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Conserved domains on  [gi|1046868495|ref|XP_017456513|]
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synaptopodin isoform X4 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PHA03247 super family cl33720
large tegument protein UL36; Provisional
516-863 4.28e-09

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 60.72  E-value: 4.28e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046868495  516 TNAPGGFRVASLSPARTPPASLYHGYLPENGVLRPEPTKQQPHQMRPSLYALSPVKEPAKISSRATSSRASSRTVSPRAA 595
Cdd:PHA03247  2667 ARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPA 2746
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046868495  596 SPAKPSSLDLVPNLPRAGLPPSPALPRPSRSSPglynAPVQDSLQPTAVSPTYSSDISPVSPSRAWSPRAKQAPRPSFST 675
Cdd:PHA03247  2747 GPATPGGPARPARPPTTAGPPAPAPPAAPAAGP----PRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAA 2822
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046868495  676 RNAGIEAQDrPESLPTSPPWTPGASRPPSSLDGWVSPGPWELGRGSSMGSPPPLPPPPPMSPSWSERSVSPLRSEAEARP 755
Cdd:PHA03247  2823 SPAGPLPPP-TSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALP 2901
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046868495  756 PSRQLQALLArniiNAARRKSASPRPAPAETLRPFSPPQGPPPPPPPPRMRSPQPARPAGNFRGAAFSPIPRSPLPVGPS 835
Cdd:PHA03247  2902 PDQPERPPQP----QAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRF 2977
                          330       340
                   ....*....|....*....|....*...
gi 1046868495  836 SCTSPRSPQAAPSRPFPYRRSPTDSDVS 863
Cdd:PHA03247  2978 RVPQPAPSREAPASSTPPLTGHSLSRVS 3005
PRK13914 super family cl36314
invasion associated endopeptidase;
15-125 2.21e-06

invasion associated endopeptidase;


The actual alignment was detected with superfamily member PRK13914:

Pssm-ID: 237555 [Multi-domain]  Cd Length: 481  Bit Score: 51.34  E-value: 2.21e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046868495  15 EKVASEEEEVPLVvylKENAALLTANglhlSQNRET---QQSSPNPPETEEVPSPAADINQNPSSPNATLTTAASNSHHN 91
Cdd:PRK13914  259 EAPAAEKQAAPVV---KENTNTNTAT----TEKKETttqQQTAPKAPTEAAKPAPAPSTNTNANKTNTNTNTNTNNTNTS 331
                          90       100       110
                  ....*....|....*....|....*....|....
gi 1046868495  92 QPTADVNQNpPATITPVQQNSSETQCSPNGTLDS 125
Cdd:PRK13914  332 TPSKNTNTN-TNSNTNTNSNTNANQGSSNNNSNS 364
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
516-863 4.28e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 60.72  E-value: 4.28e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046868495  516 TNAPGGFRVASLSPARTPPASLYHGYLPENGVLRPEPTKQQPHQMRPSLYALSPVKEPAKISSRATSSRASSRTVSPRAA 595
Cdd:PHA03247  2667 ARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPA 2746
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046868495  596 SPAKPSSLDLVPNLPRAGLPPSPALPRPSRSSPglynAPVQDSLQPTAVSPTYSSDISPVSPSRAWSPRAKQAPRPSFST 675
Cdd:PHA03247  2747 GPATPGGPARPARPPTTAGPPAPAPPAAPAAGP----PRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAA 2822
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046868495  676 RNAGIEAQDrPESLPTSPPWTPGASRPPSSLDGWVSPGPWELGRGSSMGSPPPLPPPPPMSPSWSERSVSPLRSEAEARP 755
Cdd:PHA03247  2823 SPAGPLPPP-TSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALP 2901
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046868495  756 PSRQLQALLArniiNAARRKSASPRPAPAETLRPFSPPQGPPPPPPPPRMRSPQPARPAGNFRGAAFSPIPRSPLPVGPS 835
Cdd:PHA03247  2902 PDQPERPPQP----QAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRF 2977
                          330       340
                   ....*....|....*....|....*...
gi 1046868495  836 SCTSPRSPQAAPSRPFPYRRSPTDSDVS 863
Cdd:PHA03247  2978 RVPQPAPSREAPASSTPPLTGHSLSRVS 3005
PRK13914 PRK13914
invasion associated endopeptidase;
15-125 2.21e-06

invasion associated endopeptidase;


