NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1039775236|ref|XP_017177112|]
View 

transmembrane protein 72 isoform X1 [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
TMEM72 super family cl24578
Transmembrane protein family 72; This family of proteins is functionally uncharacterized. This ...
 2-97 2.17e-40

Transmembrane protein family 72; This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 145 and 275 amino acids in length.


The actual alignment was detected with superfamily member pfam16054:

Pssm-ID: 435102  Cd Length: 154  Bit Score: 135.60  E-value: 2.17e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039775236   2 LRFTGVTISVCEGTYFVAQLLAICFKCQPGSLAHRAKERAHWLGCFQKFLAYMLLSVACFLHPVLVWHVTIPGSMLIITG 81
Cdd:pfam16054  43 LLASGIAVSFLETSWFVTLLLDVCLRCEEGSMIFNCWKFVRWLGGFKKFLLYTVLSVACFLHPVLVWHVTIPGTMLVILG 122

                          90
                  ....*....|....*.
gi 1039775236  82 LAYFLLSKRKKKKAAP 97
Cdd:pfam16054 123 FLYFILSFRKKVSTGP 138
 
Name Accession Description Interval E-value
TMEM72 pfam16054
Transmembrane protein family 72; This family of proteins is functionally uncharacterized. This ...
 2-97 2.17e-40

Transmembrane protein family 72; This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 145 and 275 amino acids in length.


Pssm-ID: 435102  Cd Length: 154  Bit Score: 135.60  E-value: 2.17e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039775236   2 LRFTGVTISVCEGTYFVAQLLAICFKCQPGSLAHRAKERAHWLGCFQKFLAYMLLSVACFLHPVLVWHVTIPGSMLIITG 81
Cdd:pfam16054  43 LLASGIAVSFLETSWFVTLLLDVCLRCEEGSMIFNCWKFVRWLGGFKKFLLYTVLSVACFLHPVLVWHVTIPGTMLVILG 122

                          90
                  ....*....|....*.
gi 1039775236  82 LAYFLLSKRKKKKAAP 97
Cdd:pfam16054 123 FLYFILSFRKKVSTGP 138
 
Name Accession Description Interval E-value
TMEM72 pfam16054
Transmembrane protein family 72; This family of proteins is functionally uncharacterized. This ...
 2-97 2.17e-40

Transmembrane protein family 72; This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 145 and 275 amino acids in length.


Pssm-ID: 435102  Cd Length: 154  Bit Score: 135.60  E-value: 2.17e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039775236   2 LRFTGVTISVCEGTYFVAQLLAICFKCQPGSLAHRAKERAHWLGCFQKFLAYMLLSVACFLHPVLVWHVTIPGSMLIITG 81
Cdd:pfam16054  43 LLASGIAVSFLETSWFVTLLLDVCLRCEEGSMIFNCWKFVRWLGGFKKFLLYTVLSVACFLHPVLVWHVTIPGTMLVILG 122

                          90
                  ....*....|....*.
gi 1039775236  82 LAYFLLSKRKKKKAAP 97
Cdd:pfam16054 123 FLYFILSFRKKVSTGP 138
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH