NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1720386658|ref|XP_030104877|]
View 

YEATS domain-containing protein 2 isoform X2 [Mus musculus]

Protein Classification

YEATS_YEATS2_like and PRK07003 domain-containing protein( domain architecture ID 13014254)

YEATS_YEATS2_like and PRK07003 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
YEATS_YEATS2_like cd16907
YEATS domain found in YEATS2 and Drosophila D12; YEATS2 is a YEATS domain reader protein with ...
 206-329 4.98e-85

YEATS domain found in YEATS2 and Drosophila D12; YEATS2 is a YEATS domain reader protein with a preference for recognition of histone H3 crotonylation on lysine 27 (H3K27crHistone crotonylation upregulates gene expression in an AF9-dependent manner. DNA regulation by chromatin thru histone post-translational modification and other mechanism involves complexes with write, eraser and reader functions. YEATS domains act as readers of the chromatin state, and stimulate transcriptional activity, thru preferential interactions with crotonylated lysines on histones. The YEATS family is named for several family members: 'YNK7', 'ENL', 'AF-9', and 'TFIIF small subunit', and also contains the GAS41 protein.


:

Pssm-ID: 341126  Cd Length: 123  Bit Score: 272.52  E-value: 4.98e-85
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720386658  206 KTIVVGNVSKYIPPDKREeNDQSTHKWMVYVRGSRREPSINHFVKKVWFFLHPSYKPNDLVEVREPPFHLTRRGWGEFPV 285
Cdd:cd16907      1 KRIIVGNVSKYIPPDERE-DDKSTHKWMVYVRGPPEDPDIDHFVKKVRFFLHPSYAPNDVVEVTKPPFHLTRRGWGEFPV 79

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1720386658  286 RVQVHFKDSQNKRIDIIHNLKLDRTYTGLQTLGAETVVDVELHR 329
Cdd:cd16907     80 RVQLHFKDPRNKPVDIIHNLKLDRTYTGLQTLGAETVVDVELDR 123
PRK07003 super family cl35530
DNA polymerase III subunit gamma/tau;
884-1120 9.60e-04

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK07003:

Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 43.68  E-value: 9.60e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720386658  884 ISGQKTTLFTQAATAGQASLLKLPDntlksvpaapQLAKPGTTMLR-------VAGGVITAAPSPAVAFSANGAvhqseg 956
Cdd:PRK07003   319 LSPEQVQLFYQIATVGRGELGLAPD----------EYAGFTMTLLRmlafepaVTGGGAPGGGVPARVAGAVPA------ 382

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720386658  957 STPVSSSVGSIIKTPGQPQVCVSQATMATckgPAAVAGTAASLVSAPSSISGKATVSGLLKVHSAQSSPQQAvlTIPSQL 1036
Cdd:PRK07003   383 PGARAAAAVGASAVPAVTAVTGAAGAALA---PKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPA--KANARA 457

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720386658 1037 KPLSINTSGGVQTVLMPVNKVVqsfstsklPTTVLPISVPNQAAPSSAPVAIAKVKTEPETPGPNCISQENQVAVKTEES 1116
Cdd:PRK07003   458 SADSRCDERDAQPPADSGSASA--------PASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPA 529


                   ....
gi 1720386658 1117 SELS 1120
Cdd:PRK07003   530 PEAR 533
 
Name Accession Description Interval E-value
YEATS_YEATS2_like cd16907
YEATS domain found in YEATS2 and Drosophila D12; YEATS2 is a YEATS domain reader protein with ...
 206-329 4.98e-85

YEATS domain found in YEATS2 and Drosophila D12; YEATS2 is a YEATS domain reader protein with a preference for recognition of histone H3 crotonylation on lysine 27 (H3K27crHistone crotonylation upregulates gene expression in an AF9-dependent manner. DNA regulation by chromatin thru histone post-translational modification and other mechanism involves complexes with write, eraser and reader functions. YEATS domains act as readers of the chromatin state, and stimulate transcriptional activity, thru preferential interactions with crotonylated lysines on histones. The YEATS family is named for several family members: 'YNK7', 'ENL', 'AF-9', and 'TFIIF small subunit', and also contains the GAS41 protein.


Pssm-ID: 341126  Cd Length: 123  Bit Score: 272.52  E-value: 4.98e-85
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720386658  206 KTIVVGNVSKYIPPDKREeNDQSTHKWMVYVRGSRREPSINHFVKKVWFFLHPSYKPNDLVEVREPPFHLTRRGWGEFPV 285
Cdd:cd16907      1 KRIIVGNVSKYIPPDERE-DDKSTHKWMVYVRGPPEDPDIDHFVKKVRFFLHPSYAPNDVVEVTKPPFHLTRRGWGEFPV 79

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1720386658  286 RVQVHFKDSQNKRIDIIHNLKLDRTYTGLQTLGAETVVDVELHR 329
Cdd:cd16907     80 RVQLHFKDPRNKPVDIIHNLKLDRTYTGLQTLGAETVVDVELDR 123
YEATS pfam03366
YEATS family; We have named this family the YEATS family, after `YNK7', `ENL', `AF-9', and ...
 229-308 1.96e-35

YEATS family; We have named this family the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit'. This family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity


Pssm-ID: 460899  Cd Length: 80  Bit Score: 129.49  E-value: 1.96e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720386658  229 THKWMVYVRGSRREPsINHFVKKVWFFLHPSYkPNDLVEVREPPFHLTRRGWGEFPVRVQVHFKDSQNKRIDIIHNLKLD 308
Cdd:pfam03366    2 THKWTVYVRGLDNED-ISYFIKKVVFKLHPSF-ANPVRVVKKPPFEVTETGWGEFEIRIKIYFKDKDEKPVTIYHDLKLH 79
TFG3 COG5033
Transcription initiation factor IIF, auxiliary subunit [Transcription];
199-334 1.32e-15

Transcription initiation factor IIF, auxiliary subunit [Transcription];


Pssm-ID: 227366 [Multi-domain]  Cd Length: 225  Bit Score: 77.54  E-value: 1.32e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720386658  199 TSRLFVKKTIVVGNVsKYIPPDKREENDQsTHKWMVYVRGSRREpSINHFVKKVWFFLHPSYkPNDLVEVREPPFHLTRR 278
Cdd:COG5033      7 TERLKTQRVIIPGEA-KPLGNEERFPVRH-THIWLVFVRAPGKE-DIATIVKKVIFKLHPTF-SNPTRTIESPPFEIKET 82

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1720386658  279 GWGEFPVRVQVHFKDSQN-KRIDIIHNLKLDrtytglqTLGAETVVDVELHRHSLGE 334
Cdd:COG5033     83 GWGEFDIQIKIFFAEKAGeKTIHFYLHFGDE-------PYAVDEPVDIPVNRPDLTS 132
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
884-1120 9.60e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 43.68  E-value: 9.60e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720386658  884 ISGQKTTLFTQAATAGQASLLKLPDntlksvpaapQLAKPGTTMLR-------VAGGVITAAPSPAVAFSANGAvhqseg 956
Cdd:PRK07003   319 LSPEQVQLFYQIATVGRGELGLAPD----------EYAGFTMTLLRmlafepaVTGGGAPGGGVPARVAGAVPA------ 382

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720386658  957 STPVSSSVGSIIKTPGQPQVCVSQATMATckgPAAVAGTAASLVSAPSSISGKATVSGLLKVHSAQSSPQQAvlTIPSQL 1036
Cdd:PRK07003   383 PGARAAAAVGASAVPAVTAVTGAAGAALA---PKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPA--KANARA 457

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720386658 1037 KPLSINTSGGVQTVLMPVNKVVqsfstsklPTTVLPISVPNQAAPSSAPVAIAKVKTEPETPGPNCISQENQVAVKTEES 1116
Cdd:PRK07003   458 SADSRCDERDAQPPADSGSASA--------PASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPA 529