Pssm-ID: 237555 [Multi-domain]  Cd Length: 481  Bit Score: 51.34  E-value: 2.21e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046868495  15 EKVASEEEEVPLVvylKENAALLTANglhlSQNRET---QQSSPNPPETEEVPSPAADINQNPSSPNATLTTAASNSHHN 91
Cdd:PRK13914  259 EAPAAEKQAAPVV---KENTNTNTAT----TEKKETttqQQTAPKAPTEAAKPAPAPSTNTNANKTNTNTNTNTNNTNTS 331
                          90       100       110
                  ....*....|....*....|....*....|....
gi 1046868495  92 QPTADVNQNpPATITPVQQNSSETQCSPNGTLDS 125
Cdd:PRK13914  332 TPSKNTNTN-TNSNTNTNSNTNANQGSSNNNSNS 364
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
516-863 4.28e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 60.72  E-value: 4.28e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046868495  516 TNAPGGFRVASLSPARTPPASLYHGYLPENGVLRPEPTKQQPHQMRPSLYALSPVKEPAKISSRATSSRASSRTVSPRAA 595
Cdd:PHA03247  2667 ARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPA 2746
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046868495  596 SPAKPSSLDLVPNLPRAGLPPSPALPRPSRSSPglynAPVQDSLQPTAVSPTYSSDISPVSPSRAWSPRAKQAPRPSFST 675
Cdd:PHA03247  2747 GPATPGGPARPARPPTTAGPPAPAPPAAPAAGP----PRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAA 2822
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046868495  676 RNAGIEAQDrPESLPTSPPWTPGASRPPSSLDGWVSPGPWELGRGSSMGSPPPLPPPPPMSPSWSERSVSPLRSEAEARP 755
Cdd:PHA03247  2823 SPAGPLPPP-TSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALP 2901
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046868495  756 PSRQLQALLArniiNAARRKSASPRPAPAETLRPFSPPQGPPPPPPPPRMRSPQPARPAGNFRGAAFSPIPRSPLPVGPS 835
Cdd:PHA03247  2902 PDQPERPPQP----QAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRF 2977
                          330       340
                   ....*....|....*....|....*...
gi 1046868495  836 SCTSPRSPQAAPSRPFPYRRSPTDSDVS 863
Cdd:PHA03247  2978 RVPQPAPSREAPASSTPPLTGHSLSRVS 3005
PRK13914 PRK13914
invasion associated endopeptidase;
15-125 2.21e-06

invasion associated endopeptidase;


Pssm-ID: 237555 [Multi-domain]  Cd Length: 481  Bit Score: 51.34  E-value: 2.21e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046868495  15 EKVASEEEEVPLVvylKENAALLTANglhlSQNRET---QQSSPNPPETEEVPSPAADINQNPSSPNATLTTAASNSHHN 91
Cdd:PRK13914  259 EAPAAEKQAAPVV---KENTNTNTAT----TEKKETttqQQTAPKAPTEAAKPAPAPSTNTNANKTNTNTNTNTNNTNTS 331
                          90       100       110
                  ....*....|....*....|....*....|....
gi 1046868495  92 QPTADVNQNpPATITPVQQNSSETQCSPNGTLDS 125
Cdd:PRK13914  332 TPSKNTNTN-TNSNTNTNSNTNANQGSSNNNSNS 364
PHA03247 PHA03247
large tegument protein UL36; Provisional
593-852 6.22e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.77  E-value: 6.22e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046868495  593 RAASPAKPSSLDLVPNLPRAGLPPSPALPRPSRSSPGLY-NAPVQDSLQPTAVS-----------------PTYSSDISP 654
Cdd:PHA03247  2482 RPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILpDEPVGEPVHPRMLTwirgleelasddagdppPPLPPAAPP 2561
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046868495  655 VSPSRAwSPRAKQAPRP------SFSTRNAGIEAQDRPE------------SLPTSPPWTPGASRPPSSLDGWVSPGPWE 716
Cdd:PHA03247  2562 AAPDRS-VPPPRPAPRPsepavtSRARRPDAPPQSARPRapvddrgdprgpAPPSPLPPDTHAPDPPPPSPSPAANEPDP 2640
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046868495  717 LGRGSSMGSPPPLPPPPPMSPSWSERSVSPLRSEAEARPPSRQLQALL---ARNIINAARRKSASPRPAPAET-----LR 788
Cdd:PHA03247  2641 HPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAArptVGSLTSLADPPPPPPTPEPAPHalvsaTP 2720
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1046868495  789 PFSPPQGPPPPPPPPRMRSPQPARPAGNFRGAAFSPIPRSPLPVGPSSCTSPRSPQAAPSRPFP 852
Cdd:PHA03247  2721 LPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLT 2784
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
35-127 5.25e-03

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 40.61  E-value: 5.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046868495  35 ALLTANGLHLSQNRETQQSSPNPPETEE----VPSPAADINQNPSSPNATlTTAASNShhNQPTADVNQNPPATITPVQQ 110
Cdd:PRK11907   16 ALLTASNPKLAQAEEIVTTTPATSTEAEqttpVESDATEEADNTETPVAA-TTAAEAP--SSSETAETSDPTSEATDTTT 92
                          90
                  ....*....|....*..
gi 1046868495 111 NSSETQCSPNgTLDSKP 127
Cdd:PRK11907   93 SEARTVTPAA-TETSKP 108
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
488-708 5.34e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.60  E-value: 5.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046868495 488 YVIESSGHAELARCPSP----TMSLPSSWKYTTNAPGGFRVASLSPARTPPASLYHGYLPENGVLRPEPTKQQPhqmrPS 563
Cdd:PRK07003  328 YQIATVGRGELGLAPDEyagfTMTLLRMLAFEPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTA----VT 403
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046868495 564 LYALSPVKEPAKISSRATSSRASSRTVSPRAASPAKPSSLDLVPNLPRAGLPPSPALPRPSRSSPGLYNAPVQDSLQPTA 643
Cdd:PRK07003  404 GAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASD 483
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1046868495 644 VSPTYSSDISP--VSPSRAWSPRAKQAPRPSFSTRNAGIEAQDRPEslPTSPPWTPGASRPPSSLDG 708
Cdd:PRK07003  484 APPDAAFEPAPraAAPSAATPAAVPDARAPAAASREDAPAAAAPPA--PEARPPTPAAAAPAARAGG 548
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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