|
Name |
Accession |
Description |
Interval |
E-value |
| GOLGA2L5 |
pfam15070 |
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein ... |
239-490 |
7.47e-43 |
|
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein family remains unknown. This family of proteins is thought to be found in the Golgi apparatus of eukaryotes.
Pssm-ID: 464485 [Multi-domain] Cd Length: 521 Bit Score: 162.16 E-value: 7.47e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 239 QLKESLKEVQLERDEYAEHLKGERARWQQRMRKMSQEVCSLKKEKKHDKYRVEKLERSLSKLKHQMAEPLPPEPPAVP-- 316
Cdd:pfam15070 1 QLMESLKQLQTERDQYAENLKEEGAVWQQKMQQLSEQVRTLREEKERSVSQVQELETSLAELKNQAAVPPAEEEQPPAgp 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 317 SEVE------LQHLRKELERVAGELQAQVEYNQRISLLNEGQKERLREQEERLQEQQERLPEQEERL------------- 377
Cdd:pfam15070 81 SEEEqrlqeeAEQLQKELEALAGQLQAQVQDNEQLSRLNQEQEQRLLELERAAERWGEQAEDRKQILedmqsdratisra 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 378 --------QQLAEPQNSFKELNNEN---KSVLQLEQQVK--------ELQEKLG-------------------------- 412
Cdd:pfam15070 161 lsqnrelkEQLAELQNGFVKLTNENmelTSALQSEQHVKkelakklgQLQEELGelketlelksqeaqslqeqrdqylah 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 413 -----------------------------------------------------KERLEAASQQKQQLTAQLSLMALPGEG 439
Cdd:pfam15070 241 lqqyvaayqqlasekeelhkqyllqtqlmdrlqheevqgkvaaemarqelqetQERLEALTQQNQQLQAQLSLLANPGEG 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1370466511 440 DGgghLDSE--GEEAPRPIPSIPQDLESREAMVAFFKSAGASAQEKQAQLQEQ 490
Cdd:pfam15070 321 DG---LESEeeEEEAPRPSLSIPEDFESREAMVAFFNSALAQAEEERAELRRQ 370
|
|
| GM130_C |
pfam19046 |
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 ... |
630-669 |
9.20e-19 |
|
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 protein that is bound by the GRASP65 PDZ domain pfam04495.
Pssm-ID: 465957 Cd Length: 46 Bit Score: 80.12 E-value: 9.20e-19
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1370466511 630 SPHDNPTAQPIV------QDHQEHPGLGSNCCVPFFCWAWLPRRRR 669
Cdd:pfam19046 1 SPPENPTAQQIMqllpeiQNPQEHPGLGSNPCIPFFYRADENDEVK 46
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
107-419 |
1.17e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.96 E-value: 1.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 107 QLKNTIKSLKQQNKQVEHQLEEEKKANNEKQKAERELEVQIQRLNIQKGKLNTDLYHTKRSLRYFEEESKDLAVRLQHSL 186
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 187 QRKGELERALSAVTATQKKKAERQfssrskARMEWKLEQSMREQALLKAQLTQLKESLKEVQLERDEYAEHLKgerARWQ 266
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEEL------EELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE---ELAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 267 QRMRKMSQEVcSLKKEKKHDKYRVEKLERSLSKLKHQMAEPLPPEPPAVPSEVELQhlRKELERVAGELQAQVEYNQRIS 346
Cdd:COG1196 387 ELLEALRAAA-ELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE--EALEEAAEEEAELEEEEEALLE 463
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1370466511 347 LLNEGQKERLREQEerlqeqqerlpEQEERLQQLAEPQNSFKELNNENKSVLQLEQQVKELQEKLGKERLEAA 419
Cdd:COG1196 464 LLAELLEEAALLEA-----------ALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGA 525
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
107-352 |
1.55e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 1.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 107 QLKNTIKSLKQQNKQVEHQLEEEKKANNEKQKAERELEVQIQRLNIQKGKLNTDLYHTKRSLRYFEEESKDLAVRLQHSL 186
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 187 QRKGELERALsavtatQKKKAERQFSSRSKARMEWKLEQSMREQALLKAQLT---QLKESLKEVQLERDEYAEHLKGERA 263
Cdd:TIGR02168 316 RQLEELEAQL------EELESKLDELAEELAELEEKLEELKEELESLEAELEeleAELEELESRLEELEEQLETLRSKVA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 264 RWQQRMRKMSQEVCSLKKEKKHDKYRVEKLERSLSKL-----KHQMAEPLPPEPPAVPSEVELQHLRKELERVAGELQAQ 338
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELlkkleEAELKELQAELEELEEELEELQEELERLEEALEELREE 469
|
250
....*....|....
gi 1370466511 339 VEYNQRISLLNEGQ 352
Cdd:TIGR02168 470 LEEAEQALDAAERE 483
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
112-438 |
9.78e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 9.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 112 IKSLKQQNKQVEHQLEEEKKANNEKQKAERELEVQIQRLNIQKGKlnTDLYHTKRSlryfEEESKDLAVRLQHSLQRKGE 191
Cdd:TIGR02168 167 ISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEK--AERYKELKA----ELRELELALLVLRLEELREE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 192 LERALSAVTATQKKKAErqfSSRSKARMEWKLEQSMREQALLKAQLTQLKESLKEVQLERDEyaehLKGERARWQQRMRK 271
Cdd:TIGR02168 241 LEELQEELKEAEEELEE---LTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISR----LEQQKQILRERLAN 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 272 MSQEVCSLKKEKKHDKYRVEKLERSLSKLKHQMAEPLPPEPPAVPSEVELQHLRKELERVAGELQAQVE-YNQRISLLNE 350
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLEtLRSKVAQLEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 351 GQKERLREQEerlqeqqerlpEQEERLQQLAEPQNSFKELNNENKSVLQlEQQVKELQEKLGKERLEAASQQKQQLTAQL 430
Cdd:TIGR02168 394 QIASLNNEIE-----------RLEARLERLEDRRERLQQEIEELLKKLE-EAELKELQAELEELEEELEELQEELERLEE 461
|
....*...
gi 1370466511 431 SLMALPGE 438
Cdd:TIGR02168 462 ALEELREE 469
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
110-304 |
2.95e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.31 E-value: 2.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 110 NTIKSLKQQNKQVEHQLEEEKKANNEKQKAERELEVQIQRLNIQKGKLNTDLYHTKRSLRYFEEESKDLAVRLQHSLQRK 189
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 190 GELERALSAVTATQKKKAERQ-----FSSRSKARMEWKLE----------QSMREQALLKAQLTQLKESLKEVQLERDEY 254
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPplallLSPEDFLDAVRRLQylkylaparrEQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1370466511 255 AEHLKGERARWQQRMRKMSQEVCSLKKEKKHDKYRVEKLERSLSKLKHQM 304
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALI 229
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
229-429 |
8.39e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 49.14 E-value: 8.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 229 EQALLKAQLTQLKESLKEVQLERDEyAEHLKGERARWQQRMRKMSQEVCSLKKE------KKHDKYRVEKLERSLSKLKH 302
Cdd:PRK11281 57 EDKLVQQDLEQTLALLDKIDRQKEE-TEQLKQQLAQAPAKLRQAQAELEALKDDndeetrETLSTLSLRQLESRLAQTLD 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 303 QMAEPLPPEPPAVPSEVELQhlrKELERVAGELQAQVEYNQRI-SLLNEGQkerlreqeerlQEQQERLPEQEERL---Q 378
Cdd:PRK11281 136 QLQNAQNDLAEYNSQLVSLQ---TQPERAQAALYANSQRLQQIrNLLKGGK-----------VGGKALRPSQRVLLqaeQ 201
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1370466511 379 QLAEPQNSFKELNNENKSVLQ----------------LEQQVKELQEKLGKERLEAASQQKQQLTAQ 429
Cdd:PRK11281 202 ALLNAQNDLQRKSLEGNTQLQdllqkqrdyltariqrLEHQLQLLQEAINSKRLTLSEKTVQEAQSQ 268
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
104-331 |
6.17e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 6.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 104 KVSQLKNTIKSLKQ-QNKQVEHQLEEEKKANNEKQKAERE---LEVQIQRLN--IQKGK-LNTDLYHTKRSLRYFEEESK 176
Cdd:PRK03918 494 ELIKLKELAEQLKElEEKLKKYNLEELEKKAEEYEKLKEKlikLKGEIKSLKkeLEKLEeLKKKLAELEKKLDELEEELA 573
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 177 DLAVRLQHSL--------QRKGELERALSAVTATQKKKAERQFSSRSKARMEWKLEQSMREQALLKAQLTQLKESLKEVQ 248
Cdd:PRK03918 574 ELLKELEELGfesveeleERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELE 653
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 249 LERDEyaehlkGERARWQQRMRKMSQEVCSLKKEKKHDKYRVEKLERSLSKLKHQMAEPLPPEPpavpsevELQHLRKEL 328
Cdd:PRK03918 654 KKYSE------EEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKK-------ELEKLEKAL 720
|
...
gi 1370466511 329 ERV 331
Cdd:PRK03918 721 ERV 723
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
115-350 |
7.72e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.79 E-value: 7.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 115 LKQQNKQVEHQLEEEKKANNEKQKAERELEVQIQRLNIQKGKLNTDLYHTKRSLRYFEEESKDLAVRLQHSLQRKGELER 194
Cdd:pfam05483 217 LKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTK 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 195 ALSAVTATqkkkaerqfssrskarmewkLEQSMREQALLKAQLTQLKESLKEVQLERDEYAEHLKGERARWQQRMRKMSQ 274
Cdd:pfam05483 297 ELEDIKMS--------------------LQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEA 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 275 EVCSLKKEKKHDKYRVEKLERSLS----KLKHQMAEPLPPEPPAVPSEVELQhlrkELERVAGELQAQVEYNQRISLLNE 350
Cdd:pfam05483 357 TTCSLEELLRTEQQRLEKNEDQLKiitmELQKKSSELEEMTKFKNNKEVELE----ELKKILAEDEKLLDEKKQFEKIAE 432
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| GOLGA2L5 |
pfam15070 |
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein ... |
239-490 |
7.47e-43 |
|
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein family remains unknown. This family of proteins is thought to be found in the Golgi apparatus of eukaryotes.
Pssm-ID: 464485 [Multi-domain] Cd Length: 521 Bit Score: 162.16 E-value: 7.47e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 239 QLKESLKEVQLERDEYAEHLKGERARWQQRMRKMSQEVCSLKKEKKHDKYRVEKLERSLSKLKHQMAEPLPPEPPAVP-- 316
Cdd:pfam15070 1 QLMESLKQLQTERDQYAENLKEEGAVWQQKMQQLSEQVRTLREEKERSVSQVQELETSLAELKNQAAVPPAEEEQPPAgp 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 317 SEVE------LQHLRKELERVAGELQAQVEYNQRISLLNEGQKERLREQEERLQEQQERLPEQEERL------------- 377
Cdd:pfam15070 81 SEEEqrlqeeAEQLQKELEALAGQLQAQVQDNEQLSRLNQEQEQRLLELERAAERWGEQAEDRKQILedmqsdratisra 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 378 --------QQLAEPQNSFKELNNEN---KSVLQLEQQVK--------ELQEKLG-------------------------- 412
Cdd:pfam15070 161 lsqnrelkEQLAELQNGFVKLTNENmelTSALQSEQHVKkelakklgQLQEELGelketlelksqeaqslqeqrdqylah 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 413 -----------------------------------------------------KERLEAASQQKQQLTAQLSLMALPGEG 439
Cdd:pfam15070 241 lqqyvaayqqlasekeelhkqyllqtqlmdrlqheevqgkvaaemarqelqetQERLEALTQQNQQLQAQLSLLANPGEG 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1370466511 440 DGgghLDSE--GEEAPRPIPSIPQDLESREAMVAFFKSAGASAQEKQAQLQEQ 490
Cdd:pfam15070 321 DG---LESEeeEEEAPRPSLSIPEDFESREAMVAFFNSALAQAEEERAELRRQ 370
|
|
| GM130_C |
pfam19046 |
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 ... |
630-669 |
9.20e-19 |
|
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 protein that is bound by the GRASP65 PDZ domain pfam04495.
Pssm-ID: 465957 Cd Length: 46 Bit Score: 80.12 E-value: 9.20e-19
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1370466511 630 SPHDNPTAQPIV------QDHQEHPGLGSNCCVPFFCWAWLPRRRR 669
Cdd:pfam19046 1 SPPENPTAQQIMqllpeiQNPQEHPGLGSNPCIPFFYRADENDEVK 46
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
107-419 |
1.17e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.96 E-value: 1.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 107 QLKNTIKSLKQQNKQVEHQLEEEKKANNEKQKAERELEVQIQRLNIQKGKLNTDLYHTKRSLRYFEEESKDLAVRLQHSL 186
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 187 QRKGELERALSAVTATQKKKAERQfssrskARMEWKLEQSMREQALLKAQLTQLKESLKEVQLERDEYAEHLKgerARWQ 266
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEEL------EELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE---ELAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 267 QRMRKMSQEVcSLKKEKKHDKYRVEKLERSLSKLKHQMAEPLPPEPPAVPSEVELQhlRKELERVAGELQAQVEYNQRIS 346
Cdd:COG1196 387 ELLEALRAAA-ELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE--EALEEAAEEEAELEEEEEALLE 463
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1370466511 347 LLNEGQKERLREQEerlqeqqerlpEQEERLQQLAEPQNSFKELNNENKSVLQLEQQVKELQEKLGKERLEAA 419
Cdd:COG1196 464 LLAELLEEAALLEA-----------ALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGA 525
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
112-456 |
8.17e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 8.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 112 IKSLKQQNKQVEHQLEEEKKANNEKQKAERELEVQIQRLNIQKGKLntdlyhtkrslryfEEESKDLAVRLQHSLQRKGE 191
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEEL--------------ELELEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 192 LERALsavtatQKKKAERQFSSRSKARMEWKLEQSMREQALLKAQLTQLKESLKEVQLERDEYAEHLKGERARWQQRMRK 271
Cdd:COG1196 300 LEQDI------ARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 272 msqevcslkkekkhdkyRVEKLERSLSKLKHQMAEPLPPEPPAVPSEVELQHLRKELERVAGELQAQVEYNQRISLLNEG 351
Cdd:COG1196 374 -----------------LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 352 QKerlreqeerlqeqqerlpEQEERLQQLAEPQNSFKELNNENKSVLQLEQQVKELQEKLGKERLEAASQQKQQLTAQLS 431
Cdd:COG1196 437 EE------------------EEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE 498
|
330 340
....*....|....*....|....*
gi 1370466511 432 LMALPgEGDGGGHLDSEGEEAPRPI 456
Cdd:COG1196 499 AEADY-EGFLEGVKAALLLAGLRGL 522
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
107-352 |
1.55e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 1.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 107 QLKNTIKSLKQQNKQVEHQLEEEKKANNEKQKAERELEVQIQRLNIQKGKLNTDLYHTKRSLRYFEEESKDLAVRLQHSL 186
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 187 QRKGELERALsavtatQKKKAERQFSSRSKARMEWKLEQSMREQALLKAQLT---QLKESLKEVQLERDEYAEHLKGERA 263
Cdd:TIGR02168 316 RQLEELEAQL------EELESKLDELAEELAELEEKLEELKEELESLEAELEeleAELEELESRLEELEEQLETLRSKVA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 264 RWQQRMRKMSQEVCSLKKEKKHDKYRVEKLERSLSKL-----KHQMAEPLPPEPPAVPSEVELQHLRKELERVAGELQAQ 338
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELlkkleEAELKELQAELEELEEELEELQEELERLEEALEELREE 469
|
250
....*....|....
gi 1370466511 339 VEYNQRISLLNEGQ 352
Cdd:TIGR02168 470 LEEAEQALDAAERE 483
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
112-438 |
9.78e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 9.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 112 IKSLKQQNKQVEHQLEEEKKANNEKQKAERELEVQIQRLNIQKGKlnTDLYHTKRSlryfEEESKDLAVRLQHSLQRKGE 191
Cdd:TIGR02168 167 ISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEK--AERYKELKA----ELRELELALLVLRLEELREE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 192 LERALSAVTATQKKKAErqfSSRSKARMEWKLEQSMREQALLKAQLTQLKESLKEVQLERDEyaehLKGERARWQQRMRK 271
Cdd:TIGR02168 241 LEELQEELKEAEEELEE---LTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISR----LEQQKQILRERLAN 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 272 MSQEVCSLKKEKKHDKYRVEKLERSLSKLKHQMAEPLPPEPPAVPSEVELQHLRKELERVAGELQAQVE-YNQRISLLNE 350
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLEtLRSKVAQLEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 351 GQKERLREQEerlqeqqerlpEQEERLQQLAEPQNSFKELNNENKSVLQlEQQVKELQEKLGKERLEAASQQKQQLTAQL 430
Cdd:TIGR02168 394 QIASLNNEIE-----------RLEARLERLEDRRERLQQEIEELLKKLE-EAELKELQAELEELEEELEELQEELERLEE 461
|
....*...
gi 1370466511 431 SLMALPGE 438
Cdd:TIGR02168 462 ALEELREE 469
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
115-429 |
1.36e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 1.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 115 LKQQNKQVEhQLEEEKKANNEKQKAEREL-EVQIQRLNIQKGKLNTDLYHTKRSLRYFEEESKDLAVRLQHSLQRKGELE 193
Cdd:TIGR02169 193 IDEKRQQLE-RLRREREKAERYQALLKEKrEYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 194 RALSAVTATQKKKAE-RQFSSRSK-ARMEWKLEQSMREQALLKAQLTQLKESLKEVQLERDEY---AEHLKGERARWQQR 268
Cdd:TIGR02169 272 QLLEELNKKIKDLGEeEQLRVKEKiGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLlaeIEELEREIEEERKR 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 269 MRKMSQEVCSLKKE------------KKHDKYRVE--KLERSLSKLKHQMAEplppeppavpSEVELQHLRKELERVAGE 334
Cdd:TIGR02169 352 RDKLTEEYAELKEEledlraeleevdKEFAETRDElkDYREKLEKLKREINE----------LKRELDRLQEELQRLSEE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 335 LQaqvEYNQRISLLNEGQKERLREQEERLQEQQerlpEQEERLQQLAEpqnsfkELNNENKSVLQLEQQVKELQEKLGKE 414
Cdd:TIGR02169 422 LA---DLNAAIAGIEAKINELEEEKEDKALEIK----KQEWKLEQLAA------DLSKYEQELYDLKEEYDRVEKELSKL 488
|
330
....*....|....*
gi 1370466511 415 RLEAASQQKQQLTAQ 429
Cdd:TIGR02169 489 QRELAEAEAQARASE 503
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
110-304 |
2.95e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.31 E-value: 2.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 110 NTIKSLKQQNKQVEHQLEEEKKANNEKQKAERELEVQIQRLNIQKGKLNTDLYHTKRSLRYFEEESKDLAVRLQHSLQRK 189
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 190 GELERALSAVTATQKKKAERQ-----FSSRSKARMEWKLE----------QSMREQALLKAQLTQLKESLKEVQLERDEY 254
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPplallLSPEDFLDAVRRLQylkylaparrEQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1370466511 255 AEHLKGERARWQQRMRKMSQEVCSLKKEKKHDKYRVEKLERSLSKLKHQM 304
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALI 229
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
104-512 |
3.21e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.87 E-value: 3.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 104 KVSQLKNTIKSLKQQNKQVEHQLEEEKKANNEKQKAERELEVQIQRLNIQKGKLNTDLYHTKRSLRYFEEESKDLAVRLQ 183
Cdd:COG1196 275 ELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 184 HSLQRKGELERALSAVTATQKKKAERQFSSRSKARmewkleQSMREQALLKAQLTQLKESLKEVQLERDEYAEHLKGERA 263
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAEAEEELEELAEELL------EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 264 RWQQRMRKMSQEVCSLKKEKkhdkyrvEKLERSLSKLKHQMAEPLPPEPPAVPSEVELQHLRKELERVAGELQAQVEYNQ 343
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAA-------EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 344 RISLLNEGQKERLREQEERLQEQQERLPEQEERLQQLAEPQNSFKELNNENKSVLQLEQQVKELQEKLGKERLEAASQQK 423
Cdd:COG1196 502 DYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDK 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 424 QQLTAQLSLMALPGEGDGGGHL-DSEGEEAPRPIPSIPQDLESREAMVAFFKSAGASAQEKQAQLQEQSGFMDHLEEKAD 502
Cdd:COG1196 582 IRARAALAAALARGAIGAAVDLvASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGS 661
|
410
....*....|
gi 1370466511 503 LSELVEKEEL 512
Cdd:COG1196 662 LTGGSRRELL 671
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
141-432 |
5.41e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.48 E-value: 5.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 141 RELEVQIQRLNIQKGK------LNTDLYHTKRSLRYFEEESKDLAVRLQHSLQRKGELERAlSAVTATQKKKAERQFSSR 214
Cdd:COG1196 196 GELERQLEPLERQAEKaeryreLKEELKELEAELLLLKLRELEAELEELEAELEELEAELE-ELEAELAELEAELEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 215 SKARMEWKLEQSMREQALLKAQLTQLKESLKEVQLERDEYA---EHLKGERARWQQRMRKMSQEVCSLKKEKKHDKYRVE 291
Cdd:COG1196 275 ELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEerlEELEEELAELEEELEELEEELEELEEELEEAEEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 292 KLERSLSKLKHQMAEPLPPEPPavpsevELQHLRKELERVAGELQAQVEYNQRISLLNEGQKERLREQEERLQEQQErlp 371
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAE------AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEE--- 425
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1370466511 372 EQEERLQQLAEPQNSFKELNNENKSVLQLEQQVKELQEKLGKERLEAASQQKQQLTAQLSL 432
Cdd:COG1196 426 LEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
108-411 |
1.91e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 1.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 108 LKNTIKSLKQQNKQVEHQLEEEKKANNEKQKAERELEVQIQRLNIQKGKLNTDLYHTKRSLRYFEEESKDLAVRLQHSLQ 187
Cdd:TIGR02169 686 LKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEA 765
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 188 RKGELERALSAVtatqkkKAERQFSSRSKARMEWK-LEQSMREQ----ALLKAQLTQLKESLKEVQLERdEYAEHlkgER 262
Cdd:TIGR02169 766 RIEELEEDLHKL------EEALNDLEARLSHSRIPeIQAELSKLeeevSRIEARLREIEQKLNRLTLEK-EYLEK---EI 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 263 ARWQQRMRKMSQEVCSLKKEKKHDKYRVEKLERSLSKLKHQMAEPLPPEPPAVPSEVELQHLRKELERVAGELQAQVE-Y 341
Cdd:TIGR02169 836 QELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEkK 915
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 342 NQRISLLNEgqkerlreqeerlqeqqeRLPEQEERLQQLAEPQNSFKELNNENKSVLQLEQQVKELQEKL 411
Cdd:TIGR02169 916 RKRLSELKA------------------KLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEI 967
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
222-432 |
8.28e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 8.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 222 KLEQSMREQALLKAQLTQLKESLKEVQLERDEYAEHLKGERARWQQrmrkMSQEVCSLKKEKKHDKYRVEKLERSLSKLK 301
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE----LSRQISALRKDLARLEAEVEQLEERIAQLS 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 302 HQMAEPLPPEPPAVPSEVELQHLRKELERVAGELQAQVE-YNQRISLLNEGQKERLREQEERLQEQQERLPEQEERLQQL 380
Cdd:TIGR02168 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEqLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI 833
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1370466511 381 AEPQNSFKELNNE----NKSVLQLEQQVKELQEKLGK--ERLEAASQQKQQLTAQLSL 432
Cdd:TIGR02168 834 AATERRLEDLEEQieelSEDIESLAAEIEELEELIEEleSELEALLNERASLEEALAL 891
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
104-427 |
1.07e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 1.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 104 KVSQLKNTIKSLKQQNKQVEHQLEEEKKANNEkQKAERE-LEVQIQRLNIQKGKLntdlyhtKRSLRYFEEESKDLAVRL 182
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLEEAEEELAE-AEAEIEeLEAQIEQLKEELKAL-------REALDELRAELTLLNEEA 819
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 183 QHSLQRKGELERALSAvtatqkKKAERQFSSRSKARMEWKLEQSMREQALLKAQLTQLKESLKEVQLERDEYAEHLKGER 262
Cdd:TIGR02168 820 ANLRERLESLERRIAA------TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLR 893
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 263 ARWQQRMRKmsqevcslkkekkhdkyrVEKLERSLSKLKHqmaeplppeppavpsevELQHLRKELERVAGELQ-AQVEY 341
Cdd:TIGR02168 894 SELEELSEE------------------LRELESKRSELRR-----------------ELEELREKLAQLELRLEgLEVRI 938
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 342 NQRISLLNEGQKERLREQEERLQEQQERLPEQEERLQQLaepQNSFKELNNENKSVLQleqqvkELQEKlgKERLEAASQ 421
Cdd:TIGR02168 939 DNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRL---ENKIKELGPVNLAAIE------EYEEL--KERYDFLTA 1007
|
....*.