                   ....
gi 1720386658 1117 SELS 1120
Cdd:PRK07003   530 PEAR 533
 
Name Accession Description Interval E-value
YEATS_YEATS2_like cd16907
YEATS domain found in YEATS2 and Drosophila D12; YEATS2 is a YEATS domain reader protein with ...
 206-329 4.98e-85

YEATS domain found in YEATS2 and Drosophila D12; YEATS2 is a YEATS domain reader protein with a preference for recognition of histone H3 crotonylation on lysine 27 (H3K27crHistone crotonylation upregulates gene expression in an AF9-dependent manner. DNA regulation by chromatin thru histone post-translational modification and other mechanism involves complexes with write, eraser and reader functions. YEATS domains act as readers of the chromatin state, and stimulate transcriptional activity, thru preferential interactions with crotonylated lysines on histones. The YEATS family is named for several family members: 'YNK7', 'ENL', 'AF-9', and 'TFIIF small subunit', and also contains the GAS41 protein.


Pssm-ID: 341126  Cd Length: 123  Bit Score: 272.52  E-value: 4.98e-85
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720386658  206 KTIVVGNVSKYIPPDKREeNDQSTHKWMVYVRGSRREPSINHFVKKVWFFLHPSYKPNDLVEVREPPFHLTRRGWGEFPV 285
Cdd:cd16907      1 KRIIVGNVSKYIPPDERE-DDKSTHKWMVYVRGPPEDPDIDHFVKKVRFFLHPSYAPNDVVEVTKPPFHLTRRGWGEFPV 79

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1720386658  286 RVQVHFKDSQNKRIDIIHNLKLDRTYTGLQTLGAETVVDVELHR 329
Cdd:cd16907     80 RVQLHFKDPRNKPVDIIHNLKLDRTYTGLQTLGAETVVDVELDR 123
YEATS cd16887
YEATS domain family, chromatin reader proteins; The YEATS family is named for several family ...
 206-330 2.46e-42

YEATS domain family, chromatin reader proteins; The YEATS family is named for several family members: 'YNK7', 'ENL', 'AF-9', and 'TFIIF small subunit', and also contains the GAS41 protein, YEATS2, Drosophila D12, and others. DNA regulation by chromatin through histone post-translational modification and other mechanisms involves complexes with write, eraser and reader functions. YEATS domains act as readers of the chromatin state and stimulates transcriptional activity through preferential interactions with crotonylated lysines on histones.


Pssm-ID: 341123  Cd Length: 120  Bit Score: 150.89  E-value: 2.46e-42
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720386658  206 KTIVVGNVSKYIPPDKREENdqsTHKWMVYVRGSRREPsINHFVKKVWFFLHPSYKPNdLVEVREPPFHLTRRGWGEFPV 285
Cdd:cd16887      1 KPIVIGNVAEKIPKPEPDDN---THKWTVYVRSPTNED-LSSFIKKVTFKLHPSFPNP-VRVVTDPPFEVEEVGWGEFPI 75

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1720386658  286 RVQVHFKDSQNKRIDIIHNLKLDRTYTGLQTLGAETVVDVELHRH 330
Cdd:cd16887     76 EIKIYFKDSNEKPVTLSHFLKLHPDGSPLKKPVVVSEKYDEIVFR 120
YEATS pfam03366
YEATS family; We have named this family the YEATS family, after `YNK7', `ENL', `AF-9', and ...
 229-308 1.96e-35

YEATS family; We have named this family the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit'. This family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity


Pssm-ID: 460899  Cd Length: 80  Bit Score: 129.49  E-value: 1.96e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720386658  229 THKWMVYVRGSRREPsINHFVKKVWFFLHPSYkPNDLVEVREPPFHLTRRGWGEFPVRVQVHFKDSQNKRIDIIHNLKLD 308
Cdd:pfam03366    2 THKWTVYVRGLDNED-ISYFIKKVVFKLHPSF-ANPVRVVKKPPFEVTETGWGEFEIRIKIYFKDKDEKPVTIYHDLKLH 79
YEATS_TFIID14_like cd16910
YEATS domain found in transcription initiation factor TFIID subunit 14 and similar proteins; ...
 204-307 1.44e-28

