|
Name |
Accession |
Description |
Interval |
E-value |
| GOLGA2L5 |
pfam15070 |
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein ... |
376-900 |
0e+00 |
|
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein family remains unknown. This family of proteins is thought to be found in the Golgi apparatus of eukaryotes.
Pssm-ID: 464485 [Multi-domain] Cd Length: 521 Bit Score: 709.91 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 376 QLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPP--AGP 453
Cdd:pfam15070 1 QLMESLKQLQTERDQYAENLKEEGAVWQQKMQQLSEQVRTLREEKERSVSQVQELETSLAELKNQAAVPPAEEEQppAGP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 454 SEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRA 533
Cdd:pfam15070 81 SEEEQRLQEEAEQLQKELEALAGQLQAQVQDNEQLSRLNQEQEQRLLELERAAERWGEQAEDRKQILEDMQSDRATISRA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 534 LSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSH 613
Cdd:pfam15070 161 LSQNRELKEQLAELQNGFVKLTNENMELTSALQSEQHVKKELAKKLGQLQEELGELKETLELKSQEAQSLQEQRDQYLAH 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 614 LQQYAAAYQqhlaayeQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQENQQLQAQLSL 693
Cdd:pfam15070 241 LQQYVAAYQ-------QLASEKEELHKQYLLQTQLMDRLQHEEVQGKVAAEMARQELQETQERLEALTQQNQQLQAQLSL 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 694 LVLPGE-GDVDQEEEDEEVPQSSLAIPEDLDSREAMVAFFNAAIARAEEEQARLRVQLKEQKARCRSLSHLAAPVQSKLE 772
Cdd:pfam15070 314 LANPGEgDGLESEEEEEEAPRPSLSIPEDFESREAMVAFFNSALAQAEEERAELRRQLKEQKRRCRRLAQQAAPAQEEPE 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 773 KEAVVPRNVDDSASEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELEHCCIQLSGETDTIGEYIALYQNQRAVLKAR 852
Cdd:pfam15070 394 HEAHAPGTGGDSVPVEVHQALQVAMEKLQSRFTELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAILKQR 473
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 1039762465 853 HLEKEEYISRLAQDKEEMKVKLLELQELVLRLVNERNEWQGKFLAVSQ 900
Cdd:pfam15070 474 HREKEEYISRLAQDKEEMKVKLLELQELVLRLVGERNEWYGKYLAAAQ 521
|
|
| GM130_C |
pfam19046 |
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 ... |
945-990 |
4.83e-27 |
|
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 protein that is bound by the GRASP65 PDZ domain pfam04495.
Pssm-ID: 465957 Cd Length: 46 Bit Score: 104.00 E-value: 4.83e-27
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1039762465 945 APHENPTAQQIMQLLREIQNPRERPGLGSNPCIPFFYRADENDEVK 990
Cdd:pfam19046 1 SPPENPTAQQIMQLLPEIQNPQEHPGLGSNPCIPFFYRADENDEVK 46
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
260-890 |
1.11e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 95.00 E-value: 1.11e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 260 VGELERTLSTVSTQQKQADRYnKDLTKERDALKLELYKNSKsnEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEm 339
Cdd:COG1196 195 LGELERQLEPLERQAEKAERY-RELKEELKELEAELLLLKL--RELEAELEELEAELEELEAELEELEAELAELEAELE- 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 340 selllqqfssqssaaggnEQLQHAMEERAQLETHVSQLMESLKQLqverdqyaENLKGESAMWQQRVQQMAEQVHTLKEE 419
Cdd:COG1196 271 ------------------ELRLELEELELELEEAQAEEYELLAEL--------ARLEQDIARLEERRRELEERLEELEEE 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 420 KEHRERQVQELETSLAALRSQMEEPPPPEPpagpsEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRL 499
Cdd:COG1196 325 LAELEEELEELEEELEELEEELEEAEEELE-----EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 500 LELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKL 579
Cdd:COG1196 400 AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 580 GELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQG 659
Cdd:COG1196 480 AELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 660 KMAAELARQELQEAQERLKATSQENQQLQAQLSLLVLPGEGDVDQEEEDEEVPQSSLAIPEDLDSREAMVAFFNAAIARA 739
Cdd:COG1196 560 AAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRA 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 740 EEEQARLRVQLkeqkarcrslshLAAPVQSKLEKEAVVPRNVDDSASEESNQALHVAMEKLQSRFLEVMQEKVELKERVE 819
Cdd:COG1196 640 VTLAGRLREVT------------LEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEER 707
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039762465 820 ELEHCCIQLSGETDTIGEYIALYQNQRAVLKARHLEKEEYISRLAQDKEEMKVKLLELQELVLRLVNERNE 890
Cdd:COG1196 708 ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
149-679 |
6.68e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.72 E-value: 6.68e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 149 ELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDYQQkLAKEQGSLREQLQVHIQTIGILVSEKAEL 228
Cdd:TIGR02168 299 RLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEE-LKEELESLEAELEELEAELEELESRLEEL 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 229 QTALAHTQQAARQKAGESEDLASRLQSSRQRV----GELERTLSTVSTQQKQADRYNKDLTKER-DALKLELYKNSKSNE 303
Cdd:TIGR02168 378 EEQLETLRSKVAQLELQIASLNNEIERLEARLerleDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQEELE 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 304 DLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFS-----------SQSSAAGGNEQLQHAMEERAQLET 372
Cdd:TIGR02168 458 RLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgfsegvkallkNQSGLSGILGVLSELISVDEGYEA 537
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 373 HVS-------------------QLMESLKQ----------LQVERDQYAENLKGESAMWQQRVQQMAEQVHT-------- 415
Cdd:TIGR02168 538 AIEaalggrlqavvvenlnaakKAIAFLKQnelgrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKfdpklrka 617
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 416 -------------------LKEEKEHRERQV---------------QELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQ 461
Cdd:TIGR02168 618 lsyllggvlvvddldnaleLAKKLRPGYRIVtldgdlvrpggvitgGSAKTNSSILERRREIEELEEKIEELEEKIAELE 697
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 462 GEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNR--- 538
Cdd:TIGR02168 698 KALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEeel 777
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 539 -ELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQY 617
Cdd:TIGR02168 778 aEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESL 857
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039762465 618 AaayqqhlAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKA 679
Cdd:TIGR02168 858 A-------AEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSE 912
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
169-683 |
1.55e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.44 E-value: 1.55e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 169 KQLSSTIEELKQQNQDTLDQLEKEKKDYQQkLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESED 248
Cdd:COG1196 242 EELEAELEELEAELEELEAELAELEAELEE-LRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 249 LASRLQSSRQRVGELERTLSTVSTQQKQADrynkdltKERDALKLELyknsksnEDLRQQNSELEEKLRVLVAE-KAAAQ 327
Cdd:COG1196 321 LEEELAELEEELEELEEELEELEEELEEAE-------EELEEAEAEL-------AEAEEALLEAEAELAEAEEElEELAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 328 LGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQ 407
Cdd:COG1196 387 ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLA 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 408 QMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHkeLERLTGQLRAQVQDNES 487
Cdd:COG1196 467 ELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVA--VLIGVEAAYEAALEAAL 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 488 LSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRE-------LKEQLAELQNGFVRLTNENME 560
Cdd:COG1196 545 AAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAigaavdlVASDLREADARYYVLGDTLLG 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 561 ITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHK 640
Cdd:COG1196 625 RTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEE 704
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 1039762465 641 QLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQE 683
Cdd:COG1196 705 EERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEEL 747
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
260-890 |
3.75e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.40 E-value: 3.75e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 260 VGELERTLSTVSTQQKQADRYnKDLTKERDALKLELYKNS-----KSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQ 334
Cdd:TIGR02168 195 LNELERQLKSLERQAEKAERY-KELKAELRELELALLVLRleelrEELEELQEELKEAEEELEELTAELQELEEKLEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 335 KK---LEMSELLLQQ--FSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLkgesAMWQQRVQQM 409
Cdd:TIGR02168 274 LEvseLEEEIEELQKelYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEEL----AELEEKLEEL 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 410 AEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEppAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESL- 488
Cdd:TIGR02168 350 KEELESLEAELEELEAELEELESRLEELEEQLETLRSKV--AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELl 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 489 ----SHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSA 564
Cdd:TIGR02168 428 kkleEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEG 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 565 LQSEQHVKKELARKLGELQER--------------LGELKETVELKSQEAQglqeqrDQCLSHLQQYAAAYQQHLAAYEQ 630
Cdd:TIGR02168 508 VKALLKNQSGLSGILGVLSELisvdegyeaaieaaLGGRLQAVVVENLNAA------KKAIAFLKQNELGRVTFLPLDSI 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 631 LTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQ----------ELQEAQERLK---------------------- 678
Cdd:TIGR02168 582 KGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvdDLDNALELAKklrpgyrivtldgdlvrpggvi 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 679 --ATSQENQQLQAQLSLLVLPGEGDVDQEEEDEEVPQSSLAIPEDLDSREAMVAFFNAAIARAEEEQARLRVQLKEQKAR 756
Cdd:TIGR02168 662 tgGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 757 CRSLSHLAAPVQSKLEkEAVVPRNVDDSASEESNQALHVA---MEKLQSRFLEVMQEKVELKERVEELEHCCIQLSGETD 833
Cdd:TIGR02168 742 VEQLEERIAQLSKELT-ELEAEIEELEERLEEAEEELAEAeaeIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA 820
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039762465 834 TIGEYIALYQNQRA-------VLKARHLEKEEYISRLAQDKEEMKVKLLELQELVLRLVNERNE 890
Cdd:TIGR02168 821 NLRERLESLERRIAaterrleDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAS 884
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
303-601 |
1.51e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.09 E-value: 1.51e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 303 EDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAggNEQLQHAMEERAQLETHVSQLMESLK 382
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISAL--RKDLARLEAEVEQLEERIAQLSKELT 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 383 QLQVERDQYAENLKGESAMWQQRVQQMAEqvhtLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAgpSEAEEQLQG 462
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAEAEAEIEE----LEAQIEQLKEELKALREALDELRAELTLLNEEAANL--RERLESLER 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 463 EVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQ----AEERKQILESMQSDRTTISRALSQNR 538
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNEraslEEALALLRSELEELSEELRELESKRS 911
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039762465 539 ELKEQLAELQNgfvRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQ 601
Cdd:TIGR02168 912 ELRRELEELRE---KLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEAR 971
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
149-879 |
1.02e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.32 E-value: 1.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 149 ELENRYQELAVALDssyvtNKQLSSTIEELKQQNqDTLDQLEKEKKDYQQKLAKEQgslrEQLQVHIQTIGILVSEKAEL 228
Cdd:TIGR02168 210 EKAERYKELKAELR-----ELELALLVLRLEELR-EELEELQEELKEAEEELEELT----AELQELEEKLEELRLEVSEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 229 QTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQ 308
Cdd:TIGR02168 280 EEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 309 NSELEEKLRVLVAEKAAAQLGVEELQKKLemSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVER 388
Cdd:TIGR02168 360 LEELEAELEELESRLEELEEQLETLRSKV--AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 389 DQYA-ENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPA-GPSEAEEQLQGEVEQ 466
Cdd:TIGR02168 438 LQAElEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLeGFSEGVKALLKNQSG 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 467 LHKELERLTGQLRAQ-------------------VQDNES----LSHLNREQEGRLLELEREAQRWSEQAEERKQILESM 523
Cdd:TIGR02168 518 LSGILGVLSELISVDegyeaaieaalggrlqavvVENLNAakkaIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNI 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 524 QSDRTTISRALSQNRELKEQLAELQNGFV------------RLTNENMEI--------------TSALQSEQHVKKELAR 577
Cdd:TIGR02168 598 EGFLGVAKDLVKFDPKLRKALSYLLGGVLvvddldnalelaKKLRPGYRIvtldgdlvrpggviTGGSAKTNSSILERRR 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 578 KLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEV 657
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 658 QGKMAAELARQELQEAQERLKATSQENQQLQAQLSLLVlpgegdvdqeeedeevpqsslaipEDLDSREAMVAFFNAAIA 737
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK------------------------EELKALREALDELRAELT 813
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 738 RAEEEQARLRVQLKEQKARCRSLSHLAAPVQSKLEKEavvprNVDDSASEESNQALHVAMEKLQSRFLEVMQEKVELKER 817
Cdd:TIGR02168 814 LLNEEAANLRERLESLERRIAATERRLEDLEEQIEEL-----SEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039762465 818 VEELEHCCIQLSGETDTIGEyialyqnQRAVLKARHLEKEEYISRLAQDKEEMKVKLLELQE 879
Cdd:TIGR02168 889 LALLRSELEELSEELRELES-------KRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
237-620 |
1.20e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 68.94 E-value: 1.20e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 237 QAARQKAGESEDLASRLQSsrqRVGELERTLSTVSTQQKQADRYNKDLTKERDalkLELYKNSKSNEDLRQQNSELEEKL 316
Cdd:TIGR02169 173 EKALEELEEVEENIERLDL---IIDEKRQQLERLRREREKAERYQALLKEKRE---YEGYELLKEKEALERQKEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 317 RVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQ--------HAMEERAQ-----LETHVSQLMESLKQ 383
Cdd:TIGR02169 247 ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRvkekigelEAEIASLErsiaeKERELEDAEERLAK 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 384 LQVERDQY---AENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPppeppagpsEAEEQL 460
Cdd:TIGR02169 327 LEAEIDKLlaeIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR---------EKLEKL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 461 QGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQnreL 540
Cdd:TIGR02169 398 KREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYD---L 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 541 KEQLAELQNgfvrltnenmEITSAlqseqhvKKELARKLGELQ---ERLGELKETVELKSQEAQGLQEQRDQCLSHLQQY 617
Cdd:TIGR02169 475 KEEYDRVEK----------ELSKL-------QRELAEAEAQARaseERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERY 537
|
...
gi 1039762465 618 AAA 620
Cdd:TIGR02169 538 ATA 540
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
116-677 |
1.22e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.81 E-value: 1.22e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 116 TESLRQLSQQLNGLVSESTSYINGEGLTSSNMKELENRYQELAVALDssyvtnkQLSSTIEELKQQNQDTLDQLEKEKKD 195
Cdd:COG1196 280 ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA-------ELEEELEELEEELEELEEELEEAEEE 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 196 YQQKLAKEQGSLREQLQvhiqtigiLVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQK 275
Cdd:COG1196 353 LEEAEAELAEAEEALLE--------AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 276 QADRYNKDLTKERDALKLELyknsksnedlrqqnSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAG 355
Cdd:COG1196 425 ELEEALAELEEEEEEEEEAL--------------EEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 356 GNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLA 435
Cdd:COG1196 491 ARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAK 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 436 ALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLshlnrEQEGRLLELEREAQRWSEQAEE 515
Cdd:COG1196 571 AGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLL-----GRTLVAARLEAALRRAVTLAGR 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 516 RKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVEL 595
Cdd:COG1196 646 LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEA 725
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 596 KSQEAQGLQEQRDQclsHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLqheevqGK--MAAElarQELQEA 673
Cdd:COG1196 726 LEEQLEAEREELLE---ELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL------GPvnLLAI---EEYEEL 793
|
....
gi 1039762465 674 QERL 677
Cdd:COG1196 794 EERY 797
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
143-474 |
9.37e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.23 E-value: 9.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 143 TSSNMKELENRYQELAVALDssyvtnkQLSSTIEELKQQNQDTLDQLEKEKKDYQQKlAKEQGSLREQLQVHIQTIGILV 222
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIA-------ELEKALAELRKELEELEEELEQLRKELEEL-SRQISALRKDLARLEAEVEQLE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 223 SEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSN 302
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 303 EDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSsqssaaggnEQLQHAMEERAQLETHVSQLMESLK 382
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELE---------SELEALLNERASLEEALALLRSELE 897
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 383 QLQVERDQYAENLKGEsamwQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAAlRSQMEEPPPPEPPAGPSEAEEQLQG 462
Cdd:TIGR02168 898 ELSEELRELESKRSEL----RRELEELREKLAQLELRLEGLEVRIDNLQERLSE-EYSLTLEEAEALENKIEDDEEEARR 972
|
330
....*....|..
gi 1039762465 463 EVEQLHKELERL 474
Cdd:TIGR02168 973 RLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
386-677 |
2.78e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 2.78e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 386 VERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAgpSEAEEQLQGEVE 465
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL--EAEVEQLEERIA 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 466 QLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQla 545
Cdd:TIGR02168 751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES-- 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 546 eLQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRdqclshlqqyaaayQQHL 625
Cdd:TIGR02168 829 -LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEAL--------------ALLR 893
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1039762465 626 AAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERL 677
Cdd:TIGR02168 894 SELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
167-522 |
1.00e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 1.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 167 TNKQLSSTIEELKQQnQDTLDQLEKEKKDY--QQKLAKEQGSLREQLQvHIQtIGILVSEKAELQTALAHTQQAARQKAG 244
Cdd:TIGR02168 177 TERKLERTRENLDRL-EDILNELERQLKSLerQAEKAERYKELKAELR-ELE-LALLVLRLEELREELEELQEELKEAEE 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 245 ESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKA 324
Cdd:TIGR02168 254 ELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLD 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 325 AAQLGVEELQKKLEmselllqqfssqssaaggneQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQ 404
Cdd:TIGR02168 334 ELAEELAELEEKLE--------------------ELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 405 RVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSE---AEEQLQGEVEQLHKELERLTGQLRAQ 481
Cdd:TIGR02168 394 QIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEEleeELEELQEELERLEEALEELREELEEA 473
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1039762465 482 VQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILES 522
Cdd:TIGR02168 474 EQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKN 514
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
245-594 |
2.13e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.61 E-value: 2.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 245 ESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKA 324
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 325 AAQLGVEELQKKLEMSELLLQQFSSQSSAAggNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYA---ENLKGESAM 401
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAEAEAEIEEL--EAQIEQLKEELKALREALDELRAELTLLNEEAANLRerlESLERRIAA 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 402 WQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEE-----PPPPEPPAGPSEAEEQLQGEVEQLHKELERLTG 476
Cdd:TIGR02168 836 TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAllnerASLEEALALLRSELEELSEELRELESKRSELRR 915
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 477 QLRAQvqdNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTisralsQNRELKEQLAELQNGFVRLTN 556
Cdd:TIGR02168 916 ELEEL---REKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIED------DEEEARRRLKRLENKIKELGP 986
|
330 340 350
....*....|....*....|....*....|....*...
gi 1039762465 557 ENMEITSALQSEQHVKKELARKLGELQERLGELKETVE 594
Cdd:TIGR02168 987 VNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIE 1024
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
149-678 |
9.46e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 59.75 E-value: 9.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 149 ELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILvsekAEL 228
Cdd:pfam15921 114 DLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVL----QEI 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 229 QTALAHTQQAARQKAGESEDLAS-RLQSSRQRVGELERTLSTvstqqkqadrynkdltkERDALKLELYKNSKSNEDLRq 307
Cdd:pfam15921 190 RSILVDFEEASGKKIYEHDSMSTmHFRSLGSAISKILRELDT-----------------EISYLKGRIFPVEDQLEALK- 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 308 qnSELEEKLRVLVAEKaaaQLGVEEL--QKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEeraQLETHVSQLMESLKQLQ 385
Cdd:pfam15921 252 --SESQNKIELLLQQH---QDRIEQLisEHEVEITGLTEKASSARSQANSIQSQLEIIQE---QARNQNSMYMRQLSDLE 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 386 VERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMeepppPEPPAGPSEAEEQLQGEVE 465
Cdd:pfam15921 324 STVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQL-----QKLLADLHKREKELSLEKE 398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 466 QLHKELERLTGqlraqvqDNESLSHLNREQEGRLLELER-EAQRWSEQAEERKQILESM---QSDRTTISRALSQNRELK 541
Cdd:pfam15921 399 QNKRLWDRDTG-------NSITIDHLRRELDDRNMEVQRlEALLKAMKSECQGQMERQMaaiQGKNESLEKVSSLTAQLE 471
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 542 EQLAELQNGFVRLTNENMEITSALQSEQHVK---KELARKLGELQERLGELKETVELKSQEAQGLQEQRDQcLSHLQQYA 618
Cdd:pfam15921 472 STKEMLRKVVEELTAKKMTLESSERTVSDLTaslQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDH-LRNVQTEC 550
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039762465 619 AAYQQHLAayeqltsEKEAIHKQLLLQTQLMDQL--QHEEVQGKMAAELARQELQEAQERLK 678
Cdd:pfam15921 551 EALKLQMA-------EKDKVIEILRQQIENMTQLvgQHGRTAGAMQVEKAQLEKEINDRRLE 605
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
303-653 |
1.06e-08 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 59.59 E-value: 1.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 303 EDLRQQNSELEEKLrvlvaekAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLK 382
Cdd:PRK04863 789 EQLRAEREELAERY-------ATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAELRQLNRRRVELERALADHESQEQ 861
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 383 QLQVERDQYAENLKGESAM-----------WQQRVQQMAEQVHTLKEEKEHRERQ---VQELETSLAALRSqmeeppppe 448
Cdd:PRK04863 862 QQRSQLEQAKEGLSALNRLlprlnlladetLADRVEEIREQLDEAEEAKRFVQQHgnaLAQLEPIVSVLQS--------- 932
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 449 ppagPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQrwseqaEERKQILESMQSDRt 528
Cdd:PRK04863 933 ----DPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLN------EKLRQRLEQAEQER- 1001
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 529 tisralsqnRELKEQLAELQNGFvrltNENMEITSALQSEQHVKKELarkLGELQERLGELkeTVELKSQEAQGLQEQRD 608
Cdd:PRK04863 1002 ---------TRAREQLRQAQAQL----AQYNQVLASLKSSYDAKRQM---LQELKQELQDL--GVPADSGAEERARARRD 1063
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1039762465 609 QClshlqqyaaaYQQHLAAYEQltseKEAIHKQLLLQTQLMDQLQ 653
Cdd:PRK04863 1064 EL----------HARLSANRSR----RNQLEKQLTFCEAEMDNLT 1094
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
207-486 |
1.10e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.30 E-value: 1.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 207 LREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTK 286
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 287 ERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKL-----EMSELLLQQFSSQSSAAGGNEQLQ 361
Cdd:TIGR02168 762 EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELtllneEAANLRERLESLERRIAATERRLE 841
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 362 HAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGesamWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQM 441
Cdd:TIGR02168 842 DLEEQIEELSEDIESLAAEIEELEELIEELESELEA----LLNERASLEEALALLRSELEELSEELRELESKRSELRREL 917
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1039762465 442 EEPPppeppagpsEAEEQLQGEVEQLHKELERLTGQLRAQVQDNE 486
Cdd:TIGR02168 918 EELR---------EKLAQLELRLEGLEVRIDNLQERLSEEYSLTL 953
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
175-683 |
5.01e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 57.23 E-value: 5.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 175 IEELKQQnQDTLDQLEKEKKDYQQKLAK--EQGSLREQLQVHIQTIgilvsEKAELQTALAHTQQAARQKAGESEDLASR 252
Cdd:COG4913 244 LEDAREQ-IELLEPIRELAERYAAARERlaELEYLRAALRLWFAQR-----RLELLEAELEELRAELARLEAELERLEAR 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 253 LQSSRQRVGELERTLSTVSTQQKQadrynkDLTKERDALKLELyknsksnEDLRQQNSELEEKLRVLVAEKAAAQLGVEE 332
Cdd:COG4913 318 LDALREELDELEAQIRGNGGDRLE------QLEREIERLEREL-------EERERRRARLEALLAALGLPLPASAEEFAA 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 333 LQKKL---------EMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLqveRDQYAENL-------- 395
Cdd:COG4913 385 LRAEAaallealeeELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLAL---RDALAEALgldeaelp 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 396 --------KGESAMWQ---------------------QRVQ------QMAEQVHTLKEEKEHRERQVQEL-ETSLAAlrs 439
Cdd:COG4913 462 fvgelievRPEEERWRgaiervlggfaltllvppehyAAALrwvnrlHLRGRLVYERVRTGLPDPERPRLdPDSLAG--- 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 440 qmeeppppEPPAGPSEAEEQLQGE------------VEQLHKELERLT--GQL-----RAQVQDNESLSHL------NRE 494
Cdd:COG4913 539 --------KLDFKPHPFRAWLEAElgrrfdyvcvdsPEELRRHPRAITraGQVkgngtRHEKDDRRRIRSRyvlgfdNRA 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 495 Q----EGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQN------RELKEQLAELQNGFVRLTNENMEItsa 564
Cdd:COG4913 611 KlaalEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSwdeidvASAEREIAELEAELERLDASSDDL--- 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 565 lqseqhvkKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQhlaayeqlTSEKEAIHKQLLL 644
Cdd:COG4913 688 --------AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEA--------AEDLARLELRALL 751
|
570 580 590
....*....|....*....|....*....|....*....
gi 1039762465 645 QTQLmDQLQHEEVQGKMAAELaRQELQEAQERLKATSQE 683
Cdd:COG4913 752 EERF-AAALGDAVERELRENL-EERIDALRARLNRAEEE 788
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
258-598 |
1.13e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 55.90 E-value: 1.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 258 QRVGELERTLSTVSTQQKQAD-RYNKDLTKERDALK--LELYKNSKSNEDlRQQNSELEEKLRVLVAEKAAAQLGVEELQ 334
Cdd:pfam17380 237 ERRKESFNLAEDVTTMTPEYTvRYNGQTMTENEFLNqlLHIVQHQKAVSE-RQQQEKFEKMEQERLRQEKEEKAREVERR 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 335 KKLEMSELLlQQFSSQSSAAGGNEQLQHAME-----ERAQLETHVSQlMESLKQ----LQVERDQYAENLKGESAMWQQR 405
Cdd:pfam17380 316 RKLEEAEKA-RQAEMDRQAAIYAEQERMAMErerelERIRQEERKRE-LERIRQeeiaMEISRMRELERLQMERQQKNER 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 406 VQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPppeppagpseaEEQLQGEVEQLHKELERLTGQLRAQVQDN 485
Cdd:pfam17380 394 VRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEAR-----------QREVRRLEEERAREMERVRLEEQERQQQV 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 486 ESLSHLNREQEGRLLELEREAQRWSEQAEERKQILE-SMQSDRTTISRALSQNRELKEQLAELQNGFV----RLTNENME 560
Cdd:pfam17380 463 ERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEkELEERKQAMIEEERKRKLLEKEMEERQKAIYeeerRREAEEER 542
|
330 340 350
....*....|....*....|....*....|....*...
gi 1039762465 561 ITSALQSEQHVKKELARKLGELQERLGELKETVELKSQ 598
Cdd:pfam17380 543 RKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQ 580
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
172-594 |
1.64e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.46 E-value: 1.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 172 SSTIEELKQQNQDTLDQLEKEKKDYQQKLAKEQGSLrEQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLAS 251
Cdd:PRK03918 188 TENIEELIKEKEKELEEVLREINEISSELPELREEL-EKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 252 RLQSSRQRVGELERTLSTVSTQQKQADRYNKdLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAaqlgVE 331
Cdd:PRK03918 267 RIEELKKEIEELEEKVKELKELKEKAEEYIK-LSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEER----LE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 332 ELQKKLEMSELLLQQFssqssaaggneqlqhamEERAQLETHVSQLMESLKQLQVERDQYA-ENLKGESAMWQQRVQQMA 410
Cdd:PRK03918 342 ELKKKLKELEKRLEEL-----------------EERHELYEEAKAKKEELERLKKRLTGLTpEKLEKELEELEKAKEEIE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 411 EQVHTLKEEKEHRERQVQELETSLAALRSqmeePPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSH 490
Cdd:PRK03918 405 EEISKITARIGELKKEIKELKKAIEELKK----AKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRK 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 491 LNREQEGRLLElEREAQRWSEQAEERKQILESMQS-DRTTISRALSQNRELKEQLAELQnGFVRLTNENMEITSALQSEq 569
Cdd:PRK03918 481 ELRELEKVLKK-ESELIKLKELAEQLKELEEKLKKyNLEELEKKAEEYEKLKEKLIKLK-GEIKSLKKELEKLEELKKK- 557
|
410 420
....*....|....*....|....*
gi 1039762465 570 hvKKELARKLGELQERLGELKETVE 594
Cdd:PRK03918 558 --LAELEKKLDELEEELAELLKELE 580
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
455-822 |
1.65e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 55.73 E-value: 1.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 455 EAEEQLQGEVEQLH----------KELERLTGQLRAQVQDNESLS-HLNREQEG---------RLLELEREAQRWSEQAE 514
Cdd:COG3096 289 ELRRELFGARRQLAeeqyrlvemaRELEELSARESDLEQDYQAASdHLNLVQTAlrqqekierYQEDLEELTERLEEQEE 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 515 ERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFvrltneNMEITSALQSEQHVK-KELARKLGELQERLGE-LKET 592
Cdd:COG3096 369 VVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQAL------DVQQTRAIQYQQAVQaLEKARALCGLPDLTPEnAEDY 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 593 VELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTS-----EKEAIHKQlllQTQLMDQLQHEEVQGKMAAELaR 667
Cdd:COG3096 443 LAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKiagevERSQAWQT---ARELLRRYRSQQALAQRLQQL-R 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 668 QELQEAQERLKatSQENQQLQAQLSLLVLPGEGdvdqeeedeevpQSSLAIPEDLDSREAMVAFFNAAIARAEEEQARLR 747
Cdd:COG3096 519 AQLAELEQRLR--QQQNAERLLEEFCQRIGQQL------------DAAEELEELLAELEAQLEELEEQAAEAVEQRSELR 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 748 VQLKEQKARCRSLSHLAaPV----QSKLEK--EAVvprnvddSASEESNQALHVAMEKLQSRFLEVMQEKVELKERVEEL 821
Cdd:COG3096 585 QQLEQLRARIKELAARA-PAwlaaQDALERlrEQS-------GEALADSQEVTAAMQQLLEREREATVERDELAARKQAL 656
|
.
gi 1039762465 822 E 822
Cdd:COG3096 657 E 657
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
144-439 |
2.73e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 2.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 144 SSNMKELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDYqQKLAKEQGSLREQLQVHIQTIGILVS 223
Cdd:TIGR02168 753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL-DELRAELTLLNEEAANLRERLESLER 831
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 224 EKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRynkdltkERDALKLELYKNSKSNE 303
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEE-------ALALLRSELEELSEELR 904
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 304 DLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMselLLQQFSSQssaagGNEQLQHAMEERAQLETHVSQLMESLKQ 383
Cdd:TIGR02168 905 ELESKRSELRRELEELREKLAQLELRLEGLEVRIDN---LQERLSEE-----YSLTLEEAEALENKIEDDEEEARRRLKR 976
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1039762465 384 LQVERDQYAE-NLkgeSAMwqqrvqqmaEQVHTLKEEKEHRERQVQELETSLAALRS 439
Cdd:TIGR02168 977 LENKIKELGPvNL---AAI---------EEYEELKERYDFLTAQKEDLTEAKETLEE 1021
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
117-594 |
3.20e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.66 E-value: 3.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 117 ESLRQLSQQLNGLVSESTSYINGEGLTSSNMK-------ELENRYQELAVALDSSYVTNKQLSSTIEELKQqNQDTLDQL 189
Cdd:PRK02224 279 EEVRDLRERLEELEEERDDLLAEAGLDDADAEavearreELEDRDEELRDRLEECRVAAQAHNEEAESLRE-DADDLEER 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 190 EKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLST 269
Cdd:PRK02224 358 AEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRT 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 270 VSTQQKQADRYnkdltkeRDALK-------LELYKNSKSNEDLRQQNSELEeklrvlvAEKAAAQLGVEELQKKLEMSEL 342
Cdd:PRK02224 438 ARERVEEAEAL-------LEAGKcpecgqpVEGSPHVETIEEDRERVEELE-------AELEDLEEEVEEVEERLERAED 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 343 LlqqfssqSSAAGGNEQLQHAMEERAQL-ETHVSQLMESLKQLQVERDQyAENLKGESAMWQQRVQQMAEQVHTLKEEKE 421
Cdd:PRK02224 504 L-------VEAEDRIERLEERREDLEELiAERRETIEEKRERAEELRER-AAELEAEAEEKREAAAEAEEEAEEAREEVA 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 422 HRERQVQELETSLAALrsqmeeppppeppagpsEAEEQLQGEVEQLHKELERLTGQLraqvqdnESLSHLNREQEGRLLE 501
Cdd:PRK02224 576 ELNSKLAELKERIESL-----------------ERIRTLLAAIADAEDEIERLREKR-------EALAELNDERRERLAE 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 502 L-EREAQRWSEQAEERkqiLESMQSDRTTISRALSQN----RELKEQLAELQNgfvrltnenmEITSalqseqhVKKELA 576
Cdd:PRK02224 632 KrERKRELEAEFDEAR---IEEAREDKERAEEYLEQVeeklDELREERDDLQA----------EIGA-------VENELE 691
|
490
....*....|....*...
gi 1039762465 577 RkLGELQERLGELKETVE 594
Cdd:PRK02224 692 E-LEELRERREALENRVE 708
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
260-682 |
4.57e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.00 E-value: 4.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 260 VGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEM 339
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 340 SELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEE 419
Cdd:COG4717 128 LPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQR 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 420 KEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAEEQ-------------LQGEVEQLHKELERLTGQLRA------ 480
Cdd:COG4717 208 LAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEarlllliaaallaLLGLGGSLLSLILTIAGVLFLvlglla 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 481 ---QVQDNESLSHLNREQEGRLLELER--EAQRWSEQAEER-----------KQILESMQSDRTTISRALSQNRELK--E 542
Cdd:COG4717 288 llfLLLAREKASLGKEAEELQALPALEelEEEELEELLAALglppdlspeelLELLDRIEELQELLREAEELEEELQleE 367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 543 QLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVE--LKSQEAQGLQEQRDQCLSHLQQYAAA 620
Cdd:COG4717 368 LEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEelLEALDEEELEEELEELEEELEELEEE 447
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039762465 621 YQQHLAAYEQLTSEKEAIHK-----QLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQ 682
Cdd:COG4717 448 LEELREELAELEAELEQLEEdgelaELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERL 514
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
282-683 |
1.06e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.46 E-value: 1.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 282 KDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQ 361
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 362 HAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQM 441
Cdd:COG4717 129 PLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRL 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 442 EEPPppeppagpsEAEEQLQGEVEQLHKELERLTGQLRAQvQDNESLSHLNREQ--EGRLLELEREAQRWSEQAEERKQI 519
Cdd:COG4717 209 AELE---------EELEEAQEELEELEEELEQLENELEAA-ALEERLKEARLLLliAAALLALLGLGGSLLSLILTIAGV 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 520 LESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKEL-----------ARKLGELQERLGE 588
Cdd:COG4717 279 LFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLspeellelldrIEELQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 589 LKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHlAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELA-- 666
Cdd:COG4717 359 LEEELQLEELEQEIAALLAEAGVEDEEELRAALEQA-EEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEel 437
|
410
....*....|....*..
gi 1039762465 667 RQELQEAQERLKATSQE 683
Cdd:COG4717 438 EEELEELEEELEELREE 454
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
173-890 |
1.22e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 1.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 173 STIEELKQQNQDTLDQLEKEKKDYQQKL---AKEQGSLREQLQVHIQTigilvsEKAELQTALAHTQQAARQKAGESEDL 249
Cdd:TIGR02169 247 ASLEEELEKLTEEISELEKRLEEIEQLLeelNKKIKDLGEEEQLRVKE------KIGELEAEIASLERSIAEKERELEDA 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 250 ASRLQSSRQRVGELERTLSTVSTQQKQadrynkdLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLG 329
Cdd:TIGR02169 321 EERLAKLEAEIDKLLAEIEELEREIEE-------ERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREK 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 330 VEELQKKLEmselllqqfSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGEsamwQQRVQQM 409
Cdd:TIGR02169 394 LEKLKREIN---------ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQ----EWKLEQL 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 410 AEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSE-----AEEQLQ-------GEVEQLHKELER---- 473
Cdd:TIGR02169 461 AADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVrggraVEEVLKasiqgvhGTVAQLGSVGERyata 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 474 ----LTGQLRAQVQDNES-----LSHLNREQEGR------------------------------LLELEREAQRWSEQAE 514
Cdd:TIGR02169 541 ievaAGNRLNNVVVEDDAvakeaIELLKRRKAGRatflplnkmrderrdlsilsedgvigfavdLVEFDPKYEPAFKYVF 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 515 ERKQILESMQSDR--TTISRALSQNRELKEQLAELQNGFVrltnenmeitsALQSEQHVKKELARKLGELQERLGELKET 592
Cdd:TIGR02169 621 GDTLVVEDIEAARrlMGKYRMVTLEGELFEKSGAMTGGSR-----------APRGGILFSRSEPAELQRLRERLEGLKRE 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 593 VELKSQEAQGLQEQRDQCLSHLQqyaAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQH--------EEVQGKMAAE 664
Cdd:TIGR02169 690 LSSLQSELRRIENRLDELSQELS---DASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSleqeienvKSELKELEAR 766
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 665 LARQELQEAQERLKATSQENQQLQAQLSLLVLPGEGDVDQEEEDEEVPQSslaIPEDLDSREAMVAFFNAAIARAEEEQA 744
Cdd:TIGR02169 767 IEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLRE---IEQKLNRLTLEKEYLEKEIQELQEQRI 843
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 745 RLRVQLKEQKARCRSLSHLAAPVQSKLEKEAVVPRNVDDSASEESNQALHV--AMEKLQSRFLEVMQEKVELKERVEELE 822
Cdd:TIGR02169 844 DLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELeaQLRELERKIEELEAQIEKKRKRLSELK 923
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 823 HCCIQLSGETDTIGEYIALYQNQRA------VLKARHLEKEEYISRLA-------QDKEEMKVKLLELQELVLRLVNERN 889
Cdd:TIGR02169 924 AKLEALEEELSEIEDPKGEDEEIPEeelsleDVQAELQRVEEEIRALEpvnmlaiQEYEEVLKRLDELKEKRAKLEEERK 1003
|
.
gi 1039762465 890 E 890
Cdd:TIGR02169 1004 A 1004
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
175-684 |
1.24e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.73 E-value: 1.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 175 IEELKQQNQDTLDQLEKekkdyqQKLAKEQGSLREQLQVhiqtigiLVSEKAELQTALAHTQQAARQKAGESEDLASRLQ 254
Cdd:PRK02224 178 VERVLSDQRGSLDQLKA------QIEEKEEKDLHERLNG-------LESELAELDEEIERYEEQREQARETRDEADEVLE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 255 SSRQRVGELERTLSTV--STQQKQADRynkdltKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEE 332
Cdd:PRK02224 245 EHEERREELETLEAEIedLRETIAETE------REREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 333 LQKKLEmselllqqfssqssaaggnEQLQHAMEERAQLETHVSQlmeslkqlqverdqyAENLKGESAMWQQRVQQMAEQ 412
Cdd:PRK02224 319 LEDRDE-------------------ELRDRLEECRVAAQAHNEE---------------AESLREDADDLEERAEELREE 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 413 VHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGpsEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLShlN 492
Cdd:PRK02224 365 AAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAP--VDLGNAEDFLEELREERDELREREAELEATLRTAR--E 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 493 REQEGRLLeleREAQRWSE--QAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLtnenmeiTSALQSEQH 570
Cdd:PRK02224 441 RVEEAEAL---LEAGKCPEcgQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERA-------EDLVEAEDR 510
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 571 VKKeLARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQ-QYAAAYQQHLAAYEQLtSEKEAIHKQLLLQTQLM 649
Cdd:PRK02224 511 IER-LEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEeKREAAAEAEEEAEEAR-EEVAELNSKLAELKERI 588
|
490 500 510
....*....|....*....|....*....|....*
gi 1039762465 650 DQLQHEEVQGKMAAElARQELQEAQERLKATSQEN 684
Cdd:PRK02224 589 ESLERIRTLLAAIAD-AEDEIERLREKREALAELN 622
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
148-678 |
1.42e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.61 E-value: 1.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 148 KELENRYQELAVALDSsyvTNKQLSSTIEELKQQNQDTLDQLEKEKKDYQQKLAkEQGSLREQLQVHIQTIGI-LVSEKA 226
Cdd:COG4913 305 ARLEAELERLEARLDA---LREELDELEAQIRGNGGDRLEQLEREIERLERELE-ERERRRARLEALLAALGLpLPASAE 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 227 ELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQ----QKQADRYNKDLTKERDALKLELyknSKSN 302
Cdd:COG4913 381 EFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEiaslERRKSNIPARLLALRDALAEAL---GLDE 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 303 EDLR------QQNSELEE------------KLRVLVAEKAAAQ----------------LGVEELQKKLEMSEL----LL 344
Cdd:COG4913 458 AELPfvgeliEVRPEEERwrgaiervlggfALTLLVPPEHYAAalrwvnrlhlrgrlvyERVRTGLPDPERPRLdpdsLA 537
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 345 QQFSSQSSAAGG--NEQLQHAM-----EERAQLETHVSQLME--------SLKQLQVERDQYAENLKGESAmwQQRVQQM 409
Cdd:COG4913 538 GKLDFKPHPFRAwlEAELGRRFdyvcvDSPEELRRHPRAITRagqvkgngTRHEKDDRRRIRSRYVLGFDN--RAKLAAL 615
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 410 AEQVHTLKEEKEHRERQVQELETSLAALRSQmeePPPPEPPAGPSEAEEqlqgEVEQLHKELERLTGQLRAQVQDNESLS 489
Cdd:COG4913 616 EAELAELEEELAEAEERLEALEAELDALQER---REALQRLAEYSWDEI----DVASAEREIAELEAELERLDASSDDLA 688
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 490 HLNREQEgrllELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENM-EITSALQSE 568
Cdd:COG4913 689 ALEEQLE----ELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERfAAALGDAVE 764
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 569 QHVKKELARKLGELQERLGELKETVELKSQEAqglQEQRDQCLSHLQQYAAAYQQHLAAYEQLTS----EKEAIHKQLLL 644
Cdd:COG4913 765 RELRENLEERIDALRARLNRAEEELERAMRAF---NREWPAETADLDADLESLPEYLALLDRLEEdglpEYEERFKELLN 841
|
570 580 590
....*....|....*....|....*....|....*.
gi 1039762465 645 Q--TQLMDQLQHEevqgkmaaelARQELQEAQERLK 678
Cdd:COG4913 842 EnsIEFVADLLSK----------LRRAIREIKERID 867
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
190-684 |
1.92e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.07 E-value: 1.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 190 EKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTlst 269
Cdd:PTZ00121 1234 EAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKK--- 1310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 270 vSTQQKQADRYNK---DLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQ 346
Cdd:PTZ00121 1311 -AEEAKKADEAKKkaeEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEE 1389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 347 FSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQ 426
Cdd:PTZ00121 1390 KKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEA 1469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 427 VQELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGE-----VEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLE 501
Cdd:PTZ00121 1470 KKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAeakkkADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD 1549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 502 LEREAQRwSEQAEERKQILESM--QSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKL 579
Cdd:PTZ00121 1550 ELKKAEE-LKKAEEKKKAEEAKkaEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA 1628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 580 GELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQlllqtqlMDQLQHEEVQG 659
Cdd:PTZ00121 1629 EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKA-------AEALKKEAEEA 1701
|
490 500
....*....|....*....|....*..
gi 1039762465 660 KMAAELARQELQEAQ--ERLKATSQEN 684
Cdd:PTZ00121 1702 KKAEELKKKEAEEKKkaEELKKAEEEN 1728
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
282-547 |
2.11e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.84 E-value: 2.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 282 KDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVL--VAEKAAAQLGVEELQKKL-----EMSELL-----LQQFSS 349
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALqrLAEYSWDEIDVASAEREIaeleaELERLDassddLAALEE 692
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 350 QSSAAggNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQE 429
Cdd:COG4913 693 QLEEL--EAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELREN 770
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 430 LETSLAALRSQMeeppppeppagpSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNES-LSHLNREQEGRLLELEreaQR 508
Cdd:COG4913 771 LEERIDALRARL------------NRAEEELERAMRAFNREWPAETADLDADLESLPEyLALLDRLEEDGLPEYE---ER 835
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1039762465 509 WseqaeeRKQILESMQSDRTTISRALSQNREL-KEQLAEL 547
Cdd:COG4913 836 F------KELLNENSIEFVADLLSKLRRAIREiKERIDPL 869
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
170-846 |
5.57e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 5.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 170 QLSSTIEELKQQnQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDL 249
Cdd:TIGR02169 291 RVKEKIGELEAE-IASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDL 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 250 ASRLQssrqrvgELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLG 329
Cdd:TIGR02169 370 RAELE-------EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEE 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 330 VEELQKKLEMSELLLQQFSSQSSAAggNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMwQQRVQQM 409
Cdd:TIGR02169 443 KEDKALEIKKQEWKLEQLAADLSKY--EQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAV-EEVLKAS 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 410 AEQVH-TLKEEKEHRERQVQELETSLAA-------------------LRS---------------QMEEPPPPEPPAGPS 454
Cdd:TIGR02169 520 IQGVHgTVAQLGSVGERYATAIEVAAGNrlnnvvveddavakeaielLKRrkagratflplnkmrDERRDLSILSEDGVI 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 455 -------EAEEQLQGEVEQ------LHKELE---RLTGQLRAQVQDNESL---------SHLNREQEGRLLELEREAQRW 509
Cdd:TIGR02169 600 gfavdlvEFDPKYEPAFKYvfgdtlVVEDIEaarRLMGKYRMVTLEGELFeksgamtggSRAPRGGILFSRSEPAELQRL 679
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 510 SEQAEERKQILESMQSDRTTISRALSqnrELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGEL 589
Cdd:TIGR02169 680 RERLEGLKRELSSLQSELRRIENRLD---ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENV 756
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 590 KETVELKSQEAQGLQEQrdqcLSHLQQYAAAYQQHLAAY-----EQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAE 664
Cdd:TIGR02169 757 KSELKELEARIEELEED----LHKLEEALNDLEARLSHSripeiQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE 832
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 665 LARQELQEAQERLKATSQENQQLQAQLSLLVLPGEGDVDQEEEDEEVPQSSLA-IPEDLDSREAMVAFFNAAIARAEEEQ 743
Cdd:TIGR02169 833 KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGdLKKERDELEAQLRELERKIEELEAQI 912
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 744 ARLRVQLKEQKARCRSL-SHLAAPVQSKLEKEAVVPRNVDDSASEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELE 822
Cdd:TIGR02169 913 EKKRKRLSELKAKLEALeEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELK 992
|
730 740
....*....|....*....|....
gi 1039762465 823 HCCIQLSGETDTIGEYIALYQNQR 846
Cdd:TIGR02169 993 EKRAKLEEERKAILERIEEYEKKK 1016
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
225-686 |
5.60e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 50.68 E-value: 5.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 225 KAELQTALahtQQAARQKAGESEDLASrlqssrqrVGELERTLSTVstqqKQADRYNKDLtkerDALKLELyknSKSNED 304
Cdd:PRK11281 38 EADVQAQL---DALNKQKLLEAEDKLV--------QQDLEQTLALL----DKIDRQKEET----EQLKQQL---AQAPAK 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 305 LRQQNSELE--EKLRVLVAEKAAAQLGVEELQKKLEmsELLLQQFSSQSSAAGGNEQL--QHAMEERAQlethvSQLMES 380
Cdd:PRK11281 96 LRQAQAELEalKDDNDEETRETLSTLSLRQLESRLA--QTLDQLQNAQNDLAEYNSQLvsLQTQPERAQ-----AALYAN 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 381 lkqlqverdqyaenlkgesamwQQRVQQMAEQVHTLKEEKEH-RERQVQELETSLAALRSQMEEPPPPEppagpsEAEEQ 459
Cdd:PRK11281 169 ----------------------SQRLQQIRNLLKGGKVGGKAlRPSQRVLLQAEQALLNAQNDLQRKSL------EGNTQ 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 460 LQGEVEQLHKELERLTGQLRAQVQDNESLshLNREqegRLLELEREAQrwseQAEERKQILESMQSDrtTISRALSQNRE 539
Cdd:PRK11281 221 LQDLLQKQRDYLTARIQRLEHQLQLLQEA--INSK---RLTLSEKTVQ----EAQSQDEAARIQANP--LVAQELEINLQ 289
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 540 LKEQLAELQNGFVRLTNENMEIT----SALQSEQHVKKE---------LARKLGELQERLGELKETVELKSQEAQ----- 601
Cdd:PRK11281 290 LSQRLLKATEKLNTLTQQNLRVKnwldRLTQSERNIKEQisvlkgsllLSRILYQQQQALPSADLIEGLADRIADlrleq 369
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 602 -GLQEQRDQcLSHLQQYAAAyqqhlaayeqltsekeaihkqlLLQTQlmdqlqheevQGKMAAELARQELQEAQERLKAT 680
Cdd:PRK11281 370 fEINQQRDA-LFQPDAYIDK----------------------LEAGH----------KSEVTDEVRDALLQLLDERRELL 416
|
....*.
gi 1039762465 681 SQENQQ 686
Cdd:PRK11281 417 DQLNKQ 422
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
208-598 |
6.23e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 50.34 E-value: 6.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 208 REQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVST---QQKQADRYNKDL 284
Cdd:PRK04863 278 ANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTalrQQEKIERYQADL 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 285 tkerDALKLELYKNSKSNEDLRQQNSELEEKLRvlvaekaAAQLGVEELQKKLEMSElllQQFSSQSSAAGGNEQLQHAM 364
Cdd:PRK04863 358 ----EELEERLEEQNEVVEEADEQQEENEARAE-------AAEEEVDELKSQLADYQ---QALDVQQTRAIQYQQAVQAL 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 365 EERAQL----ETHVSQLMESLKQLQVERDQYAENLKG------ESAMWQQRVQQMAEQVHTLKEEKEHRE--RQVQELET 432
Cdd:PRK04863 424 ERAKQLcglpDLTADNAEDWLEEFQAKEQEATEELLSleqklsVAQAAHSQFEQAYQLVRKIAGEVSRSEawDVARELLR 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 433 SLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLhkeLERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQ 512
Cdd:PRK04863 504 RLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERL---LAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARER 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 513 AEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKET 592
Cdd:PRK04863 581 RMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEE 660
|
....*.
gi 1039762465 593 VELKSQ 598
Cdd:PRK04863 661 IERLSQ 666
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
311-582 |
6.45e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 50.34 E-value: 6.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 311 ELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQ 390
Cdd:COG3096 789 ELRAERDELAEQYAKASFDVQKLQRLHQAFSQFVGGHLAVAFAPDPEAELAALRQRRSELERELAQHRAQEQQLRQQLDQ 868
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 391 YAENLKGESAM-----------WQQRVQQMAEQVHTLKEEKEHRERQ---VQELETSLAALRSqmeeppppeppagPSEA 456
Cdd:COG3096 869 LKEQLQLLNKLlpqanlladetLADRLEELREELDAAQEAQAFIQQHgkaLAQLEPLVAVLQS-------------DPEQ 935
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 457 EEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLElerEAQRWSEQAEERkqiLESMQSDRttisralsq 536
Cdd:COG3096 936 FEQLQADYLQAKEQQRRLKQQIFALSEVVQRRPHFSYEDAVGLLG---ENSDLNEKLRAR---LEQAEEAR--------- 1000
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1039762465 537 nRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGEL 582
Cdd:COG3096 1001 -REAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEEL 1045
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
249-473 |
7.73e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 7.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 249 LASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQL 328
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 329 GVEELQKKLE-----MSELL--LQQFSSQSS-----AAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLK 396
Cdd:COG4942 91 EIAELRAELEaqkeeLAELLraLYRLGRQPPlalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039762465 397 GESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPppeppagpsEAEEQLQGEVEQLHKELER 473
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ---------QEAEELEALIARLEAEAAA 238
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
176-529 |
8.26e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 8.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 176 EELKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQlqvhiqtigilvSEKAELQTALAHTQQAARQKAGESEDLASRLQS 255
Cdd:PTZ00121 1434 DEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEE------------AKKADEAKKKAEEAKKADEAKKKAEEAKKKADE 1501
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 256 SRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLR--QQNSELEEKLRVLVAEKA----AAQLG 329
Cdd:PTZ00121 1502 AKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKkaEELKKAEEKKKAEEAKKAeedkNMALR 1581
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 330 VEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLET-----HVSQLMESLKQLQVERDQYAENLKGESAMWQQ 404
Cdd:PTZ00121 1582 KAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEElkkaeEEKKKVEQLKKKEAEEKKKAEELKKAEEENKI 1661
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 405 RVQQM----------AEQVHTLKEEKEHRERQV-QELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELE- 472
Cdd:PTZ00121 1662 KAAEEakkaeedkkkAEEAKKAEEDEKKAAEALkKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEe 1741
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1039762465 473 --RLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTT 529
Cdd:PTZ00121 1742 dkKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKI 1800
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
147-510 |
8.44e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.77 E-value: 8.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 147 MKELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQdtldQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKA 226
Cdd:COG4717 134 LEALEAELAELPERLEELEERLEELRELEEELEELEA----ELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLA 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 227 ELQTALAHTQQAARQKAGESEDLASRLQSS--RQRVGELERTL---STVSTQQKQADRYNKDLTKERDALKLEL------ 295
Cdd:COG4717 210 ELEEELEEAQEELEELEEELEQLENELEAAalEERLKEARLLLliaAALLALLGLGGSLLSLILTIAGVLFLVLgllall 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 296 -YKNSKSNEDLRQQnselEEKLRVLVAEKAAAQLGVEELQKKLEMSELLlqqfsSQSSAAGGNEQLQHAMEERAQLETHV 374
Cdd:COG4717 290 fLLLAREKASLGKE----AEELQALPALEELEEEELEELLAALGLPPDL-----SPEELLELLDRIEELQELLREAEELE 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 375 SQLmeSLKQLQVERDQYAENLKGES-AMWQQRVQQmAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGP 453
Cdd:COG4717 361 EEL--QLEELEQEIAALLAEAGVEDeEELRAALEQ-AEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEEL 437
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 1039762465 454 SEAEEQLQGEVEQLHKELERLTGQLRaQVQDNESLSHLNREQEGRLLELEREAQRWS 510
Cdd:COG4717 438 EEELEELEEELEELREELAELEAELE-QLEEDGELAELLQELEELKAELRELAEEWA 493
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
143-547 |
1.22e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.38 E-value: 1.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 143 TSSNMKELENRYQELAVALDS-----SYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDYQQKLAKEQgSLREQLQvhiqt 217
Cdd:COG4717 100 LEEELEELEAELEELREELEKlekllQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELE-ELEAELA----- 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 218 igilvSEKAELQTALAHTQQAARQkagESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRynkdltkerdalKLELYK 297
Cdd:COG4717 174 -----ELQEELEELLEQLSLATEE---ELQDLAEELEELQQRLAELEEELEEAQEELEELEE------------ELEQLE 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 298 NSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELL--------LQQFSSQSSAAGGNEQLQHAMEERAQ 369
Cdd:COG4717 234 NELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLflvlgllaLLFLLLAREKASLGKEAEELQALPAL 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 370 LETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEqvhtlkEEKEHRERQVQELETSLAAL--RSQMEEPPPP 447
Cdd:COG4717 314 EELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLRE------AEELEEELQLEELEQEIAALlaEAGVEDEEEL 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 448 EPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQ--DNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQS 525
Cdd:COG4717 388 RAALEQAEEYQELKEELEELEEQLEELLGELEELLEalDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEE 467
|
410 420
....*....|....*....|..
gi 1039762465 526 DRtTISRALSQNRELKEQLAEL 547
Cdd:COG4717 468 DG-ELAELLQELEELKAELREL 488
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
454-681 |
1.24e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 1.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 454 SEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRA 533
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 534 LSQNRE-LKEQLAELQ-NGFVRLTNENMEITSALQSE------QHVKKELARKLGELQERLGELKETVELKSQEAQGLQE 605
Cdd:COG4942 99 LEAQKEeLAELLRALYrLGRQPPLALLLSPEDFLDAVrrlqylKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039762465 606 QRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLllqtqlmDQLQHEEVQGKMAAELARQELQEAQERLKATS 681
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAEL-------AELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
224-677 |
1.74e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 49.18 E-value: 1.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 224 EKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTvsTQQKQADRYNKDLTKERDALKLELYKnsksnE 303
Cdd:COG3096 282 ELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQ--DYQAASDHLNLVQTALRQQEKIERYQ-----E 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 304 DLrqqnSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELllqqfsSQSSAAGGNEQLQHAMEE---RAQLETHVSQLMES 380
Cdd:COG3096 355 DL----EELTERLEEQEEVVEEAAEQLAEAEARLEAAEE------EVDSLKSQLADYQQALDVqqtRAIQYQQAVQALEK 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 381 LKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSqmeeppppepPAGPSEAEEQL 460
Cdd:COG3096 425 ARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCK----------IAGEVERSQAW 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 461 QGEVEQLhkeleRLTGQLRAQVQDNESLshlnreqEGRLLELEREaqrwseqaeerkqilesmqsdrttisraLSQNREL 540
Cdd:COG3096 495 QTARELL-----RRYRSQQALAQRLQQL-------RAQLAELEQR----------------------------LRQQQNA 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 541 KEQLAELQNGFvrltneNMEITSALqseqhvkkELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAA 620
Cdd:COG3096 535 ERLLEEFCQRI------GQQLDAAE--------ELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAAR 600
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 1039762465 621 YQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHeEVQGKMAAELARQELQEAQERL 677
Cdd:COG3096 601 APAWLAAQDALERLREQSGEALADSQEVTAAMQQ-LLEREREATVERDELAARKQAL 656
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
103-669 |
1.95e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.81 E-value: 1.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 103 CSNLMEETKTFSSTESLRQLSQQLNGLVSESTSYINGEGLTSSNMKELENRYQELAVALDSSYVTNKQLSSTIEELKQQN 182
Cdd:TIGR00618 269 IEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQ 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 183 QDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGE 262
Cdd:TIGR00618 349 TLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAH 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 263 LERTLS---TVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEM 339
Cdd:TIGR00618 429 AKKQQElqqRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCG 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 340 SELLLQQFSSQSSAAGGNEQLQHAMEERAQ-----LETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVH 414
Cdd:TIGR00618 509 SCIHPNPARQDIDNPGPLTRRMQRGEQTYAqletsEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPN 588
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 415 TLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNRE 494
Cdd:TIGR00618 589 LQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIR 668
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 495 QEGRLLELEREAQRWSEQAEERkqileSMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKE 574
Cdd:TIGR00618 669 VLPKELLASRQLALQKMQSEKE-----QLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQ 743
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 575 LARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQH 654
Cdd:TIGR00618 744 SLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQC 823
|
570
....*....|....*
gi 1039762465 655 EEVQGKMAAELARQE 669
Cdd:TIGR00618 824 ETLVQEEEQFLSRLE 838
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
226-473 |
2.29e-05 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 48.10 E-value: 2.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 226 AELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGElertlSTVSTQQKQADRYNK-DLTKERDALKLELYKNSKSNED 304
Cdd:pfam05667 254 EQLRSAALAGTEATSGASRSAQDLAELLSSFSGSSTT-----DTGLTKGSRFTHTEKlQFTNEAPAATSSPPTKVETEEE 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 305 LRQQN----SELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQssaaggNEQLQHAMEERAQLETHVSQLMES 380
Cdd:pfam05667 329 LQQQReeelEELQEQLEDLESSIQELEKEIKKLESSIKQVEEELEELKEQ------NEELEKQYKVKKKTLDLLPDAEEN 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 381 LKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGpsEAEEQL 460
Cdd:pfam05667 403 IAKLQALVDASAQRLVELAGQWEKHRVPLIEEYRALKEAKSNKEDESQRKLEEIKELREKIKEVAEEAKQKE--ELYKQL 480
|
250
....*....|...
