLSt 489
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 776 --QQLEKKKNAqLLEEVRRREDSMVDNSQHLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLE 853
Cdd:pfam01576 490 rlRQLEDERNS-LQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAY 568
|
....
gi 1039746081 854 EILE 857
Cdd:pfam01576 569 DKLE 572
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
742-861 |
7.24e-06 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 49.78 E-value: 7.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 742 KEVENEKNDKDKKIAELERHMKDQnKKVANLKYNQQLEKKKNaQLLEEVRRREDSMVDNSQHLQIEEL-----MNALEKT 816
Cdd:PRK12704 31 AKIKEAEEEAKRILEEAKKEAEAI-KKEALLEAKEEIHKLRN-EFEKELRERRNELQKLEKRLLQKEEnldrkLELLEKR 108
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1039746081 817 RQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQE 861
Cdd:PRK12704 109 EEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAE 153
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
480-629 |
7.78e-06 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 49.86 E-value: 7.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 480 EVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQdlteekgtlaGEIRDMKDMLEVKERKINVLQKKIENL 559
Cdd:COG2433 384 ELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLE----------AEVEELEAELEEKDERIERLERELSEA 453
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039746081 560 QEQLRD---KDKQLTNLKDRVKSLQTDssntdtaLATLEEALSEKERIIERLKEQRERDDRERLE---EIESFRKE 629
Cdd:COG2433 454 RSEERReirKDREISRLDREIERLERE-------LEEERERIEELKRKLERLKELWKLEHSGELVpvkVVEKFTKE 522
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
501-755 |
1.16e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 49.52 E-value: 1.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 501 DALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKK----IENLQEQLRDKDKqltnLKDR 576
Cdd:PLN02939 96 DHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQNAEKNILLLNQArlqaLEDLEKILTEKEA----LQGK 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 577 VKSLQTDSSNTDTALAtleeaLSEKERI-IERLKEQRERDDRERL--------------EEIESFRKENKDLKEKVNALQ 641
Cdd:PLN02939 172 INILEMRLSETDARIK-----LAAQEKIhVEILEEQLEKLRNELLirgateglcvhslsKELDVLKEENMLLKDDIQFLK 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 642 AELT------------EKESSLID--LKEHASSLASAglKRD-SKLKSLEIAIEQKKEEcnKLEAQLKKAHNIEDDSRM- 705
Cdd:PLN02939 247 AELIevaeteervfklEKERSLLDasLRELESKFIVA--QEDvSKLSPLQYDCWWEKVE--NLQDLLDRATNQVEKAALv 322
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1039746081 706 ---NPEFADRLKQLD---KEASYYRDECGKaqaeVDRLLEILKEVENEKNDKDKKI 755
Cdd:PLN02939 323 ldqNQDLRDKVDKLEaslKEANVSKFSSYK----VELLQQKLKLLEERLQASDHEI 374
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
391-685 |
1.38e-05 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 49.27 E-value: 1.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 391 KDTKIASLERNIRDLEDEVQMLKA--NGVLNT-----EDREEEIKQIEvYKSHSKFMKTKIDQLKQELSKKESELLALQT 463
Cdd:PTZ00108 997 KEYLLGKLERELARLSNKVRFIKHviNGELVItnakkKDLVKELKKLG-YVRFKDIIKKKSEKITAEEEEGAEEDDEADD 1075
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 464 KLETLSNQNSDC-------------KQHIEVLKESLTAKEQRAAILQ---------TEVDALRLRLEEKESFLNKKTKQL 521
Cdd:PTZ00108 1076 EDDEEELGAAVSydyllsmpiwsltKEKVEKLNAELEKKEKELEKLKnttpkdmwlEDLDKFEEALEEQEEVEEKEIAKE 1155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 522 QDLTEEKGTLAGEIRDMKDMLEVKERKIN----------VLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTAL 591
Cdd:PTZ00108 1156 QRLKSKTKGKASKLRKPKLKKKEKKKKKSsadkskkasvVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKP 1235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 592 ATLEEALSEKERIIERLKEQRERDDRERLEEIESFRkenKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSK 671
Cdd:PTZ00108 1236 KKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKP---KNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKK 1312
|
330
....*....|....*
gi 1039746081 672 -LKSLEIAIEQKKEE 685
Cdd:PTZ00108 1313 rLEGSLAALKKKKKS 1327
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
325-663 |
2.11e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 48.74 E-value: 2.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 325 LPSKSLEDDNERTRrmaeaeSQVSHLEVILDQKEKENIHLREElHRRSQLQpepaktkaLQTVIEMkdtkIASLERNI-- 402
Cdd:PLN02939 86 LPQKSTSSDDDHNR------ASMQRDEAIAAIDNEQQTNSKDG-EQLSDFQ--------LEDLVGM----IQNAEKNIll 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 403 ------RDLEDEVQMLKANGVLNTE---------DREEEIKQIEVYKSHSKFMKTKIDQLKQELSKK----ESELLALQT 463
Cdd:PLN02939 147 lnqarlQALEDLEKILTEKEALQGKinilemrlsETDARIKLAAQEKIHVEILEEQLEKLRNELLIRgateGLCVHSLSK 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 464 KLETLSNQNSDCKQHIEVLKESLtakeqraaILQTEVDALRLRLEEKESFLNKKTKQLqdltEEKGTLAGEirdmkDMLE 543
Cdd:PLN02939 227 ELDVLKEENMLLKDDIQFLKAEL--------IEVAETEERVFKLEKERSLLDASLREL----ESKFIVAQE-----DVSK 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 544 VKERKINVLQKKIENLQEQLRDKDKQLTN----------LKDRVKSLQTDSSNTDTALATLE--EALSEKeriIERLKEQ 611
Cdd:PLN02939 290 LSPLQYDCWWEKVENLQDLLDRATNQVEKaalvldqnqdLRDKVDKLEASLKEANVSKFSSYkvELLQQK---LKLLEER 366
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 1039746081 612 RERDDRERLEEIESFRKENKDLKEKVNALQAElTEKESslidLKEHASSLAS 663
Cdd:PLN02939 367 LQASDHEIHSYIQLYQESIKEFQDTLSKLKEE-SKKRS----LEHPADDMPS 413
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
389-836 |
3.12e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 48.30 E-value: 3.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 389 EMKDTKIASLERNIRDLEDEVQMLKA--NGVLNTED-----REEEIKQIEvyKSHSKFMKTKIDQLKQELSKK---ESEL 458
Cdd:pfam12128 279 EERQETSAELNQLLRTLDDQWKEKRDelNGELSAADaavakDRSELEALE--DQHGAFLDADIETAAADQEQLpswQSEL 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 459 LALQTKLETL---------------SNQNSDCKQHIEVLKESL-----TAKEQRAAI---LQTEVDALRLRLEEKESFLN 515
Cdd:pfam12128 357 ENLEERLKALtgkhqdvtakynrrrSKIKEQNNRDIAGIKDKLakireARDRQLAVAeddLQALESELREQLEAGKLEFN 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 516 KKTKQLQD-LTEEKGTLAGEIRDmKDMLEVKERKinvlQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATL 594
Cdd:pfam12128 437 EEEYRLKSrLGELKLRLNQATAT-PELLLQLENF----DERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQA 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 595 EEALSEKERIIERLKEQRerdDRERLEEIESFRKENKDLKEKVNALQAELTEKESSL---IDLKEHASSLASAGLKRDsk 671
Cdd:pfam12128 512 SRRLEERQSALDELELQL---FPQAGTLLHFLRKEAPDWEQSIGKVISPELLHRTDLdpeVWDGSVGGELNLYGVKLD-- 586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 672 LKSLEIAIEQKKEEcnKLEAQLKKAHNIEDDSRmnpefaDRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVE------ 745
Cdd:pfam12128 587 LKRIDVPEWAASEE--ELRERLDKAEEALQSAR------EKQAAAEEQLVQANGELEKASREETFARTALKNARldlrrl 658
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 746 --NEKNDKDKKIAELERHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRR--REDSMVDNSQHLQIE-ELMNALEKTRQEL 820
Cdd:pfam12128 659 fdEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEqkREARTEKQAYWQVVEgALDAQLALLKAAI 738
|
490
....*....|....*.
gi 1039746081 821 DATKARLASTQQSLAE 836
Cdd:pfam12128 739 AARRSGAKAELKALET 754
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
440-742 |
5.28e-05 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 46.82 E-value: 5.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 440 MKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTK 519
Cdd:COG4372 43 LQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQK 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 520 QLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRV------KSLQTDSSNTDTALAT 593
Cdd:COG4372 123 ERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEaeqaldELLKEANRNAEKEEEL 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 594 LEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLK 673
Cdd:COG4372 203 AEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAA 282
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039746081 674 SLEIAIEQKKEECNKLEAQLKKAHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILK 742
Cdd:COG4372 283 LELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGLL 351
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
568-863 |
7.73e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 7.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 568 KQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERddRERLEEIESFRKENKDLKEKVNALQAELTek 647
Cdd:COG4913 204 KPIGDLDDFVREYMLEEPDTFEAADALVEHFDDLERAHEALEDAREQ--IELLEPIRELAERYAAARERLAELEYLRA-- 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 648 esslidlkehasslASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKAhnieddsrmnpefADRLKQLDKEasyyRDEC 727
Cdd:COG4913 280 --------------ALRLWFAQRRLELLEAELEELRAELARLEAELERL-------------EARLDALREE----LDEL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 728 GKAQAEVDrlLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRRedsmvdnsqhlqIE 807
Cdd:COG4913 329 EAQIRGNG--GDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAAL------------LE 394
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039746081 808 ELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLR----------IERRKQLEEILEMKQEAL 863
Cdd:COG4913 395 ALEEELEALEEALAEAEAALRDLRRELRELEAEIASLErrksniparlLALRDALAEALGLDEAEL 460
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
289-624 |
9.33e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.60 E-value: 9.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 289 RKTLEEMELRIETQKQTLNARDESIKKLLEMLQS---KGLPSKSLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLR 365
Cdd:PRK03918 400 KEEIEEEISKITARIGELKKEIKELKKAIEELKKakgKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLR 479
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 366 EELHR-RSQLQPEPAKTKALQTVIEMKDTKIASLERNIRDLEDEVQML-KANGVLNT-----EDREEEIKQIEVYKSHSK 438
Cdd:PRK03918 480 KELRElEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYeKLKEKLIKlkgeiKSLKKELEKLEELKKKLA 559
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 439 FMKTKIDQLKQELSKKESELLALQTKL-----ETLSNQNSDCKQHIEVL--KESLTAKEQRAAILQTEVDALRLRLEEKE 511
Cdd:PRK03918 560 ELEKKLDELEEELAELLKELEELGFESveeleERLKELEPFYNEYLELKdaEKELEREEKELKKLEEELDKAFEELAETE 639
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 512 SFLNKKTKQLQDLteEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLqtdsSNTDTAL 591
Cdd:PRK03918 640 KRLEELRKELEEL--EKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEER----EKAKKEL 713
|
330 340 350
....*....|....*....|....*....|...
gi 1039746081 592 ATLEEALSEKERIIERLKEQRERDDRERLEEIE 624
Cdd:PRK03918 714 EKLEKALERVEELREKVKKYKALLKERALSKVG 746
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
444-789 |
1.50e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 45.28 E-value: 1.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 444 IDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQD 523
Cdd:COG4372 26 IAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELES 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 524 LTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKEr 603
Cdd:COG4372 106 LQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQA- 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 604 IIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKK 683
Cdd:COG4372 185 LDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELE 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 684 EECNKLEAQLKKAHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMK 763
Cdd:COG4372 265 LAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQ 344
|
330 340
....*....|....*....|....*.
gi 1039746081 764 DQNKKVANLKYNQQLEKKKNAQLLEE 789
Cdd:COG4372 345 LLLVGLLDNDVLELLSKGAEAGVADG 370
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
428-733 |
1.62e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.50 E-value: 1.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 428 KQIEVYKSHSKFMKTKIDQLKQELSKKESELlALQTKLEtlsnqNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRL 507
Cdd:pfam17380 282 KAVSERQQQEKFEKMEQERLRQEKEEKAREV-ERRRKLE-----EAEKARQAEMDRQAAIYAEQERMAMERERELERIRQ 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 508 EEKEsflnkktKQLQDLTEEKgtLAGEIRDMKDMlevkERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNT 587
Cdd:pfam17380 356 EERK-------RELERIRQEE--IAMEISRMREL----ERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEM 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 588 DTALATLEEALS------------EKERIieRLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLI--D 653
Cdd:pfam17380 423 EQIRAEQEEARQrevrrleeerarEMERV--RLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILekE 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 654 LKEHASSLASAGLKRDSKLKSLE-----IAIEQKK---EECNKLEAQLKKAHNIEDDSRMNPEFADRLKQLDKEASYYRD 725
Cdd:pfam17380 501 LEERKQAMIEEERKRKLLEKEMEerqkaIYEEERRreaEEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQ 580
|
330
....*....|
gi 1039746081 726 --ECGKAQAE 733
Cdd:pfam17380 581 ivESEKARAE 590
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
447-581 |
1.81e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 44.96 E-value: 1.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 447 LKQELSKKESELLALQTKLETLSNQnsdckqhievlkesLTAKEQRAAILQTEVDALRLRLEEKES-------FLNKKTK 519
Cdd:PRK09039 44 LSREISGKDSALDRLNSQIAELADL--------------LSLERQGNQDLQDSVANLRASLSAAEAersrlqaLLAELAG 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 520 QLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQL------------RDKDKQL----------TNLKDRV 577
Cdd:PRK09039 110 AGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLaaleaaldasekRDRESQAkiadlgrrlnVALAQRV 189
|
....
gi 1039746081 578 KSLQ 581
Cdd:PRK09039 190 QELN 193
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
590-771 |
2.06e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 45.15 E-value: 2.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 590 ALATLEEALSEKERIIERLKEQRERDDRERLEEIEsfRKENKdLKEKVNALqaeltEKESSLIDlkehasslasaglKRD 669
Cdd:PRK12704 51 AEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQ--KLEKR-LLQKEENL-----DRKLELLE-------------KRE 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 670 SKLKSLEIAIEQKKEECNKLEAQLKKAHnieddsrmnpefADRLKQLDKEASYYRDEcgkAQAevdrllEILKEVENE-K 748
Cdd:PRK12704 110 EELEKKEKELEQKQQELEKKEEELEELI------------EEQLQELERISGLTAEE---AKE------ILLEKVEEEaR 168
|
170 180
....*....|....*....|...
gi 1039746081 749 NDKDKKIAELERHMKDQNKKVAN 771
Cdd:PRK12704 169 HEAAVLIKEIEEEAKEEADKKAK 191
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
352-603 |
2.36e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 44.92 E-value: 2.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 352 VILDQKEKENIhlrEELHRRSQLQPEPAKTkalqtviEMKDTKIASLERNIRDLEDEVQMLKAngVLNTEDREEEIKQIE 431
Cdd:PRK05771 12 VTLKSYKDEVL---EALHELGVVHIEDLKE-------ELSNERLRKLRSLLTKLSEALDKLRS--YLPKLNPLREEKKKV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 432 VYKSHSKFmktkIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLK--ESLTAKEQRA-----------AILQT 498
Cdd:PRK05771 80 SVKSLEEL----IKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEpwGNFDLDLSLLlgfkyvsvfvgTVPED 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 499 EVDALRLRLEEKESFLNKKTKQ-----LQDLTEEKGTLAGEIRDM-------------KDMLEVKERKINVLQKKIENLQ 560
Cdd:PRK05771 156 KLEELKLESDVENVEYISTDKGyvyvvVVVLKELSDEVEEELKKLgferleleeegtpSELIREIKEELEEIEKERESLL 235
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1039746081 561 EQLRDKDKQLTNLKdrvkslqtdssntdtaLATLEEALSEKER 603
Cdd:PRK05771 236 EELKELAKKYLEEL----------------LALYEYLEIELER 262
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
379-607 |
2.38e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.01 E-value: 2.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 379 AKTKALQTVIEMKDTKIASLERNIRDLEDEVQMLKA-NGVLNTEDREEEIKQievykshskfmktKIDQLKQELSKKESE 457
Cdd:COG3206 168 LRREEARKALEFLEEQLPELRKELEEAEAALEEFRQkNGLVDLSEEAKLLLQ-------------QLSELESQLAEARAE 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 458 LLALQTKLETLSNQNSDCKQHIEVLKES--LTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEkgtLAGEI 535
Cdd:COG3206 235 LAEAEARLAALRAQLGSGPDALPELLQSpvIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQ---LQQEA 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 536 RDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNT----DTALATLEEALSEKE------RII 605
Cdd:COG3206 312 QRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVArelyESLLQRLEEARLAEAltvgnvRVI 391
|
..
gi 1039746081 606 ER 607
Cdd:COG3206 392 DP 393
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
149-431 |
2.41e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.43 E-value: 2.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 149 DLQAQLKELQRENDLLRKELDIKDSKLGSSMNSIKTF------WSPELKKERVLRKEEAARMSVLKEQMRVSHEENQLLD 222
Cdd:TIGR02168 702 ELRKELEELEEELEQLRKELEELSRQISALRKDLARLeaeveqLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE 781
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 223 ARRTKhLQLTIQALQDELRTQRDLNHLLQQESGNRGAEHFTIELTEENfrrLQAEHDRQAKELFLLRKTLEEMELRIETQ 302
Cdd:TIGR02168 782 AEIEE-LEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES---LERRIAATERRLEDLEEQIEELSEDIESL 857
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 303 KQTLNARDESIKKLLEMLQSKglpsksLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELHRrsqLQPEPAKTK 382
Cdd:TIGR02168 858 AAEIEELEELIEELESELEAL------LNERASLEEALALLRSELEELSEELRELESKRSELRRELEE---LREKLAQLE 928
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1039746081 383 ALQTVIEMK-DTKIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQIE 431
Cdd:TIGR02168 929 LRLEGLEVRiDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLE 978
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
276-692 |
2.49e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 2.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 276 AEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLPSK------SLEDDNERTRRMAEAESQVSH 349
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQElealeaELAELPERLEELEERLEELRE 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 350 LEVILDQKEKENIHLREELhRRSQLQPEPAKTKALQTVIEmkdtKIASLERNIRDLEDEVQMLKANGvlntEDREEEIKQ 429
Cdd:COG4717 161 LEEELEELEAELAELQEEL-EELLEQLSLATEEELQDLAE----ELEELQQRLAELEEELEEAQEEL----EELEEELEQ 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 430 IEVYKSHSKfMKTKIDQLKQeLSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEE 509
Cdd:COG4717 232 LENELEAAA-LEERLKEARL-LLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQA 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 510 KESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRdkdkQLTNLKDRVKSLQTDSSNTDT 589
Cdd:COG4717 310 LPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQ----LEELEQEIAALLAEAGVEDEE 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 590 ALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKD-LKEKVNALQAELTEKESSLIDLKEHASSLAS--AGL 666
Cdd:COG4717 386 ELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEeLEEELEELEEELEELEEELEELREELAELEAelEQL 465
|
410 420
....*....|....*....|....*.
gi 1039746081 667 KRDSKLKSLEIAIEQKKEECNKLEAQ 692
Cdd:COG4717 466 EEDGELAELLQELEELKAELRELAEE 491
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
272-908 |
2.78e-04 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 44.74 E-value: 2.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 272 RRLQaEHDRQAKELFLLRKTLEEMELRIETQKQTLNArdesikklLEMLQSKGlpsksleddnertrrMAEAESQVSHL- 350
Cdd:pfam07111 70 RQLQ-ELRRLEEEVRLLRETSLQQKMRLEAQAMELDA--------LAVAEKAG---------------QAEAEGLRAALa 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 351 --EVILDQKEKENIHLREELHRRSQLQPEpAKTKALQTVIEMKDTKIASLERNIRDLEDEvqmlkangvlntedREEEIK 428
Cdd:pfam07111 126 gaEMVRKNLEEGSQRELEEIQRLHQEQLS-SLTQAHEEALSSLTSKAEGLEKSLNSLETK--------------RAGEAK 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 429 QIEVYKSHSkfmktkiDQLKQELSKKESELLALQTKLETLSN----------QNSDCKQHIEVLKESLTAKEQRAAILQT 498
Cdd:pfam07111 191 QLAEAQKEA-------ELLRKQLSKTQEELEAQVTLVESLRKyvgeqvppevHSQTWELERQELLDTMQHLQEDRADLQA 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 499 EVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEI-RDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQltnLKDRV 577
Cdd:pfam07111 264 TVELLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEFpKKCRSLLNRWREKVFALMVQLKAQDLEHRDSVKQ---LRGQV 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 578 KSLQTDSSNTDTALATLEEALSEK--ERIIERLKEQRERDDRERLEEIESFRKENKDLKEKvnalqaeltekessliDLK 655
Cdd:pfam07111 341 AELQEQVTSQSQEQAILQRALQDKaaEVEVERMSAKGLQMELSRAQEARRRQQQQTASAEE----------------QLK 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 656 EHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKAHNIEddSRMNPEFAdrLKQLDKEASYYRDECGKAQAEVD 735
Cdd:pfam07111 405 FVVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLSYAVRKVHTIK--GLMARKVA--LAQLRQESCPPPPPAPPVDADLS 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 736 RLLEILKEvenEKNDKDkkiAELERHMKDQNKKVANLKYNQQLEKKK----NAQLLEEVRRREDSMVDNSQHLQI----- 806
Cdd:pfam07111 481 LELEQLRE---ERNRLD---AELQLSAHLIQQEVGRAREQGEAERQQlsevAQQLEQELQRAQESLASVGQQLEVarqgq 554
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 807 EELMNALEKTRQELDATKARLA-STQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLA-------AISEKDANIALLE 878
Cdd:pfam07111 555 QESTEEAASLRQELTQQQEIYGqALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSlrqiqhrATQEKERNQELRR 634
|
650 660 670
....*....|....*....|....*....|....
gi 1039746081 879 LSASKKK----KTQEEVMALKREKDRLVHQLKQQ 908
Cdd:pfam07111 635 LQDEARKeegqRLARRVQELERDKNLMLATLQQE 668
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
392-566 |
2.81e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.76 E-value: 2.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 392 DTKIASLERNIRDLEDEVQMLKAngvlNTEDREEEIKQIevykshskfmKTKIDQLKQELSKKESELLALQTKLETLSNQ 471
Cdd:COG1579 16 DSELDRLEHRLKELPAELAELED----ELAALEARLEAA----------KTELEDLEKEIKRLELEIEEVEARIKKYEEQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 472 nsdckqhievLKESLTAKEQRAaiLQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINV 551
Cdd:COG1579 82 ----------LGNVRNNKEYEA--LQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE 149
|
170
....*....|....*
gi 1039746081 552 LQKKIENLQEQLRDK 566
Cdd:COG1579 150 ELAELEAELEELEAE 164
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
599-870 |
2.95e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 44.92 E-value: 2.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 599 SEKERIIERLKEQ-----RERDDRERLEEIESFRKENKDLKEKVNALQAELtEKESSLIDLKEHAS--SLASAGLKRDSK 671
Cdd:PRK05771 16 SYKDEVLEALHELgvvhiEDLKEELSNERLRKLRSLLTKLSEALDKLRSYL-PKLNPLREEKKKVSvkSLEELIKDVEEE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 672 LKSLEIAIEQKKEECNKLEAQLKK-AHNIEDdsrmnpefADRLKQLDKEASYYRDEC------GKAQAEVDRLLEILKEV 744
Cdd:PRK05771 95 LEKIEKEIKELEEEISELENEIKElEQEIER--------LEPWGNFDLDLSLLLGFKyvsvfvGTVPEDKLEELKLESDV 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 745 ENEKNDKDKK------IAELERHMKDQNKKVANLKY-NQQLEKKKNAQllEEVRRREDsmvdnsqhlQIEELMNALEKTR 817
Cdd:PRK05771 167 ENVEYISTDKgyvyvvVVVLKELSDEVEEELKKLGFeRLELEEEGTPS--ELIREIKE---------ELEEIEKERESLL 235
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1039746081 818 QELdatkarlastqqslAEKEAHLANLRIERRKQLEEILEmKQEALL-AAISEK 870
Cdd:PRK05771 236 EEL--------------KELAKKYLEELLALYEYLEIELE-RAEALSkFLKTDK 274
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
445-808 |
3.04e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 44.12 E-value: 3.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 445 DQLKQELSKKESELLALQTKLETL----SNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQ 520
Cdd:COG4372 2 DRLGEKVGKARLSLFGLRPKTGILiaalSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 521 LQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSE 600
Cdd:COG4372 82 LEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLES 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 601 KERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIE 680
Cdd:COG4372 162 LQEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDA 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 681 QKKEECNKLEAQLKKAHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIaeLER 760
Cdd:COG4372 242 LELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDA--LLA 319
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1039746081 761 HMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQIEE 808
Cdd:COG4372 320 ALLELAKKLELALAILLAELADLLQLLLVGLLDNDVLELLSKGAEAGV 367
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
198-856 |
3.12e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.83 E-value: 3.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 198 KEEAARMSVLKEQMRVSH-----EENQLLDARRTKHLQLTIQALQDELRTQRD-LNHLLQQESGNRGAEHFTIELTEENF 271
Cdd:pfam12128 245 KLQQEFNTLESAELRLSHlhfgyKSDETLIASRQEERQETSAELNQLLRTLDDqWKEKRDELNGELSAADAAVAKDRSEL 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 272 RRLQAEHDRQAKELFLLRKTLEEMELRIETQkqtLNARDESIKKLLEMLQSkglpsksLEDDNERtRRMAEAESQVSHLE 351
Cdd:pfam12128 325 EALEDQHGAFLDADIETAAADQEQLPSWQSE---LENLEERLKALTGKHQD-------VTAKYNR-RRSKIKEQNNRDIA 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 352 VILDQKEKenihLREELHRrsQLQPEPAKTKALQTVIEmKDTKIASLERNIRDLEDEVQMLKANGVLNTEDREEEIK-QI 430
Cdd:pfam12128 394 GIKDKLAK----IREARDR--QLAVAEDDLQALESELR-EQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLlQL 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 431 EVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQ------------------- 491
Cdd:pfam12128 467 ENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELqlfpqagtllhflrkeapd 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 492 ----------RAAILQTEVD---------------ALRLRL------------EEKESFLNKKTKQLQDLTEEKGTLAGE 534
Cdd:pfam12128 547 weqsigkvisPELLHRTDLDpevwdgsvggelnlyGVKLDLkridvpewaaseEELRERLDKAEEALQSAREKQAAAEEQ 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 535 IRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRV-KSLQTDSSNTDTALATLEEALSEKERIIERLKEQRE 613
Cdd:pfam12128 627 LVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKnKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQK 706
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 614 RDDRE-RLEEIESFRKENKDLKEKVNALQAELTEKESSL------IDlKEHASSLASAGL--KRDSKLKSLEIAIEQKKE 684
Cdd:pfam12128 707 EQKREaRTEKQAYWQVVEGALDAQLALLKAAIAARRSGAkaelkaLE-TWYKRDLASLGVdpDVIAKLKREIRTLERKIE 785
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 685 ECNKLEAQLKKAHNI--EDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHM 762
Cdd:pfam12128 786 RIAVRRQEVLRYFDWyqETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGL 865
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 763 KDQNKKVANLKYNQ-----QLEKKKNAQLLEEVRRREDSMVDNSQHlQIEELMNAL-EKTRQELDATKARLASTQQSLAE 836
Cdd:pfam12128 866 RCEMSKLATLKEDAnseqaQGSIGERLAQLEDLKLKRDYLSESVKK-YVEHFKNVIaDHSGSGLAETWESLREEDHYQND 944
|
730 740
....*....|....*....|
gi 1039746081 837 KEAHLANLRiERRKQLEEIL 856
Cdd:pfam12128 945 KGIRLLDYR-KLVPYLEQWF 963
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
490-697 |
3.56e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 3.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 490 EQRAAILQTEVDALRlRLEEKESFLNKKTKQLQDLTE------EKGTLAGEIRDMKDMLEV--KERKINVLQKKIENLQE 561
Cdd:COG4913 224 FEAADALVEHFDDLE-RAHEALEDAREQIELLEPIRElaeryaAARERLAELEYLRAALRLwfAQRRLELLEAELEELRA 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 562 QLRDkdkqltnlkdrvkslqtdssnTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIEsfrKENKDLKEKVNALQ 641
Cdd:COG4913 303 ELAR---------------------LEAELERLEARLDALREELDELEAQIRGNGGDRLEQLE---REIERLERELEERE 358
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1039746081 642 AELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKAH 697
Cdd:COG4913 359 RRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAAL 414
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
339-586 |
4.66e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.85 E-value: 4.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 339 RMAEAESQVSHLEVILDQKEkENIHLREELHRRSQlqpepAKTKALQTVIEMKDTKIASLERNIRDLEDEVQMLKANGVL 418
Cdd:PHA02562 175 KIRELNQQIQTLDMKIDHIQ-QQIKTYNKNIEEQR-----KKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVM 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 419 NTEDREEEIKQIEVYKSHskfMKTKIDQLKQELskkesellalqtKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQT 498
Cdd:PHA02562 249 DIEDPSAALNKLNTAAAK---IKSKIEQFQKVI------------KMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQH 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 499 EVDALRLRLEEkesfLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVK 578
Cdd:PHA02562 314 SLEKLDTAIDE----LEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELD 389
|
....*...
gi 1039746081 579 SLQTDSSN 586
Cdd:PHA02562 390 KIVKTKSE 397
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
269-912 |
4.84e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.27 E-value: 4.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 269 ENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKglpSKSLEDDNERTRRMAEAESQVS 348
Cdd:TIGR00606 189 ETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSY---ENELDPLKNRLKEIEHNLSKIM 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 349 HLE---VILDQKEKENIHLREELHRRsQLQPEPAKTKALQTVIEMKDTKIASLERNIRDLEDEVqmlkanGVLNTEDREE 425
Cdd:TIGR00606 266 KLDneiKALKSRKKQMEKDNSELELK-MEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQREL------EKLNKERRLL 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 426 EIKQIEVYKSHSKfMKTKIDQLKQELSKKESELLALQTKLET-----------------------LSNQNSDCKQHIEVL 482
Cdd:TIGR00606 339 NQEKTELLVEQGR-LQLQADRHQEHIRARDSLIQSLATRLELdgfergpfserqiknfhtlvierQEDEAKTAAQLCADL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 483 KESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGeirDMKDMLEVKERkinvLQKKIENLqeQ 562
Cdd:TIGR00606 418 QSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEG---SSDRILELDQE----LRKAEREL--S 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 563 LRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKeQRERDDRERLEEIESFRKENKDLKEKVNALQA 642
Cdd:TIGR00606 489 KAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRT-QMEMLTKDKMDKDEQIRKIKSRHSDELTSLLG 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 643 ELTEK---ESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKK-AHNIEDDSRMNPEFAD--RLKQL 716
Cdd:TIGR00606 568 YFPNKkqlEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSyEDKLFDVCGSQDEESDleRLKEE 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 717 DKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDS 796
Cdd:TIGR00606 648 IEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDE 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 797 MVdnsqhLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLAnlriERRKQLEEILEMKQEALLAAISEKDANIAL 876
Cdd:TIGR00606 728 ML-----GLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIE----EQETLLGTIMPEEESAKVCLTDVTIMERFQ 798
|
650 660 670
....*....|....*....|....*....|....*.
gi 1039746081 877 LELSASKKKKTQEEVMALKREKDRLVHQLKQQTQNR 912
Cdd:TIGR00606 799 MELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEK 834
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
210-574 |
6.02e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.18 E-value: 6.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 210 QMRVSH--EENQLLDARRTKHLqltiqalqDELRTQRDLnhlLQQESGNRGAEHFTIELTEENFRRLQAEHDRQA----- 282
Cdd:PRK04863 767 QWRYSRfpEVPLFGRAAREKRI--------EQLRAEREE---LAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAfeadp 835
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 283 -KELFLLRKTLEEME---LRIETQKQTLNARDESIKKLLEMLQsKGLPSKSLEDDNERTRRMAEAESQVSHLEV------ 352
Cdd:PRK04863 836 eAELRQLNRRRVELEralADHESQEQQQRSQLEQAKEGLSALN-RLLPRLNLLADETLADRVEEIREQLDEAEEakrfvq 914
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 353 ----ILDQKEKENIHLREELHRRSQLQPEPAKTKALQTVIEMKDTKIASLERNIRDL--EDEVQMLKANGVLNtedreee 426
Cdd:PRK04863 915 qhgnALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFsyEDAAEMLAKNSDLN------- 987
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 427 ikqievykshskfmktkiDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLR 506
Cdd:PRK04863 988 ------------------EKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVP 1049
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039746081 507 LEEKESflnkktKQLQDLTEEKGTLAGEIRDMKDMLEVK----ERKINVLQKKIENLQEQLRDKDKQLTNLK 574
Cdd:PRK04863 1050 ADSGAE------ERARARRDELHARLSANRSRRNQLEKQltfcEAEMDNLTKKLRKLERDYHEMREQVVNAK 1115
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
440-605 |
6.07e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 43.92 E-value: 6.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 440 MKTKIDQLKQELSKKESELLALQTKLETLSnqnsdckqhievlKESLTAKEQRAAILQTEVDALRLRLEEKEsflnkktk 519
Cdd:COG0542 402 VRMEIDSKPEELDELERRLEQLEIEKEALK-------------KEQDEASFERLAELRDELAELEEELEALK-------- 460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 520 qlQDLTEEKgTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDR--------------VKSLQTDSS 585
Cdd:COG0542 461 --ARWEAEK-ELIEEIQELKEELEQRYGKIPELEKELAELEEELAELAPLLREEVTEediaevvsrwtgipVGKLLEGER 537
|
170 180
....*....|....*....|
gi 1039746081 586 NTdtaLATLEEALseKERII 605
Cdd:COG0542 538 EK---LLNLEEEL--HERVI 552
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
264-411 |
6.40e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.61 E-value: 6.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 264 IELTEENFRrLQAEHDRQAKELfllRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKglpsksleddnertrrmaea 343
Cdd:PRK12704 60 LEAKEEIHK-LRNEFEKELRER---RNELQKLEKRLLQKEENLDRKLELLEKREEELEKK-------------------- 115
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039746081 344 ESQVSHLEVILDQKEKE--NIH--LREELHRRSQLQPEPAKTKALQTVIEMKDTKIASLernIRDLEDEVQM 411
Cdd:PRK12704 116 EKELEQKQQELEKKEEEleELIeeQLQELERISGLTAEEAKEILLEKVEEEARHEAAVL---IKEIEEEAKE 184
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
473-655 |
6.53e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.75 E-value: 6.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 473 SDCKQHIEVLKESLTAKEQRAAILQTevdalrlrLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMlevkerkinvl 552
Cdd:PRK11281 39 ADVQAQLDALNKQKLLEAEDKLVQQD--------LEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQA----------- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 553 QKKIENLQEQLRDKDKQlTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRE------RLEEIESF 626
Cdd:PRK11281 100 QAELEALKDDNDEETRE-TLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAAlyansqRLQQIRNL 178
|
170 180
....*....|....*....|....*....
gi 1039746081 627 RKENKDLKEKVNALQAELTEKESSLIDLK 655
Cdd:PRK11281 179 LKGGKVGGKALRPSQRVLLQAEQALLNAQ 207
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
314-921 |
6.68e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 43.89 E-value: 6.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 314 KKLLEMLQSKglpsksLEDDNERTRRMaEAESQVSHLEVILDQKEK-ENIHLREELHRRSQLqpepakTKALQTVIEMKD 392
Cdd:TIGR01612 695 KAKLDDLKSK------IDKEYDKIQNM-ETATVELHLSNIENKKNElLDIIVEIKKHIHGEI------NKDLNKILEDFK 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 393 TKIASLERNIRDL---EDEVQMLKA---------NGVLNTED-REEEIKQ-IEVYKSHSKFMKTKIDQLKQELSKKESEL 458
Cdd:TIGR01612 762 NKEKELSNKINDYakeKDELNKYKSkiseiknhyNDQINIDNiKDEDAKQnYDKSKEYIKTISIKEDEIFKIINEMKFMK 841
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 459 LALQTKLETLSNQNSDCKQHIEVLKESLT--AKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLageiR 536
Cdd:TIGR01612 842 DDFLNKVDKFINFENNCKEKIDSEHEQFAelTNKIKAEISDDKLNDYEKKFNDSKSLINEINKSIEEEYQNINTL----K 917
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 537 DMKDMLEVKERKINVLqKKIENLQEQLRDKDKQltNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLkeqrerdd 616
Cdd:TIGR01612 918 KVDEYIKICENTKESI-EKFHNKQNILKEILNK--NIDTIKESNLIEKSYKDKFDNTLIDKINELDKAFKDA-------- 986
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 617 rerleEIESFRKENKDLKEKVNALQAEL-TEKESSL---IDLKEHASSlasaglkrdsklksleiAIEQKKEECNKLEAQ 692
Cdd:TIGR01612 987 -----SLNDYEAKNNELIKYFNDLKANLgKNKENMLyhqFDEKEKATN-----------------DIEQKIEDANKNIPN 1044
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 693 LKKA-----HNIEDDsrMNPEFADRLKQLDKEasyyrdecgkaqaevdrlleILKEVENEKNDKDKKIAELERHMKDQNK 767
Cdd:TIGR01612 1045 IEIAihtsiYNIIDE--IEKEIGKNIELLNKE--------------------ILEEAEINITNFNEIKEKLKHYNFDDFG 1102
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 768 KVANLKYNQQLEK------------KKNAQLLEEVRRREDSMVDNSQhLQIEELMNALEKTRQELDATKarLASTQQSLA 835
Cdd:TIGR01612 1103 KEENIKYADEINKikddiknldqkiDHHIKALEEIKKKSENYIDEIK-AQINDLEDVADKAISNDDPEE--IEKKIENIV 1179
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 836 EKEAHLANLRIERRKQLEEILEM-KQEALLAAISE------KDANIALLELSASKKKKTQEEVMALKREKDRLvHQLKQQ 908
Cdd:TIGR01612 1180 TKIDKKKNIYDEIKKLLNEIAEIeKDKTSLEEVKGinlsygKNLGKLFLEKIDEEKKKSEHMIKAMEAYIEDL-DEIKEK 1258
|
650
....*....|...
gi 1039746081 909 TQNRMKLMADNYD 921
Cdd:TIGR01612 1259 SPEIENEMGIEMD 1271
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
423-915 |
6.81e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.63 E-value: 6.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 423 REEEIKQIEVYKSHSKFMKTKIDQLKQELSKkESELLALQTKLET------------LSNQNSDCKQHIEVLKESLTAKE 490
Cdd:pfam01576 10 KEEELQKVKERQQKAESELKELEKKHQQLCE-EKNALQEQLQAETelcaeaeemrarLAARKQELEEILHELESRLEEEE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 491 QRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQL 570
Cdd:pfam01576 89 ERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNL 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 571 TNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRerleeiesfrkENKDLKEKVNALQAELTEKESS 650
Cdd:pfam01576 169 AEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEG-----------ESTDLQEQIAELQAQIAELRAQ 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 651 LidlkehasslasaglkrDSKLKSLEIAIEQKKEECNKLEAQLKKAHNIEDdsrmnpEFADRLKQLDKEASYYrdecGKA 730
Cdd:pfam01576 238 L-----------------AKKEEELQAALARLEEETAQKNNALKKIRELEA------QISELQEDLESERAAR----NKA 290
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 731 QAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVD--NSQHLQIEE 808
Cdd:pfam01576 291 EKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEelTEQLEQAKR 370
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 809 LMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEIL----------EMKQEALLAAISEKDANIALLE 878
Cdd:pfam01576 371 NKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQarlseserqrAELAEKLSKLQSELESVSSLLN 450
|
490 500 510
....*....|....*....|....*....|....*..
gi 1039746081 879 LSASKKKKTQEEVMALKREKDRLVHQLKQQTQNRMKL 915
Cdd:pfam01576 451 EAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNL 487
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
398-627 |
6.90e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 43.35 E-value: 6.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 398 LERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQ 477
Cdd:pfam07888 36 LEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSE 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 478 HIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIE 557
Cdd:pfam07888 116 EKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQ 195
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039746081 558 NLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERL--KEQRERDDRERLEEIESFR 627
Cdd:pfam07888 196 ELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLnaSERKVEGLGEELSSMAAQR 267
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
482-693 |
7.52e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 7.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 482 LKESLTAKEQRAAILQTEVDALRLRLEEKEsflnkktKQLQDLTEEKGTLAGEirdmkdmlevkeRKINVLQKKIENLQE 561
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAE-------AALEEFRQKNGLVDLS------------EEAKLLLQQLSELES 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 562 QLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEAlsekeRIIERLKEQRERDDRERLEEIESFRKEN---KDLKEKVN 638
Cdd:COG3206 227 QLAEARAELAEAEARLAALRAQLGSGPDALPELLQS-----PVIQQLRAQLAELEAELAELSARYTPNHpdvIALRAQIA 301
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1039746081 639 ALQAEL-TEKESSLIDLKEHASSLASaglkRDSKLKSLEIAIEQKKEECNKLEAQL 693
Cdd:COG3206 302 ALRAQLqQEAQRILASLEAELEALQA----REASLQAQLAQLEARLAELPELEAEL 353
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
387-640 |
7.89e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.35 E-value: 7.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 387 VIEMKDTKIASLERNIRDLEDEVQMLKaNGVLNTEDREEEI--KQIEVYKSHSKFMKTKIDQLKqELSKKESELLALQTK 464
Cdd:PRK01156 470 IINHYNEKKSRLEEKIREIEIEVKDID-EKIVDLKKRKEYLesEEINKSINEYNKIESARADLE-DIKIKINELKDKHDK 547
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 465 LETLSNQNSDCkqHIEVLKESLTA-KEQRAAILQTEVDALRLRLEEKesflnkkTKQLQDLTEEKGTLAGEIRDMK---- 539
Cdd:PRK01156 548 YEEIKNRYKSL--KLEDLDSKRTSwLNALAVISLIDIETNRSRSNEI-------KKQLNDLESRLQEIEIGFPDDKsyid 618
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 540 -----------------DMLEVKERKINVLQKKIENLQEQLRDKD---KQLTNLKDRVKSLQTDSSNTDTALATLEEALS 599
Cdd:PRK01156 619 ksireieneannlnnkyNEIQENKILIEKLRGKIDNYKKQIAEIDsiiPDLKEITSRINDIEDNLKKSRKALDDAKANRA 698
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1039746081 600 EKERIIERLK------EQRERDDRERLEEIESFRKENKDLKEKVNAL 640
Cdd:PRK01156 699 RLESTIEILRtrinelSDRINDINETLESMKKIKKAIGDLKRLREAF 745
|
|
| ClyA_Cry6Aa-like |
cd22656 |
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes ... |
424-600 |
8.10e-04 |
|
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes pesticidal Cry6Aa toxin from Bacillus thuringiensis, one of the many parasporal crystal (Cry) toxins produced during the sporulation phase of growth. Many of these proteins are toxic to numerous insect species and have been effectively used as proteinaceous insecticides to directly kill insect pests; some have been used to control insect growth on transgenic agricultural plants. Cry6Aa exists as a protoxin, which is activated by cleavage using trypsin. Structure studies for Cry6Aa support a mechanism of action by pore formation, similar to cytolysin A (ClyA)-type alpha pore-forming toxins (alpha-PFTs) such as HblB, and bioassay and mutation studies show that Cry6Aa is an active pore-forming toxin. Cry6Aa shows atypical features compared to other members of alpha-PFTs, including internal repeat sequences and small loop regions within major alpha helices.
Pssm-ID: 439154 [Multi-domain] Cd Length: 309 Bit Score: 42.74 E-value: 8.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 424 EEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSD--CKQHIEVLKESLtaKEQRAAILQtevd 501
Cdd:cd22656 124 DDLLKEAKKYQDKAAKVVDKLTDFENQTEKDQTALETLEKALKDLLTDEGGaiARKEIKDLQKEL--EKLNEEYAA---- 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 502 ALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKkienLQEQLRDKDKQLTNLKDRVKSLQ 581
Cdd:cd22656 198 KLKAKIDELKALIADDEAKLAAALRLIADLTAADTDLDNLLALIGPAIPALEK----LQGAWQAIATDLDSLKDLLEDDI 273
|
170
....*....|....*....
gi 1039746081 582 TDSSNTDTALATLEEALSE 600
Cdd:cd22656 274 SKIPAAILAKLELEKAIEK 292
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
546-890 |
8.77e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.97 E-value: 8.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 546 ERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRErddrERLEEIES 625
Cdd:COG4372 30 SEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELA----QAQEELES 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 626 FRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKAHNIEDDSRM 705
Cdd:COG4372 106 LQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQAL 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 706 NPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKYNQQLEKKKNAQ 785
Cdd:COG4372 186 DELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELEL 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 786 LLEEVRRREDSMVDNSQHLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLA 865
Cdd:COG4372 266 AILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQL 345
|
330 340
....*....|....*....|....*
gi 1039746081 866 AISEKDANIALLELSASKKKKTQEE 890
Cdd:COG4372 346 LLVGLLDNDVLELLSKGAEAGVADG 370
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
594-901 |
1.27e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.57 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 594 LEEALSEKE---RIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEhasslasaglkrds 670
Cdd:pfam07888 36 LEECLQERAellQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEE-------------- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 671 KLKSLEIAIEQKKEECNKL----EAQLKKAHNIEDDSRMNPEfadrlKQLDKEAsyyrdECGKAQAEVDRLLEILKEVEN 746
Cdd:pfam07888 102 KYKELSASSEELSEEKDALlaqrAAHEARIRELEEDIKTLTQ-----RVLERET-----ELERMKERAKKAGAQRKEEEA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 747 EKNDKDKKIAELERHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQieelmnALEKTRQELDATKAR 826
Cdd:pfam07888 172 ERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEA------ENEALLEELRSLQER 245
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039746081 827 LASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKDRL 901
Cdd:pfam07888 246 LNASERKVEGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDRI 320
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
595-720 |
1.33e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.54 E-value: 1.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 595 EEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGL-------- 666
Cdd:COG2433 387 EKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEERreirkdre 466
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1039746081 667 --KRDSKLKSLEIAIEQKKEECNKLE---AQLKKAHNIEDDSRMNPefADRLKQLDKEA 720
Cdd:COG2433 467 isRLDREIERLERELEEERERIEELKrklERLKELWKLEHSGELVP--VKVVEKFTKEA 523
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
376-696 |
1.36e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 42.64 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 376 PEPAKTKALQTVIEMKDTKIASLerNIRDLEDEVQMLKANGVLntEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKE 455
Cdd:COG5185 198 AEPSGTVNSIKESETGNLGSEST--LLEKAKEIINIEEALKGF--QDPESELEDLAQTSDKLEKLVEQNTDLRLEKLGEN 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 456 SEllalqtKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQT--EVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAG 533
Cdd:COG5185 274 AE------SSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKAteSLEEQLAAAEAEQELEESKRETETGIQNLTAEIEQ 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 534 EIRDMKDMLEV--KERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSN-TDTALATLEEALSEKERIIERLKE 610
Cdd:COG5185 348 GQESLTENLEAikEEIENIVGEVELSKSSEELDSFKDTIESTKESLDEIPQNQRGyAQEILATLEDTLKAADRQIEELQR 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 611 QRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSliDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLE 690
Cdd:COG5185 428 QIEQATSSNEEVSKLLNELISELNKVMREADEESQSRLEE--AYDEINRSVRSKKEDLNEELTQIESRVSTLKATLEKLR 505
|
....*.
gi 1039746081 691 AQLKKA 696
Cdd:COG5185 506 AKLERQ 511
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
504-855 |
1.57e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 42.25 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 504 RLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQtD 583
Cdd:COG5185 162 KDIFGKLTQELNQNLKKLEIFGLTLGLLKGISELKKAEPSGTVNSIKESETGNLGSESTLLEKAKEIINIEEALKGFQ-D 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 584 SSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLAS 663
Cdd:COG5185 241 PESELEDLAQTSDKLEKLVEQNTDLRLEKLGENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKATESLEEQLAA 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 664 AGLKRD--SKLKSLEIAIEQKKEECNKLEAQLKKAHNIEDDSRMNPEFADRLKQLDKEASyyrdecgKAQAEVDRL-LEI 740
Cdd:COG5185 321 AEAEQEleESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVELSKSSEELD-------SFKDTIESTkESL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 741 LKEVENEKNDKDKKIAELERHMKDQNKKVANL-----KYNQQLE--KKKNAQLLEEVRRREDSMVDNSQHLQIEELMNAL 813
Cdd:COG5185 394 DEIPQNQRGYAQEILATLEDTLKAADRQIEELqrqieQATSSNEevSKLLNELISELNKVMREADEESQSRLEEAYDEIN 473
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1039746081 814 EKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEI 855
Cdd:COG5185 474 RSVRSKKEDLNEELTQIESRVSTLKATLEKLRAKLERQLEGV 515
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
419-646 |
2.11e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.93 E-value: 2.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 419 NTEDREEEIKQIevykshSKFMKTKIDQLKQELSKKESELLALQTKLETLSnqnsdckqhievLKESLTAKEQRAAILQT 498
Cdd:COG3206 165 NLELRREEARKA------LEFLEEQLPELRKELEEAEAALEEFRQKNGLVD------------LSEEAKLLLQQLSELES 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 499 EVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRdmkdmlevkerkINVLQKKIENLQEQLRDKDKQLTNLKDRVK 578
Cdd:COG3206 227 QLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPV------------IQQLRAQLAELEAELAELSARYTPNHPDVI 294
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039746081 579 SLQtdssntdtalATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKV---NALQAELTE 646
Cdd:COG3206 295 ALR----------AQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLaelPELEAELRR 355
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
679-890 |
2.24e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 2.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 679 IEQKKEEcnkleaqlkKAHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKA---QAEVDRLLEILKEVENEKNDKDK-- 753
Cdd:pfam17380 301 LRQEKEE---------KAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAmerERELERIRQEERKRELERIRQEEia 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 754 ----KIAELERHMKDQNKKvaNLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQIEELMNALEKTRQELDATKAR-LA 828
Cdd:pfam17380 372 meisRMRELERLQMERQQK--NERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAReME 449
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039746081 829 STQQSLAEKEAHLANLRIERRKQLEEILEM-KQEALLAAISEKDANIALLELSASKKKKTQEE 890
Cdd:pfam17380 450 RVRLEEQERQQQVERLRQQEEERKRKKLELeKEKRDRKRAEEQRRKILEKELEERKQAMIEEE 512
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
588-694 |
2.45e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.99 E-value: 2.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 588 DTALA-------TLEEALSEKERIIERLKEQRER----DDRERLEEIESFRKENKDLKEKVNALQAELtEKESSLIdlkE 656
Cdd:COG0542 396 DEAAArvrmeidSKPEELDELERRLEQLEIEKEAlkkeQDEASFERLAELRDELAELEEELEALKARW-EAEKELI---E 471
|
90 100 110
....*....|....*....|....*....|....*...
gi 1039746081 657 HASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLK 694
Cdd:COG0542 472 EIQELKEELEQRYGKIPELEKELAELEEELAELAPLLR 509
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
221-629 |
2.74e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.88 E-value: 2.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 221 LDARRTKHLQLTIQALQDELRTQRDLNHLLQQESGNRGAEHFTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIE 300
Cdd:pfam02463 613 LEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKE 692
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 301 TQKQTLNardesIKKLLEMLQSKGLPSKSLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREEL-HRRSQLQPEPA 379
Cdd:pfam02463 693 EILRRQL-----EIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSrLKKEEKEEEKS 767
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 380 KTKALQTVIEMKDTKIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELL 459
Cdd:pfam02463 768 ELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQK 847
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 460 ALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMK 539
Cdd:pfam02463 848 LEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEA 927
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 540 DMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTD----TALATLEEALSEKERIIERLKEQRERD 615
Cdd:pfam02463 928 EILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNlmaiEEFEEKEERYNKDELEKERLEEEKKKL 1007
|
410
....*....|....
gi 1039746081 616 DRERLEEIESFRKE 629
Cdd:pfam02463 1008 IRAIIEETCQRLKE 1021
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
394-897 |
2.79e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.96 E-value: 2.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 394 KIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKID---QLKQELSKKESELLALQtkletlSN 470
Cdd:TIGR00606 420 KERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDrilELDQELRKAERELSKAE------KN 493
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 471 QNSDCKqhievLKESLTAKEQRAAILQTevdalRLRLEEKESFLNKKT---KQLQDLTEEKGTLAGEIRDMKDMLEVKER 547
Cdd:TIGR00606 494 SLTETL-----KKEVKSLQNEKADLDRK-----LRKLDQEMEQLNHHTttrTQMEMLTKDKMDKDEQIRKIKSRHSDELT 563
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 548 KI-------NVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSE-KERIIERLKEQRERDDRER 619
Cdd:TIGR00606 564 SLlgyfpnkKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSyEDKLFDVCGSQDEESDLER 643
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 620 L-EEIESFRKENKDLKEKVNALQA---ELTEKESSLI-----------DLKEHASSLASAGLKRDSKLKSLEIAIEQKKE 684
Cdd:TIGR00606 644 LkEEIEKSSKQRAMLAGATAVYSQfitQLTDENQSCCpvcqrvfqteaELQEFISDLQSKLRLAPDKLKSTESELKKKEK 723
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 685 ECNKLEAQLKKAHNIED-DSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKdKKIAELERHMK 763
Cdd:TIGR00606 724 RRDEMLGLAPGRQSIIDlKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDV-TIMERFQMELK 802
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 764 DQNKKVAnlkynQQLEKKKNAQLLEEVRRREDSMVDNSQHL-QIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLA 842
Cdd:TIGR00606 803 DVERKIA-----QQAAKLQGSDLDRTVQQVNQEKQEKQHELdTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIG 877
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 1039746081 843 NlRIERRKQLEEILEMKQEALLAAISE-KDANIALLELSASKKKKTQEEVMALKRE 897
Cdd:TIGR00606 878 T-NLQRRQQFEEQLVELSTEVQSLIREiKDAKEQDSPLETFLEKDQQEKEELISSK 932
|
|
| CagA_N |
pfam18971 |
CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial ... |
503-791 |
3.06e-03 |
|
CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial virulence determinant and critical for gastric carcinogenesis. X-ray crystallographic analysis of the N-terminal CagA fragment (residues 1-876) revealed that the region has a structure comprised of three discrete domains. Domain I constitutes a mobile CagA N terminus, while Domain II tethers CagA to the plasma membrane by interacting with membrane phosphatidylserine. Domain III interacts intramolecularly with the intrinsically disordered C-terminal region, and this interaction potentiates the pathogenic scaffold/hub function of CagA.
Pssm-ID: 408741 [Multi-domain] Cd Length: 876 Bit Score: 41.68 E-value: 3.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 503 LRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDM-KDMLEVKER-KINVLQKKIENLQEQLRDKDkqltNLKDRV-KS 579
Cdd:pfam18971 561 LENKLTAKGLSLQEANKLIKDFLSSNKELAGKALNFnKAVAEAKSTgNYDEVKKAQKDLEKSLRKRE----HLEKEVeKK 636
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 580 LQTDSSNTDTALATlEEALSEKERIIERLKEQRERD-------------DRERLEEIESFRKENKDLKEKV----NALQA 642
Cdd:pfam18971 637 LESKSGNKNKMEAK-AQANSQKDEIFALINKEANRDaraiaytqnlkgiKRELSDKLEKISKDLKDFSKSFdefkNGKNK 715
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 643 ELTEKESSLIDLKehaSSLASAGLKRD--SKLKSLEIAIEQKKEECNKLEAQLKKA----HNIEDDSRMNPEFADRLKQL 716
Cdd:pfam18971 716 DFSKAEETLKALK---GSVKDLGINPEwiSKVENLNAALNEFKNGKNKDFSKVTQAksdlENSVKDVIINQKVTDKVDNL 792
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039746081 717 DKEASyyrdeCGKAQAEVDRLLEILKEVENEKNDKdkkiaelerhMKDQNKKvanlkyNQQLEKKKNAQLLEEVR 791
Cdd:pfam18971 793 NQAVS-----VAKAMGDFSRVEQVLADLKNFSKEQ----------LAQQAQK------NEDFNTGKNSELYQSVK 846
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
380-602 |
3.82e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 3.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 380 KTKALQTVIEMKDTKIASLERNIRDLEDEVQMLKANgvlnTEDREEEIKQIEvykshskfmkTKIDQLKQELSKKESELL 459
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEE----YNELQAELEALQ----------AEIDKLQAEIAEAEAEIE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 460 ALQTKLETL---SNQNSDCKQHIEVLKESLTAKE--QRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGE 534
Cdd:COG3883 83 ERREELGERaraLYRSGGSVSYLDVLLGSESFSDflDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEAL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039746081 535 IRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKE 602
Cdd:COG3883 163 KAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
754-908 |
4.23e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 40.85 E-value: 4.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 754 KIAELERHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQIEElmnALEKTRQELDATKARLASTQQS 833
Cdd:PRK12705 37 RILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEE---QLDARAEKLDNLENQLEEREKA 113
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039746081 834 LAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKDRLVHQLKQQ 908
Cdd:PRK12705 114 LSARELELEELEKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEADLEAERKAQNILAQAMQR 188
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
618-878 |
4.90e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 4.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 618 ERLEEIESFRKENKDLKEKVNALQAELT---EKESSLIDL----------KEHASSLASAGLKRDSKLKSLEIA------ 678
Cdd:COG3206 101 DKLNLDEDPLGEEASREAAIERLRKNLTvepVKGSNVIEIsytspdpelaAAVANALAEAYLEQNLELRREEARkalefl 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 679 ---IEQKKEECNKLEAQL---KKAHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILK---------- 742
Cdd:COG3206 181 eeqLPELRKELEEAEAALeefRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGsgpdalpell 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 743 ------EVENEKNDKDKKIAELERHMKDQNKKVANLKynQQLEKKKnAQLLEEVRRREDSmvdnsqhlqIEELMNALEKT 816
Cdd:COG3206 261 qspviqQLRAQLAELEAELAELSARYTPNHPDVIALR--AQIAALR-AQLQQEAQRILAS---------LEAELEALQAR 328
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039746081 817 RQELDATKARLASTQQSLAEKEAHLANLR--IERRKQLEEILEMKQEALLAAISEKDANIALLE 878
Cdd:COG3206 329 EASLQAQLAQLEARLAELPELEAELRRLEreVEVARELYESLLQRLEEARLAEALTVGNVRVID 392
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
443-910 |
5.11e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.98 E-value: 5.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 443 KIDQLKQELSKKESELLALQTkletlsnqnsdckqhievLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQ 522
Cdd:pfam12128 242 EFTKLQQEFNTLESAELRLSH------------------LHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKR 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 523 D-LTEEKGTLAGEIRDMKDMLEV-KERKINVLQKKIENLQEQLrdkdkqltnlkDRVKSLQTDSSNTDTALATLEEALSE 600
Cdd:pfam12128 304 DeLNGELSAADAAVAKDRSELEAlEDQHGAFLDADIETAAADQ-----------EQLPSWQSELENLEERLKALTGKHQD 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 601 KERIIERLKEQRERDDRERLEEIESFRKENKDLKEK--------VNALQAELTEK-ESSLIDLKEHASSLASAGLKRDSK 671
Cdd:pfam12128 373 VTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRqlavaeddLQALESELREQlEAGKLEFNEEEYRLKSRLGELKLR 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 672 LKSLEIA------IEQKKEECNK----LEAQLKKAHNIEDDSR----MNPEFADRLKQLDKEASYYRDECGKAQAEVD-- 735
Cdd:pfam12128 453 LNQATATpelllqLENFDERIERareeQEAANAEVERLQSELRqarkRRDQASEALRQASRRLEERQSALDELELQLFpq 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 736 --RLLEIL-KEVENEKNDKDKKIAELERHMKDQNKKVANLKYN------------QQLEKKKNAQLLEEVRRREDSMVD- 799
Cdd:pfam12128 533 agTLLHFLrKEAPDWEQSIGKVISPELLHRTDLDPEVWDGSVGgelnlygvkldlKRIDVPEWAASEEELRERLDKAEEa 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 800 -NSQHLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRkqleeilemkqeallaaiSEKDaniALLE 878
Cdd:pfam12128 613 lQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQ------------------SEKD---KKNK 671
|
490 500 510
....*....|....*....|....*....|..
gi 1039746081 879 LSASKKKKTQEEVMALKREKDRLVHQLKQQTQ 910
Cdd:pfam12128 672 ALAERKDSANERLNSLEAQLKQLDKKHQAWLE 703
|
|
| XRN1 |
COG5049 |
5'-3' exonuclease [Replication, recombination and repair]; |
246-448 |
5.18e-03 |
|
5'-3' exonuclease [Replication, recombination and repair];
Pssm-ID: 227382 [Multi-domain] Cd Length: 953 Bit Score: 40.68 E-value: 5.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 246 LNHLLQQESGNRGAEHFTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGL 325
Cdd:COG5049 366 LAILGSFEDDIFKKDHIQEERKNESLERFSLRKERKEGLKGMPRVVYEQKKLIGSIKPTLMDQLQEKKSPDLPDEEFIDT 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 326 PSKSLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELHRRSQLQPEPAKTKALQTVIEMKDTKIASlernirDL 405
Cdd:COG5049 446 LALPKDLDMKNHELFLKRFANDLGLSISKAIKSKGNYSLEMDIASDSPDEDEEEFESEVDSIRKIPDKYVNI------IV 519
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1039746081 406 EDEVQmlkaNGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLK 448
Cdd:COG5049 520 EEEEE----NETEKTVNLRFPGWKERYYTSKLHFTTDSEEKIR 558
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
621-851 |
5.39e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 5.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 621 EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKAHNIE 700
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 701 DDSRmnPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKvanlkyNQQLEK 780
Cdd:COG4942 100 EAQK--EELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAL------RAELEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039746081 781 KKN--AQLLEEVRRREDSMvdNSQHLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQ 851
Cdd:COG4942 172 ERAelEALLAELEEERAAL--EALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
503-643 |
6.24e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 40.00 E-value: 6.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 503 LRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDmlevkerkinVLQKKIENLQEQLRDKDK----QLTNLKDRVK 578
Cdd:smart00787 145 LKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKD----------ALEEELRQLKQLEDELEDcdptELDRAKEKLK 214
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039746081 579 SLQTDSSNTDTALATLEEALSEKERIIERLKEQRErDDRERLEEIESFRKENKD--------LKEKVNALQAE 643
Cdd:smart00787 215 KLLQEIMIKVKKLEELEEELQELESKIEDLTNKKS-ELNTEIAEAEKKLEQCRGftfkeiekLKEQLKLLQSL 286
|
|
| Lebercilin |
pfam15619 |
Ciliary protein causing Leber congenital amaurosis disease; Lebercilin is a family of ... |
443-603 |
6.27e-03 |
|
Ciliary protein causing Leber congenital amaurosis disease; Lebercilin is a family of eukaryotic ciliary proteins. Mutations in the gene, LCA5, are implicated in the disease Leber congenital amaurosis. In photoreceptors, lebercilin is uniquely localized at the cilium that bridges the inner and outer segments. Lebercilin functions as an integral element of selective protein transport through photoreceptor cilia. Lebercilin specifically interacts with the intraflagellar transport (IFT), and disruption of IFT can lead to Leber congenital amaurosis.