YEATS domain found in transcription initiation factor TFIID subunit 14 and similar proteins; YEATS domain containing proteins, which include Transcription initiation factor TFIID subunits 14 and 14b of Arabidopsis, shown to be part of the TFIID general transcriptional regulator complex in a two-hybrid screen. DNA regulation by chromatin thru histone post-translational modification and other mechanism involves complexes with write, eraser and reader functions. YEATS domains act as readers of the chromatin state, and stimulate transcriptional activity, thru preferential interactions with crotonylated lysines on histones. The YEATS family is named for several family members: 'YNK7', 'ENL', 'AF-9', and 'TFIIF small subunit', and also contains the GAS41 protein.


Pssm-ID: 341129  Cd Length: 131  Bit Score: 111.90  E-value: 1.44e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720386658  204 VKKTIVVGNVSKYIPPDKREENdqsTHKWMVYVRGSRREpSINHFVKKVWFFLHPSYkPNDLVEVREPPFHLTRRGWGEF 283
Cdd:cd16910      1 VSVPIVYGSIAFWLGKKADETH---THKWTVYVRGANNE-DLSYFIKKVVFVLHPSF-ANPTRVVTEPPFEVTETGWGEF 75

                           90       100
                   ....*....|....*....|....
gi 1720386658  284 PVRVQVHFKDSQNKRIDIIHNLKL 307
Cdd:cd16910     76 EIGITIHFKDDAEKPVELTHPLKL 99
YEATS_GAS41_like cd16909
YEATS domain found in YEATS domain-containing protein 4 and similar proteins; glioma amplified ...
 206-324 2.13e-27

YEATS domain found in YEATS domain-containing protein 4 and similar proteins; glioma amplified sequence 41 (GAS41, also known as, YEATS domain-containing protein 4, NuMA-binding protein 1 ) is a YEATS domain family protein that is amplified and acts as an oncogene in human glioma. GAS41 is a YEATS domain family protein and has been shown to interact with the general transcription factor TFIIF via the YEATS domain. DNA regulation by chromatin thru histone post-translational modification and other mechanism involves complexes with write, eraser and reader functions. YEATS domains act as readers of the chromatin state, and stimulate transcriptional activity, thru preferential interactions with crotonylated lysines on histones. The YEATS family is named for several family members: 'YNK7', 'ENL', 'AF-9', and 'TFIIF small subunit', and also contains the GAS41 protein.


Pssm-ID: 341128  Cd Length: 137  Bit Score: 108.87  E-value: 2.13e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720386658  206 KTIVVGNVSKYIPPdKREEnDQSTHKWMVYVRGSRREpSINHFVKKVWFFLHPSYkPNDLVEVREPPFHLTRRGWGEFPV 285
Cdd:cd16909      5 KPIVYGNIARYFGK-KREE-DGHTHQWTVYVKPYFNE-DMSTYVKKVQFKLHESY-ANPLRVVTKPPYEVTETGWGEFEI 80

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1720386658  286 RVQVHFKDSQNKRIDIIHNLKLDRTYTGLqTLGAETVVD 324
Cdd:cd16909     81 IIKIFFIDPNERPVTLYHLLKLFQSDTNL-MLGKKTLVS 118
YEATS_Yaf9_like cd16908
YEATS domain found in Yaf9 and similar proteins; Yaf9 is a YEATS domain family protein ...
 204-307 1.83e-23

YEATS domain found in Yaf9 and similar proteins; Yaf9 is a YEATS domain family protein essential in the function the NuA4 histone acetyltransferase complex and the SWR1-C ATP-dependent chromatin remodeling complex. Yaf9 shares structural similarity with histone chaperone Asf1, both exhibit histone H3 and H4 binding in vitro, and evidence supports both play a role in the same histone acetylation mechanism. DNA regulation by chromatin thru histone post-translational modification and other mechanism involves complexes with write, eraser and reader functions. YEATS domains act as readers of the chromatin state, and stimulate transcriptional activity, thru preferential interactions with crotonylated lysines on histones. The YEATS family is named for several family members: `YNK7', `ENL', `AF-9', and `TFIIF small subunit', and also contains the GAS41 protein.


Pssm-ID: 341127  Cd Length: 145  Bit Score: 97.73  E-value: 1.83e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720386658  204 VKKTIVVGNVSKYIPPDKREENDQS-THKWMVYVRGSRREpSINHFVKKVWFFLHPSYK-PNDLVEvrEPPFHLTRRGWG 281
Cdd:cd16908      2 VSRPIVYGNTARPLTPEEKPKAPPDhTHKWTVFVRGPDGE-DLSYFIKKVVFKLHESYPnPNRTIE--KPPFEVTETGWG 78

                           90       100
                   ....*....|....*....|....*..
gi 1720386658  282 EFPVRVQVHFKD-SQNKRIDIIHNLKL 307
Cdd:cd16908     79 EFEIQIKIYFVPeANEKPITLYHMLKL 105
YEATS_AF-9_like cd16906
YEATS domain found in ENL and AF-9-like proteins; Yeast AFF9 is a YEATS domain protein that ...
 229-307 2.20e-17

YEATS domain found in ENL and AF-9-like proteins; Yeast AFF9 is a YEATS domain protein that binds to modified histones, with a preference for crotonyllysine over acetyllysine. Histone crotonylation upregulates gene expression in an AF9-dependent manner. Sub-family also includes eleven-nineteen-leukemia protein ENL, which binds histones H3 and H1. DNA regulation by chromatin through histone post-translational modification and other mechanisms involves complexes with write, eraser and reader functions. YEATS domains act as readers of the chromatin state and stimulates transcriptional activity through preferential interactions with crotonylated lysines on histones. The YEATS family is named for several family members: 'YNK7', 'ENL', 'AF-9', and 'TFIIF small subunit', and also contains the GAS41 protein.


Pssm-ID: 341125  Cd Length: 127  Bit Score: 79.54  E-value: 2.20e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720386658  229 THKWMVYVRGSRREPsINHFVKKVWFFLHPSYKPNDLVeVREPPFHLTRRGWGEFPVRVQVHFKDSQN-KRIDIIHNLKL 307
Cdd:cd16906     21 THDWTVFVRGANGSD-ISHFVEKVVFHLHESFPKPKRV-VKEPPFEVTESGYAGFTLPIEIYFKNKEEpKKVRFEYDLFL 98
TFG3 COG5033
Transcription initiation factor IIF, auxiliary subunit [Transcription];
199-334 1.32e-15

Transcription initiation factor IIF, auxiliary subunit [Transcription];


Pssm-ID: 227366 [Multi-domain]  Cd Length: 225  Bit Score: 77.54  E-value: 1.32e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720386658  199 TSRLFVKKTIVVGNVsKYIPPDKREENDQsTHKWMVYVRGSRREpSINHFVKKVWFFLHPSYkPNDLVEVREPPFHLTRR 278
Cdd:COG5033      7 TERLKTQRVIIPGEA-KPLGNEERFPVRH-THIWLVFVRAPGKE-DIATIVKKVIFKLHPTF-SNPTRTIESPPFEIKET 82

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1720386658  279 GWGEFPVRVQVHFKDSQN-KRIDIIHNLKLDrtytglqTLGAETVVDVELHRHSLGE 334
Cdd:COG5033     83 GWGEFDIQIKIFFAEKAGeKTIHFYLHFGDE-------PYAVDEPVDIPVNRPDLTS 132
YEATS_Taf14_like cd16905
YEATS domain found in Taf14 and similar proteins; Taf14 has been identified as a component of ...
 204-305 6.58e-11