gi 1039762465 461 QGEVEQLHKELER 473
Cdd:pfam05667 481 VAEYERLPKDVSR 493
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
245-440 |
2.72e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.37 E-value: 2.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 245 ESEDLASRLQSSRQRVGELERTLSTVSTQQKQ-------ADRYNKDLTK----ERDALKLELYKNSKSNEDLRQQNSELE 313
Cdd:COG4913 222 DTFEAADALVEHFDDLERAHEALEDAREQIELlepirelAERYAAARERlaelEYLRAALRLWFAQRRLELLEAELEELR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 314 EKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQfssqssaAGGN------EQLQHAMEERAQLETHVSQLMESLKQLQVE 387
Cdd:COG4913 302 AELARLEAELERLEARLDALREELDELEAQIRG-------NGGDrleqleREIERLERELEERERRRARLEALLAALGLP 374
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1039762465 388 rdqyaenLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQ 440
Cdd:COG4913 375 -------LPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRE 420
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
169-609 |
2.72e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.18 E-value: 2.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 169 KQLSSTIEELKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQL------QVHIQTIGILVSEKAELQTALAHTQQAARQK 242
Cdd:pfam05483 355 EATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTkfknnkEVELEELKKILAEDEKLLDEKKQFEKIAEEL 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 243 AGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAE 322
Cdd:pfam05483 435 KGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLE 514
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 323 KAAAQlgvEELQKKLEMSELLLQQFSSQSsaaggneqlQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMW 402
Cdd:pfam05483 515 LKKHQ---EDIINCKKQEERMLKQIENLE---------EKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEV 582
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 403 QQRVQQMA---EQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAgpSEAEEQLQGEVEQLHKELERLTGQLR 479
Cdd:pfam05483 583 LKKEKQMKileNKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAY--EIKVNKLELELASAKQKFEEIIDNYQ 660
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 480 AQVQDNESlshlnrEQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNenm 559
Cdd:pfam05483 661 KEIEDKKI------SEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYK--- 731
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 1039762465 560 eitSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQ 609
Cdd:pfam05483 732 ---NKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKE 778
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
175-648 |
2.88e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.04 E-value: 2.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 175 IEELKQQNQDTLDQLEKEKKDYQQKLAKEQgsLREQLQVHIQTIGILVSEKAELQTALAHTQQAAR---------QKAGE 245
Cdd:TIGR00618 231 LREALQQTQQSHAYLTQKREAQEEQLKKQQ--LLKQLRARIEELRAQEAVLEETQERINRARKAAPlaahikavtQIEQQ 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 246 SEDLASRLQSS-RQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKN-SKSNEDLRQQNSELEEKLRVLVAEK 323
Cdd:TIGR00618 309 AQRIHTELQSKmRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEvATSIREISCQQHTLTQHIHTLQQQK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 324 AAAQLGVEELQKKLEMSELLLQQFSSQSSA--------AGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENL 395
Cdd:TIGR00618 389 TTLTQKLQSLCKELDILQREQATIDTRTSAfrdlqgqlAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSL 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 396 KGESAMWQQrVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAE-EQLQGEVEQLHKELERL 474
Cdd:TIGR00618 469 KEREQQLQT-KEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRmQRGEQTYAQLETSEEDV 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 475 TGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQsdrttisRALSQNRELKEQLAELQNGFVRL 554
Cdd:TIGR00618 548 YHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQ-------DLTEKLSEAEDMLACEQHALLRK 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 555 TNENMEITSALQSEQHVKKELARKLGELQERLGELketveLKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSE 634
Cdd:TIGR00618 621 LQPEQDLQDVRLHLQQCSQELALKLTALHALQLTL-----TQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYW 695
|
490
....*....|....*
gi 1039762465 635 KEAI-HKQLLLQTQL 648
Cdd:TIGR00618 696 KEMLaQCQTLLRELE 710
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
167-769 |
3.11e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 48.03 E-value: 3.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 167 TNKQLSSTIEELKQQNQ---DTLDQLEkekkdyqQKLAKEQGSLREQLQVH--IQTIGILVSEKAELQTALAHTQQAARQ 241
Cdd:PRK04863 436 TADNAEDWLEEFQAKEQeatEELLSLE-------QKLSVAQAAHSQFEQAYqlVRKIAGEVSRSEAWDVARELLRRLREQ 508
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 242 KAgesedLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDAlklelyknsksNEDLRQQNSELEEKLRVLVA 321
Cdd:PRK04863 509 RH-----LAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDD-----------EDELEQLQEELEARLESLSE 572
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 322 EKAAAQLGVEELQKKLEMSELLLQQFSS--------QSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAE 393
Cdd:PRK04863 573 SVSEARERRMALRQQLEQLQARIQRLAArapawlaaQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAA 652
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 394 N---LKGESAMWQQ-------RVQQMAEQVHTLKEEKEHRERQVQE---LETSLAALRSQMEEPPppeppagPSEAEEQL 460
Cdd:PRK04863 653 RkqaLDEEIERLSQpggsedpRLNALAERFGGVLLSEIYDDVSLEDapyFSALYGPARHAIVVPD-------LSDAAEQL 725
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 461 QGEvEQLHKELERLTGQLR--------AQVQDNESLSHLNREQ-----------------EGRLLELEREAQRWSEQAEE 515
Cdd:PRK04863 726 AGL-EDCPEDLYLIEGDPDsfddsvfsVEELEKAVVVKIADRQwrysrfpevplfgraarEKRIEQLRAEREELAERYAT 804
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 516 RKQILESMQSDRTTISRALSQN-------------RELKEQLAELQNGFVRLTNENMEITSALQSeqhvKKELARKLGEL 582
Cdd:PRK04863 805 LSFDVQKLQRLHQAFSRFIGSHlavafeadpeaelRQLNRRRVELERALADHESQEQQQRSQLEQ----AKEGLSALNRL 880
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 583 QERLGELKEtvELKSQEAQGLQEQRDQClshlqQYAAAY-QQHLAAYEQLtsEKEAIhkqlLLQTqlmDQLQHEEVQGkm 661
Cdd:PRK04863 881 LPRLNLLAD--ETLADRVEEIREQLDEA-----EEAKRFvQQHGNALAQL--EPIVS----VLQS---DPEQFEQLKQ-- 942
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 662 AAELARQELQEAQERLKATSQENQQLQAQLSLLVlpgegdvdqeeedeevpqsslaiPEDLDSREAMVAFFNAAIARAEE 741
Cdd:PRK04863 943 DYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDA-----------------------AEMLAKNSDLNEKLRQRLEQAEQ 999
|
650 660
....*....|....*....|....*...
gi 1039762465 742 EQARLRVQLKEQKARCRSLSHLAAPVQS 769
Cdd:PRK04863 1000 ERTRAREQLRQAQAQLAQYNQVLASLKS 1027
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
189-650 |
3.55e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 3.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 189 LEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLS 268
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 269 tvstqqkqadryNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEklrvLVAEKAAAQLGVEELQKKLEMsELLLQQFS 348
Cdd:COG4717 127 ------------LLPLYQELEALEAELAELPERLEELEERLEELRE----LEEELEELEAELAELQEELEE-LLEQLSLA 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 349 SQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAmwQQRVQQMAEQ---------VHTLKEE 419
Cdd:COG4717 190 TEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAAL--EERLKEARLLlliaaallaLLGLGGS 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 420 KEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEV------EQLHKELERLTGQLRAQVQDNESLSHLNR 493
Cdd:COG4717 268 LLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPAleeleeEELEELLAALGLPPDLSPEELLELLDRIE 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 494 EQEGRLLELEREAQR--WSEQAEERKQILESMQ-SDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALqsEQH 570
Cdd:COG4717 348 ELQELLREAEELEEElqLEELEQEIAALLAEAGvEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELL--EAL 425
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 571 VKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQcLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMD 650
Cdd:COG4717 426 DEEELEEELEELEEELEELEEELEELREELAELEAELEQ-LEEDGELAELLQELEELKAELRELAEEWAALKLALELLEE 504
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
457-888 |
6.13e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 6.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 457 EEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALsQ 536
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLL-Q 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 537 NRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQ 616
Cdd:COG4717 127 LLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQ 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 617 YAAAYQQHLaayEQLTSEKEAIHKQLllqtqlmdqlqhEEVQGKMAAELARQELQEAQERLKATS-------QENQQLQA 689
Cdd:COG4717 207 RLAELEEEL---EEAQEELEELEEEL------------EQLENELEAAALEERLKEARLLLLIAAallallgLGGSLLSL 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 690 QLSLLVLPGEGDVDQEEEDEEVPQSSLAIPEDLDSREAMVAFFNAAIARAEEEQARLRVQLKEQKARCRSLSHLAAPVQS 769
Cdd:COG4717 272 ILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQE 351
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 770 KLEKEAVVPRNVDDSASEESNQAL----HVAMEKLQSRFLEVMQEKVELKERVEELEHcciQLSGETDTIGEYIAlyQNQ 845
Cdd:COG4717 352 LLREAEELEEELQLEELEQEIAALlaeaGVEDEEELRAALEQAEEYQELKEELEELEE---QLEELLGELEELLE--ALD 426
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 1039762465 846 RAVLKARHLEKEEYISRLAQDKEEMKVKLLELQELVLRLVNER 888
Cdd:COG4717 427 EEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDG 469
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
403-609 |
7.38e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 7.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 403 QQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAgpSEAEEQLQGEVEQLHKELERLTGQLRAQV 482
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL--EAELAELEKEIAELRAELEAQKEELAELL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 483 QDNESLSHLNREQE----GRLLELEREAQRWSEQAEERKQILEsmqsdrttisralsqnrELKEQLAELQNGFVRLTNEN 558
Cdd:COG4942 111 RALYRLGRQPPLALllspEDFLDAVRRLQYLKYLAPARREQAE-----------------ELRADLAELAALRAELEAER 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1039762465 559 MEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQ 609
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE 224
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
254-507 |
8.24e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.55 E-value: 8.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 254 QSSRQRVGELERTLSTVstqQKQADRYNKDLtkERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEEL 333
Cdd:COG3206 164 QNLELRREEARKALEFL---EEQLPELRKEL--EEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 334 QKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLEThvsqlmeslkQLQVERDQYAENlkgesamwQQRVQQMAEQV 413
Cdd:COG3206 239 EARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEA----------ELAELSARYTPN--------HPDVIALRAQI 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 414 HTLKEEKEHRERQV-QELETSLAALRSQmeeppppeppagpseaEEQLQGEVEQLHKELERLTgqlraqvqdneslshln 492
Cdd:COG3206 301 AALRAQLQQEAQRIlASLEAELEALQAR----------------EASLQAQLAQLEARLAELP----------------- 347
|
250
....*....|....*
gi 1039762465 493 rEQEGRLLELEREAQ 507
Cdd:COG3206 348 -ELEAELRRLEREVE 361
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
374-822 |
9.97e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 9.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 374 VSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQV---HTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPP 450
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEeeyAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 451 AGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERkqilesMQSDRTTI 530
Cdd:COG4717 128 LPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEE------LQDLAEEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 531 SRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKK--ELARKLGELQERLGELKETVELKSQEAQGLQEQRD 608
Cdd:COG4717 202 EELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERlkEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFL 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 609 QCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQENQQLQ 688
Cdd:COG4717 282 VLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEE 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 689 AQLSLlvlpgegdvdqeeedeevpqsslaipedlDSREAMVAFFNAAIARAEEEQARLRVQLKEQKARCRSLSHLAAPVQ 768
Cdd:COG4717 362 ELQLE-----------------------------ELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLE 412
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1039762465 769 SKLEKEAVVPRNVDDSASEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELE 822
Cdd:COG4717 413 ELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLE 466
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
404-664 |
1.25e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.21 E-value: 1.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 404 QRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPP----AGPSEAEEQLQGEVEQLHKELERLTGQLR 479
Cdd:PRK03918 186 KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEleelKEEIEELEKELESLEGSKRKLEEKIRELE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 480 AQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLtnenm 559
Cdd:PRK03918 266 ERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL----- 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 560 eitsalqseqhvkKELARKLGELQERLGELKETVELkSQEAQGLQEQRDQCLSHLQQYAAayQQHLAAYEQLTSEKEAIH 639
Cdd:PRK03918 341 -------------EELKKKLKELEKRLEELEERHEL-YEEAKAKKEELERLKKRLTGLTP--EKLEKELEELEKAKEEIE 404
|
250 260
....*....|....*....|....*
gi 1039762465 640 KQLLLQTQLMDQLQHEEVQGKMAAE 664
Cdd:PRK03918 405 EEISKITARIGELKKEIKELKKAIE 429
|
|
| COG4995 |
COG4995 |
Uncharacterized conserved protein, contains CHAT domain [Function unknown]; |
118-536 |
1.42e-04 |
|
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
Pssm-ID: 444019 [Multi-domain] Cd Length: 711 Bit Score: 45.73 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 118 SLRQLSQQLNGLVSESTSYINGEGLTSSNMKELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDYQ 197
Cdd:COG4995 35 AAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALALALLAAALALALAAAALAALALLAALLA 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 198 QKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQA 277
Cdd:COG4995 115 LAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLALALALAAAALALLALLLAALAAALAAA 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 278 DRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGN 357
Cdd:COG4995 195 AAALALLLALLLLAALAAALAAALAALLLALLALAAALLALLLLALLALAAAAAALAAAAAALLALAAALLLLAALAALA 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 358 EQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAAL 437
Cdd:COG4995 275 AAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLLLLAALALLALLLLLAAAALLAAALAAALA 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 438 RSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERK 517
Cdd:COG4995 355 LAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAAAQLLRLLLAALALLLALAAYAAARLALLA 434
|
410
....*....|....*....
gi 1039762465 518 QILESMQSDRTTISRALSQ 536
Cdd:COG4995 435 LIEYIILPDRLYAFVQLYQ 453
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
168-606 |
1.55e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.78 E-value: 1.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 168 NKQLSSTIEELKQQNQDTLDQLEKEKKDYQQKlakeqgslREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESE 247
Cdd:TIGR04523 213 NKSLESQISELKKQNNQLKDNIEKKQQEINEK--------TTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIK 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 248 DLASRLQSSRQRVGELErtlstvstQQKQADrYNKDLT-------KERDALKLELYKNSKSNEDLRQQNSELEEKLRVLV 320
Cdd:TIGR04523 285 ELEKQLNQLKSEISDLN--------NQKEQD-WNKELKselknqeKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 321 AEKAAAQLGVEELQKKL-----EMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVErdqyAENL 395
Cdd:TIGR04523 356 SENSEKQRELEEKQNEIeklkkENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE----IERL 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 396 KGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEppagpseaeEQLQGEVEQLHKELERLT 475
Cdd:TIGR04523 432 KETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNL---------EQKQKELKSKEKELKKLN 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 476 GQLRaqvQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRAL--SQNRELKEQLAELQNGFVR 553
Cdd:TIGR04523 503 EEKK---ELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENleKEIDEKNKEIEELKQTQKS 579
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1039762465 554 LTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQ 606
Cdd:TIGR04523 580 LKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSI 632
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
176-394 |
2.41e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.33 E-value: 2.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 176 EELKQQNQDTLDQLEKEKKDYQQKLAKEQ------------------------------GSLREQLQVHIQTIG-ILVSE 224
Cdd:PRK04863 382 EARAEAAEEEVDELKSQLADYQQALDVQQtraiqyqqavqalerakqlcglpdltadnaEDWLEEFQAKEQEATeELLSL 461
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 225 KAELQTALAHTQQ----------------------AARQKAGESED---LASRLQSSRQRVGELERTLSTVSTQQKQADR 279
Cdd:PRK04863 462 EQKLSVAQAAHSQfeqayqlvrkiagevsrseawdVARELLRRLREqrhLAEQLQQLRMRLSELEQRLRQQQRAERLLAE 541
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 280 YNKDLTKERDAlklelyknsksNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSS--------QS 351
Cdd:PRK04863 542 FCKRLGKNLDD-----------EDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAArapawlaaQD 610
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1039762465 352 SAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAEN 394
Cdd:PRK04863 611 ALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAAR 653
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
226-547 |
2.68e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 2.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 226 AELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQAdrynkDLTKERDALKLELYKNSKSNEDL 305
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVA-----SAEREIAELEAELERLDASSDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 306 R---QQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLqhamEERAQLETHVSQLMESLK 382
Cdd:COG4913 688 AaleEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARL----ELRALLEERFAAALGDAV 763
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 383 QLQVeRDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRerqVQELETSLAALRSQMEEPPPPEPPAGPsEAEEQLQG 462
Cdd:COG4913 764 EREL-RENLEERIDALRARLNRAEEELERAMRAFNREWPAE---TADLDADLESLPEYLALLDRLEEDGLP-EYEERFKE 838
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 463 EV-EQLHKELERLTGQLRAQVQD--------NESLSHLnREQEGRLLELEREAQRwSEQAEERKQILESMQSDRTTISRA 533
Cdd:COG4913 839 LLnENSIEFVADLLSKLRRAIREikeridplNDSLKRI-PFGPGRYLRLEARPRP-DPEVREFRQELRAVTSGASLFDEE 916
|
330
....*....|....
gi 1039762465 534 LSQNRElkEQLAEL 547
Cdd:COG4913 917 LSEARF--AALKRL 928
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
245-858 |
3.30e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.65 E-value: 3.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 245 ESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRynkdlTKERDALKLELYKNSKSN-EDLRQQNSELEEKLRVLVAEK 323
Cdd:PRK02224 200 EEKDLHERLNGLESELAELDEEIERYEEQREQARE-----TRDEADEVLEEHEERREElETLEAEIEDLRETIAETERER 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 324 AAAQLGVEELQKKLEmsELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQY---AENLKGESA 400
Cdd:PRK02224 275 EELAEEVRDLRERLE--ELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHneeAESLREDAD 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 401 MWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGpsEAEEQLQGEVEQLHKELERLTGQLRA 480
Cdd:PRK02224 353 DLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAP--VDLGNAEDFLEELREERDELREREAE 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 481 QVQDNESLShlNREQEGRLLeleREAQRWSE--QAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTnen 558
Cdd:PRK02224 431 LEATLRTAR--ERVEEAEAL---LEAGKCPEcgQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAE--- 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 559 meitSALQSEQHVKKeLARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQ-QYAAAYQQHLAAYEQLtSEKEA 637
Cdd:PRK02224 503 ----DLVEAEDRIER-LEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEeKREAAAEAEEEAEEAR-EEVAE 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 638 IHKQLLLQTQLMDQLQHEEVQGKMAAElARQELQEAQERLKATSQENQQLQAQLSLLVLPgegdvdqeeedeevpQSSLA 717
Cdd:PRK02224 577 LNSKLAELKERIESLERIRTLLAAIAD-AEDEIERLREKREALAELNDERRERLAEKRER---------------KRELE 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 718 ipEDLDsrEAMVAFFNAAIARAEEEQARLRVQLKEQKARCRSLSHLAAPVQSKLEkeavvprnvddsaseesnqalhvam 797
Cdd:PRK02224 641 --AEFD--EARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELE------------------------- 691
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039762465 798 eklqsrflevmqEKVELKERVEELEHCCIQLSGETDTIGEYIALYQNQRAVLKARHLEKEE 858
Cdd:PRK02224 692 ------------ELEELRERREALENRVEALEALYDEAEELESMYGDLRAELRQRNVETLE 740
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
148-642 |
3.45e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.78 E-value: 3.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 148 KELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKkDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAE 227
Cdd:pfam01576 71 QELEEILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEE-AARQKLQLEKVTTEAKIKKLEEDILLLEDQNSK 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 228 LQ---TALAHTQQAARQKAGESEDLASRLQSSRQRvgeLERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNED 304
Cdd:pfam01576 150 LSkerKLLEERISEFTSNLAEEEEKAKSLSKLKNK---HEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAE 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 305 LRQQNSELEEKLRVLVAEKAAAQLGVEElqKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQL 384
Cdd:pfam01576 227 LQAQIAELRAQLAKKEEELQAALARLEE--ETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEAL 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 385 QVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEP--PPPEPPAGPSEAEEQLQG 462
Cdd:pfam01576 305 KTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQleQAKRNKANLEKAKQALES 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 463 EVEQLHKELERLTGQlraqVQDNEslsHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRAL-------- 534
Cdd:pfam01576 385 ENAELQAELRTLQQA----KQDSE---HKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLneaegkni 457
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 535 ----------SQNRELKEQLAE-------LQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKS 597
Cdd:pfam01576 458 klskdvssleSQLQDTQELLQEetrqklnLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDA 537
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 1039762465 598 QEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQL 642
Cdd:pfam01576 538 GTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQEL 582
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
171-396 |
3.57e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.62 E-value: 3.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 171 LSSTIEELKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHI-----QTIGILVSEKAELQTALAHTQQAARQKAGE 245
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGlvdlsEEAKLLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 246 SEDLASRLQSSRQRVGELERTLSTVSTQQKQAdrynkDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAE-KA 324
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSPVIQQLRAQLA-----ELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRiLA 316
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039762465 325 AAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHV-SQLMESLKQLQVERDQYAENLK 396
Cdd:COG3206 317 SLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELyESLLQRLEEARLAEALTVGNVR 389
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
169-549 |
4.38e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.24 E-value: 4.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 169 KQLSSTIEELKQQ-NQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQ---TIGILVSEKAELQTALAHTQQAARQKAG 244
Cdd:TIGR04523 291 NQLKSEISDLNNQkEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQlneQISQLKKELTNSESENSEKQRELEEKQN 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 245 ESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKA 324
Cdd:TIGR04523 371 EIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDS 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 325 AAQLGVEELQKKLEMSELLLQQFSSQSsaaggNEQLQHAMEERAQLETHVSQLmESLKQLQVERDQYAENLKGESAMWQQ 404
Cdd:TIGR04523 451 VKELIIKNLDNTRESLETQLKVLSRSI-----NKIKQNLEQKQKELKSKEKEL-KKLNEEKKELEEKVKDLTKKISSLKE 524
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 405 RVQQmaeqvhtLKEEKEHRERQVQELETSLAALRSQMEEppppeppagpseaeEQLQGEVEQLHKELERLTgqlraqvQD 484
Cdd:TIGR04523 525 KIEK-------LESEKKEKESKISDLEDELNKDDFELKK--------------ENLEKEIDEKNKEIEELK-------QT 576
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039762465 485 NESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDrttISRALSQNRELKEQLAELQN 549
Cdd:TIGR04523 577 QKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKE---LEKAKKENEKLSSIIKNIKS 638
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
108-381 |
5.70e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 43.89 E-value: 5.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 108 EETKTFSSTESLRQLSQQL---NGLVSESTSYINGEGLTSSNMKELENRYQELAVALDSSYVTNKQLsstiEELKQQNQD 184
Cdd:PRK10929 128 EQDRAREISDSLSQLPQQQteaRRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELEL----AQLSANNRQ 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 185 TLDQLEKE--KKDYQQKLAKEQGsLREQLQVHIQtigilvsEKAELqtALAHTQQAARQKAGESEDLASRLQSSRQRVGE 262
Cdd:PRK10929 204 ELARLRSElaKKRSQQLDAYLQA-LRNQLNSQRQ-------REAER--ALESTELLAEQSGDLPKSIVAQFKINRELSQA 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 263 LE---RTLSTVSTQQKQADrynKDLTKERDALKlELYKNSK----SN---EDLRQQNSELEEKLRVLVAEKAAAQLGVee 332
Cdd:PRK10929 274 LNqqaQRMDLIASQQRQAA---SQTLQVRQALN-TLREQSQwlgvSNalgEALRAQVARLPEMPKPQQLDTEMAQLRV-- 347
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1039762465 333 lqKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEE--RAQLETHvSQLMESL 381
Cdd:PRK10929 348 --QRLRYEDLLNKQPQLRQIRQADGQPLTAEQNRilDAQLRTQ-RELLNSL 395
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
457-683 |
6.01e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 6.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 457 EEQLQGEVEQLHKELERLTGQL---RAQVqdneslshlnREQEGRLLELeREAQRWSEQAEERKQILESMQSDRTTISRA 533
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLpelRKEL----------EEAEAALEEF-RQKNGLVDLSEEAKLLLQQLSELESQLAEA 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 534 LSQNRELKEQLAELQNgfvRLTNENMEITSALQSEqhVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSH 613
Cdd:COG3206 232 RAELAEAEARLAALRA---QLGSGPDALPELLQSP--VIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQ 306
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039762465 614 LQQYAAAYQQHL-AAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMA---AELARQELQEAQERLKATSQE 683
Cdd:COG3206 307 LQQEAQRILASLeAELEALQAREASLQAQLAQLEARLAELPELEAELRRLereVEVARELYESLLQRLEEARLA 380
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
155-440 |
6.33e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.79 E-value: 6.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 155 QELAVALDSSyvtNKQLSSTIEELKQQNQDTLDQLEKEKKDYQQKL--AKEQGSLREQLQ---------VHIQTIGILVS 223
Cdd:COG3096 824 GHLAVAFAPD---PEAELAALRQRRSELERELAQHRAQEQQLRQQLdqLKEQLQLLNKLLpqanlladeTLADRLEELRE 900
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 224 EKAELQTALAHTQQAARQkAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSksnE 303
Cdd:COG3096 901 ELDAAQEAQAFIQQHGKA-LAQLEPLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFALSEVVQRRPHFSYEDA---V 976
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 304 DLRQQNSELEEKLR--VLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESl 381
Cdd:COG3096 977 GLLGENSDLNEKLRarLEQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEELGVQADAEAEE- 1055
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1039762465 382 kQLQVERDQyaenLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQ 440
Cdd:COG3096 1056 -RARIRRDE----LHEELSQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAERDYKQEREQ 1109
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
241-683 |
8.19e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.56 E-value: 8.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 241 QKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSN----EDLR-------QQN 309
Cdd:pfam05483 251 EKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQkaleEDLQiatkticQLT 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 310 SELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQqfSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERD 389
Cdd:pfam05483 331 EEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLR--TEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELE 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 390 QYAENLKGESAMW--QQRVQQMAEQVHTLKEE----KEHRERQVQELETSLAALRSqmeeppppeppagpseAEEQLQGE 463
Cdd:pfam05483 409 ELKKILAEDEKLLdeKKQFEKIAEELKGKEQEliflLQAREKEIHDLEIQLTAIKT----------------SEEHYLKE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 464 VEQLHKELErltgqlRAQVQDNESLSHLNReqegRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQ 543
Cdd:pfam05483 473 VEDLKTELE------KEKLKNIELTAHCDK----LLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEK 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 544 LAELQNGFVRLTNENMEITSALQSEQHVKKELAR-----------KLGELQERLGELKETVELKSQEAQGLQEQRDQcls 612
Cdd:pfam05483 543 EMNLRDELESVREEFIQKGDEVKCKLDKSEENARsieyevlkkekQMKILENKCNNLKKQIENKNKNIEELHQENKA--- 619
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039762465 613 hLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAElarQELQEAQERLKATSQE 683
Cdd:pfam05483 620 -LKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISE---EKLLEEVEKAKAIADE 686
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
454-667 |
9.13e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 9.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 454 SEAEEQLQGEVEQLHKELERLTGQLRAQVQDN-------------ESLSHLNREQ---EGRLLELEREAQRWSEQAEERK 517
Cdd:COG3206 174 RKALEFLEEQLPELRKELEEAEAALEEFRQKNglvdlseeaklllQQLSELESQLaeaRAELAEAEARLAALRAQLGSGP 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 518 QILESMQSDrTTISRALSQNRELKEQLAELQNgfvRLTNENMEITSALQSEQHVKKELARklgELQERLGELKETVELKS 597
Cdd:COG3206 254 DALPELLQS-PVIQQLRAQLAELEAELAELSA---RYTPNHPDVIALRAQIAALRAQLQQ---EAQRILASLEAELEALQ 326
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 598 QEAQGLQEQRDQclshLQQYAAAYQQHLAAYEQLTSEKEAIHKQLllqTQLMDQLQHEEVQGKMAAELAR 667
Cdd:COG3206 327 AREASLQAQLAQ----LEARLAELPELEAELRRLEREVEVARELY---ESLLQRLEEARLAEALTVGNVR 389
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
291-652 |
9.49e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 43.12 E-value: 9.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 291 LKLELyKNSKSNEDLRQQNS--ELEEKLRVLVAEKAAAQlGVEELQKKLE----MSELLLQQFSSQSSAAGGNEQLQHAM 364
Cdd:PRK10929 28 ITQEL-EQAKAAKTPAQAEIveALQSALNWLEERKGSLE-RAKQYQQVIDnfpkLSAELRQQLNNERDEPRSVPPNMSTD 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 365 EERAQLETHVSQLMESLKQLQVERDqyaenlkgesamwqqRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEP 444
Cdd:PRK10929 106 ALEQEILQVSSQLLEKSRQAQQEQD---------------RAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPL 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 445 PPPEPPAGPSEAE------EQLqgEVEQL----HKELERLTG--------QLRAQVQDNESLSHLNREQEGRlLELEREA 506
Cdd:PRK10929 171 AQAQLTALQAESAalkalvDEL--ELAQLsannRQELARLRSelakkrsqQLDAYLQALRNQLNSQRQREAE-RALESTE 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 507 QRWSEQAEERKQILESMQSDRtTISRALSQNRELKEQLAELQNgfvRLTNENMEITSALQS--EQHVKKELARKLGE-LQ 583
Cdd:PRK10929 248 LLAEQSGDLPKSIVAQFKINR-ELSQALNQQAQRMDLIASQQR---QAASQTLQVRQALNTlrEQSQWLGVSNALGEaLR 323
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039762465 584 ---ERLGELKETVELKSQEAQgLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAI-HKQLLLQTQLMDQL 652
Cdd:PRK10929 324 aqvARLPEMPKPQQLDTEMAQ-LRVQRLRYEDLLNKQPQLRQIRQADGQPLTAEQNRIlDAQLRTQRELLNSL 395
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
146-492 |
9.77e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 43.19 E-value: 9.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 146 NMKELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLdqlekEKKDYQQKLA------KEQGSLRE---QLQVHIQ 216
Cdd:pfam05557 147 KASEAEQLRQNLEKQQSSLAEAEQRIKELEFEIQSQEQDSE-----IVKNSKSELAripeleKELERLREhnkHLNENIE 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 217 TIGILVSEKAELQTALAHTQQAARQKAG---------------------------ESEDLASRLQSSRQRVGELERTLST 269
Cdd:pfam05557 222 NKLLLKEEVEDLKRKLEREEKYREEAATlelekekleqelqswvklaqdtglnlrSPEDLSRRIEQLQQREIVLKEENSS 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 270 VSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSS 349
Cdd:pfam05557 302 LTSSARQLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILESYDKELTMSNYSPQLLER 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 350 QSSAAGGNEQLQ-HAMEERAQLE------THVSQLMESLKQ-LQVERDQYAENlkgESAMWQQRVQQMAEQVHTLKEEKE 421
Cdd:pfam05557 382 IEEAEDMTQKMQaHNEEMEAQLSvaeeelGGYKQQAQTLEReLQALRQQESLA---DPSYSKEEVDSLRRKLETLELERQ 458
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039762465 422 HRERQVQELETSLAALRSQ----MEEPPPPEPPAGP-SEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLN 492
Cdd:pfam05557 459 RLREQKNELEMELERRCLQgdydPKKTKVLHLSMNPaAEAYQQRKNQLEKLQAEIERLKRLLKKLEDDLEQVLRLP 534
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
351-547 |
1.10e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 351 SSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGEsamwQQRVQQMAEQVHTLKEEKEHRERQVQEL 430
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL----ERRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 431 ETSLAALRSQMEEPPPPEPP--------------------AGPSEAE---EQLQGEVEQLHKELERLTGQLRAQVQDNES 487
Cdd:COG4942 89 EKEIAELRAELEAQKEELAEllralyrlgrqpplalllspEDFLDAVrrlQYLKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 488 LSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAEL 547
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
176-414 |
1.21e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.02 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 176 EELKQQNQDTLDQLEKEKKDYQQKL------------------------------------------AKEQG------SL 207
Cdd:COG3096 381 EARLEAAEEEVDSLKSQLADYQQALdvqqtraiqyqqavqalekaralcglpdltpenaedylaafrAKEQQateevlEL 460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 208 REQLQV-------HIQTIGILVSEKAELQTALAHtqQAARQ---KAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQA 277
Cdd:COG3096 461 EQKLSVadaarrqFEKAYELVCKIAGEVERSQAW--QTAREllrRYRSQQALAQRLQQLRAQLAELEQRLRQQQNAERLL 538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 278 DRYNKDLTKERDAlklelyknsksNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSS-------- 349
Cdd:COG3096 539 EEFCQRIGQQLDA-----------AEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAArapawlaa 607
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039762465 350 QSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENlkgesamwQQRVQQMAEQVH 414
Cdd:COG3096 608 QDALERLREQSGEALADSQEVTAAMQQLLEREREATVERDELAAR--------KQALESQIERLS 664
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
157-383 |
1.27e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 157 LAVALDSSYVTNKQLSSTIEELKQQnqdtLDQLEKEkkdyQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQ 236
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQE----IAELEKE----LAALKKEEKALLKQLAALERRIAALARRIRALEQELAALE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 237 QAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQK-----------QADR---YNKDLTKERDALKLELYKNSKSN 302
Cdd:COG4942 83 AELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPlalllspedflDAVRrlqYLKYLAPARREQAEELRADLAEL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 303 EDLRQQNSELEEKLRVLVAEKAAAQlgvEELQKKLEMSELLLQQFSSQSSAAggNEQLQHAMEERAQLETHVSQLMESLK 382
Cdd:COG4942 163 AALRAELEAERAELEALLAELEEER---AALEALKAERQKLLARLEKELAEL--AAELAELQQEAEELEALIARLEAEAA 237
|
.
gi 1039762465 383 Q 383
Cdd:COG4942 238 A 238
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
506-683 |
1.51e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 506 AQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQER 585
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 586 LGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAEL 665
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170
....*....|....*...
gi 1039762465 666 ARQELQEAQERLKATSQE 683
Cdd:COG4942 179 LLAELEEERAALEALKAE 196
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
403-627 |
1.78e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 403 QQRVQQMAEQVHTLKEEKEHRER------QVQELETSLAALRSQMEEPPPPEPPagpsEAEEQLQGEVEQLHKELERLTG 476
Cdd:COG4913 241 HEALEDAREQIELLEPIRELAERyaaareRLAELEYLRAALRLWFAQRRLELLE----AELEELRAELARLEAELERLEA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 477 QLRAQVQDNESLSHLNREQEGRLLE-LEREAQRWSEQAEERKQilesmqsdrttisralsqnrelkeQLAELQNGFVRLT 555
Cdd:COG4913 317 RLDALREELDELEAQIRGNGGDRLEqLEREIERLERELEERER------------------------RRARLEALLAALG 372
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039762465 556 NENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAA 627
Cdd:COG4913 373 LPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLA 444
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
164-601 |
1.98e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.93 E-value: 1.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 164 SYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQ---TIGILVSEKAELQTALAHTQQAAR 240
Cdd:TIGR04523 20 SYVGYKNIANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNsnnKIKILEQQIKDLNDKLKKNKDKIN 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 241 QKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLV 320
Cdd:TIGR04523 100 KLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLE 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 321 AEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGG-NEQLQHAMEERAQLETHVSQLMESLKQLQVE---RDQYAENLK 396
Cdd:TIGR04523 180 KEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSlESQISELKKQNNQLKDNIEKKQQEINEKTTEisnTQTQLNQLK 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 397 GESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEeppppeppagpSEAEEQLQGEVEQLHKELERLTG 476
Cdd:TIGR04523 260 DEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKE-----------QDWNKELKSELKNQEKKLEEIQN 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 477 QLRaqvQDNESLSHLNRE---QEGRLLELEREAQRWSEQAEERKQILESMQSDrttISRALSQNRELKEQLAELQNGFVR 553
Cdd:TIGR04523 329 QIS---QNNKIISQLNEQisqLKKELTNSESENSEKQRELEEKQNEIEKLKKE---NQSYKQEIKNLESQINDLESKIQN 402
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 1039762465 554 LTNENMEITSALQSEQHVKKELARKLGELQERLGELKETV-ELKSQEAQ 601
Cdd:TIGR04523 403 QEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIkDLTNQDSV 451
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
148-336 |
2.15e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.98 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 148 KELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQlEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAE 227
Cdd:TIGR02169 808 SRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ-IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD 886
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 228 LQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNK-------------DLTKERDALKLE 294
Cdd:TIGR02169 887 LKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGedeeipeeelsleDVQAELQRVEEE 966
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1039762465 295 LYKNSKSN-------EDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKK 336
Cdd:TIGR02169 967 IRALEPVNmlaiqeyEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
94-426 |
2.18e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 42.20 E-value: 2.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 94 KRKSHDAGNCSNLMEETKTFSSteSLRQLSQqlngLVSESTSYINGEGLTSSNMKE--LENRYQELAVALDSSYVTNKQL 171
Cdd:PLN02939 57 KQRSSNSKLQSNTDENGQLENT--SLRTVME----LPQKSTSSDDDHNRASMQRDEaiAAIDNEQQTNSKDGEQLSDFQL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 172 SSTIEELK--QQNQDTLDQLEKEKKDYQQKLAKEqgslREQLQVHIQTIGILVSE-KAELQTAL---AHTQQAARQKAGE 245
Cdd:PLN02939 131 EDLVGMIQnaEKNILLLNQARLQALEDLEKILTE----KEALQGKINILEMRLSEtDARIKLAAqekIHVEILEEQLEKL 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 246 SEDLASRLQSSRQRVGELERTLSTVSTQqkqadryNKDLTKERDALKLELYKNSKSNED---LRQQNSELEEKLRVLVAE 322
Cdd:PLN02939 207 RNELLIRGATEGLCVHSLSKELDVLKEE-------NMLLKDDIQFLKAELIEVAETEERvfkLEKERSLLDASLRELESK 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 323 KAAAQ--------LGVEELQKKLEMSELLLQQFSSQSSAA----GGNEQLQHAME--ERAQLETHVSQ--------LMES 380
Cdd:PLN02939 280 FIVAQedvsklspLQYDCWWEKVENLQDLLDRATNQVEKAalvlDQNQDLRDKVDklEASLKEANVSKfssykvelLQQK 359
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1039762465 381 LKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQ 426
Cdd:PLN02939 360 LKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKRSLE 405
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
267-588 |
2.22e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 41.87 E-value: 2.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 267 LSTVSTQQKQADryNKDLTKERDALKLELYKNSKSNEDLRQQN-SELEEKLRVLVAEKAAAQLGVEELQKKLEMSElllQ 345
Cdd:COG5185 229 INIEEALKGFQD--PESELEDLAQTSDKLEKLVEQNTDLRLEKlGENAESSKRLNENANNLIKQFENTKEKIAEYT---K 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 346 QFSSQSSAAGGNEQLQhAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGEsamwQQRVQQMAEQVHTLkEEKEHRER 425
Cdd:COG5185 304 SIDIKKATESLEEQLA-AAEAEQELEESKRETETGIQNLTAEIEQGQESLTEN----LEAIKEEIENIVGE-VELSKSSE 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 426 QVQELETSLAALRSQMEEPPPPEPPAGPsEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELERE 505
Cdd:COG5185 378 ELDSFKDTIESTKESLDEIPQNQRGYAQ-EILATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMRE 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 506 AQ--RWSEQAEERKQILESMQSDRTTISRALSQ-NRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGEL 582
Cdd:COG5185 457 ADeeSQSRLEEAYDEINRSVRSKKEDLNEELTQiESRVSTLKATLEKLRAKLERQLEGVRSKLDQVAESLKDFMRARGYA 536
|
....*.
gi 1039762465 583 QERLGE 588
Cdd:COG5185 537 HILALE 542
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
168-683 |
2.38e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.82 E-value: 2.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 168 NKQLSSTIEELKQQNQDTLDQLEKeKKDYQQKLAKeqgsLREQLQvhiqtigilvsekaelqtalahtqqaarqkagese 247
Cdd:PRK11281 51 QKLLEAEDKLVQQDLEQTLALLDK-IDRQKEETEQ----LKQQLA----------------------------------- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 248 dlasrlqssrqrvgelertlstvstqqkQADRYNKDLTKERDALKlelyknSKSNEDLRQQNSeleeklrvlvaekaaaQ 327
Cdd:PRK11281 91 ----------------------------QAPAKLRQAQAELEALK------DDNDEETRETLS----------------T 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 328 LGVEELQKKLEmsELLLQQFSSQSSAAGGNEQL--QHAMEERAQlethvSQLMESlkqlqverdqyaenlkgesamwQQR 405
Cdd:PRK11281 121 LSLRQLESRLA--QTLDQLQNAQNDLAEYNSQLvsLQTQPERAQ-----AALYAN----------------------SQR 171
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 406 VQQMAEQVHTLKEEKEH-RERQVQELETSLAALRSQMEEPPPPEppagpsEAEEQLQGEVEQLHKELERLTGQLRAQVQD 484
Cdd:PRK11281 172 LQQIRNLLKGGKVGGKAlRPSQRVLLQAEQALLNAQNDLQRKSL------EGNTQLQDLLQKQRDYLTARIQRLEHQLQL 245
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 485 NESLshLNREqegRLLELEREAQrwseQAEERKQILESMQSDrtTISRALSQNRELKEQLAELQNGFVRLTNENMEIT-- 562
Cdd:PRK11281 246 LQEA--INSK---RLTLSEKTVQ----EAQSQDEAARIQANP--LVAQELEINLQLSQRLLKATEKLNTLTQQNLRVKnw 314
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 563 --SALQSEQHVKKE---------LARKLGELQERLGELKETVELKSQEAQ------GLQEQRDQcLSHLQQYAAAYQQHl 625
Cdd:PRK11281 315 ldRLTQSERNIKEQisvlkgsllLSRILYQQQQALPSADLIEGLADRIADlrleqfEINQQRDA-LFQPDAYIDKLEAG- 392
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039762465 626 aayeQLTSEKEAIHKQL--LLQT--QLMDQLQHEEVQGKMAA---ELARQELQEAQERLKATSQE 683
Cdd:PRK11281 393 ----HKSEVTDEVRDALlqLLDErrELLDQLNKQLNNQLNLAinlQLNQQQLLSVSDSLQSTLTQ 453
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
253-517 |
2.71e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 2.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 253 LQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDAL-KLELYKNSKSNEDLRQQNSELEEKL-RVLVAEKAAAQLGV 330
Cdd:PRK04863 839 LRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALnRLLPRLNLLADETLADRVEEIREQLdEAEEAKRFVQQHGN 918
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 331 -------------------EELQKKLEMSELLLQQFSSQSSA---------AGGNEQLQHAMEERAQLethVSQLMESLK 382
Cdd:PRK04863 919 alaqlepivsvlqsdpeqfEQLKQDYQQAQQTQRDAKQQAFAltevvqrraHFSYEDAAEMLAKNSDL---NEKLRQRLE 995
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 383 QLQVERDQYAENLKGEsamwQQRVQQmAEQVHT-LKEEKEHRERQVQELETSLAALRSQmeeppppeppaGPSEAEEQLQ 461
Cdd:PRK04863 996 QAEQERTRAREQLRQA----QAQLAQ-YNQVLAsLKSSYDAKRQMLQELKQELQDLGVP-----------ADSGAEERAR 1059
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1039762465 462 GEVEQLHKELeRLTGQLRAQVQDNESLSHLN-REQEGRLLELEREAQRWSEQAEERK 517
Cdd:PRK04863 1060 ARRDELHARL-SANRSRRNQLEKQLTFCEAEmDNLTKKLRKLERDYHEMREQVVNAK 1115
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
458-774 |
2.71e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 2.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 458 EQLQGEVEQLHKELERLTGQLRAQVQDNESLSHlNREQEGRLLELEREAQRWseqaeERKQILESMQSDRTTISRALSQN 537
Cdd:TIGR02169 173 EKALEELEEVEENIERLDLIIDEKRQQLERLRR-EREKAERYQALLKEKREY-----EGYELLKEKEALERQKEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 538 RELKEQLAELQngfVRLTNENMEITSALQSEQHVKKELARKLGELQERLGElkETVELKSQEAQgLQEQRDQCLSHLQQY 617
Cdd:TIGR02169 247 ASLEEELEKLT---EEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKE--KIGELEAEIAS-LERSIAEKERELEDA 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 618 AAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQENQQLQAQLSLLVLP 697
Cdd:TIGR02169 321 EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKRE 400
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039762465 698 GEGDVDQEEEDEevpqsslaipEDLDSREAMVAFFNAAIARAEEEQARLRVQLKEQKARCRSLSHLAAPVQSKLEKE 774
Cdd:TIGR02169 401 INELKRELDRLQ----------EELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKY 467
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
15-683 |
3.24e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.50 E-value: 3.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 15 EETRQSKLAAAKKKLREYQQKNspgvpagakkkkkiknghsperpTASDCQSPENIKDILKVLVSDLNRSNgvslppldk 94
Cdd:pfam02463 196 KLQELKLKEQAKKALEYYQLKE-----------------------KLELEEEYLLYLDYLKLNEERIDLLQ--------- 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 95 rkshdagncSNLMEETKTFSSTESLRQLSQQLNGLVSESTSYINGEgltSSNMKELENRYQELAVALDSSYVTNKQLSST 174
Cdd:pfam02463 244 ---------ELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKE---KKLQEEELKLLAKEEEELKSELLKLERRKVD 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 175 IEELKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQ 254
Cdd:pfam02463 312 DEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAK 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 255 SSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQ 334
Cdd:pfam02463 392 LKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSE 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 335 KKLEMSELLLQQFS----SQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQ--YAENLKGESAMWQQRVQQ 408
Cdd:pfam02463 472 DLLKETQLVKLQEQlellLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLgdLGVAVENYKVAISTAVIV 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 409 MAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESL 488
Cdd:pfam02463 552 EVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKD 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 489 SHLNREQEGRLLELEReaqrwsEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSE 568
Cdd:pfam02463 632 TELTKLKESAKAKESG------LRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKE 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 569 QHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQR-------DQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQ 641
Cdd:pfam02463 706 QREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKideeeeeEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEK 785
|
650 660 670 680
....*....|....*....|....*....|....*....|..
gi 1039762465 642 LLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQE 683
Cdd:pfam02463 786 LKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQE 827
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
175-675 |
3.35e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.48 E-value: 3.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 175 IEELKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREqlqvHIQTIGILVSEKAELQTALAHtqQAARQ---KAGESEDLAS 251
Cdd:COG3096 439 AEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQ----FEKAYELVCKIAGEVERSQAW--QTAREllrRYRSQQALAQ 512
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 252 RLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDAlklelyknsksNEDLRQQNSELEEKLRVLVAEKAAAQLGVE 331
Cdd:COG3096 513 RLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDA-----------AEELEELLAELEAQLEELEEQAAEAVEQRS 581
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 332 ELQKKLEMSELLLQQFSS--------QSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQyaenlkgesamwq 403
Cdd:COG3096 582 ELRQQLEQLRARIKELAArapawlaaQDALERLREQSGEALADSQEVTAAMQQLLEREREATVERDE------------- 648
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 404 qrvqqmaeqvhtLKEEKEHRERQVQELetslaalrsqmeeppppepPAGPSEAEEQLQGEVEQLHKEL------------ 471
Cdd:COG3096 649 ------------LAARKQALESQIERL-------------------SQPGGAEDPRLLALAERLGGVLlseiyddvtled 697
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 472 ----ERLTGQLR-AQVQDNESL--SHLNREQE--GRLLELEREAQRWSE---QAEERKQILESMQSDRT----------T 529
Cdd:COG3096 698 apyfSALYGPARhAIVVPDLSAvkEQLAGLEDcpEDLYLIEGDPDSFDDsvfDAEELEDAVVVKLSDRQwrysrfpevpL 777
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 530 ISRALSQNR--ELKEQLAELQNGFVRLTNENMEITSALQS-EQHVKKELARKLGELQErlgelketvelksQEAQGLQEQ 606
Cdd:COG3096 778 FGRAAREKRleELRAERDELAEQYAKASFDVQKLQRLHQAfSQFVGGHLAVAFAPDPE-------------AELAALRQR 844
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039762465 607 RDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKqLLLQTQLMDQLQHEEvqgkmAAELARQELQEAQE 675
Cdd:COG3096 845 RSELERELAQHRAQEQQLRQQLDQLKEQLQLLNK-LLPQANLLADETLAD-----RLEELREELDAAQE 907
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
144-366 |
4.18e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.20 E-value: 4.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 144 SSNMKELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDyQQKLAKEQGSLREQLQVHIQTIGILVS 223
Cdd:TIGR02168 802 REALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED-IESLAAEIEELEELIEELESELEALLN 880
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 224 EKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQAD---RYNKDLTKERDALKLELYKNSK 300
Cdd:TIGR02168 881 ERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEvriDNLQERLSEEYSLTLEEAEALE 960
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039762465 301 SNEDLRQQnsELEEKLRVLvaEKAAAQLG------VEELQKKLEMSELLLQQFSSQSSAAggnEQLQHAMEE 366
Cdd:TIGR02168 961 NKIEDDEE--EARRRLKRL--ENKIKELGpvnlaaIEEYEELKERYDFLTAQKEDLTEAK---ETLEEAIEE 1025
|
|
| COG4995 |
COG4995 |
Uncharacterized conserved protein, contains CHAT domain [Function unknown]; |
207-652 |
5.09e-03 |
|
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
Pssm-ID: 444019 [Multi-domain] Cd Length: 711 Bit Score: 40.72 E-value: 5.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 207 LREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTK 286
Cdd:COG4995 8 ALLAALLAALALALLALALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALAL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 287 ERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEE 366
Cdd:COG4995 88 ALLAAALALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 367 RAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPP 446
Cdd:COG4995 168 LALALAAAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAAALLALLLLALLALAAAA 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 447 PEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSD 526
Cdd:COG4995 248 AALAAAAAALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLLLL 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 527 RTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQ 606
Cdd:COG4995 328 AALALLALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAAAQ 407
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 1039762465 607 RDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIH--KQLLLQTQLMDQL 652
Cdd:COG4995 408 LLRLLLAALALLLALAAYAAARLALLALIEYIIlpDRLYAFVQLYQLL 455
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
112-326 |
5.68e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 5.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 112 TFSSTESLRQLSQQLNGLVSESTSYINGEGLTSSNMKELENRYQELAVALDSsyvTNKQLSSTIEELKQQNQDtLDQLEK 191
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAA---LARRIRALEQELAALEAE-LAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 192 EKKDYQQKLAKEQGSLREQLQ--------------VHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSR 257
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRalyrlgrqpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039762465 258 QRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAA 326
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
504-683 |
7.83e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 7.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 504 REAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQngfvrltnenmeitsalqseqhvKKELARKLGELQ 583
Cdd:COG4913 238 ERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALR-----------------------LWFAQRRLELLE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 584 ERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQH-LAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMA 662
Cdd:COG4913 295 AELEELRAELARLEAELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLAALGLP 374
|
170 180
....*....|....*....|.
gi 1039762465 663 AELARQELQEAQERLKATSQE 683
Cdd:COG4913 375 LPASAEEFAALRAEAAALLEA 395
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
187-546 |
8.03e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 40.19 E-value: 8.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 187 DQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERT 266
Cdd:pfam10174 358 ESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTA 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 267 LSTVSTQQKQADRYNKDLTKERDALKLELYKNSksnEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQK----------- 335
Cdd:pfam10174 438 LTTLEEALSEKERIIERLKEQREREDRERLEEL---ESLKKENKDLKEKVSALQPELTEKESSLIDLKEhasslassglk 514
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 336 ---KLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSqlmESLKQLQVERDQYAEnlkgESAMWQQRVQQMAEQ 412
Cdd:pfam10174 515 kdsKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVRTNPEIN---DRIRLLEQEVARYKE----ESGKAQAEVERLLGI 587
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 413 VHTLKEEKEHRERQVQELEtSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKElerltgqlraqvQDNESLSHLN 492
Cdd:pfam10174 588 LREVENEKNDKDKKIAELE-SLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRR------------EDNLADNSQQ 654
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1039762465 493 REQEGRLLELEREAQrwseQAEERKQILESMQSDRTTISRALSQNR-ELKEQLAE 546
Cdd:pfam10174 655 LQLEELMGALEKTRQ----ELDATKARLSSTQQSLAEKDGHLTNLRaERRKQLEE 705
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
176-879 |
9.40e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.16 E-value: 9.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 176 EELKQQNQDTLDQLEKEKKDYQQK---LAKEQGSLREQLQVHIQtigiLVSEKAELQTALAHTQQAARQ-------KAGE 245
Cdd:pfam01576 11 EEELQKVKERQQKAESELKELEKKhqqLCEEKNALQEQLQAETE----LCAEAEEMRARLAARKQELEEilhelesRLEE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 246 SEDLASRLQSSR----QRVGELERTLST--VSTQQKQADRYNKDL---TKERDALKLELYKNSKSNE---------DLRQ 307
Cdd:pfam01576 87 EEERSQQLQNEKkkmqQHIQDLEEQLDEeeAARQKLQLEKVTTEAkikKLEEDILLLEDQNSKLSKErklleerisEFTS 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 308 QNSELEEKLRVLVAEKAAAQLGVEELQ---KKLEMSELLLQQFSSQSSAAGGNEQLQHAmEERAQLETHVSQLMESLKQL 384
Cdd:pfam01576 167 NLAEEEEKAKSLSKLKNKHEAMISDLEerlKKEEKGRQELEKAKRKLEGESTDLQEQIA-ELQAQIAELRAQLAKKEEEL 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 385 QVERDQYAENLKGESAMwQQRVQQMAEQVHTLKEEKEHR-------ERQVQELETSLAALRSQMeePPPPEPPAGPSEAE 457
Cdd:pfam01576 246 QAALARLEEETAQKNNA-LKKIRELEAQISELQEDLESEraarnkaEKQRRDLGEELEALKTEL--EDTLDTTAAQQELR 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 458 EQLQGEVEQLHKELERLTGQLRAQVQDnesLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQN 537
Cdd:pfam01576 323 SKREQEVTELKKALEEETRSHEAQLQE---MRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQA 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 538 RELKEQLAELQNGFVRltnenmEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQY 617
Cdd:pfam01576 400 KQDSEHKRKKLEGQLQ------ELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDT 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 618 AAAYQQHLAAYEQLTSEKEAIHKQlllQTQLMDQLQhEEVQGKMAAELARQELQEAQERLKATSQENQqlqaqlsllvlp 697
Cdd:pfam01576 474 QELLQEETRQKLNLSTRLRQLEDE---RNSLQEQLE-EEEEAKRNVERQLSTLQAQLSDMKKKLEEDA------------ 537
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 698 gEGDVDQEEEDEEVPQSSLAIPEDLDSREAMVAFFNAAIARAEEEQARLRVQLKEQKARCRSLSHlaapVQSKLEKEAVV 777
Cdd:pfam01576 538 -GTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEK----KQKKFDQMLAE 612
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039762465 778 PRNVDDSASEESNQALHVAMEKlQSRFLEVMQEKVELKERVEELEHCCIQLSGETDtigeyiALYQNQRAVLKARHlEKE 857
Cdd:pfam01576 613 EKAISARYAEERDRAEAEAREK-ETRALSLARALEEALEAKEELERTNKQLRAEME------DLVSSKDDVGKNVH-ELE 684
|
730 740
....*....|....*....|..
gi 1039762465 858 EYISRLAQDKEEMKVKLLELQE 879
Cdd:pfam01576 685 RSKRALEQQVEEMKTQLEELED 706
|
|
| |