Pssm-ID: 464776 [Multi-domain] Cd Length: 193 Bit Score: 39.12 E-value: 6.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 443 KIDQLKQELSKKESELLALQTKLETL--------------SNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLE 508
Cdd:pfam15619 12 KIKELQNELAELQSKLEELRKENRLLkrlqkrqekalgkyEGTESELPQLIARHNEEVRVLRERLRRLQEKERDLERKLK 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 509 EKESFL---NKKTKQLQDLTEEKG-----TLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRdkdKQLTNLKDRVKSL 580
Cdd:pfam15619 92 EKEAELlrlRDQLKRLEKLSEDKNlaereELQKKLEQLEAKLEDKDEKIQDLERKLELENKSFR---RQLAAEKKKHKEA 168
|
170 180
....*....|....*....|...
gi 1039746081 581 QTDSSNTDTALATLEEALSEKER 603
Cdd:pfam15619 169 QEEVKILQEEIERLQQKLKEKER 191
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
428-555 |
6.35e-03 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 39.79 E-value: 6.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 428 KQIEVYKSHSKFMKTKIDQLKQELSKKESE----------LLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQ 497
Cdd:pfam15905 184 GKLQVTQKNLEHSKGKVAQLEEKLVSTEKEkieeksetekLLEYITELSCVSEQVEKYKLDIAQLEELLKEKNDEIESLK 263
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039746081 498 TEVDALRLRLEEKESFLNKKTKQLQDLTEEK--------GTLAGEIRDMKDMLEVKERKINVLQKK 555
Cdd:pfam15905 264 QSLEEKEQELSKQIKDLNEKCKLLESEKEELlreyeekeQTLNAELEELKEKLTLEEQEHQKLQQK 329
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
149-391 |
7.12e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 7.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 149 DLQAQLKELQRENDLLRKELDIKDSKLGSSMNSIKTFWSPELKKERVLRKEEAARMSVLKEQMRVSHEENQLLD--ARRT 226
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAelEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 227 KHLQLTIQALQdELRTQRDLNHLLQQESGNRGAEHFTIelteenFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTL 306
Cdd:COG4942 104 EELAELLRALY-RLGRQPPLALLLSPEDFLDAVRRLQY------LKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 307 NARDESIKKLLEMLQSkglpsksleDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELHRRSQLQPEPAKTKALQT 386
Cdd:COG4942 177 EALLAELEEERAALEA---------LKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
....*
gi 1039746081 387 VIEMK 391
Cdd:COG4942 248 FAALK 252
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
539-720 |
7.67e-03 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 39.99 E-value: 7.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 539 KDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKdrvKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRE 618
Cdd:pfam05262 198 RDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQ---QKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQ 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 619 RLEEiesfrkenkdLKEKVNALQAELTEKESSLIDLKEHASSlasaGLKRDSKlksleiaIEQKKEECNKLEAQLKKAHN 698
Cdd:pfam05262 275 VAEN----------QKREIEKAQIEIKKNDEEALKAKDHKAF----DLKQESK-------ASEKEAEDKELEAQKKREPV 333
|
170 180
....*....|....*....|..
gi 1039746081 699 IEDDSRMNPEFADRLKQLDKEA 720
Cdd:pfam05262 334 AEDLQKTKPQVEAQPTSLNEDA 355
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
449-835 |
7.88e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.33 E-value: 7.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 449 QELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQ---RAAILqtEVDALRLRLEEKESFLNKKTKQLQDLT 525
Cdd:PRK04863 837 AELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRllpRLNLL--ADETLADRVEEIREQLDEAEEAKRFVQ 914
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 526 EEKGTLAgEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQ----TDSSNTDTALATLEEALSEK 601
Cdd:PRK04863 915 QHGNALA-QLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAhfsyEDAAEMLAKNSDLNEKLRQR 993
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 602 eriIERLKEQRERDdRERLEEIES-FRKENK---DLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKlkSLEI 677
Cdd:PRK04863 994 ---LEQAEQERTRA-REQLRQAQAqLAQYNQvlaSLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRD--ELHA 1067
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 678 AIEQKKEECNKLEAQLKKAhniedDSRMNpEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAE 757
Cdd:PRK04863 1068 RLSANRSRRNQLEKQLTFC-----EAEMD-NLTKKLRKLERDYHEMREQVVNAKAGWCAVLRLVKDNGVERRLHRRELAY 1141
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 758 L----ERHMKDqnKKVANLKYNQQlekkKNAQLLEEVRRREDS---------MVDNSQHLQ----------------IEE 808
Cdd:PRK04863 1142 LsadeLRSMSD--KALGALRLAVA----DNEHLRDVLRLSEDPkrperkvqfYIAVYQHLRerirqdiirtddpveaIEQ 1215
|
410 420
....*....|....*....|....*..
gi 1039746081 809 LMNALEKTRQELDATKARLASTQQSLA 835
Cdd:PRK04863 1216 MEIELSRLTEELTSREQKLAISSESVA 1242
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
622-839 |
8.63e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 8.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 622 EIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKK--AHNI 699
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEraRALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 700 EDDSRMNP-----------EFADRLKQLDKEASYYRDecgkaqaevdrlleILKEVENEKNDKDKKIAELERHMKDQNKK 768
Cdd:COG3883 97 RSGGSVSYldvllgsesfsDFLDRLSALSKIADADAD--------------LLEELKADKAELEAKKAELEAKLAELEAL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039746081 769 VANLKYNQ-QLEKKKNAQ--LLEEVRRREDSMVDNSQHLQIEELMNALEKTRQELDATKARLASTQQSLAEKEA 839
Cdd:COG3883 163 KAELEAAKaELEAQQAEQeaLLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAA 236
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
288-614 |
9.03e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.16 E-value: 9.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 288 LRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLpsksleDDNERTRRMAEAESQVSHLEVILDQK-------EKE 360
Cdd:pfam01576 220 LQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETA------QKNNALKKIRELEAQISELQEDLESEraarnkaEKQ 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 361 NIHLREELHR-RSQLQPEPAKTKALQTVIEMKDTKIASLERNI----RDLEDEVQMLKANGVLNTEDREEEIKQievyks 435
Cdd:pfam01576 294 RRDLGEELEAlKTELEDTLDTTAAQQELRSKREQEVTELKKALeeetRSHEAQLQEMRQKHTQALEELTEQLEQ------ 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 436 hSKFMKTKIDQLKQELskkESELLALQTKLETLSNQNSDC---KQHIEVLKESLTAK-----------EQRAAILQTEVD 501
Cdd:pfam01576 368 -AKRNKANLEKAKQAL---ESENAELQAELRTLQQAKQDSehkRKKLEGQLQELQARlseserqraelAEKLSKLQSELE 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 502 ALRLRLEEKESFLNKKTK--------------QLQDLTEEKGTLAGEIRDMKD-------MLEVKERKINVLQKKIENLQ 560
Cdd:pfam01576 444 SVSSLLNEAEGKNIKLSKdvsslesqlqdtqeLLQEETRQKLNLSTRLRQLEDernslqeQLEEEEEAKRNVERQLSTLQ 523
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1039746081 561 EQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRER 614
Cdd:pfam01576 524 AQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNR 577
|
|
| MPS2 |
pfam17060 |
Monopolar spindle protein 2; Is a fungal transmembrane protein which is part of the component ... |
480-615 |
9.39e-03 |
|
Monopolar spindle protein 2; Is a fungal transmembrane protein which is part of the component of the spindle pole body (SPB) required for the insertion of the nascent SPB into the nuclear envelope and for the proper execution of spindle pole body (SPB) duplication. It seems that Mps2-Spc24 interaction may contribute to the localization of Spc24 and other kinetochore components to the inner plaque of the SPB.
Pssm-ID: 407228 [Multi-domain] Cd Length: 340 Bit Score: 39.57 E-value: 9.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 480 EVLKESLTAKEQRAAILQTEVDALRLRLEEKES------FLNKKTKQLQDLTEekgTLAGEIRDMKDMLEVKERKINVLQ 553
Cdd:pfam17060 105 ELKEDVKSSPRSEADSLGTPIKVDLLRNLKPQEspetprRINRKYKSLELRVE---SMKDELEFKDETIMEKDRELTELT 181
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039746081 554 KKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDT----ALATLEEALSEKERIIERLKEQRERD 615
Cdd:pfam17060 182 STISKLKDKYDFLSREFEFYKQHHEHGGNNSIKTATkhefIISELKRKLQEQNRLIRILQEQIQFD 247
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
238-651 |
9.71e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 39.67 E-value: 9.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 238 DELRTQRD----LNHLLQQESGNRGAEHFTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESI 313
Cdd:pfam19220 20 EDLRSLKAdfsqLIEPIEAILRELPQAKSRLLELEALLAQERAAYGKLRRELAGLTRRLSAAEGELEELVARLAKLEAAL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 314 KkllemlqskglpskSLEDDNERTR-RMAEAESQVSHLEVILDQKEKENIHLREELhrrsqlqpepaktKALQTVIEMKD 392
Cdd:pfam19220 100 R--------------EAEAAKEELRiELRDKTAQAEALERQLAAETEQNRALEEEN-------------KALREEAQAAE 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 393 TKIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSnqn 472
Cdd:pfam19220 153 KALQRAEGELATARERLALLEQENRRLQALSEEQAAELAELTRRLAELETQLDATRARLRALEGQLAAEQAERERAE--- 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 473 sdckqhievlkeslTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVL 552
Cdd:pfam19220 230 --------------AQLEEAVEAHRAERASLRMKLEALTARAAATEQLLAEARNQLRDRDEAIRAAERRLKEASIERDTL 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746081 553 QKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKD 632
Cdd:pfam19220 296 ERRLAGLEADLERRTQQFQEMQRARAELEERAEMLTKALAAKDAALERAEERIASLSDRIAELTKRFEVERAALEQANRR 375
|
410
....*....|....*....
gi 1039746081 633 LKEKVNALQAELTEKESSL 651
Cdd:pfam19220 376 LKEELQRERAERALAQGAL 394
|
|
| |