YEATS domain found in Taf14 and similar proteins; Taf14 has been identified as a component of TFIIF and TFIID transcription factor complexes, various chromatin-remodeling complexes (such as SWI/SNF, INO80, and RSC) and the NuA3 histone acetyltransferase complex. DNA regulation by chromatin thru histone post-translational modification and other mechanism involves complexes with write, eraser and reader functions. YEATS domains act as readers of the chromatin state, and stimulate transcriptional activity, thru preferential interactions with crotonylated lysines on histones. Specifically, Taf14 has been show to be a reader of lysine crotonylation, associated with active gene promoters and enhancers and binding acetyllysine on in histone H3. The YEATS family is named for several family members: 'YNK7', 'ENL', 'AF-9', and 'TFIIF small subunit', and also contains the GAS41 protein.


Pssm-ID: 341124  Cd Length: 118  Bit Score: 61.04  E-value: 6.58e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720386658  204 VKKTIVVgNVSKYIPPDKREENDQSTHKW---MVYVRGSRREPSINHFvKKVWFFLHPSY-KPNdlVEVREPPFHLTRRG 279
Cdd:cd16905      1 VKRTIRI-KTQQHILPDVPPVEGFPLRKWsieLVLLDPNGEEVPADIF-DKVTYHLHPTFeNPI--RTFKKPPFRLEEKG 76

                           90       100
                   ....*....|....*....|....*.
gi 1720386658  280 WGEFPVRVQVHFKDSQNKRIdIIHNL 305
Cdd:cd16905     77 WGEFDMKIVLHFLDNGGEFT-ITHDL 101
pYEATS pfam20305
prokaryotic YEATS domain; This entry represents a prokaryotic YEATS domain. pYEATS is fused to ...
 231-305 1.27e-10

prokaryotic YEATS domain; This entry represents a prokaryotic YEATS domain. pYEATS is fused to diverse effector domains, suggesting that the binding to a ligand activates an effector-based response against an invasive threat. It has been predicted to specifically recognize invader-induced modifications of macromolecules by acyl moieties (e.g. phage-encoded acylations of surface polysaccharides) to unleash the fused effectors through a conformational change.


Pssm-ID: 466455  Cd Length: 73  Bit Score: 58.45  E-value: 1.27e-10
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720386658  231 KWMVYVRGSRREPSinhFVKKVWFFLHPSYKPNDL-VEVREPPFHLTRRGWGEFPVRVQVHFKDSQNKRIDiiHNL 305
Cdd:pfam20305    2 DVRLWVDGPDPVLL---LIESVEYTLHPTFPNPVRtVTDRNGNFSLSLSAWGAFTVGAEVEFKDGGEIELE--RYL 72
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
884-1120 9.60e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 43.68  E-value: 9.60e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720386658  884 ISGQKTTLFTQAATAGQASLLKLPDntlksvpaapQLAKPGTTMLR-------VAGGVITAAPSPAVAFSANGAvhqseg 956
Cdd:PRK07003   319 LSPEQVQLFYQIATVGRGELGLAPD----------EYAGFTMTLLRmlafepaVTGGGAPGGGVPARVAGAVPA------ 382

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720386658  957 STPVSSSVGSIIKTPGQPQVCVSQATMATckgPAAVAGTAASLVSAPSSISGKATVSGLLKVHSAQSSPQQAvlTIPSQL 1036
Cdd:PRK07003   383 PGARAAAAVGASAVPAVTAVTGAAGAALA---PKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPA--KANARA 457

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720386658 1037 KPLSINTSGGVQTVLMPVNKVVqsfstsklPTTVLPISVPNQAAPSSAPVAIAKVKTEPETPGPNCISQENQVAVKTEES 1116
Cdd:PRK07003   458 SADSRCDERDAQPPADSGSASA--------PASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPA 529


                   ....
gi 1720386658 1117 SELS 1120
Cdd:PRK07003   530 PEAR 533
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH