inaD-like protein isoform X5 [Homo sapiens]
L27_2 and PDZ_signaling domain-containing protein( domain architecture ID 13154871)
protein containing domains L27_2, CtpA, and PDZ_signaling
List of domain hits
Name | Accession | Description | Interval | E-value | |||
PDZ_signaling | cd00992 | PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. ... |
1811-1895 | 1.93e-22 | |||
PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. : Pssm-ID: 238492 [Multi-domain] Cd Length: 82 Bit Score: 93.02 E-value: 1.93e-22
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PDZ_signaling | cd00992 | PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. ... |
1688-1773 | 2.17e-20 | |||
PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. : Pssm-ID: 238492 [Multi-domain] Cd Length: 82 Bit Score: 86.85 E-value: 2.17e-20
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PDZ_signaling | cd00992 | PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. ... |
246-325 | 2.90e-20 | |||
PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. : Pssm-ID: 238492 [Multi-domain] Cd Length: 82 Bit Score: 86.47 E-value: 2.90e-20
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PDZ_signaling | cd00992 | PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. ... |
1066-1157 | 6.44e-20 | |||
PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. : Pssm-ID: 238492 [Multi-domain] Cd Length: 82 Bit Score: 85.70 E-value: 6.44e-20
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PDZ_signaling | cd00992 | PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. ... |
135-218 | 4.96e-18 | |||
PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. : Pssm-ID: 238492 [Multi-domain] Cd Length: 82 Bit Score: 80.30 E-value: 4.96e-18
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PDZ_signaling | cd00992 | PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. ... |
1545-1625 | 5.74e-18 | |||
PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. : Pssm-ID: 238492 [Multi-domain] Cd Length: 82 Bit Score: 79.92 E-value: 5.74e-18
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PDZ | smart00228 | Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF ... |
1434-1533 | 8.29e-18 | |||
Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. : Pssm-ID: 214570 [Multi-domain] Cd Length: 85 Bit Score: 79.73 E-value: 8.29e-18
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PDZ_signaling | cd00992 | PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. ... |
366-450 | 1.26e-17 | |||
PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. : Pssm-ID: 238492 [Multi-domain] Cd Length: 82 Bit Score: 79.15 E-value: 1.26e-17
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PDZ | smart00228 | Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF ... |
1236-1321 | 4.47e-17 | |||
Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. : Pssm-ID: 214570 [Multi-domain] Cd Length: 85 Bit Score: 77.80 E-value: 4.47e-17
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L27_2 super family | cl23017 | L27_2; The L27_2 domain is a protein-protein interaction domain capable of organising scaffold ... |
8-65 | 2.64e-15 | |||
L27_2; The L27_2 domain is a protein-protein interaction domain capable of organising scaffold proteins into supramolecular assemblies by formation of heteromeric L27_2 domain complexes. L27_2 domain-mediated protein assemblies have been shown to play essential roles in cellular processes including asymmetric cell division, establishment and maintenance of cell polarity, and clustering of receptors and ion channels. Members of this family form specific heterotetrameric complexes, in which each domain contains three alpha-helices. The two N-terminal helices of each L27_2 domain pack together to form a tight, four-helix bundle in the heterodimer, whilst the third helix of each L27_2 domain forms another four-helix bundle that assembles the two units of the heterodimer into a tetramer. The actual alignment was detected with superfamily member pfam09045: Pssm-ID: 312549 Cd Length: 58 Bit Score: 71.62 E-value: 2.64e-15
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PDZ | smart00228 | Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF ... |
683-772 | 2.71e-13 | |||
Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. : Pssm-ID: 214570 [Multi-domain] Cd Length: 85 Bit Score: 67.02 E-value: 2.71e-13
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PDZ_signaling | cd00992 | PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. ... |
570-634 | 7.08e-11 | |||
PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. : Pssm-ID: 238492 [Multi-domain] Cd Length: 82 Bit Score: 59.89 E-value: 7.08e-11
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CtpA super family | cl34043 | C-terminal processing protease CtpA/Prc, contains a PDZ domain [Posttranslational modification, ... |
391-513 | 2.26e-07 | |||
C-terminal processing protease CtpA/Prc, contains a PDZ domain [Posttranslational modification, protein turnover, chaperones]; The actual alignment was detected with superfamily member COG0793: Pssm-ID: 223864 [Multi-domain] Cd Length: 406 Bit Score: 55.42 E-value: 2.26e-07
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Name | Accession | Description | Interval | E-value | |||
PDZ_signaling | cd00992 | PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. ... |
1811-1895 | 1.93e-22 | |||
PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Pssm-ID: 238492 [Multi-domain] Cd Length: 82 Bit Score: 93.02 E-value: 1.93e-22
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PDZ | smart00228 | Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF ... |
1811-1895 | 1.04e-20 | |||
Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Pssm-ID: 214570 [Multi-domain] Cd Length: 85 Bit Score: 88.20 E-value: 1.04e-20
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PDZ_signaling | cd00992 | PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. ... |
1688-1773 | 2.17e-20 | |||
PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Pssm-ID: 238492 [Multi-domain] Cd Length: 82 Bit Score: 86.85 E-value: 2.17e-20
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PDZ_signaling | cd00992 | PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. ... |
246-325 | 2.90e-20 | |||
PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Pssm-ID: 238492 [Multi-domain] Cd Length: 82 Bit Score: 86.47 E-value: 2.90e-20
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PDZ_signaling | cd00992 | PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. ... |
1066-1157 | 6.44e-20 | |||
PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Pssm-ID: 238492 [Multi-domain] Cd Length: 82 Bit Score: 85.70 E-value: 6.44e-20
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PDZ | smart00228 | Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF ... |
248-328 | 6.60e-19 | |||
Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Pssm-ID: 214570 [Multi-domain] Cd Length: 85 Bit Score: 82.81 E-value: 6.60e-19
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PDZ_signaling | cd00992 | PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. ... |
135-218 | 4.96e-18 | |||
PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Pssm-ID: 238492 [Multi-domain] Cd Length: 82 Bit Score: 80.30 E-value: 4.96e-18
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PDZ_signaling | cd00992 | PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. ... |
1545-1625 | 5.74e-18 | |||
PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Pssm-ID: 238492 [Multi-domain] Cd Length: 82 Bit Score: 79.92 E-value: 5.74e-18
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PDZ | smart00228 | Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF ... |
1434-1533 | 8.29e-18 | |||
Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Pssm-ID: 214570 [Multi-domain] Cd Length: 85 Bit Score: 79.73 E-value: 8.29e-18
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PDZ_signaling | cd00992 | PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. ... |
366-450 | 1.26e-17 | |||
PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Pssm-ID: 238492 [Multi-domain] Cd Length: 82 Bit Score: 79.15 E-value: 1.26e-17
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PDZ | smart00228 | Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF ... |
1236-1321 | 4.47e-17 | |||
Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Pssm-ID: 214570 [Multi-domain] Cd Length: 85 Bit Score: 77.80 E-value: 4.47e-17
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PDZ | smart00228 | Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF ... |
362-453 | 5.70e-17 | |||
Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Pssm-ID: 214570 [Multi-domain] Cd Length: 85 Bit Score: 77.42 E-value: 5.70e-17
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PDZ_signaling | cd00992 | PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. ... |
1438-1530 | 5.71e-17 | |||
PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Pssm-ID: 238492 [Multi-domain] Cd Length: 82 Bit Score: 77.22 E-value: 5.71e-17
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PDZ | smart00228 | Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF ... |
1066-1157 | 8.02e-17 | |||
Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Pssm-ID: 214570 [Multi-domain] Cd Length: 85 Bit Score: 77.03 E-value: 8.02e-17
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PDZ | pfam00595 | PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. |
1814-1895 | 7.70e-16 | |||
PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. Pssm-ID: 395476 [Multi-domain] Cd Length: 81 Bit Score: 73.85 E-value: 7.70e-16
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PDZ_signaling | cd00992 | PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. ... |
1237-1317 | 8.57e-16 | |||
PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Pssm-ID: 238492 [Multi-domain] Cd Length: 82 Bit Score: 73.76 E-value: 8.57e-16
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PDZ | smart00228 | Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF ... |
1544-1627 | 9.07e-16 | |||
Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Pssm-ID: 214570 [Multi-domain] Cd Length: 85 Bit Score: 73.95 E-value: 9.07e-16
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PDZ | smart00228 | Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF ... |
1687-1775 | 1.03e-15 | |||
Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Pssm-ID: 214570 [Multi-domain] Cd Length: 85 Bit Score: 73.95 E-value: 1.03e-15
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L27_2 | pfam09045 | L27_2; The L27_2 domain is a protein-protein interaction domain capable of organising scaffold ... |
8-65 | 2.64e-15 | |||
L27_2; The L27_2 domain is a protein-protein interaction domain capable of organising scaffold proteins into supramolecular assemblies by formation of heteromeric L27_2 domain complexes. L27_2 domain-mediated protein assemblies have been shown to play essential roles in cellular processes including asymmetric cell division, establishment and maintenance of cell polarity, and clustering of receptors and ion channels. Members of this family form specific heterotetrameric complexes, in which each domain contains three alpha-helices. The two N-terminal helices of each L27_2 domain pack together to form a tight, four-helix bundle in the heterodimer, whilst the third helix of each L27_2 domain forms another four-helix bundle that assembles the two units of the heterodimer into a tetramer. Pssm-ID: 312549 Cd Length: 58 Bit Score: 71.62 E-value: 2.64e-15
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PDZ | smart00228 | Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF ... |
131-221 | 1.35e-14 | |||
Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Pssm-ID: 214570 [Multi-domain] Cd Length: 85 Bit Score: 70.49 E-value: 1.35e-14
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PDZ | pfam00595 | PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. |
1437-1530 | 1.64e-13 | |||
PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. Pssm-ID: 395476 [Multi-domain] Cd Length: 81 Bit Score: 67.31 E-value: 1.64e-13
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PDZ | smart00228 | Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF ... |
683-772 | 2.71e-13 | |||
Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Pssm-ID: 214570 [Multi-domain] Cd Length: 85 Bit Score: 67.02 E-value: 2.71e-13
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PDZ_signaling | cd00992 | PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. ... |
684-765 | 3.61e-13 | |||
PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Pssm-ID: 238492 [Multi-domain] Cd Length: 82 Bit Score: 66.44 E-value: 3.61e-13
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PDZ | pfam00595 | PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. |
366-449 | 6.30e-13 | |||
PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. Pssm-ID: 395476 [Multi-domain] Cd Length: 81 Bit Score: 65.77 E-value: 6.30e-13
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PDZ | pfam00595 | PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. |
1548-1625 | 7.97e-13 | |||
PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. Pssm-ID: 395476 [Multi-domain] Cd Length: 81 Bit Score: 65.38 E-value: 7.97e-13
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PDZ | pfam00595 | PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. |
1069-1157 | 9.78e-13 | |||
PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. Pssm-ID: 395476 [Multi-domain] Cd Length: 81 Bit Score: 65.38 E-value: 9.78e-13
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PDZ | pfam00595 | PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. |
1690-1772 | 5.44e-12 | |||
PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. Pssm-ID: 395476 [Multi-domain] Cd Length: 81 Bit Score: 63.07 E-value: 5.44e-12
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PDZ | pfam00595 | PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. |
135-218 | 8.61e-12 | |||
PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. Pssm-ID: 395476 [Multi-domain] Cd Length: 81 Bit Score: 62.68 E-value: 8.61e-12
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PDZ_signaling | cd00992 | PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. ... |
570-634 | 7.08e-11 | |||
PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Pssm-ID: 238492 [Multi-domain] Cd Length: 82 Bit Score: 59.89 E-value: 7.08e-11
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PDZ | pfam00595 | PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. |
255-325 | 9.05e-11 | |||
PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. Pssm-ID: 395476 [Multi-domain] Cd Length: 81 Bit Score: 59.60 E-value: 9.05e-11
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PDZ | pfam00595 | PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. |
1240-1317 | 1.10e-10 | |||
PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. Pssm-ID: 395476 [Multi-domain] Cd Length: 81 Bit Score: 59.22 E-value: 1.10e-10
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PDZ | smart00228 | Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF ... |
563-638 | 2.63e-09 | |||
Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Pssm-ID: 214570 [Multi-domain] Cd Length: 85 Bit Score: 55.46 E-value: 2.63e-09
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CtpA | COG0793 | C-terminal processing protease CtpA/Prc, contains a PDZ domain [Posttranslational modification, ... |
391-513 | 2.26e-07 | |||
C-terminal processing protease CtpA/Prc, contains a PDZ domain [Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 223864 [Multi-domain] Cd Length: 406 Bit Score: 55.42 E-value: 2.26e-07
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CtpA | COG0793 | C-terminal processing protease CtpA/Prc, contains a PDZ domain [Posttranslational modification, ... |
1533-1627 | 1.36e-06 | |||
C-terminal processing protease CtpA/Prc, contains a PDZ domain [Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 223864 [Multi-domain] Cd Length: 406 Bit Score: 52.72 E-value: 1.36e-06
|
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L27 | smart00569 | domain in receptor targeting proteins Lin-2 and Lin-7; |
11-68 | 3.71e-06 | |||
domain in receptor targeting proteins Lin-2 and Lin-7; Pssm-ID: 197794 Cd Length: 53 Bit Score: 45.58 E-value: 3.71e-06
|
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CtpA | COG0793 | C-terminal processing protease CtpA/Prc, contains a PDZ domain [Posttranslational modification, ... |
256-330 | 6.35e-06 | |||
C-terminal processing protease CtpA/Prc, contains a PDZ domain [Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 223864 [Multi-domain] Cd Length: 406 Bit Score: 50.79 E-value: 6.35e-06
|
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PDZ | pfam00595 | PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. |
693-769 | 2.41e-05 | |||
PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. Pssm-ID: 395476 [Multi-domain] Cd Length: 81 Bit Score: 44.19 E-value: 2.41e-05
|
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PLN00049 | PLN00049 | carboxyl-terminal processing protease; Provisional |
255-358 | 6.62e-05 | |||
carboxyl-terminal processing protease; Provisional Pssm-ID: 177681 [Multi-domain] Cd Length: 389 Bit Score: 47.42 E-value: 6.62e-05
|
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degP_htrA_DO | TIGR02037 | periplasmic serine protease, Do/DeqQ family; This family consists of a set proteins various ... |
1478-1605 | 9.10e-05 | |||
periplasmic serine protease, Do/DeqQ family; This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides] Pssm-ID: 273938 [Multi-domain] Cd Length: 428 Bit Score: 47.22 E-value: 9.10e-05
|
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CtpA | COG0793 | C-terminal processing protease CtpA/Prc, contains a PDZ domain [Posttranslational modification, ... |
1434-1533 | 1.74e-04 | |||
C-terminal processing protease CtpA/Prc, contains a PDZ domain [Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 223864 [Multi-domain] Cd Length: 406 Bit Score: 46.17 E-value: 1.74e-04
|
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PLN00049 | PLN00049 | carboxyl-terminal processing protease; Provisional |
381-455 | 1.25e-03 | |||
carboxyl-terminal processing protease; Provisional Pssm-ID: 177681 [Multi-domain] Cd Length: 389 Bit Score: 43.19 E-value: 1.25e-03
|
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CtpA | COG0793 | C-terminal processing protease CtpA/Prc, contains a PDZ domain [Posttranslational modification, ... |
1840-1895 | 1.43e-03 | |||
C-terminal processing protease CtpA/Prc, contains a PDZ domain [Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 223864 [Multi-domain] Cd Length: 406 Bit Score: 43.09 E-value: 1.43e-03
|
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Name | Accession | Description | Interval | E-value | ||||
PDZ_signaling | cd00992 | PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. ... |
1811-1895 | 1.93e-22 | ||||
PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Pssm-ID: 238492 [Multi-domain] Cd Length: 82 Bit Score: 93.02 E-value: 1.93e-22
|
||||||||
PDZ | smart00228 | Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF ... |
1811-1895 | 1.04e-20 | ||||
Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Pssm-ID: 214570 [Multi-domain] Cd Length: 85 Bit Score: 88.20 E-value: 1.04e-20
|
||||||||
PDZ_signaling | cd00992 | PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. ... |
1688-1773 | 2.17e-20 | ||||
PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Pssm-ID: 238492 [Multi-domain] Cd Length: 82 Bit Score: 86.85 E-value: 2.17e-20
|
||||||||
PDZ_signaling | cd00992 | PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. ... |
246-325 | 2.90e-20 | ||||
PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Pssm-ID: 238492 [Multi-domain] Cd Length: 82 Bit Score: 86.47 E-value: 2.90e-20
|
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PDZ_signaling | cd00992 | PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. ... |
1066-1157 | 6.44e-20 | ||||
PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Pssm-ID: 238492 [Multi-domain] Cd Length: 82 Bit Score: 85.70 E-value: 6.44e-20
|
||||||||
PDZ | smart00228 | Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF ... |
248-328 | 6.60e-19 | ||||
Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Pssm-ID: 214570 [Multi-domain] Cd Length: 85 Bit Score: 82.81 E-value: 6.60e-19
|
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PDZ_signaling | cd00992 | PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. ... |
135-218 | 4.96e-18 | ||||
PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Pssm-ID: 238492 [Multi-domain] Cd Length: 82 Bit Score: 80.30 E-value: 4.96e-18
|
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PDZ_signaling | cd00992 | PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. ... |
1545-1625 | 5.74e-18 | ||||
PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Pssm-ID: 238492 [Multi-domain] Cd Length: 82 Bit Score: 79.92 E-value: 5.74e-18
|
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PDZ | smart00228 | Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF ... |
1434-1533 | 8.29e-18 | ||||
Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Pssm-ID: 214570 [Multi-domain] Cd Length: 85 Bit Score: 79.73 E-value: 8.29e-18
|
||||||||
PDZ_signaling | cd00992 | PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. ... |
366-450 | 1.26e-17 | ||||
PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Pssm-ID: 238492 [Multi-domain] Cd Length: 82 Bit Score: 79.15 E-value: 1.26e-17
|
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PDZ | smart00228 | Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF ... |
1236-1321 | 4.47e-17 | ||||
Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Pssm-ID: 214570 [Multi-domain] Cd Length: 85 Bit Score: 77.80 E-value: 4.47e-17
|
||||||||
PDZ | smart00228 | Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF ... |
362-453 | 5.70e-17 | ||||
Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Pssm-ID: 214570 [Multi-domain] Cd Length: 85 Bit Score: 77.42 E-value: 5.70e-17
|
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PDZ_signaling | cd00992 | PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. ... |
1438-1530 | 5.71e-17 | ||||
PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Pssm-ID: 238492 [Multi-domain] Cd Length: 82 Bit Score: 77.22 E-value: 5.71e-17
|
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PDZ | smart00228 | Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF ... |
1066-1157 | 8.02e-17 | ||||
Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Pssm-ID: 214570 [Multi-domain] Cd Length: 85 Bit Score: 77.03 E-value: 8.02e-17
|
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PDZ | pfam00595 | PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. |
1814-1895 | 7.70e-16 | ||||
PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. Pssm-ID: 395476 [Multi-domain] Cd Length: 81 Bit Score: 73.85 E-value: 7.70e-16
|
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PDZ_signaling | cd00992 | PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. ... |
1237-1317 | 8.57e-16 | ||||
PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Pssm-ID: 238492 [Multi-domain] Cd Length: 82 Bit Score: 73.76 E-value: 8.57e-16
|
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PDZ | smart00228 | Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF ... |
1544-1627 | 9.07e-16 | ||||
Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Pssm-ID: 214570 [Multi-domain] Cd Length: 85 Bit Score: 73.95 E-value: 9.07e-16
|
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PDZ | smart00228 | Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF ... |
1687-1775 | 1.03e-15 | ||||
Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Pssm-ID: 214570 [Multi-domain] Cd Length: 85 Bit Score: 73.95 E-value: 1.03e-15
|
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L27_2 | pfam09045 | L27_2; The L27_2 domain is a protein-protein interaction domain capable of organising scaffold ... |
8-65 | 2.64e-15 | ||||
L27_2; The L27_2 domain is a protein-protein interaction domain capable of organising scaffold proteins into supramolecular assemblies by formation of heteromeric L27_2 domain complexes. L27_2 domain-mediated protein assemblies have been shown to play essential roles in cellular processes including asymmetric cell division, establishment and maintenance of cell polarity, and clustering of receptors and ion channels. Members of this family form specific heterotetrameric complexes, in which each domain contains three alpha-helices. The two N-terminal helices of each L27_2 domain pack together to form a tight, four-helix bundle in the heterodimer, whilst the third helix of each L27_2 domain forms another four-helix bundle that assembles the two units of the heterodimer into a tetramer. Pssm-ID: 312549 Cd Length: 58 Bit Score: 71.62 E-value: 2.64e-15
|
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PDZ | smart00228 | Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF ... |
131-221 | 1.35e-14 | ||||
Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Pssm-ID: 214570 [Multi-domain] Cd Length: 85 Bit Score: 70.49 E-value: 1.35e-14
|
||||||||
PDZ | pfam00595 | PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. |
1437-1530 | 1.64e-13 | ||||
PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. Pssm-ID: 395476 [Multi-domain] Cd Length: 81 Bit Score: 67.31 E-value: 1.64e-13
|
||||||||
PDZ | smart00228 | Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF ... |
683-772 | 2.71e-13 | ||||
Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Pssm-ID: 214570 [Multi-domain] Cd Length: 85 Bit Score: 67.02 E-value: 2.71e-13
|
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PDZ_signaling | cd00992 | PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. ... |
684-765 | 3.61e-13 | ||||
PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Pssm-ID: 238492 [Multi-domain] Cd Length: 82 Bit Score: 66.44 E-value: 3.61e-13
|
||||||||
PDZ | pfam00595 | PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. |
366-449 | 6.30e-13 | ||||
PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. Pssm-ID: 395476 [Multi-domain] Cd Length: 81 Bit Score: 65.77 E-value: 6.30e-13
|
||||||||
PDZ | pfam00595 | PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. |
1548-1625 | 7.97e-13 | ||||
PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. Pssm-ID: 395476 [Multi-domain] Cd Length: 81 Bit Score: 65.38 E-value: 7.97e-13
|
||||||||
PDZ | pfam00595 | PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. |
1069-1157 | 9.78e-13 | ||||
PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. Pssm-ID: 395476 [Multi-domain] Cd Length: 81 Bit Score: 65.38 E-value: 9.78e-13
|
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PDZ | cd00136 | PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). ... |
256-324 | 1.56e-12 | ||||
PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Pssm-ID: 238080 [Multi-domain] Cd Length: 70 Bit Score: 64.25 E-value: 1.56e-12
|
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PDZ | pfam00595 | PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. |
1690-1772 | 5.44e-12 | ||||
PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. Pssm-ID: 395476 [Multi-domain] Cd Length: 81 Bit Score: 63.07 E-value: 5.44e-12
|
||||||||
PDZ | pfam00595 | PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. |
135-218 | 8.61e-12 | ||||
PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. Pssm-ID: 395476 [Multi-domain] Cd Length: 81 Bit Score: 62.68 E-value: 8.61e-12
|
||||||||
PDZ | cd00136 | PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). ... |
1822-1895 | 8.86e-12 | ||||
PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Pssm-ID: 238080 [Multi-domain] Cd Length: 70 Bit Score: 61.94 E-value: 8.86e-12
|
||||||||
PDZ_signaling | cd00992 | PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. ... |
570-634 | 7.08e-11 | ||||
PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Pssm-ID: 238492 [Multi-domain] Cd Length: 82 Bit Score: 59.89 E-value: 7.08e-11
|
||||||||
PDZ | pfam00595 | PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. |
255-325 | 9.05e-11 | ||||
PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. Pssm-ID: 395476 [Multi-domain] Cd Length: 81 Bit Score: 59.60 E-value: 9.05e-11
|
||||||||
PDZ | pfam00595 | PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. |
1240-1317 | 1.10e-10 | ||||
PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. Pssm-ID: 395476 [Multi-domain] Cd Length: 81 Bit Score: 59.22 E-value: 1.10e-10
|
||||||||
PDZ | cd00136 | PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). ... |
375-450 | 1.40e-09 | ||||
PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Pssm-ID: 238080 [Multi-domain] Cd Length: 70 Bit Score: 55.77 E-value: 1.40e-09
|
||||||||
PDZ | smart00228 | Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF ... |
563-638 | 2.63e-09 | ||||
Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Pssm-ID: 214570 [Multi-domain] Cd Length: 85 Bit Score: 55.46 E-value: 2.63e-09
|
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PDZ_CTP_protease | cd00988 | PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in ... |
255-335 | 2.46e-08 | ||||
PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Pssm-ID: 238488 [Multi-domain] Cd Length: 85 Bit Score: 53.00 E-value: 2.46e-08
|
||||||||
PDZ | cd00136 | PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). ... |
1556-1625 | 3.57e-08 | ||||
PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Pssm-ID: 238080 [Multi-domain] Cd Length: 70 Bit Score: 51.92 E-value: 3.57e-08
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PDZ | cd00136 | PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). ... |
1701-1773 | 8.04e-08 | ||||
PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Pssm-ID: 238080 [Multi-domain] Cd Length: 70 Bit Score: 50.77 E-value: 8.04e-08
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PDZ | cd00136 | PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). ... |
1445-1531 | 1.64e-07 | ||||
PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Pssm-ID: 238080 [Multi-domain] Cd Length: 70 Bit Score: 50.00 E-value: 1.64e-07
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PDZ | cd00136 | PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). ... |
1078-1156 | 1.85e-07 | ||||
PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Pssm-ID: 238080 [Multi-domain] Cd Length: 70 Bit Score: 50.00 E-value: 1.85e-07
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CtpA | COG0793 | C-terminal processing protease CtpA/Prc, contains a PDZ domain [Posttranslational modification, ... |
391-513 | 2.26e-07 | ||||
C-terminal processing protease CtpA/Prc, contains a PDZ domain [Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 223864 [Multi-domain] Cd Length: 406 Bit Score: 55.42 E-value: 2.26e-07
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PDZ_CTP_protease | cd00988 | PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in ... |
1718-1769 | 5.50e-07 | ||||
PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Pssm-ID: 238488 [Multi-domain] Cd Length: 85 Bit Score: 49.15 E-value: 5.50e-07
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PDZ_6 | pfam17820 | PDZ domain; This entry represents the PDZ domain from a wide variety of proteins. |
396-451 | 1.08e-06 | ||||
PDZ domain; This entry represents the PDZ domain from a wide variety of proteins. Pssm-ID: 436067 [Multi-domain] Cd Length: 54 Bit Score: 47.14 E-value: 1.08e-06
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PDZ_CTP_protease | cd00988 | PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in ... |
394-451 | 1.15e-06 | ||||
PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Pssm-ID: 238488 [Multi-domain] Cd Length: 85 Bit Score: 47.99 E-value: 1.15e-06
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CtpA | COG0793 | C-terminal processing protease CtpA/Prc, contains a PDZ domain [Posttranslational modification, ... |
1533-1627 | 1.36e-06 | ||||
C-terminal processing protease CtpA/Prc, contains a PDZ domain [Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 223864 [Multi-domain] Cd Length: 406 Bit Score: 52.72 E-value: 1.36e-06
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PDZ_CTP_protease | cd00988 | PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in ... |
1557-1627 | 3.59e-06 | ||||
PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Pssm-ID: 238488 [Multi-domain] Cd Length: 85 Bit Score: 46.84 E-value: 3.59e-06
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L27 | smart00569 | domain in receptor targeting proteins Lin-2 and Lin-7; |
11-68 | 3.71e-06 | ||||
domain in receptor targeting proteins Lin-2 and Lin-7; Pssm-ID: 197794 Cd Length: 53 Bit Score: 45.58 E-value: 3.71e-06
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PDZ_6 | pfam17820 | PDZ domain; This entry represents the PDZ domain from a wide variety of proteins. |
271-326 | 4.10e-06 | ||||
PDZ domain; This entry represents the PDZ domain from a wide variety of proteins. Pssm-ID: 436067 [Multi-domain] Cd Length: 54 Bit Score: 45.60 E-value: 4.10e-06
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CtpA | COG0793 | C-terminal processing protease CtpA/Prc, contains a PDZ domain [Posttranslational modification, ... |
256-330 | 6.35e-06 | ||||
C-terminal processing protease CtpA/Prc, contains a PDZ domain [Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 223864 [Multi-domain] Cd Length: 406 Bit Score: 50.79 E-value: 6.35e-06
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PDZ | cd00136 | PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). ... |
694-769 | 6.73e-06 | ||||
PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Pssm-ID: 238080 [Multi-domain] Cd Length: 70 Bit Score: 45.37 E-value: 6.73e-06
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PDZ_CTP_protease | cd00988 | PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in ... |
1840-1895 | 6.79e-06 | ||||
PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Pssm-ID: 238488 [Multi-domain] Cd Length: 85 Bit Score: 46.06 E-value: 6.79e-06
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PDZ_metalloprotease | cd00989 | PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or ... |
384-453 | 6.95e-06 | ||||
PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Pssm-ID: 238489 [Multi-domain] Cd Length: 79 Bit Score: 45.69 E-value: 6.95e-06
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PDZ | cd00136 | PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). ... |
143-211 | 1.61e-05 | ||||
PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Pssm-ID: 238080 [Multi-domain] Cd Length: 70 Bit Score: 44.22 E-value: 1.61e-05
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PDZ | cd00136 | PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). ... |
1247-1319 | 2.32e-05 | ||||
PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Pssm-ID: 238080 [Multi-domain] Cd Length: 70 Bit Score: 43.83 E-value: 2.32e-05
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PDZ | pfam00595 | PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. |
693-769 | 2.41e-05 | ||||
PDZ domain (Also known as DHR or GLGF); PDZ domains are found in diverse signaling proteins. Pssm-ID: 395476 [Multi-domain] Cd Length: 81 Bit Score: 44.19 E-value: 2.41e-05
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PDZ_serine_protease | cd00987 | PDZ domain of trypsin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins ... |
393-451 | 4.02e-05 | ||||
PDZ domain of trypsin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Pssm-ID: 238487 [Multi-domain] Cd Length: 90 Bit Score: 43.78 E-value: 4.02e-05
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PDZ_serine_protease | cd00987 | PDZ domain of trypsin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins ... |
266-327 | 5.94e-05 | ||||
PDZ domain of trypsin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Pssm-ID: 238487 [Multi-domain] Cd Length: 90 Bit Score: 43.40 E-value: 5.94e-05
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PLN00049 | PLN00049 | carboxyl-terminal processing protease; Provisional |
255-358 | 6.62e-05 | ||||
carboxyl-terminal processing protease; Provisional Pssm-ID: 177681 [Multi-domain] Cd Length: 389 Bit Score: 47.42 E-value: 6.62e-05
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PDZ_CTP_protease | cd00988 | PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in ... |
1476-1534 | 6.83e-05 | ||||
PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Pssm-ID: 238488 [Multi-domain] Cd Length: 85 Bit Score: 42.98 E-value: 6.83e-05
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degP_htrA_DO | TIGR02037 | periplasmic serine protease, Do/DeqQ family; This family consists of a set proteins various ... |
1478-1605 | 9.10e-05 | ||||
periplasmic serine protease, Do/DeqQ family; This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides] Pssm-ID: 273938 [Multi-domain] Cd Length: 428 Bit Score: 47.22 E-value: 9.10e-05
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PDZ_metalloprotease | cd00989 | PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or ... |
1716-1769 | 1.39e-04 | ||||
PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Pssm-ID: 238489 [Multi-domain] Cd Length: 79 Bit Score: 41.84 E-value: 1.39e-04
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degP_htrA_DO | TIGR02037 | periplasmic serine protease, Do/DeqQ family; This family consists of a set proteins various ... |
121-327 | 1.42e-04 | ||||
periplasmic serine protease, Do/DeqQ family; This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides] Pssm-ID: 273938 [Multi-domain] Cd Length: 428 Bit Score: 46.45 E-value: 1.42e-04
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CtpA | COG0793 | C-terminal processing protease CtpA/Prc, contains a PDZ domain [Posttranslational modification, ... |
1434-1533 | 1.74e-04 | ||||
C-terminal processing protease CtpA/Prc, contains a PDZ domain [Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 223864 [Multi-domain] Cd Length: 406 Bit Score: 46.17 E-value: 1.74e-04
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PDZ_CTP_protease | cd00988 | PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in ... |
569-625 | 2.34e-04 | ||||
PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Pssm-ID: 238488 [Multi-domain] Cd Length: 85 Bit Score: 41.44 E-value: 2.34e-04
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PDZ_CTP_protease | cd00988 | PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in ... |
1100-1152 | 3.30e-04 | ||||
PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Pssm-ID: 238488 [Multi-domain] Cd Length: 85 Bit Score: 41.06 E-value: 3.30e-04
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PDZ_6 | pfam17820 | PDZ domain; This entry represents the PDZ domain from a wide variety of proteins. |
163-219 | 4.32e-04 | ||||
PDZ domain; This entry represents the PDZ domain from a wide variety of proteins. Pssm-ID: 436067 [Multi-domain] Cd Length: 54 Bit Score: 39.82 E-value: 4.32e-04
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PDZ_serine_protease | cd00987 | PDZ domain of trypsin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins ... |
1476-1533 | 5.46e-04 | ||||
PDZ domain of trypsin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Pssm-ID: 238487 [Multi-domain] Cd Length: 90 Bit Score: 40.70 E-value: 5.46e-04
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PDZ_serine_protease | cd00987 | PDZ domain of trypsin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins ... |
1079-1157 | 5.96e-04 | ||||
PDZ domain of trypsin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Pssm-ID: 238487 [Multi-domain] Cd Length: 90 Bit Score: 40.70 E-value: 5.96e-04
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PDZ_metalloprotease | cd00989 | PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or ... |
1822-1895 | 1.03e-03 | ||||
PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Pssm-ID: 238489 [Multi-domain] Cd Length: 79 Bit Score: 39.52 E-value: 1.03e-03
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PLN00049 | PLN00049 | carboxyl-terminal processing protease; Provisional |
381-455 | 1.25e-03 | ||||
carboxyl-terminal processing protease; Provisional Pssm-ID: 177681 [Multi-domain] Cd Length: 389 Bit Score: 43.19 E-value: 1.25e-03
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CtpA | COG0793 | C-terminal processing protease CtpA/Prc, contains a PDZ domain [Posttranslational modification, ... |
1840-1895 | 1.43e-03 | ||||
C-terminal processing protease CtpA/Prc, contains a PDZ domain [Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 223864 [Multi-domain] Cd Length: 406 Bit Score: 43.09 E-value: 1.43e-03
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PDZ_6 | pfam17820 | PDZ domain; This entry represents the PDZ domain from a wide variety of proteins. |
1841-1894 | 1.77e-03 | ||||
PDZ domain; This entry represents the PDZ domain from a wide variety of proteins. Pssm-ID: 436067 [Multi-domain] Cd Length: 54 Bit Score: 38.28 E-value: 1.77e-03
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PDZ_metalloprotease | cd00989 | PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or ... |
256-327 | 2.51e-03 | ||||
PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Pssm-ID: 238489 [Multi-domain] Cd Length: 79 Bit Score: 38.37 E-value: 2.51e-03
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PDZ_6 | pfam17820 | PDZ domain; This entry represents the PDZ domain from a wide variety of proteins. |
1477-1532 | 3.10e-03 | ||||
PDZ domain; This entry represents the PDZ domain from a wide variety of proteins. Pssm-ID: 436067 [Multi-domain] Cd Length: 54 Bit Score: 37.51 E-value: 3.10e-03
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PDZ_CTP_protease | cd00988 | PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in ... |
1248-1322 | 3.63e-03 | ||||
PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Pssm-ID: 238488 [Multi-domain] Cd Length: 85 Bit Score: 38.36 E-value: 3.63e-03
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PDZ_6 | pfam17820 | PDZ domain; This entry represents the PDZ domain from a wide variety of proteins. |
1719-1774 | 4.42e-03 | ||||
PDZ domain; This entry represents the PDZ domain from a wide variety of proteins. Pssm-ID: 436067 [Multi-domain] Cd Length: 54 Bit Score: 37.12 E-value: 4.42e-03
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degP_htrA_DO | TIGR02037 | periplasmic serine protease, Do/DeqQ family; This family consists of a set proteins various ... |
1569-1764 | 4.89e-03 | ||||
periplasmic serine protease, Do/DeqQ family; This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides] Pssm-ID: 273938 [Multi-domain] Cd Length: 428 Bit Score: 41.44 E-value: 4.89e-03
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PDZ_6 | pfam17820 | PDZ domain; This entry represents the PDZ domain from a wide variety of proteins. |
715-769 | 5.02e-03 | ||||
PDZ domain; This entry represents the PDZ domain from a wide variety of proteins. Pssm-ID: 436067 [Multi-domain] Cd Length: 54 Bit Score: 36.74 E-value: 5.02e-03
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