gi 1370466511 422 QKQQLT 427
Cdd:TIGR02168 1008 QKEDLT 1013
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
94-429 |
3.02e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 50.74 E-value: 3.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 94 LAVVPDSRSVKVSQLKNTIKSLKQQNKQVEHQLEEEKKA----NNEKQKAERELEVQIQRLNIQKGKLNTDLYHTKRSLR 169
Cdd:TIGR00618 519 DIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQraslKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQD 598
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 170 YFEEESK--DLAVRLQHSLQRKGELERALSAVTATQKKKAER-QFSSRSKARMEWKLEQSMREQALLKaqLTQLKESLKE 246
Cdd:TIGR00618 599 LTEKLSEaeDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQElALKLTALHALQLTLTQERVREHALS--IRVLPKELLA 676
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 247 VQLERDEYAEHLKGERARWQQRM-RKMSQEVCSLKKEKKHDKYRvEKLERSLSKLKHQMAEPlppeppavpsEVELQHLR 325
Cdd:TIGR00618 677 SRQLALQKMQSEKEQLTYWKEMLaQCQTLLRELETHIEEYDREF-NEIENASSSLGSDLAAR----------EDALNQSL 745
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 326 KELERVAGE-LQAQVEYNQRISLLNEGQKERLREQEERLQEQQERLPEQEERLQQLAEPQNSFKE--------LNNENKS 396
Cdd:TIGR00618 746 KELMHQARTvLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQeipsdediLNLQCET 825
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1370466511 397 VLQLEQQVKELQEKLGK---------ERLEAASQQKQQLTAQ 429
Cdd:TIGR00618 826 LVQEEEQFLSRLEEKSAtlgeithqlLKYEECSKQLAQLTQE 867
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
93-472 |
5.28e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.97 E-value: 5.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 93 ELAVVPDSRSVKVSQLKNTIKSLKQQNKQVEHQLEEEKKANNEKQKAERELEvqiqRLNIQKGKLNTDLYHTKRSLRYFE 172
Cdd:pfam02463 160 EEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALE----YYQLKEKLELEEEYLLYLDYLKLN 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 173 EEskdlavrLQHSLQRKGELERALSAvtatqKKKAERQFSSRSKARMEWKLEQSMREQALLKAQLTQLKESLKEVQLERD 252
Cdd:pfam02463 236 EE-------RIDLLQELLRDEQEEIE-----SSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELL 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 253 EY---AEHLKGERARWQQRMRKMSQEVCSLKKEKKHDKyrVEKLERSLSKLKHQMAEPLPPEPPAVPSEVELQHLRKELE 329
Cdd:pfam02463 304 KLerrKVDDEEKLKESEKEKKKAEKELKKEKEEIEELE--KELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 330 RVAGELQAQVEYNQRISLLNEGQKERLREQEERLQEQQERLPEQEERLQQLAEPQnSFKELNNENKSVLQLEQQV----- 404
Cdd:pfam02463 382 ESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEE-ESIELKQGKLTEEKEELEKqelkl 460
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1370466511 405 KELQEKLGKERLEAASQQKQQLTAQLSLMALPGEGDGGGHLDSEGEEAPRPIPSIPQDLESREAMVAF 472
Cdd:pfam02463 461 LKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAH 528
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
229-429 |
8.39e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 49.14 E-value: 8.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 229 EQALLKAQLTQLKESLKEVQLERDEyAEHLKGERARWQQRMRKMSQEVCSLKKE------KKHDKYRVEKLERSLSKLKH 302
Cdd:PRK11281 57 EDKLVQQDLEQTLALLDKIDRQKEE-TEQLKQQLAQAPAKLRQAQAELEALKDDndeetrETLSTLSLRQLESRLAQTLD 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 303 QMAEPLPPEPPAVPSEVELQhlrKELERVAGELQAQVEYNQRI-SLLNEGQkerlreqeerlQEQQERLPEQEERL---Q 378
Cdd:PRK11281 136 QLQNAQNDLAEYNSQLVSLQ---TQPERAQAALYANSQRLQQIrNLLKGGK-----------VGGKALRPSQRVLLqaeQ 201
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1370466511 379 QLAEPQNSFKELNNENKSVLQ----------------LEQQVKELQEKLGKERLEAASQQKQQLTAQ 429
Cdd:PRK11281 202 ALLNAQNDLQRKSLEGNTQLQdllqkqrdyltariqrLEHQLQLLQEAINSKRLTLSEKTVQEAQSQ 268
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
109-511 |
3.03e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 3.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 109 KNTIKSLKQQNKQVEhQLEEEKKANNEKQKAERELEVQIQRLNIQKGKLNTDLYHTKRSLRYFE--EESKDLAVRLQHSL 186
Cdd:COG4717 67 ELNLKELKELEEELK-EAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPlyQELEALEAELAELP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 187 QRKGELERALSAVTATQKKKAERQfssRSKARMEWKLEQSMREQALLK-AQLTQLKESLKEVQLERdeyaEHLKGERARW 265
Cdd:COG4717 146 ERLEELEERLEELRELEEELEELE---AELAELQEELEELLEQLSLATeEELQDLAEELEELQQRL----AELEEELEEA 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 266 QQRMRKMSQEVCSLKKEK--KHDKYRVEKLERSL--------------SKLKHQMAEPLPPEPPAVPSEVELQHLRKELE 329
Cdd:COG4717 219 QEELEELEEELEQLENELeaAALEERLKEARLLLliaaallallglggSLLSLILTIAGVLFLVLGLLALLFLLLAREKA 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 330 RVAGELQAQVEYNQRISLLNEGQKERLREQEERLQEQQERLPEQEERLQQLAEPQNSFKELNNENKsVLQLEQQVKELQE 409
Cdd:COG4717 299 SLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQ-LEELEQEIAALLA 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 410 KLGKERLEA------ASQQKQQLTAQLSLM--ALPGEGDGGGHLDSEGEEAprpipSIPQDLESREAMVAFFKSAGASAQ 481
Cdd:COG4717 378 EAGVEDEEElraaleQAEEYQELKEELEELeeQLEELLGELEELLEALDEE-----ELEEELEELEEELEELEEELEELR 452
|
410 420 430
....*....|....*....|....*....|
gi 1370466511 482 EKQAQLQEQsgfMDHLEEKADLSELVEKEE 511
Cdd:COG4717 453 EELAELEAE---LEQLEEDGELAELLQELE 479
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
104-431 |
4.12e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.94 E-value: 4.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 104 KVSQLKNTIKSLKQQNKQVEHQLEEEKKANNEKQKAERELEVQIQRLNIQKGKLNTDLYHTKRSLRYFEEESKDLAVRLQ 183
Cdd:TIGR04523 212 KNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLN 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 184 hslQRKGELERALSAVTATQKKKAERQFSSRSKARMEWKLEQSMREQAL--LKAQLTQLKESLKEVQLERDEYAEHLKGE 261
Cdd:TIGR04523 292 ---QLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIIsqLNEQISQLKKELTNSESENSEKQRELEEK 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 262 rarwQQRMRKMSQEVCSLKKEKKHDKYRVEKLErslSKLKHQMAEPLPPEPPAVPSEVELQHLRKELERVageLQAQVEY 341
Cdd:TIGR04523 369 ----QNEIEKLKKENQSYKQEIKNLESQINDLE---SKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERL---KETIIKN 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 342 NQRISLLNEG--------------QKERLREQEERLQEQQERLPEQEERLQQLAEPQNSFKELNNENKsvlQLEQQVKEL 407
Cdd:TIGR04523 439 NSEIKDLTNQdsvkeliiknldntRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKK---ELEEKVKDL 515
|
330 340
....*....|....*....|....*.
gi 1370466511 408 QEK--LGKERLEAASQQKQQLTAQLS 431
Cdd:TIGR04523 516 TKKisSLKEKIEKLESEKKEKESKIS 541
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
73-413 |
5.05e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.60 E-value: 5.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 73 IHGESPTSSATLKDLESPCQELavvpDSRSVKVSQLKNTIKSLKQQNKQVEHQLEEEKKANNEKQKAERELEVQIQRLNI 152
Cdd:PRK03918 212 ISSELPELREELEKLEKEVKEL----EELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 153 QKGK------LNTDLYHTKRSLRYFEEESKDLAVRLQHSLQRKGELERALSAVTATQKKKAERQfssRSKARMEWKLEQS 226
Cdd:PRK03918 288 LKEKaeeyikLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELE---KRLEELEERHELY 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 227 MREQAlLKAQLTQLKESLKEVQLER-DEYAEHLKGERARWQQRMRKMSQEVCSLKKEKKHDKYRVEKLERSLSK------ 299
Cdd:PRK03918 365 EEAKA-KKEELERLKKRLTGLTPEKlEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcgr 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 300 ----------LKHQMAEPLPPEPPAVPSEVELQHLRKELERVAGELQAQVEYNQRISLLNEGQKERLREQEERLQEQQER 369
Cdd:PRK03918 444 elteehrkelLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKK 523
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1370466511 370 LPEQEERLQQLAEPQNSFKELNNENKSVLQLEQQVKELQEKLGK 413
Cdd:PRK03918 524 AEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDE 567
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
104-418 |
5.51e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.55 E-value: 5.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 104 KVSQLKNTIKSLKQQNKQVEHQLEEEKKANNEKQKAERELEVQIQRLNIQKGKLNTDLYHTKRSLRYFEEESKDLAVRLQ 183
Cdd:TIGR04523 336 IISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIK 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 184 HSLQRKGELERALsavtatQKKKAERQFSSRSKARMEwkleqsmREQALLKAQLTQLKESLKEVQLERDEYAEHLKGERA 263
Cdd:TIGR04523 416 KLQQEKELLEKEI------ERLKETIIKNNSEIKDLT-------NQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQ 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 264 RW---QQRMRKMSQEVCSLKKEKKHDKYRVEKLER--SLSKLKHQMAEPLPPEPPAVPSEVELQHLRKELERVAGELQAQ 338
Cdd:TIGR04523 483 NLeqkQKELKSKEKELKKLNEEKKELEEKVKDLTKkiSSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKE 562
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 339 V-EYNQRISLLNEGQKERLREQEerlqeqqerlpEQEERLQQL-AEPQNSFKELNNENKSVLQLEQQVKELQEKlgKERL 416
Cdd:TIGR04523 563 IdEKNKEIEELKQTQKSLKKKQE-----------EKQELIDQKeKEKKDLIKEIEEKEKKISSLEKELEKAKKE--NEKL 629
|
..
gi 1370466511 417 EA 418
Cdd:TIGR04523 630 SS 631
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
107-431 |
7.75e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.21 E-value: 7.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 107 QLKNTIKSLKQQNKQVEHQLEEEKKANNEKQKAERELEVQIQRLNIQKGKLNT-----DLYHTKRSLRYFEEESKDLAVR 181
Cdd:PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVcgrelTEEHRKELLEEYTAELKRIEKE 467
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 182 LQHSLQRKGELERALSavtatqkkkaerqfssrsKARMEWKLEQSMREQALLKAQLTQLKESLKEVQLERDEYAEHlkgE 261
Cdd:PRK03918 468 LKEIEEKERKLRKELR------------------ELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAE---E 526
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 262 RARWQQRMRKMSQEVCSLKKEKKhdkyRVEKLERSLSKLKHQMAEPlppeppavpsEVELQHLRKELERVAGELQAQVE- 340
Cdd:PRK03918 527 YEKLKEKLIKLKGEIKSLKKELE----KLEELKKKLAELEKKLDEL----------EEELAELLKELEELGFESVEELEe 592
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 341 --------YNQRISLLNEGQKERlreqeerlqeqqerlpEQEERLQQLA-EPQNSFKELNNENKSVLQLEQQVKELQEKL 411
Cdd:PRK03918 593 rlkelepfYNEYLELKDAEKELE----------------REEKELKKLEeELDKAFEELAETEKRLEELRKELEELEKKY 656
|
330 340
....*....|....*....|
gi 1370466511 412 GKERLEAASQQKQQLTAQLS 431
Cdd:PRK03918 657 SEEEYEELREEYLELSRELA 676
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
109-431 |
2.40e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.75 E-value: 2.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 109 KNTIKSLKQQNKQVEHQLEEEKK-ANNEKQKAERELEVQIQRLNIQKGKLNTDLYHTKRSLRYFEEESKDLAVRLQHSLQ 187
Cdd:PTZ00121 1356 ADEAEAAEEKAEAAEKKKEEAKKkADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADE 1435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 188 RKGELERALSAVTATQKKKAERQFSSRSKARMEWKLEQSMREQALLKAQLTQLKESLKEVQLERDEyaehlkgerARWQQ 267
Cdd:PTZ00121 1436 AKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADE---------AKKAA 1506
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 268 RMRKMSQEVCSLKKEKKHDKYRVEKLERSLSKLKhQMAEPLPPEPPAVPSEVELQHLRKELERVAGELQAQVEYNQRISL 347
Cdd:PTZ00121 1507 EAKKKADEAKKAEEAKKADEAKKAEEAKKADEAK-KAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEE 1585
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 348 LNEGQKERLREQEERLQEQQERLPEQEERLQQLAEPQNSFKELNNENKSVLQLEQqvKELQEKLGKERLEAASQQKQQLT 427
Cdd:PTZ00121 1586 AKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKK--KEAEEKKKAEELKKAEEENKIKA 1663
|
....
gi 1370466511 428 AQLS 431
Cdd:PTZ00121 1664 AEEA 1667
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
102-300 |
2.55e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.28 E-value: 2.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 102 SVKVSQLKNTIKSLKQQNKQVEHQLEEEKKANNEKQKAERELEVQIQRLNIQKGKLNTDLYHTKRSLRYFEEESKDLAvR 181
Cdd:TIGR02168 308 RERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR-S 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 182 LQHSLQRKGELERAlsavtatQKKKAERQFSSRSKARMEWKLEQSMREQALLKAQLTQLKESLKEVQLERDEYAEHLKGE 261
Cdd:TIGR02168 387 KVAQLELQIASLNN-------EIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERL 459
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1370466511 262 RARW---QQRMRKMSQEVCSLKKEKKHDKYRVEKLERSLSKL 300
Cdd:TIGR02168 460 EEALeelREELEEAEQALDAAERELAQLQARLDSLERLQENL 501
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
104-351 |
4.07e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.89 E-value: 4.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 104 KVSQLKNTIKSLKQQNKQVEHQLEEEKKANNEKQKAERELEVQIQRLNIQKGKLNTDLyhtKRSlryfEEESKDLAVRLQ 183
Cdd:TIGR02168 282 EIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEEL---AEL----EEKLEELKEELE 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 184 hSLQRKGELERALSAVTATQKKKAERQFSSRSKARMEWKleqsmREQALLKAQLTQLKESLkevqlerdeyaEHLKGERA 263
Cdd:TIGR02168 355 -SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE-----LQIASLNNEIERLEARL-----------ERLEDRRE 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 264 RWQQRMRKMSQEVCSLKKEKKHDkyRVEKLERSLSKLKHQMAEPLPPEPPAVPSEVELQHLRKELERVAGELQAQVEYNQ 343
Cdd:TIGR02168 418 RLQQEIEELLKKLEEAELKELQA--ELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLE 495
|
....*...
gi 1370466511 344 RISLLNEG 351
Cdd:TIGR02168 496 RLQENLEG 503
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
104-415 |
4.77e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 4.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 104 KVSQLKNTIKSLKQQNKQVEHQLEEEKKANNEKQKAERELEVQIQRlniqkgklNTDLYHTKRSLRYFEEESKDLAVRLQ 183
Cdd:PTZ00121 1477 KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAK--------KADEAKKAEEAKKADEAKKAEEKKKA 1548
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 184 HSLQRKGELERALSAVTATQKKKAE-RQFSSRSKARMEWKLEQSMREQALlkaQLTQLKESLKEVQLERDEyAEHLKGER 262
Cdd:PTZ00121 1549 DELKKAEELKKAEEKKKAEEAKKAEeDKNMALRKAEEAKKAEEARIEEVM---KLYEEEKKMKAEEAKKAE-EAKIKAEE 1624
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 263 ARWQQRMRKmsqEVCSLKKEKKHDKYRVEKLERSLSKLKHQMAEPLPPEPPAVPSEVELQHLRKELERVAGELQAQVEYN 342
Cdd:PTZ00121 1625 LKKAEEEKK---KVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEA 1701
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1370466511 343 QRISLLNEGQKERLRE------QEERLQEQQERLPEQEERLQQLAEpqnSFKELNNENKSVLQLEQQVKELQEKLGKER 415
Cdd:PTZ00121 1702 KKAEELKKKEAEEKKKaeelkkAEEENKIKAEEAKKEAEEDKKKAE---EAKKDEEEKKKIAHLKKEEEKKAEEIRKEK 1777
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
104-331 |
6.17e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 6.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 104 KVSQLKNTIKSLKQ-QNKQVEHQLEEEKKANNEKQKAERE---LEVQIQRLN--IQKGK-LNTDLYHTKRSLRYFEEESK 176
Cdd:PRK03918 494 ELIKLKELAEQLKElEEKLKKYNLEELEKKAEEYEKLKEKlikLKGEIKSLKkeLEKLEeLKKKLAELEKKLDELEEELA 573
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 177 DLAVRLQHSL--------QRKGELERALSAVTATQKKKAERQFSSRSKARMEWKLEQSMREQALLKAQLTQLKESLKEVQ 248
Cdd:PRK03918 574 ELLKELEELGfesveeleERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELE 653
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 249 LERDEyaehlkGERARWQQRMRKMSQEVCSLKKEKKHDKYRVEKLERSLSKLKHQMAEPLPPEPpavpsevELQHLRKEL 328
Cdd:PRK03918 654 KKYSE------EEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKK-------ELEKLEKAL 720
|
...
gi 1370466511 329 ERV 331
Cdd:PRK03918 721 ERV 723
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
84-431 |
6.21e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 6.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 84 LKDLESPCQELAVVPDSRSVKVSQLKNTIKSLKQQNKQVEHQLEEEKKANNEKQ--------------KAERELEVQIQR 149
Cdd:TIGR04523 220 ISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQkeleqnnkkikeleKQLNQLKSEISD 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 150 LNIQKGK-------------------LNTDLYHTKRSLRYFEEESKDLAVRLQHS----LQRKGELERALSAVTATQKKK 206
Cdd:TIGR04523 300 LNNQKEQdwnkelkselknqekkleeIQNQISQNNKIISQLNEQISQLKKELTNSesenSEKQRELEEKQNEIEKLKKEN 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 207 AERQFSSRSKARMEWKLEQSMREQALLKAQLTQLKESLKEVQLERDEYAEHLKGERARWQQRMRKMSQEVCSLKKE-KKH 285
Cdd:TIGR04523 380 QSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIiKNL 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 286 DKYR------VEKLERSLSKLKHqmaeplppeppavpsevELQHLRKELERVAGELQaqvEYNQRISLLNEGQKERLREQ 359
Cdd:TIGR04523 460 DNTResletqLKVLSRSINKIKQ-----------------NLEQKQKELKSKEKELK---KLNEEKKELEEKVKDLTKKI 519
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1370466511 360 EERLQEQQERLPEQEERLQQLAEPQNSFKELNNENKSVlQLEQQVKELQEKLGK-----ERLEAASQQKQQLTAQLS 431
Cdd:TIGR04523 520 SSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKE-NLEKEIDEKNKEIEElkqtqKSLKKKQEEKQELIDQKE 595
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
104-430 |
7.16e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 7.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 104 KVSQLKNTIKSLKQQNKQVEHQLEEEKKANNEKQKAERELEVQIQRLNIQKGKLNTDLYHTKRSLRYFEEESKDL-AVRL 182
Cdd:PTZ00121 1392 KADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAeEAKK 1471
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 183 QHSLQRKGELERA---LSAVTATQKKKAE---RQFSSRSKARMEWKLEQSMREQALLKAQLTQLKESLKEVQlERDEYAE 256
Cdd:PTZ00121 1472 ADEAKKKAEEAKKadeAKKKAEEAKKKADeakKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAE-EKKKADE 1550
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 257 HLKGERARWQQRMRKMSQEvcslKKEKKHDKYRVEKLERSLSKLKHQMAEPLPPEPPAVPSEVELQHLRKELERVAGELQ 336
Cdd:PTZ00121 1551 LKKAEELKKAEEKKKAEEA----KKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK 1626
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 337 AQVEYNQRISLLNEGQKERLREQEERLQEQQERLPEQEERLQQLAEPQNSFKELNNENKSVLQLEQQV-KELQEKLGKER 415
Cdd:PTZ00121 1627 KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALkKEAEEAKKAEE 1706
|
330
....*....|....*
gi 1370466511 416 LEAASQQKQQLTAQL 430
Cdd:PTZ00121 1707 LKKKEAEEKKKAEEL 1721
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
84-284 |
7.26e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.12 E-value: 7.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 84 LKDLESPCQELAVVPDSRSVKVSQLKNTIKSLKQQNKQVEHQLEEEKKANNEKQKAERELEVQIQRLNIQKgklntdlyh 163
Cdd:TIGR02168 339 LAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL--------- 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 164 tkrslryfeeesKDLAVRLQHSLQRKGELERALSavtatqkkKAERQFSSRSKARMEWKLEQSMREQALLKAQLTQLKES 243
Cdd:TIGR02168 410 ------------ERLEDRRERLQQEIEELLKKLE--------EAELKELQAELEELEEELEELQEELERLEEALEELREE 469
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1370466511 244 LKEVQLERDEYAEHLKGERARW------QQRMRKMSQEVCSLKKEKK 284
Cdd:TIGR02168 470 LEEAEQALDAAERELAQLQARLdslerlQENLEGFSEGVKALLKNQS 516
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
115-350 |
7.72e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.79 E-value: 7.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 115 LKQQNKQVEHQLEEEKKANNEKQKAERELEVQIQRLNIQKGKLNTDLYHTKRSLRYFEEESKDLAVRLQHSLQRKGELER 194
Cdd:pfam05483 217 LKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTK 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 195 ALSAVTATqkkkaerqfssrskarmewkLEQSMREQALLKAQLTQLKESLKEVQLERDEYAEHLKGERARWQQRMRKMSQ 274
Cdd:pfam05483 297 ELEDIKMS--------------------LQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEA 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 275 EVCSLKKEKKHDKYRVEKLERSLS----KLKHQMAEPLPPEPPAVPSEVELQhlrkELERVAGELQAQVEYNQRISLLNE 350
Cdd:pfam05483 357 TTCSLEELLRTEQQRLEKNEDQLKiitmELQKKSSELEEMTKFKNNKEVELE----ELKKILAEDEKLLDEKKQFEKIAE 432
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
195-431 |
1.15e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 195 ALSAVTATQKKKAERQFSSRSKARMEWKLEQSMREQALLKAQLTQLKESLKEVQLERDEyaehLKGERARWQQRMRKMSQ 274
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRA----LEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 275 EVCSLKKEKKHDKYRVEKLERSLSKLKHQ----MAEPLPPEPPAVPSEVELQHLRKELERVAGELQAQV-EYNQRISLLN 349
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQpplaLLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLaELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 350 EGQKERLREQEERLQEQQERLPEQEERLQQLAEPQNSFKELNNENKsvlQLEQQVKELQEKLGKERLEAASQQKQQLTAQ 429
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELA---ELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
..
gi 1370466511 430 LS 431
Cdd:COG4942 248 FA 249
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
106-425 |
1.56e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.03 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 106 SQLKNTIKSLKQQNKQVEHQLEEEK----KANNEKQKAERELEVQIQRLNIQKGKLNTDLYHTKRSLRYFEEESKDLAVR 181
Cdd:pfam15921 299 SQLEIIQEQARNQNSMYMRQLSDLEstvsQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQ 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 182 LQHSLQRKGELERALSAVTATQKKKAERQFSS-----RSKARMEWKLEQSMREQALLKAQLT----QLKESLKEVQLERD 252
Cdd:pfam15921 379 LQKLLADLHKREKELSLEKEQNKRLWDRDTGNsitidHLRRELDDRNMEVQRLEALLKAMKSecqgQMERQMAAIQGKNE 458
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 253 --EYAEHLKGERARWQQRMRKMSQEVCSLKKEKKHDKYRVEKLERSLSKlKHQMAEPLPPEPPAVPSEV-----ELQHLR 325
Cdd:pfam15921 459 slEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQE-KERAIEATNAEITKLRSRVdlklqELQHLK 537
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 326 KE---LERVAGELQA----QVEYNQRISLLNEGQKERLREQEERLQEQQERLPEQEERLQQLAEPQNSFKEL----NNEN 394
Cdd:pfam15921 538 NEgdhLRNVQTECEAlklqMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFkilkDKKD 617
|
330 340 350
....*....|....*....|....*....|....*..
gi 1370466511 395 KSVLQLEQQVKELQ-EKL-----GKERLEAASQQKQQ 425
Cdd:pfam15921 618 AKIRELEARVSDLElEKVklvnaGSERLRAVKDIKQE 654
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
104-425 |
1.65e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.54 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 104 KVSQLKNTIKSLKQQNKQVEHQLEEEK-----------KANNE---KQKAERELEVQIQRLNIQKGKLNTDLYHTKRSLR 169
Cdd:TIGR04523 69 KINNSNNKIKILEQQIKDLNDKLKKNKdkinklnsdlsKINSEiknDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIK 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 170 YFEEESKDLAVRLQHSLQRKGELERALSAVTATQKKKAERQFSSRSK-ARMEWKL---EQSMREQALLKAQLTQLKESL- 244
Cdd:TIGR04523 149 KKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKlLKLELLLsnlKKKIQKNKSLESQISELKKQNn 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 245 ---KEVQLERDEYAEhLKGERARWQQRMRKMSQEVCSLKKEKKHDKYRVEK-------LERSLSKLKHQMAEPLPPEPPA 314
Cdd:TIGR04523 229 qlkDNIEKKQQEINE-KTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQnnkkikeLEKQLNQLKSEISDLNNQKEQD 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 315 VPSEV--ELQHLRKELErvagELQAQV-EYNQRISLLNEgqkerlrEQEERLQEQQERLPEQEERLQQLAEPQNSFKELN 391
Cdd:TIGR04523 308 WNKELksELKNQEKKLE----EIQNQIsQNNKIISQLNE-------QISQLKKELTNSESENSEKQRELEEKQNEIEKLK 376
|
330 340 350
....*....|....*....|....*....|....*...
gi 1370466511 392 NENKSVLQ----LEQQVKELQEKLGKErlEAASQQKQQ 425
Cdd:TIGR04523 377 KENQSYKQeiknLESQINDLESKIQNQ--EKLNQQKDE 412
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
100-434 |
1.80e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 100 SRSVKVSQLKNTIKSLKQQNKQVEHQLEEEKkannEKQKAERELEVQIQRLNIQKGKLNTDLYHTKRSLRY-FEEESKDL 178
Cdd:COG4717 122 EKLLQLLPLYQELEALEAELAELPERLEELE----ERLEELRELEEELEELEAELAELQEELEELLEQLSLaTEEELQDL 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 179 AVRLQHSLQRKGELERALSAVTAtQKKKAERQFSSRSKARMEWKLEQSMREQALLKAQLTQLkESLKEVQLERDEYAEHL 258
Cdd:COG4717 198 AEELEELQQRLAELEEELEEAQE-ELEELEEELEQLENELEAAALEERLKEARLLLLIAAAL-LALLGLGGSLLSLILTI 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 259 KG----------ERARWQQRMRK-MSQEVCSLKKEKKHDKYRVEKLERSLSKLKHQMAEPLPPEPPAVPSEVELQHLRKE 327
Cdd:COG4717 276 AGvlflvlgllaLLFLLLAREKAsLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLRE 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 328 LERVAGELQAQVEYNQRISLLNEGQkerlREQEERLQEQQERLPEQEERLQQLAEPQNSFKELNNENKSVL------QLE 401
Cdd:COG4717 356 AEELEEELQLEELEQEIAALLAEAG----VEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLealdeeELE 431
|
330 340 350
....*....|....*....|....*....|....*
gi 1370466511 402 QQVKELQEKL--GKERLEAASQQKQQLTAQLSLMA 434
Cdd:COG4717 432 EELEELEEELeeLEEELEELREELAELEAELEQLE 466
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
106-282 |
2.04e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 106 SQLKNTIKSLKQQNKQVEHQLEEEKKANNEKQKAEREL---EVQIQRLNIQKGKLNTDLYHTKRSLRYFEE--ESKDLAV 180
Cdd:COG3883 37 AELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIaeaEAEIEERREELGERARALYRSGGSVSYLDVllGSESFSD 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 181 RLQHSLqrkgelerALSAVTATQKKKAERQFSSRSK-ARMEWKLEQSMREQALLKAQLTQLKESLKEVQLERDEYAEHLK 259
Cdd:COG3883 117 FLDRLS--------ALSKIADADADLLEELKADKAElEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLS 188
|
170 180
....*....|....*....|...
gi 1370466511 260 GERARWQQRMRKMSQEVCSLKKE 282
Cdd:COG3883 189 AEEAAAEAQLAELEAELAAAEAA 211
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
92-340 |
2.20e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.67 E-value: 2.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 92 QELAVVPDSRSVKVSQLKNTIKSLKQQNKQVEHQLEEEKKANNEKQKAERELEVQIQRLNIQK----------GKLNTDL 161
Cdd:PTZ00121 1525 DEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKkaeearieevMKLYEEE 1604
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 162 YHTKRSLRYFEEESKDLAVRLQHSLQRKGELERaLSAVTATQKKKAERQFSSRSKARMEWKLEQSMREQALLKAqltqlk 241
Cdd:PTZ00121 1605 KKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQ-LKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKA------ 1677
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 242 ESLKEVQLERDEYAEHL--KGERARWQQRMRKMSQE----VCSLKKEKKHDKYRVEKLERSLSKLKHQMAEPLPPEPPAV 315
Cdd:PTZ00121 1678 EEAKKAEEDEKKAAEALkkEAEEAKKAEELKKKEAEekkkAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKK 1757
|
250 260
....*....|....*....|....*
gi 1370466511 316 psevELQHLRKELERVAGELQAQVE 340
Cdd:PTZ00121 1758 ----KIAHLKKEEEKKAEEIRKEKE 1778
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
99-490 |
2.45e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.26 E-value: 2.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 99 DSRSVKVSQLKNTIKSLKQQNK-QVEHQLEEEKKANNEKQKAErELEVQIQRLNIQKGKLNTDLYHTKRSLRYFEEESKD 177
Cdd:pfam15921 422 DDRNMEVQRLEALLKAMKSECQgQMERQMAAIQGKNESLEKVS-SLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSD 500
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 178 LAVRLQhslqrkgELERALSAVTATQKKkaerqFSSRSKARMEwKLEQSMREQALLKAQLTQLkESLKEVQLERDEYAEH 257
Cdd:pfam15921 501 LTASLQ-------EKERAIEATNAEITK-----LRSRVDLKLQ-ELQHLKNEGDHLRNVQTEC-EALKLQMAEKDKVIEI 566
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 258 LKgerarwqQRMRKMSQEVCSLKKEKKHDKYRVEKLERSLSKLKHQMAeplppeppavpsevELQHLRKELERVAGELQA 337
Cdd:pfam15921 567 LR-------QQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQ--------------EFKILKDKKDAKIRELEA 625
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 338 QVE--YNQRISLLNEGQKERLREQEErlqeqqerlpeQEERLQQLAEPQNSFKELNN--ENKSVLQ--LEQQVKELQEKL 411
Cdd:pfam15921 626 RVSdlELEKVKLVNAGSERLRAVKDI-----------KQERDQLLNEVKTSRNELNSlsEDYEVLKrnFRNKSEEMETTT 694
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1370466511 412 GKERLEAASQQKQQLTAQLSLMALPGegdGGGHLDSEGEEAPRPIPSIPQDLESREAMVAFFKSAGASAQEKQAQLQEQ 490
Cdd:pfam15921 695 NKLKMQLKSAQSELEQTRNTLKSMEG---SDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEE 770
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
99-512 |
2.63e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.08 E-value: 2.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 99 DSRSVKVSQLKNTIKSLKQQNKQVEHQLEEEKKANNEKQKAERELEVQIQRLNIQKGKLNTDLYHTKRSLRYFEEESKDL 178
Cdd:COG1196 382 EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 179 AVRLQHSLQRKGELERALSAVTATQKKKAERQFSSRSKARMEWKLEQSMREQALLKAQ--LTQLKESLKEVQLERDEYAE 256
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLrgLAGAVAVLIGVEAAYEAALE 541
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 257 HLKGERARWQQRMRKMSQEVC--SLKKEKK-------HDKYRVEKLERSLSKLKHQMAEPLPPEPPAVPSEVELQHLRKE 327
Cdd:COG1196 542 AALAAALQNIVVEDDEVAAAAieYLKAAKAgratflpLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDT 621
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 328 L---------ERVAGELQAQVEYNQRISLLNEGQKERLREQEERLQEQQERLPEQEERLQQLAEPQNSFKELNNENKSVL 398
Cdd:COG1196 622 LlgrtlvaarLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLA 701
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 399 QLEQQVKELQEKLGKERLEAASQQKQQLTAQLSLMALPGEGDGGGHLDSEGEEAPRPIPSIPQDLESREAMVAFFKSAGA 478
Cdd:COG1196 702 EEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGP 781
|
410 420 430
....*....|....*....|....*....|....*..
gi 1370466511 479 ---SAQEKQAQLQEQSGFMDhlEEKADLSElvEKEEL 512
Cdd:COG1196 782 vnlLAIEEYEELEERYDFLS--EQREDLEE--ARETL 814
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
108-419 |
3.10e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.82 E-value: 3.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 108 LKNTIKSLKQQNKQVEHQLEEEKKANNEKQKAERELEVQIQRLNiqkgKLNTDLYHTKRSLRYFEEESKdlavrlqhslq 187
Cdd:PRK03918 167 LGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREIN----EISSELPELREELEKLEKEVK----------- 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 188 rkgELERALSAVTATQKKKAERQfssRSKARMEWKLEQSMREQALLKAQLTQLKE---SLKEVQLERDEYAEhLKGERAR 264
Cdd:PRK03918 232 ---ELEELKEEIEELEKELESLE---GSKRKLEEKIRELEERIEELKKEIEELEEkvkELKELKEKAEEYIK-LSEFYEE 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 265 WQQRMRKMSQEVCSLKKEKKHDKYRVEKLERSLSKLKhqmaeplppeppavpsevELQHLRKELERVAGELQAQVE-YNQ 343
Cdd:PRK03918 305 YLDELREIEKRLSRLEEEINGIEERIKELEEKEERLE------------------ELKKKLKELEKRLEELEERHElYEE 366
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1370466511 344 RISLLNEGQKERLREQEERLQEQQERLPEQEERLQQLAEpqnsfkELNNENKSVLQLEQQVKELQEKLgkERLEAA 419
Cdd:PRK03918 367 AKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEE------EISKITARIGELKKEIKELKKAI--EELKKA 434
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
186-429 |
4.28e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.49 E-value: 4.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 186 LQRKGELERALSAVTATQKKKAErQFSSRSKARMEWKLEQSMREQALLKAQLTQLKESLKEVQLERDEYAEHLKGERARW 265
Cdd:pfam17380 312 VERRRKLEEAEKARQAEMDRQAA-IYAEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMRELERLQMERQQK 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 266 QQRMRkmsQEVCSLKKEKKHDKYRveklERSLSKLKHQMAEPLPPEPPAVPSEVEL--QHLRKELERVAGELQAQVEYNQ 343
Cdd:pfam17380 391 NERVR---QELEAARKVKILEEER----QRKIQQQKVEMEQIRAEQEEARQREVRRleEERAREMERVRLEEQERQQQVE 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 344 RISLLNEGQKerlreqeerlQEQQERlpEQEERLQQLAEPQNSF---KELnNENKSVLQLEQQVKELQEKLGKERLEAAS 420
Cdd:pfam17380 464 RLRQQEEERK----------RKKLEL--EKEKRDRKRAEEQRRKileKEL-EERKQAMIEEERKRKLLEKEMEERQKAIY 530
|
....*....
gi 1370466511 421 QQKQQLTAQ 429
Cdd:pfam17380 531 EEERRREAE 539
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
156-417 |
4.75e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.00 E-value: 4.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 156 KLNTDLYhtkrslRYFEEESKDLAVRLQHSLQRkgeleralsavTATQKKKAERQfSSRSKARMEWKleQSMREQAL--- 232
Cdd:PHA02562 170 KLNKDKI------RELNQQIQTLDMKIDHIQQQ-----------IKTYNKNIEEQ-RKKNGENIARK--QNKYDELVeea 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 233 --LKAQLTQLKESLKEVQLERDEYAEHLKgeraRWQQRMRKMSQEVCSLKKE----KKHD-----KYRVEKLERSLSKLK 301
Cdd:PHA02562 230 ktIKAEIEELTDELLNLVMDIEDPSAALN----KLNTAAAKIKSKIEQFQKVikmyEKGGvcptcTQQISEGPDRITKIK 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 302 HQMaeplppeppavpseVELQH-LRKELErvagelqAQVEYNQRISLLNEGQKERLREQEERLQEQQERLPEQEERLQQL 380
Cdd:PHA02562 306 DKL--------------KELQHsLEKLDT-------AIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVK 364
|
250 260 270
....*....|....*....|....*....|....*..
gi 1370466511 381 AEPQNSFKELNNENKSVLQLEQQVKELQEKLGKERLE 417
Cdd:PHA02562 365 AAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
216-432 |
8.64e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 39.23 E-value: 8.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 216 KARMEWKLEQSMREQALLKAQLTQLKESLKEVQLERDEY-AEH----LKGERARWQQRMRKMSQEVCSLKKEKkhdkyrv 290
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFrQKNglvdLSEEAKLLLQQLSELESQLAEARAEL------- 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 291 EKLERSLSKLKHQMAEPLPPEPPAVPSEVeLQHLRKELERVAGELQAQV-----EYNQRISLLNEGQKERLREQEERLQE 365
Cdd:COG3206 236 AEAEARLAALRAQLGSGPDALPELLQSPV-IQQLRAQLAELEAELAELSarytpNHPDVIALRAQIAALRAQLQQEAQRI 314
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1370466511 366 QQERLPEQEERLQQLAEPQNSFKELNNENKSVLQLEQQVKELQEKL--GKERLEAASQQKQQLTAQLSL 432
Cdd:COG3206 315 LASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVevARELYESLLQRLEEARLAEAL 383
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
99-329 |
8.71e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 39.23 E-value: 8.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 99 DSRSVKVSQLKNTIKSLKQQNKQVEHQLEEekkannekqkAERELEVqiqrlniqkgklntdlyhtkrslryFEEESK-- 176
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEE----------AEAALEE-------------------------FRQKNGlv 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 177 DLAVRLQHSLQRKGELERALSAVTATQKKKAERQFSSRSKARMEWKLEQSMREQALLKAQLTQLKESLKEVQLERDEY-A 255
Cdd:COG3206 209 DLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYtP 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370466511 256 EH-----LKGERARWQQRMRKMSQEVC-SLKKEKKHDKYRVEKLERSLSKLKHQMAEPLPPeppavpsEVELQHLRKELE 329
Cdd:COG3206 289 NHpdviaLRAQIAALRAQLQQEAQRILaSLEAELEALQAREASLQAQLAQLEARLAELPEL-------EAELRRLEREVE 361
|
|
| |
