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Conserved domains on  [gi|1720375252|ref|XP_030103123|]
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cell division cycle protein 20 homolog B isoform X8 [Mus musculus]

Protein Classification

WD40 repeat domain-containing protein( domain architecture ID 11455410)

WD40 repeat domain-containing protein similar to proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly

CATH:  2.130.10.10
PubMed:  10322433|8090199
SCOP:  4002744

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
216-452 2.80e-20

WD40 repeat [General function prediction only];


:

Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 93.05  E-value: 2.80e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 216 LVAVALGTSVYIWNGQNHSWIENIDLSVccHYVSSVTWMREGSCLAVGTSEGEVQLWDAITKKQLRNLHGHLSVVGALSW 295
Cdd:COG2319    93 LASASADGTVRLWDLATGLLLRTLTGHT--GAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTGHSGAVTSVAF 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 296 NH--CTLSSGSRLGRVHHHDVRVAQhRVGTLY-HKEAVCSLKWSPDGRLLSSGCNDGLLTIWphDPGAGVQGLPLKViPQ 372
Cdd:COG2319   171 SPdgKLLASGSDDGTVRLWDLATGK-LLRTLTgHTGAVRSVAFSPDGKLLASGSADGTVRLW--DLATGKLLRTLTG-HS 246

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 373 STAVKLAFSRtplpvlllgtlqamewcpwQSEVLAVGGGvkDGCLHVLDINTGKNIQTPSTQSQ-ICSLIWLPKTKEIAT 451
Cdd:COG2319   247 GSVRSVAFSP-------------------DGRLLASGSA--DGTVRLWDLATGELLRTLTGHSGgVNSVAFSPDGKLLAS 305


                  .
gi 1720375252 452 G 452
Cdd:COG2319   306 G 306
 
Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
216-452 2.80e-20

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 93.05  E-value: 2.80e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 216 LVAVALGTSVYIWNGQNHSWIENIDLSVccHYVSSVTWMREGSCLAVGTSEGEVQLWDAITKKQLRNLHGHLSVVGALSW 295
Cdd:COG2319    93 LASASADGTVRLWDLATGLLLRTLTGHT--GAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTGHSGAVTSVAF 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 296 NH--CTLSSGSRLGRVHHHDVRVAQhRVGTLY-HKEAVCSLKWSPDGRLLSSGCNDGLLTIWphDPGAGVQGLPLKViPQ 372
Cdd:COG2319   171 SPdgKLLASGSDDGTVRLWDLATGK-LLRTLTgHTGAVRSVAFSPDGKLLASGSADGTVRLW--DLATGKLLRTLTG-HS 246

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 373 STAVKLAFSRtplpvlllgtlqamewcpwQSEVLAVGGGvkDGCLHVLDINTGKNIQTPSTQSQ-ICSLIWLPKTKEIAT 451
Cdd:COG2319   247 GSVRSVAFSP-------------------DGRLLASGSA--DGTVRLWDLATGELLRTLTGHSGgVNSVAFSPDGKLLAS 305


                  .
gi 1720375252 452 G 452
Cdd:COG2319   306 G 306
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 209-452 9.60e-16

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 77.76  E-value: 9.60e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 209 LDWSSQN--LVAVALGTSVYIWNgqnhsWIENIDLSVCC-HY--VSSVTWMREGSCLAVGTSEGEVQLWDAITKKQLRNL 283
Cdd:cd00200    15 VAFSPDGklLATGSGDGTIKVWD-----LETGELLRTLKgHTgpVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 284 HGHLSVVGALSWNHCT--LSSGSRLGRVHHHDVRVAQHRVGTLYHKEAVCSLKWSPDGRLLSSGCNDGLLTIWphdpgAG 361
Cdd:cd00200    90 TGHTSYVSSVAFSPDGriLSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW-----DL 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 362 VQGLPLKVIPQSTavklafsrtplpvlllGTLQAMEWCPwQSEVLAVGGGvkDGCLHVLDINTGKNIQT-PSTQSQICSL 440
Cdd:cd00200   165 RTGKCVATLTGHT----------------GEVNSVAFSP-DGEKLLSSSS--DGTIKLWDLSTGKCLGTlRGHENGVNSV 225

                         250
                  ....*....|..
gi 1720375252 441 IWLPKTKEIATG 452
Cdd:cd00200   226 AFSPDGYLLASG 237
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 326-354 3.52e-05

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 40.76  E-value: 3.52e-05
                           10        20
                   ....*....|....*....|....*....
gi 1720375252  326 HKEAVCSLKWSPDGRLLSSGCNDGLLTIW 354
Cdd:smart00320  11 HTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
WD40 pfam00400
WD domain, G-beta repeat;
326-354 1.26e-04

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 39.25  E-value: 1.26e-04
                          10        20
                  ....*....|....*....|....*....
gi 1720375252 326 HKEAVCSLKWSPDGRLLSSGCNDGLLTIW 354
Cdd:pfam00400  10 HTGSVTSLAFSPDGKLLASGSDDGTVKVW 38
 
Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
216-452 2.80e-20

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 93.05  E-value: 2.80e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 216 LVAVALGTSVYIWNGQNHSWIENIDLSVccHYVSSVTWMREGSCLAVGTSEGEVQLWDAITKKQLRNLHGHLSVVGALSW 295
Cdd:COG2319    93 LASASADGTVRLWDLATGLLLRTLTGHT--GAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTGHSGAVTSVAF 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 296 NH--CTLSSGSRLGRVHHHDVRVAQhRVGTLY-HKEAVCSLKWSPDGRLLSSGCNDGLLTIWphDPGAGVQGLPLKViPQ 372
Cdd:COG2319   171 SPdgKLLASGSDDGTVRLWDLATGK-LLRTLTgHTGAVRSVAFSPDGKLLASGSADGTVRLW--DLATGKLLRTLTG-HS 246

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 373 STAVKLAFSRtplpvlllgtlqamewcpwQSEVLAVGGGvkDGCLHVLDINTGKNIQTPSTQSQ-ICSLIWLPKTKEIAT 451
Cdd:COG2319   247 GSVRSVAFSP-------------------DGRLLASGSA--DGTVRLWDLATGELLRTLTGHSGgVNSVAFSPDGKLLAS 305


                  .
gi 1720375252 452 G 452
Cdd:COG2319   306 G 306
WD40 COG2319
WD40 repeat [General function prediction only];
207-452 3.51e-19

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 89.59  E-value: 3.51e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 207 NTLDWS--SQNLVAVALGTSVYIWNGQNHSWIENIDLSVccHYVSSVTWMREGSCLAVGTSEGEVQLWDAITKKQLRNLH 284
Cdd:COG2319   166 TSVAFSpdGKLLASGSDDGTVRLWDLATGKLLRTLTGHT--GAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLRTLT 243

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 285 GHLSVVGALSWNH--CTLSSGSRLGRVHHHDVRvAQHRVGTL-YHKEAVCSLKWSPDGRLLSSGCNDGLLTIWPHDPGAG 361
Cdd:COG2319   244 GHSGSVRSVAFSPdgRLLASGSADGTVRLWDLA-TGELLRTLtGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLATGKL 322

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 362 VQGLPLKVIPQSTavkLAFSRtplpvlllgtlqamewcpwQSEVLAVGGGvkDGCLHVLDINTGKNIQTPST-QSQICSL 440
Cdd:COG2319   323 LRTLTGHTGAVRS---VAFSP-------------------DGKTLASGSD--DGTVRLWDLATGELLRTLTGhTGAVTSV 378

                         250
                  ....*....|..
gi 1720375252 441 IWLPKTKEIATG 452
Cdd:COG2319   379 AFSPDGRTLASG 390
WD40 COG2319
WD40 repeat [General function prediction only];
209-452 2.87e-17

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 83.81  E-value: 2.87e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 209 LDWSSQNLVAVALGTSVYIWNGQNHSWIENIDLSVCCHYVSSVTWMREGSCLAVGTSEGEVQLWDAITKKQLRNLHGHLS 288
Cdd:COG2319    42 LAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAAVLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTG 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 289 VVGALSW--NHCTLSSGSRLGRVHHHDVRVAQhRVGTLY-HKEAVCSLKWSPDGRLLSSGCNDGLLTIWphDPGAGVQGL 365
Cdd:COG2319   122 AVRSVAFspDGKTLASGSADGTVRLWDLATGK-LLRTLTgHSGAVTSVAFSPDGKLLASGSDDGTVRLW--DLATGKLLR 198

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 366 PLKViPQSTAVKLAFSRtplpvlllgtlqamewcpwQSEVLAVGGGvkDGCLHVLDINTGKNIQT-PSTQSQICSLIWLP 444
Cdd:COG2319   199 TLTG-HTGAVRSVAFSP-------------------DGKLLASGSA--DGTVRLWDLATGKLLRTlTGHSGSVRSVAFSP 256


                  ....*...
gi 1720375252 445 KTKEIATG 452
Cdd:COG2319   257 DGRLLASG 264
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 209-452 9.60e-16

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 77.76  E-value: 9.60e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 209 LDWSSQN--LVAVALGTSVYIWNgqnhsWIENIDLSVCC-HY--VSSVTWMREGSCLAVGTSEGEVQLWDAITKKQLRNL 283
Cdd:cd00200    15 VAFSPDGklLATGSGDGTIKVWD-----LETGELLRTLKgHTgpVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 284 HGHLSVVGALSWNHCT--LSSGSRLGRVHHHDVRVAQHRVGTLYHKEAVCSLKWSPDGRLLSSGCNDGLLTIWphdpgAG 361
Cdd:cd00200    90 TGHTSYVSSVAFSPDGriLSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW-----DL 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 362 VQGLPLKVIPQSTavklafsrtplpvlllGTLQAMEWCPwQSEVLAVGGGvkDGCLHVLDINTGKNIQT-PSTQSQICSL 440
Cdd:cd00200   165 RTGKCVATLTGHT----------------GEVNSVAFSP-DGEKLLSSSS--DGTIKLWDLSTGKCLGTlRGHENGVNSV 225

                         250
                  ....*....|..
gi 1720375252 441 IWLPKTKEIATG 452
Cdd:cd00200   226 AFSPDGYLLASG 237
WD40 COG2319
WD40 repeat [General function prediction only];
207-354 3.97e-14

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 74.18  E-value: 3.97e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 207 NTLDWSSQN--LVAVALGTSVYIWNGQNHSWIENidLSVCCHYVSSVTWMREGSCLAVGTSEGEVQLWDAITKKQLRNLH 284
Cdd:COG2319   250 RSVAFSPDGrlLASGSADGTVRLWDLATGELLRT--LTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLT 327

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720375252 285 GHLSVVGALSW--NHCTLSSGSRLGRVHHHDVRVAQHRVGTLYHKEAVCSLKWSPDGRLLSSGCNDGLLTIW 354
Cdd:COG2319   328 GHTGAVRSVAFspDGKTLASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFSPDGRTLASGSADGTVRLW 399
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 207-354 7.56e-13

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 68.90  E-value: 7.56e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 207 NTLDWSSQN-LVAVALG-TSVYIWNGQNHSWIENIDLSVCchYVSSVTWMREGSCLAVGTSEGEVQLWDAITKKQLRNLH 284
Cdd:cd00200   139 NSVAFSPDGtFVASSSQdGTIKLWDLRTGKCVATLTGHTG--EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR 216

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720375252 285 GHLSVVGALSWNHCT--LSSGSRLGRVHHHDVRvAQHRVGTLY-HKEAVCSLKWSPDGRLLSSGCNDGLLTIW 354
Cdd:cd00200   217 GHENGVNSVAFSPDGylLASGSEDGTIRVWDLR-TGECVQTLSgHTNSVTSLAWSPDGKRLASGSADGTIRIW 288
WD40 COG2319
WD40 repeat [General function prediction only];
248-452 3.10e-11

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 65.32  E-value: 3.10e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 248 VSSVTWMREGSCLAVGTSEGEVQLWDAITKKQLRNLHGHLSVVG--ALSWNHCTLSSGSRLGRVHHHDVRVAQHRVGTLY 325
Cdd:COG2319    39 VASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAAVLsvAFSPDGRLLASASADGTVRLWDLATGLLLRTLTG 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 326 HKEAVCSLKWSPDGRLLSSGCNDGLLTIWphDPGAGVQGLPLKViPQSTAVKLAFSRtplpvlllgtlqamewcpwQSEV 405
Cdd:COG2319   119 HTGAVRSVAFSPDGKTLASGSADGTVRLW--DLATGKLLRTLTG-HSGAVTSVAFSP-------------------DGKL 176

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1720375252 406 LAVGGGvkDGCLHVLDINTGKNIQT-PSTQSQICSLIWLPKTKEIATG 452
Cdd:COG2319   177 LASGSD--DGTVRLWDLATGKLLRTlTGHTGAVRSVAFSPDGKLLASG 222
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 246-463 2.35e-10

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 61.58  E-value: 2.35e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 246 HYVSSVTWMREGSCLAVGTSEGEVQLWDAITKKQLRNLHGHLSVVGALSW--NHCTLSSGSRlgrvhHHDVRV----AQH 319
Cdd:cd00200    10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAsaDGTYLASGSS-----DKTIRLwdleTGE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 320 RVGTLY-HKEAVCSLKWSPDGRLLSSGCNDGLLTIWPhdpgaGVQGLPLKVIP--QSTAVKLAFSRTplpvlllGTLqam 396
Cdd:cd00200    85 CVRTLTgHTSYVSSVAFSPDGRILSSSSRDKTIKVWD-----VETGKCLTTLRghTDWVNSVAFSPD-------GTF--- 149

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720375252 397 ewcpwqsevlaVGGGVKDGCLHVLDINTGKNIQT-PSTQSQICSLIWLPKTKEIATgqGAPKNDVALW 463
Cdd:cd00200   150 -----------VASSSQDGTIKLWDLRTGKCVATlTGHTGEVNSVAFSPDGEKLLS--SSSDGTIKLW 204
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 205-366 2.11e-09

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 58.50  E-value: 2.11e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 205 YLNTLDWSSQNLVAVALGT--SVYIWNgqnhswienIDLSVCCH-------YVSSVTWMREGSCLAVGTSEGEVQLWDAI 275
Cdd:cd00200    95 YVSSVAFSPDGRILSSSSRdkTIKVWD---------VETGKCLTtlrghtdWVNSVAFSPDGTFVASSSQDGTIKLWDLR 165

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 276 TKKQLRNLHGHLSVVGALSWNH--CTLSSGSRLGRVHHHDVRVAQHrVGTL-YHKEAVCSLKWSPDGRLLSSGCNDGLLT 352
Cdd:cd00200   166 TGKCVATLTGHTGEVNSVAFSPdgEKLLSSSSDGTIKLWDLSTGKC-LGTLrGHENGVNSVAFSPDGYLLASGSEDGTIR 244

                         170
                  ....*....|....
gi 1720375252 353 IWPHDPGAGVQGLP 366
Cdd:cd00200   245 VWDLRTGECVQTLS 258
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 326-354 3.52e-05

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 40.76  E-value: 3.52e-05
                           10        20
                   ....*....|....*....|....*....
gi 1720375252  326 HKEAVCSLKWSPDGRLLSSGCNDGLLTIW 354
Cdd:smart00320  11 HTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
WD40 pfam00400
WD domain, G-beta repeat;
326-354 1.26e-04

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 39.25  E-value: 1.26e-04
                          10        20
                  ....*....|....*....|....*....
gi 1720375252 326 HKEAVCSLKWSPDGRLLSSGCNDGLLTIW 354
Cdd:pfam00400  10 HTGSVTSLAFSPDGKLLASGSDDGTVKVW 38
WD40 COG2319
WD40 repeat [General function prediction only];
260-452 3.74e-04

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 42.98  E-value: 3.74e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 260 LAVGTSEGEVQLWDAITKKQLRNLHGHLSVVGALSWNHC--TLSSGSRLGRVHHHDVRVAQHRVGTLYHKEAVCSLKWSP 337
Cdd:COG2319     9 LAAASADLALALLAAALGALLLLLLGLAAAVASLAASPDgaRLAAGAGDLTLLLLDAAAGALLATLLGHTAAVLSVAFSP 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 338 DGRLLSSGCNDGLLTIWPHDPGAGVQGLplkVIPQSTAVKLAFSRtplpvlllgtlqamewcpwQSEVLAVGGGvkDGCL 417
Cdd:COG2319    89 DGRLLASASADGTVRLWDLATGLLLRTL---TGHTGAVRSVAFSP-------------------DGKTLASGSA--DGTV 144

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1720375252 418 HVLDINTGKNIQTPST-QSQICSLIWLPKTKEIATG 452
Cdd:COG2319   145 RLWDLATGKLLRTLTGhSGAVTSVAFSPDGKLLASG 180
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 326-463 7.35e-03

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 38.47  E-value: 7.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720375252 326 HKEAVCSLKWSPDGRLLSSGCNDGLLTIWPHDPGAGVQGLplkvipqstavklafsrtplpVLLLGTLQAMEWCPWQSEV 405
Cdd:cd00200     8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL---------------------KGHTGPVRDVAASADGTYL 66

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1720375252 406 LAVGggvKDGCLHVLDINTGKNIQT-PSTQSQICSLIWLPKTKEIATGQGApkNDVALW 463
Cdd:cd00200    67 ASGS---SDKTIRLWDLETGECVRTlTGHTSYVSSVAFSPDGRILSSSSRD--KTIKVW 120
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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