|
Name |
Accession |
Description |
Interval |
E-value |
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
154-938 |
0e+00 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 1031.69 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 154 LQTQLKEVLRENDLLRKDVEVKESKLSSSMNSIKTFWSPELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTIQALQ 233
Cdd:pfam10174 1 LQAQLRDLQRENELLRRELDIKESKLGSSMNSIKTFWSPELKKERALRKEEAARISVLKEQYRVTQEENQHLQLTIQALQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 234 DELRIQRDLNQLFQQD--SSSRTGEPCVA--ELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESI 309
Cdd:pfam10174 81 DELRAQRDLNQLLQQDftTSPVDGEDKFStpELTEENFRRLQSEHERQAKELFLLRKTLEEMELRIETQKQTLGARDESI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 310 KKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNMLREEMHRRFENAPDSAKTKALQTVIEMKDS 389
Cdd:pfam10174 161 KKLLEMLQSKGLPKKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELHRRNQLQPDPAKTKALQTVIEMKDT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 390 KISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKVEQLKeelsskdaqgeelkkraaglqseig 469
Cdd:pfam10174 241 KISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKFMKNKIDQLK------------------------- 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 470 qvkQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMA 549
Cdd:pfam10174 296 ---QELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLT 372
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 550 EEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTI 629
Cdd:pfam10174 373 EEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKERII 452
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 630 ERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEE 709
Cdd:pfam10174 453 ERLKEQREREDRERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEE 532
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 710 CLKMESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELE----RQ 785
Cdd:pfam10174 533 CSKLENQLKKAHNAEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELEsltlRQ 612
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 786 VKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHL 865
Cdd:pfam10174 613 MKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHL 692
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720416779 866 TNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSS-KKKTQEEVAALKREKDRLVQQLKQQTQNRMKL 938
Cdd:pfam10174 693 TNLRAERRKQLEEILEMKQEALLAAISEKDANIALLELSSSkKKKTQEEVMALKREKDRLVHQLKQQTQNRMKL 766
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
398-946 |
3.26e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 93.85 E-value: 3.26e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 398 LRDLEEEIQMLKSNGALSSEEREEEMKQMEVyrshskfMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSR 477
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAE-------LEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 478 KDTELLALQTKLETLTNQfsdskqhIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAG 557
Cdd:COG1196 307 LEERRRELEERLEELEEE-------LAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 558 EIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRD 637
Cdd:COG1196 380 ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 638 RDEREKQEEidtyKKDLKDLREKVSLLQGDLSEKEASLLDIKEhasSLASSGLKKDSRLKTLEIALEQKKEECLKMESQL 717
Cdd:COG1196 460 ALLELLAEL----LEEAALLEAALAELLEELAEAAARLLLLLE---AEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGV 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 718 KKAHEATLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQnkkVANLK 797
Cdd:COG1196 533 EAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLV---ASDLR 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 798 HKEQVEKKKSAQMLEEARRREDSLSDSSQQLQVEELLmamEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLE 877
Cdd:COG1196 610 EADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRL---REVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAE 686
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720416779 878 EVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMADNYEDD 946
Cdd:COG1196 687 RLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEE 755
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
203-947 |
1.52e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 91.66 E-value: 1.52e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 203 DEASKITIWKEQYRVVQEENQHMQMTIQALQDELR-IQRDLNQLFQQdsssrtgepcvAELTEEnFQRLHAEHERQAKEL 281
Cdd:TIGR02168 162 EEAAGISKYKERRKETERKLERTRENLDRLEDILNeLERQLKSLERQ-----------AEKAER-YKELKAELRELELAL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 282 FLLRktleemelrIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLaeaemhVHHLESLLEQKEKENNMLR 361
Cdd:TIGR02168 230 LVLR---------LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLE------VSELEEEIEELQKELYALA 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 362 EEMHRrfenapdsaktkaLQTVIEMKDSKISSMERGLRDLEEEIQMLKSngalSSEEREEEMKQMEVyrsHSKFMKNKVE 441
Cdd:TIGR02168 295 NEISR-------------LEQQKQILRERLANLERQLEELEAQLEELES----KLDELAEELAELEE---KLEELKEELE 354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 442 QLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLtaKEQRAAILQ 521
Cdd:TIGR02168 355 SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI--EELLKKLEE 432
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 522 TEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERV 601
Cdd:TIGR02168 433 AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALL 512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 602 KSlQADTTNTDTALTTLEEALADKERTIE-----RLKEQRDRDEREKQEEIDTYKKDLKDLR---EKVSLLQGDLSEKEA 673
Cdd:TIGR02168 513 KN-QSGLSGILGVLSELISVDEGYEAAIEaalggRLQAVVVENLNAAKKAIAFLKQNELGRVtflPLDSIKGTEIQGNDR 591
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 674 SLLDIKEHASSLASSGLKKDSRLK--------------TLEIALEQKKEECLKM-----ESQLKKAHEATLEARASPEMS 734
Cdd:TIGR02168 592 EILKNIEGFLGVAKDLVKFDPKLRkalsyllggvlvvdDLDNALELAKKLRPGYrivtlDGDLVRPGGVITGGSAKTNSS 671
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 735 D-----RIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQ-------- 801
Cdd:TIGR02168 672 IlerrrEIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEqleeriaq 751
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 802 ---------VEKKKSAQMLEEARRREDSLSDSSQQLQ--VEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRA 870
Cdd:TIGR02168 752 lskelteleAEIEELEERLEEAEEELAEAEAEIEELEaqIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLER 831
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720416779 871 ERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMADNYEDDH 947
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
439-946 |
5.54e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 89.61 E-value: 5.54e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 439 KVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAA 518
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 519 ILQTEVDALRLRLEEKEtmlnkktKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLK 598
Cdd:COG1196 313 ELEERLEELEEELAELE-------EELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 599 ERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDI 678
Cdd:COG1196 386 EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 679 KEHASSLAsSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREISrykDESSKAQTEV 758
Cdd:COG1196 466 AELLEEAA-LLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIG---VEAAYEAALE 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 759 DRLLEILKEVENEKNDKDKKIAELERQVKD----------------QNKKVANLKHKEQVEKKKSAQMLEEARRREDSLS 822
Cdd:COG1196 542 AALAAALQNIVVEDDEVAAAAIEYLKAAKAgratflpldkiraraaLAAALARGAIGAAVDLVASDLREADARYYVLGDT 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 823 DSSQQLQVEELLMA---MEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIA 899
Cdd:COG1196 622 LLGRTLVAARLEAAlrrAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLA 701
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 1720416779 900 LLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMADNYEDD 946
Cdd:COG1196 702 EEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
265-941 |
8.75e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 82.81 E-value: 8.75e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 265 ENFQRLHAEHErQAKELFLLRKTLEEMELRIETQKqtLNARDESIKKLLEMLQSKglsakaTEEDHERTRRLAEAEMHVH 344
Cdd:TIGR02169 198 QQLERLRRERE-KAERYQALLKEKREYEGYELLKE--KEALERQKEAIERQLASL------EEELEKLTEEISELEKRLE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 345 HLESLLEQKEKENNMLREEMHRRFEnapdsAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMK 424
Cdd:TIGR02169 269 EIEQLLEELNKKIKDLGEEEQLRVK-----EKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELER 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 425 QMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIE 504
Cdd:TIGR02169 344 EIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELA 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 505 VLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQ 584
Cdd:TIGR02169 424 DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASE 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 585 EQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEAL----------------ADKERTIERLKEQRD----------- 637
Cdd:TIGR02169 504 ERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIevaagnrlnnvvveddAVAKEAIELLKRRKAgratflplnkm 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 638 RDEREKQEEIDT-----YKKDLKDLREKVS-----------------------------LLQGDLSEKEASLL---DIKE 680
Cdd:TIGR02169 584 RDERRDLSILSEdgvigFAVDLVEFDPKYEpafkyvfgdtlvvedieaarrlmgkyrmvTLEGELFEKSGAMTggsRAPR 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 681 HASSLASSGLKKDSRLKTLEIALEQKKEECL-KMESQLKKAHEATLEARASpemSDRIQQLEREISRYKDESSKAQTEVD 759
Cdd:TIGR02169 664 GGILFSRSEPAELQRLRERLEGLKRELSSLQsELRRIENRLDELSQELSDA---SRKIGEIEKEIEQLEQEEEKLKERLE 740
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 760 RLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHK-EQVEKKKSAQMLEEARRREDSLSDSSQQLqvEELLMAME 838
Cdd:TIGR02169 741 ELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAlNDLEARLSHSRIPEIQAELSKLEEEVSRI--EARLREIE 818
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 839 KVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEvLEMKQEALLAAISEKDAniALLELSSSKKKtqeevaaLK 918
Cdd:TIGR02169 819 QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN-LNGKKEELEEELEELEA--ALRDLESRLGD-------LK 888
|
730 740
....*....|....*....|...
gi 1720416779 919 REKDRLVQQLKQQTQNRMKLMAD 941
Cdd:TIGR02169 889 KERDELEAQLRELERKIEELEAQ 911
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
302-938 |
1.66e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 81.64 E-value: 1.66e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 302 LNARDESIKKLLEmlQSKGLSaKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNMLREEmhrrfenAPDSAKTKALQ 381
Cdd:TIGR02168 150 IEAKPEERRAIFE--EAAGIS-KYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQ-------AEKAERYKELK 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 382 TVIEMKDSKISSMErgLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRShskfmknKVEQLKEELSSKDAQGEELKKRA 461
Cdd:TIGR02168 220 AELRELELALLVLR--LEELREELEELQEELKEAEEELEELTAELQELEE-------KLEELRLEVSELEEEIEELQKEL 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 462 AGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKK 541
Cdd:TIGR02168 291 YALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 542 TKQIQDMAEEKGTQAGEIHDLkdmldvkERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSL---------QADTTNTD 612
Cdd:TIGR02168 371 ESRLEELEEQLETLRSKVAQL-------ELQIASLNNEIERLEARLERLEDRRERLQQEIEELlkkleeaelKELQAELE 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 613 TALTTLEEALADKERTIERLKEQRDRdEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKE---ASLLDIKEHASSLA--- 686
Cdd:TIGR02168 444 ELEEELEELQEELERLEEALEELREE-LEEAEQALDAAERELAQLQARLDSLERLQENLEgfsEGVKALLKNQSGLSgil 522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 687 ---SSGLKKDSRLKT-LEIALE--------------------QKKEECLK---MESQLKKAHEATLEARASPEMSDRIQQ 739
Cdd:TIGR02168 523 gvlSELISVDEGYEAaIEAALGgrlqavvvenlnaakkaiafLKQNELGRvtfLPLDSIKGTEIQGNDREILKNIEGFLG 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 740 LEREISRYKDESSKA----------QTEVDRLLEILK----------------------------------EVENEKNDK 775
Cdd:TIGR02168 603 VAKDLVKFDPKLRKAlsyllggvlvVDDLDNALELAKklrpgyrivtldgdlvrpggvitggsaktnssilERRREIEEL 682
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 776 DKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQ-----VEELLMAMEKVKQELESMKAK 850
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLArleaeVEQLEERIAQLSKELTELEAE 762
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 851 LSSTQQSLAEKETHLTNLRAERRKhLEEVLEMKQEALLAAISEKDA--------NIALLELSSSKKKTQEEVAALKREKD 922
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEAEIEE-LEAQIEQLKEELKALREALDElraeltllNEEAANLRERLESLERRIAATERRLE 841
|
730
....*....|....*.
gi 1720416779 923 RLVQQLKQQTQNRMKL 938
Cdd:TIGR02168 842 DLEEQIEELSEDIESL 857
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
434-924 |
1.12e-14 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 78.95 E-value: 1.12e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 434 KFMKNKVEQLKEELSSKdaqgEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLtnqfSDSKQHIEVLKESLTAK 513
Cdd:PRK03918 172 KEIKRRIERLEKFIKRT----ENIEELIKEKEKELEEVLREINEISSELPELREELEKL----EKEVKELEELKEEIEEL 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 514 EQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAE---------EKGTQAGEIHDLKDMLDVKERKVNV----LQKKI 580
Cdd:PRK03918 244 EKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEkvkelkelkEKAEEYIKLSEFYEEYLDELREIEKrlsrLEEEI 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 581 ENLQEQLRD---KEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKER-----------TIERLKEQRDRDEREKQEe 646
Cdd:PRK03918 324 NGIEERIKEleeKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEElerlkkrltglTPEKLEKELEELEKAKEE- 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 647 idtYKKDLKDLREKVSLLQGDLSEKEASLLDIK---------------EHASSLASSGLKKDSRLKTLEIALEQKKEECL 711
Cdd:PRK03918 403 ---IEEEISKITARIGELKKEIKELKKAIEELKkakgkcpvcgrelteEHRKELLEEYTAELKRIEKELKEIEEKERKLR 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 712 KMESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDESSKAQTE------------------VDRLLEILKEVENEKN 773
Cdd:PRK03918 480 KELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEeyeklkekliklkgeiksLKKELEKLEELKKKLA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 774 DKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLqvEELLMAMEKVKQELESMKAKLSS 853
Cdd:PRK03918 560 ELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKEL--EREEKELKKLEEELDKAFEELAE 637
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720416779 854 TQQSLAEKETHLTNLRA----ERRKHLEEVLEMKQEALLAAISEKDANIALL-ELSSSKKKTQEEVAALKREKDRL 924
Cdd:PRK03918 638 TEKRLEELRKELEELEKkyseEEYEELREEYLELSRELAGLRAELEELEKRReEIKKTLEKLKEELEEREKAKKEL 713
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
273-925 |
1.77e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 78.57 E-value: 1.77e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 273 EHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKgLSAKATEEDHERTRRLAEAEMHVHHLESLLEQ 352
Cdd:TIGR02169 234 ALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKK-IKDLGEEEQLRVKEKIGELEAEIASLERSIAE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 353 KEKENNMLREEMhrrfenAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSH 432
Cdd:TIGR02169 313 KERELEDAEERL------AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 433 SKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTA 512
Cdd:TIGR02169 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSK 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 513 KEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQA-----------GEIHDLKDMLDVKERKV-------- 573
Cdd:TIGR02169 467 YEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRaveevlkasiqGVHGTVAQLGSVGERYAtaievaag 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 574 -----------NVLQKKIENLQE------------QLRDKEKQMSSLKER-----------------------------V 601
Cdd:TIGR02169 547 nrlnnvvveddAVAKEAIELLKRrkagratflplnKMRDERRDLSILSEDgvigfavdlvefdpkyepafkyvfgdtlvV 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 602 KSLQ-ADTTNTDTALTTLEEALADKERTI------ERLKEQRDRDEREK----QEEIDTYKKDLKDLREKVSLLQGDLSE 670
Cdd:TIGR02169 627 EDIEaARRLMGKYRMVTLEGELFEKSGAMtggsraPRGGILFSRSEPAElqrlRERLEGLKRELSSLQSELRRIENRLDE 706
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 671 KEASLLDIKEHASSLassglkkDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARAS-PEMSDRIQQLEREISRYKD 749
Cdd:TIGR02169 707 LSQELSDASRKIGEI-------EKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSElKELEARIEELEEDLHKLEE 779
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 750 ESSKAQTEVDRllEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDslsdssqqlQ 829
Cdd:TIGR02169 780 ALNDLEARLSH--SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKE---------Q 848
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 830 VEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKK 909
Cdd:TIGR02169 849 IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEA 928
|
730
....*....|....*.
gi 1720416779 910 TQEEVAALKREKDRLV 925
Cdd:TIGR02169 929 LEEELSEIEDPKGEDE 944
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
384-922 |
2.27e-14 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 77.75 E-value: 2.27e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 384 IEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSskdaqgeELKKRAAG 463
Cdd:TIGR04523 112 IKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELN-------LLEKEKLN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 464 LQSEIGQVKQELSRKDTELLALQTKLE---TLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNK 540
Cdd:TIGR04523 185 IQKNIDKIKNKLLKLELLLSNLKKKIQknkSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNK 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 541 KTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVL-------------------QKKIENLQEQLRDKEKQMSSLKERV 601
Cdd:TIGR04523 265 IKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLnnqkeqdwnkelkselknqEKKLEEIQNQISQNNKIISQLNEQI 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 602 KSLQADTTNTDTALTTLEEALADKERTIERLKEQRDrderEKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEH 681
Cdd:TIGR04523 345 SQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQ----SYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQE 420
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 682 ASSLassgLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEatlearaspEMSDRIQQLEREISRYKDESSKAQTEVDRL 761
Cdd:TIGR04523 421 KELL----EKEIERLKETIIKNNSEIKDLTNQDSVKELIIK---------NLDNTRESLETQLKVLSRSINKIKQNLEQK 487
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 762 LEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQL-------QVEELL 834
Cdd:TIGR04523 488 QKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELkkenlekEIDEKN 567
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 835 MAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEV 914
Cdd:TIGR04523 568 KEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEV 647
|
....*...
gi 1720416779 915 AALKREKD 922
Cdd:TIGR04523 648 KQIKETIK 655
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
380-680 |
5.09e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.02 E-value: 5.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 380 LQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKK 459
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 460 RAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLN 539
Cdd:TIGR02168 762 EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 540 KKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLE 619
Cdd:TIGR02168 842 DLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELR 921
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720416779 620 EALADKERTIERLKEQRDRDEREKQEEidtYKKDLKDLREKVSLLQGDLSEKEASLLDIKE 680
Cdd:TIGR02168 922 EKLAQLELRLEGLEVRIDNLQERLSEE---YSLTLEEAEALENKIEDDEEEARRRLKRLEN 979
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
382-812 |
1.03e-13 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 75.44 E-value: 1.03e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 382 TVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRA 461
Cdd:TIGR04523 204 SNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKI 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 462 AGLQSEIGQVKQELS------------RKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRL 529
Cdd:TIGR04523 284 KELEKQLNQLKSEISdlnnqkeqdwnkELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQR 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 530 RLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTT 609
Cdd:TIGR04523 364 ELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIK 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 610 NTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEK---EASLLDIKEHASSLA 686
Cdd:TIGR04523 444 DLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKkelEEKVKDLTKKISSLK 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 687 SSGLKKDSRLKTLEIALEQKKEECLKMESQLKKaheATLEARASpEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILK 766
Cdd:TIGR04523 524 EKIEKLESEKKEKESKISDLEDELNKDDFELKK---ENLEKEID-EKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKK 599
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 1720416779 767 EVENEKNDKDKKIAELERQVKD---QNKKVANLKHKEQVEKKKSAQMLE 812
Cdd:TIGR04523 600 DLIKEIEEKEKKISSLEKELEKakkENEKLSSIIKNIKSKKNKLKQEVK 648
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
439-758 |
1.15e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 75.87 E-value: 1.15e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 439 KVEQLKEELsskdaqgEELKKRAAGLQSEIGQVKQELSRKDTE------LLALQTKLE-----TLTNQFSDSKQHIEVLK 507
Cdd:TIGR02169 171 KKEKALEEL-------EEVEENIERLDLIIDEKRQQLERLRRErekaerYQALLKEKReyegyELLKEKEALERQKEAIE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 508 ESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQ--------AGEIHDLKDMLDVKERKVNVLQKK 579
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRvkekigelEAEIASLERSIAEKERELEDAEER 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 580 IENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERL--KEQRDRDE-REKQEEIDTYKKDLKD 656
Cdd:TIGR02169 324 LAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVdkEFAETRDElKDYREKLEKLKREINE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 657 LREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARAS-PEMSD 735
Cdd:TIGR02169 404 LKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEyDRVEK 483
|
330 340
....*....|....*....|...
gi 1720416779 736 RIQQLEREISRYKDESSKAQTEV 758
Cdd:TIGR02169 484 ELSKLQRELAEAEAQARASEERV 506
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
398-774 |
2.61e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 74.72 E-value: 2.61e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 398 LRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSR 477
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIEN 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 478 KDTELLALQTKLETLTNQFSDSKQHIEVLKESLT-----AKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEK 552
Cdd:TIGR02169 756 VKSELKELEARIEELEEDLHKLEEALNDLEARLShsripEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEI 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 553 GTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQadttntdtalttleealADKERTIERL 632
Cdd:TIGR02169 836 QELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLK-----------------KERDELEAQL 898
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 633 KEQRDRdEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASsglkkdsrlktleiaLEQKKEECLK 712
Cdd:TIGR02169 899 RELERK-IEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELS---------------LEDVQAELQR 962
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720416779 713 MESQLKKAHEATLEAraspemsdrIQQLEREISRYKDESSKAQT---EVDRLLEILKEVENEKND 774
Cdd:TIGR02169 963 VEEEIRALEPVNMLA---------IQEYEEVLKRLDELKEKRAKleeERKAILERIEEYEKKKRE 1018
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
261-900 |
5.46e-13 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 73.56 E-value: 5.46e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 261 ELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKglsakaTEEDHERTRRLAEAE 340
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPEL------REELEKLEKEVKELE 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 341 MHVHHLESLLEQKEKENNMLREEmhrrfenapdSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSS--EE 418
Cdd:PRK03918 235 ELKEEIEELEKELESLEGSKRKL----------EEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEfyEE 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 419 REEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKqELSRKDTELLALQTKLETLTNQFSD 498
Cdd:PRK03918 305 YLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELE-ERHELYEEAKAKKEELERLKKRLTG 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 499 skQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDmlDVKERKVNVLQK 578
Cdd:PRK03918 384 --LTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTE--EHRKELLEEYTA 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 579 KIENLQEQLRDKEKQMSSLKERVKSLQadttntdtALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLR 658
Cdd:PRK03918 460 ELKRIEKELKEIEEKERKLRKELRELE--------KVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLK 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 659 EKVSLLQGDLSEKEASLLDIKEhasslassgLKKdsRLKTLEIALEQKKEECLKMESQLKKAHEATLEaraspEMSDRIQ 738
Cdd:PRK03918 532 EKLIKLKGEIKSLKKELEKLEE---------LKK--KLAELEKKLDELEEELAELLKELEELGFESVE-----ELEERLK 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 739 QLEREISRY------KDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQM-- 810
Cdd:PRK03918 596 ELEPFYNEYlelkdaEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRel 675
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 811 ------LEEARRREDSLSDSSQQLqvEELLMAMEKVKQELESMKAKLSSTQQsLAEKETHLTNLRAERRkhLEEVLEMKQ 884
Cdd:PRK03918 676 aglraeLEELEKRREEIKKTLEKL--KEELEEREKAKKELEKLEKALERVEE-LREKVKKYKALLKERA--LSKVGEIAS 750
|
650
....*....|....*.
gi 1720416779 885 EALLAAISEKDANIAL 900
Cdd:PRK03918 751 EIFEELTEGKYSGVRV 766
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
154-928 |
6.37e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 73.56 E-value: 6.37e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 154 LQTQLKEVLRENDLLRKDVEVKESKLSSSMNSIKTFWSPELKKERALrkdEASKITIWKEQYRVvQEENQHMQMTIQALQ 233
Cdd:TIGR02169 189 LDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEAL---ERQKEAIERQLASL-EEELEKLTEEISELE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 234 DEL-RIQRDLNQLFQQdsssrtgepcVAELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKL 312
Cdd:TIGR02169 265 KRLeEIEQLLEELNKK----------IKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKL 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 313 LEmlQSKGLSAKATEEDHER---TRRLAEAEMHVHHLESLLEQKEKENNMLREEmhrrfenapdsakTKALQTVIEMKDS 389
Cdd:TIGR02169 335 LA--EIEELEREIEEERKRRdklTEEYAELKEELEDLRAELEEVDKEFAETRDE-------------LKDYREKLEKLKR 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 390 KISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIG 469
Cdd:TIGR02169 400 EINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 470 QVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTA-----------KEQRAAILQ-------------TEVD 525
Cdd:TIGR02169 480 RVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGvhgtvaqlgsvGERYATAIEvaagnrlnnvvveDDAV 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 526 ALRLRLEEKETMLNKKT----KQIQDMAEEKG--TQAGEIHDLKDMLDVKERKVNVL---------------------QK 578
Cdd:TIGR02169 560 AKEAIELLKRRKAGRATflplNKMRDERRDLSilSEDGVIGFAVDLVEFDPKYEPAFkyvfgdtlvvedieaarrlmgKY 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 579 KIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDER---EKQEEIDTYKKDLK 655
Cdd:TIGR02169 640 RMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENrldELSQELSDASRKIG 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 656 DLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLkkaheATLEARASPEmsd 735
Cdd:TIGR02169 720 EIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAL-----NDLEARLSHS--- 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 736 RIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEAR 815
Cdd:TIGR02169 792 RIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELE 871
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 816 RRedslsdssqQLQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKEThltnlRAERRKHLEEVLEMKQEALLAAISEKD 895
Cdd:TIGR02169 872 EL---------EAALRDLESRLGDLKKERDELEAQLRELERKIEELEA-----QIEKKRKRLSELKAKLEALEEELSEIE 937
|
810 820 830
....*....|....*....|....*....|...
gi 1720416779 896 ANIALLELSSSKKKTQEEVAALKREKDRLVQQL 928
Cdd:TIGR02169 938 DPKGEDEEIPEEELSLEDVQAELQRVEEEIRAL 970
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
212-797 |
1.56e-12 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 72.07 E-value: 1.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 212 KEQYRVVQEENQH-MQMTIQALQDELRI-----QRDLNQLFQQDSSSRTGEPCVAELTEENFQRLHAEHERQAKELFLLR 285
Cdd:pfam15921 244 EDQLEALKSESQNkIELLLQQHQDRIEQlisehEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 286 KTLEEMELRIETQKQTLNARDESIKKLLEMLQSKgLSAKATEEDhERTRRLAEAEMHVHHLESLLEQKEKENNMLREEMH 365
Cdd:pfam15921 324 STVSQLRSELREAKRMYEDKIEELEKQLVLANSE-LTEARTERD-QFSQESGNLDDQLQKLLADLHKREKELSLEKEQNK 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 366 RRFE-NAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKVEQLK 444
Cdd:pfam15921 402 RLWDrDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVV 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 445 EELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKEsltakeqraaiLQTEV 524
Cdd:pfam15921 482 EELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRN-----------VQTEC 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 525 DALRLRLEEKETMLNKKTKQIQDMAE---EKGTQAGEIHDLKDMLdvkERKVNVLQKKIENLQEQLRDKEKQMSSLKERV 601
Cdd:pfam15921 551 EALKLQMAEKDKVIEILRQQIENMTQlvgQHGRTAGAMQVEKAQL---EKEINDRRLELQEFKILKDKKDAKIRELEARV 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 602 KSLQADTTNTDtalttleEALADKERTIERLKEQRDrderEKQEEIDTYKKDLKDLREKVSLLQGDLSEK----EASLLD 677
Cdd:pfam15921 628 SDLELEKVKLV-------NAGSERLRAVKDIKQERD----QLLNEVKTSRNELNSLSEDYEVLKRNFRNKseemETTTNK 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 678 IKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKkAHEATLEAraspeMSDRIQQLEREISRYKDESSKAQTE 757
Cdd:pfam15921 697 LKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQIT-AKRGQIDA-----LQSKIQFLEEAMTNANKEKHFLKEE 770
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 1720416779 758 VDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLK 797
Cdd:pfam15921 771 KNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANME 810
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
736-930 |
1.60e-12 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 70.56 E-value: 1.60e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 736 RIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEAR 815
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 816 RREDSLSDSSQQ------------LQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEvLEMK 883
Cdd:COG4942 108 ELLRALYRLGRQpplalllspedfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAE-LEEE 186
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1720416779 884 QEALLAAISEKDANIAllELSSSKKKTQEEVAALKREKDRLVQQLKQ 930
Cdd:COG4942 187 RAALEALKAERQKLLA--RLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
523-896 |
2.61e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 71.25 E-value: 2.61e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 523 EVDALRLRLEEKETMLNKKTKQIQDMAEEKgTQAGEIHDLKDMLdvKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVK 602
Cdd:TIGR02169 178 ELEEVEENIERLDLIIDEKRQQLERLRRER-EKAERYQALLKEK--REYEGYELLKEKEALERQKEAIERQLASLEEELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 603 SLQADTTNTDTALTTLEEALADKERTIERLKEqrdrderekqEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEha 682
Cdd:TIGR02169 255 KLTEEISELEKRLEEIEQLLEELNKKIKDLGE----------EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEE-- 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 683 sslassglkkdsRLKTLEIALEQKKEEclkmesqlkkaheatlearaspemsdrIQQLEREISRYKDESSKAQTEVDRLL 762
Cdd:TIGR02169 323 ------------RLAKLEAEIDKLLAE---------------------------IEELEREIEEERKRRDKLTEEYAELK 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 763 EILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQL-----QVEELLMAM 837
Cdd:TIGR02169 364 EELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIagieaKINELEEEK 443
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1720416779 838 EKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKhLEEVLEMKQEALLAAISEKDA 896
Cdd:TIGR02169 444 EDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDR-VEKELSKLQRELAEAEAQARA 501
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
250-829 |
2.52e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 68.14 E-value: 2.52e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 250 SSSRTGEPCVAELTEENFQRLHAE-HERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEmlqskglSAKATEE 328
Cdd:PRK02224 172 SDARLGVERVLSDQRGSLDQLKAQiEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRD-------EADEVLE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 329 DHERTR-RLAEAEMHVHHLESLLEQKEKENNMLREEMHRRFEnapdsaktkALQTVIEMKDSKISsmERGLRDLEEEIQM 407
Cdd:PRK02224 245 EHEERReELETLEAEIEDLRETIAETEREREELAEEVRDLRE---------RLEELEEERDDLLA--EAGLDDADAEAVE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 408 LKSNgALSSEEREEEMKQMEVYRSHSKFmKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQT 487
Cdd:PRK02224 314 ARRE-ELEDRDEELRDRLEECRVAAQAH-NEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEE 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 488 KLETLTNQFSDS-------KQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNK----------KTKQIQDMAE 550
Cdd:PRK02224 392 EIEELRERFGDApvdlgnaEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAgkcpecgqpvEGSPHVETIE 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 551 EKGTQAGEihdLKDMLDVKERKVNVLQKKIENLqEQLRDKEKQMSSLKERVKSLqadttntdtalttlEEALADKERTIE 630
Cdd:PRK02224 472 EDRERVEE---LEAELEDLEEEVEEVEERLERA-EDLVEAEDRIERLEERREDL--------------EELIAERRETIE 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 631 RLKEQRDRDEREKQE---EIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLAssglkkdsRLKTLEIALEQKK 707
Cdd:PRK02224 534 EKRERAEELRERAAEleaEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE--------RIRTLLAAIADAE 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 708 EECLKMESQLKKAHEATLEARAS-PEMSDRIQQLEREISryKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQV 786
Cdd:PRK02224 606 DEIERLREKREALAELNDERRERlAEKRERKRELEAEFD--EARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEI 683
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 1720416779 787 KDQNKKVANLKhkeqvEKKKSAQMLEEARRREDSLSDSSQQLQ 829
Cdd:PRK02224 684 GAVENELEELE-----ELRERREALENRVEALEALYDEAEELE 721
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
455-673 |
2.64e-11 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 66.71 E-value: 2.64e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 455 EELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEK 534
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 535 ETMLNKKTKQIQDMAEEKGTQ----AGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTN 610
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLAlllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAE 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720416779 611 TDTALTTLEEALADKERTIERLKeqrdRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEA 673
Cdd:COG4942 183 LEEERAALEALKAERQKLLARLE----KELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
272-832 |
3.38e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.86 E-value: 3.38e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 272 AEHERQAKELFLLRKTLEEMELRIETQKQTLNARD-ESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLL 350
Cdd:PTZ00121 1245 AEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKaDELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKA 1324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 351 EQKEKENNMLREEMHRRfENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQmlksngALSSEEREEEMKQMEVYR 430
Cdd:PTZ00121 1325 EEAKKKADAAKKKAEEA-KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK------ADAAKKKAEEKKKADEAK 1397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 431 SHSKFMKNKVEQLKEELSSKDaQGEELKKRAAGL-QSEIGQVKQELSRKDTEL---LALQTKLETLTNQFSDSKQHIEVL 506
Cdd:PTZ00121 1398 KKAEEDKKKADELKKAAAAKK-KADEAKKKAEEKkKADEAKKKAEEAKKADEAkkkAEEAKKAEEAKKKAEEAKKADEAK 1476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 507 KESLTAKE-----QRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEE--KGTQAGEIHDLKDMLDVKE----RKVNV 575
Cdd:PTZ00121 1477 KKAEEAKKadeakKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEakKAEEAKKADEAKKAEEKKKadelKKAEE 1556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 576 LQK--KIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEidtykkd 653
Cdd:PTZ00121 1557 LKKaeEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE------- 1629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 654 lkDLREKVSLLQGDLSE--KEASLLDIKEHASSLASSGLKKDSRLKtleialEQKKEECLKMESQLKKAHEATLEARASP 731
Cdd:PTZ00121 1630 --EEKKKVEQLKKKEAEekKKAEELKKAEEENKIKAAEEAKKAEED------KKKAEEAKKAEEDEKKAAEALKKEAEEA 1701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 732 EMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEkndkDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQML 811
Cdd:PTZ00121 1702 KKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE----DKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEK 1777
|
570 580
....*....|....*....|.
gi 1720416779 812 EEARRREDSLSDSSQQLQVEE 832
Cdd:PTZ00121 1778 EAVIEEELDEEDEKRRMEVDK 1798
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
259-938 |
4.40e-11 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 67.30 E-value: 4.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 259 VAELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAE 338
Cdd:TIGR00618 181 LALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQ 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 339 AEMHVHHLESLLEQKEKENNMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEE 418
Cdd:TIGR00618 261 LLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSI 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 419 REEEMKQMEVYRSHSKF-MKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFS 497
Cdd:TIGR00618 341 EEQRRLLQTLHSQEIHIrDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFR 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 498 DSKQHIEVLKESLTAKEQRAAILQtevdalrLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQ 577
Cdd:TIGR00618 421 DLQGQLAHAKKQQELQQRYAELCA-------AAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVL 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 578 KKIENLQEQLRDKEKQMSSLKERVKSL------QADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDT-- 649
Cdd:TIGR00618 494 ARLLELQEEPCPLCGSCIHPNPARQDIdnpgplTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSfs 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 650 --------YKKDLKDLREKVSLLQgDLSEKEASLLDIKEHASSLASsgLKKDSRLKTLEIAL-EQKKEECLKMESQLKKA 720
Cdd:TIGR00618 574 iltqcdnrSKEDIPNLQNITVRLQ-DLTEKLSEAEDMLACEQHALL--RKLQPEQDLQDVRLhLQQCSQELALKLTALHA 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 721 HEATLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDK----DKKIAELERQVKDQNKKVANL 796
Cdd:TIGR00618 651 LQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLlrelETHIEEYDREFNEIENASSSL 730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 797 KHKEQVEKKKSAQMLEEARRREDSLSDSS--QQLQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRK 874
Cdd:TIGR00618 731 GSDLAAREDALNQSLKELMHQARTVLKARteAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQ 810
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720416779 875 HLEEVLEMKQEALLAAISEKDANIALLELSSSK----KKTQEEVAALKREKDRLVQQLKQQTQNRMKL 938
Cdd:TIGR00618 811 EIPSDEDILNLQCETLVQEEEQFLSRLEEKSATlgeiTHQLLKYEECSKQLAQLTQEQAKIIQLSDKL 878
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
277-657 |
5.79e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.00 E-value: 5.79e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 277 QAKELFLLRKTLEEMELRIETQKQTLNArdesikkllemlqskglsakateedhertrrlaeaemhvhhLESLLEQKEKE 356
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAE-----------------------------------------LRKELEELEEE 713
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 357 nnmlreemhrrfenapdsakTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRShskfm 436
Cdd:TIGR02168 714 --------------------LEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEE----- 768
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 437 knKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQR 516
Cdd:TIGR02168 769 --RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQ 846
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 517 AAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSS 596
Cdd:TIGR02168 847 IEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQ 926
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720416779 597 LKERVKSLQADTTNTDTALTTLEEALADkerTIERLKEQRDRDEREKQEEIDTYKKDLKDL 657
Cdd:TIGR02168 927 LELRLEGLEVRIDNLQERLSEEYSLTLE---EAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
380-793 |
7.28e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 66.58 E-value: 7.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 380 LQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKK 459
Cdd:TIGR04523 326 IQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEK 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 460 RAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLN 539
Cdd:TIGR04523 406 LNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLE 485
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 540 KKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQadttnTDTALTTLE 619
Cdd:TIGR04523 486 QKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDD-----FELKKENLE 560
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 620 EALADKERTIERLKEQRD---RDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRL 696
Cdd:TIGR04523 561 KEIDEKNKEIEELKQTQKslkKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKK 640
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 697 KTLEIALEQKKEECLKMESqlkKAHEATLEARASPEMSDRIQQL----EREISRYKDESSKAQT---EVDRLLEILKEVE 769
Cdd:TIGR04523 641 NKLKQEVKQIKETIKEIRN---KWPEIIKKIKESKTKIDDIIELmkdwLKELSLHYKKYITRMIrikDLPKLEEKYKEIE 717
|
410 420
....*....|....*....|....
gi 1720416779 770 NEKNDKDKKIAELERQVKDQNKKV 793
Cdd:TIGR04523 718 KELKKLDEFSKELENIIKNFNKKF 741
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
398-924 |
1.27e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 65.83 E-value: 1.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 398 LRDLEEEIQMLKSNG------ALSSEERE--EEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIG 469
Cdd:PRK02224 189 LDQLKAQIEEKEEKDlherlnGLESELAEldEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIA 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 470 QVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMA 549
Cdd:PRK02224 269 ETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLR 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 550 EEkgtqageIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLqadttntdtalttlEEALADKERTI 629
Cdd:PRK02224 349 ED-------ADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEEL--------------RERFGDAPVDL 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 630 ERLKEQRDrderEKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIK-----------EHASSLAssglKKDSRLKT 698
Cdd:PRK02224 408 GNAEDFLE----ELREERDELREREAELEATLRTARERVEEAEALLEAGKcpecgqpvegsPHVETIE----EDRERVEE 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 699 LEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKK 778
Cdd:PRK02224 480 LEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 779 IAELERQVKDQNKKVANLKHKeqvekkksaqmLEEARRREDSLSDssqqlqVEELLMAMEKVKQELESMKAKLSSTQQSL 858
Cdd:PRK02224 560 AAEAEEEAEEAREEVAELNSK-----------LAELKERIESLER------IRTLLAAIADAEDEIERLREKREALAELN 622
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720416779 859 AEKETHLTNLRaERRKHLEEvlEMKQEALLAAISEKD------ANIA--LLELSSSKKKTQEEVAALKREKDRL 924
Cdd:PRK02224 623 DERRERLAEKR-ERKRELEA--EFDEARIEEAREDKEraeeylEQVEekLDELREERDDLQAEIGAVENELEEL 693
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
193-789 |
3.43e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 3.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 193 ELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTIQALQDELR-IQRDLNQLFQQDSSSRTGepcvAELTEENFQRLH 271
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYeLLAELARLEQDIARLEER----RRELEERLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 272 AEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEED-HERTRRLAEAEMHVHHLESLL 350
Cdd:COG1196 323 EELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEElEELAEELLEALRAAAELAAQL 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 351 EQKEK--ENNMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEmkqmev 428
Cdd:COG1196 403 EELEEaeEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE------ 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 429 yrshskfmkNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLAlqtklETLTNQFSDSKQHIEVLKE 508
Cdd:COG1196 477 ---------AALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA-----GAVAVLIGVEAAYEAALEA 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 509 SLTAKEQRaAILQTEVDALRLRLEEKETMLNKKT-----KQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENL 583
Cdd:COG1196 543 ALAAALQN-IVVEDDEVAAAAIEYLKAAKAGRATflpldKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDT 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 584 QEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKvsl 663
Cdd:COG1196 622 LLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEA--- 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 664 lQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARAspEMSDRIQQLERE 743
Cdd:COG1196 699 -LLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE--ELERELERLERE 775
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 1720416779 744 ISRY-------KDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQ 789
Cdd:COG1196 776 IEALgpvnllaIEEYEELEERYDFLSEQREDLEEARETLEEAIEEIDRETRER 828
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
150-930 |
6.46e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 63.60 E-value: 6.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 150 TIMDLQTQLKEVLRENDLLrKDVEVKESKLSSSMNSIKTFWSPELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTI 229
Cdd:pfam15921 111 SVIDLQTKLQEMQMERDAM-ADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEI 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 230 QALQDELRiQRDLNQLFQQDSSSRTGEPCVAELTEENFQRLHAEHERQAKELFLLRKTLEEmeLRIETQKQT---LNARD 306
Cdd:pfam15921 190 RSILVDFE-EASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEA--LKSESQNKIellLQQHQ 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 307 ESIKKLL--EMLQSKGLSAKATEEDhertrrlAEAEMHVHHLESLLEQKEKENNMLREEMhrrfenapDSAKTKALQTVI 384
Cdd:pfam15921 267 DRIEQLIseHEVEITGLTEKASSAR-------SQANSIQSQLEIIQEQARNQNSMYMRQL--------SDLESTVSQLRS 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 385 EMKDSKissmerglRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKVEQL-------KEELSSKDAQGEEL 457
Cdd:pfam15921 332 ELREAK--------RMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLladlhkrEKELSLEKEQNKRL 403
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 458 KKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTnqfSDSKQHIEVLKESLTAKEQRAAilqtEVDALRLRLEEKETM 537
Cdd:pfam15921 404 WDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMK---SECQGQMERQMAAIQGKNESLE----KVSSLTAQLESTKEM 476
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 538 LNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTT 617
Cdd:pfam15921 477 LRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQ 556
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 618 leeaLADKERTIERLKEQrdrderekqeeIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLK 697
Cdd:pfam15921 557 ----MAEKDKVIEILRQQ-----------IENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIR 621
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 698 TLEIALEQKKEECLKMESQlkkaheatlearaspeMSDRIQQLEreisrykdessKAQTEVDRLLEILKEVENEKNDKDK 777
Cdd:pfam15921 622 ELEARVSDLELEKVKLVNA----------------GSERLRAVK-----------DIKQERDQLLNEVKTSRNELNSLSE 674
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 778 KIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQlqVEELLMAMEKvkqELESMKAKLSSTQQS 857
Cdd:pfam15921 675 DYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGH--AMKVAMGMQK---QITAKRGQIDALQSK 749
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720416779 858 LAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQ 930
Cdd:pfam15921 750 IQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAE 822
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
396-937 |
8.38e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.24 E-value: 8.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 396 RGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRshskfmknKVEQLKEELSSKdaqGEELKKRAAGLQSEIGQVKQEL 475
Cdd:PTZ00121 1070 EGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAK--------KTETGKAEEARK---AEEAKKKAEDARKAEEARKAED 1138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 476 SRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEV-DALRLRLEEKETMLNKKTKQIQDMAEEKGT 554
Cdd:PTZ00121 1139 ARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVrKAEELRKAEDARKAEAARKAEEERKAEEAR 1218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 555 QAGEIHDLKDMLDVKERKVNVLQ----KKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEAlaDKERTIE 630
Cdd:PTZ00121 1219 KAEDAKKAEAVKKAEEAKKDAEEakkaEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEK--KKADEAK 1296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 631 RLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEEC 710
Cdd:PTZ00121 1297 KAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEA 1376
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 711 LKMESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQN 790
Cdd:PTZ00121 1377 KKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1456
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 791 KKVANLKHK-EQVEKKKSAQMLEEARRREDSLSDSSQQL--QVEELLMAMEKVKQELESMKAKLSSTQQSL--AEKETHL 865
Cdd:PTZ00121 1457 KKAEEAKKKaEEAKKADEAKKKAEEAKKADEAKKKAEEAkkKADEAKKAAEAKKKADEAKKAEEAKKADEAkkAEEAKKA 1536
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 866 TNLR-AERRKHLEEV--------LEMKQEALLAAISEKDANIALL---ELSSSKKKTQEEVAALKREKDRL-VQQLKQQT 932
Cdd:PTZ00121 1537 DEAKkAEEKKKADELkkaeelkkAEEKKKAEEAKKAEEDKNMALRkaeEAKKAEEARIEEVMKLYEEEKKMkAEEAKKAE 1616
|
....*
gi 1720416779 933 QNRMK 937
Cdd:PTZ00121 1617 EAKIK 1621
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
465-930 |
1.12e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 62.75 E-value: 1.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 465 QSEIGQVKQELSRK-DTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTK 543
Cdd:PRK02224 186 RGSLDQLKAQIEEKeEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 544 QIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKK-------IENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALT 616
Cdd:PRK02224 266 TIAETEREREELAEEVRDLRERLEELEEERDDLLAEaglddadAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 617 TLEEALADKERTIERLKEQRDRDEREKQ---EEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKD 693
Cdd:PRK02224 346 SLREDADDLEERAEELREEAAELESELEearEAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELR 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 694 SRLKTLEIALEQKKEECLKMESQLK--KAHEATLEARASP------EMSDRIQQLEREISRYKDESSKAQTEVDRlLEIL 765
Cdd:PRK02224 426 EREAELEATLRTARERVEEAEALLEagKCPECGQPVEGSPhvetieEDRERVEELEAELEDLEEEVEEVEERLER-AEDL 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 766 KEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQ-----VEELLMAMEKV 840
Cdd:PRK02224 505 VEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEeareeVAELNSKLAEL 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 841 KQELESMkAKLSSTQQSLAEKETHLTNLRaERRKHLEEVLEMKQEALlaaiSEKDANIALLElsssKKKTQEEVAALKRE 920
Cdd:PRK02224 585 KERIESL-ERIRTLLAAIADAEDEIERLR-EKREALAELNDERRERL----AEKRERKRELE----AEFDEARIEEARED 654
|
490
....*....|
gi 1720416779 921 KDRLVQQLKQ 930
Cdd:PRK02224 655 KERAEEYLEQ 664
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
268-889 |
1.80e-09 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 61.99 E-value: 1.80e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 268 QRLHAEHERQAKELFLLRKTLEEMELRIETQK-QTLNARDESIKKL-LEMLQSKGLSAKATEEDHERTRRLAEAEMHVHH 345
Cdd:TIGR00606 464 QQLEGSSDRILELDQELRKAERELSKAEKNSLtETLKKEVKSLQNEkADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKD 543
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 346 LESLLEQKEKENNMLREEMhrrFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQ 425
Cdd:TIGR00606 544 KMDKDEQIRKIKSRHSDEL---TSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQ 620
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 426 MEVYRSH------SKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELS----------RKDTELLALQTKL 489
Cdd:TIGR00606 621 LSSYEDKlfdvcgSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQsccpvcqrvfQTEAELQEFISDL 700
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 490 ETLTNQFSDSKQHIEVLKESLTaKEQRAAILQTEVDALRLRLEEKE--TMLNKKTKQIQDMAEEKgTQAGEIHDLKDMLD 567
Cdd:TIGR00606 701 QSKLRLAPDKLKSTESELKKKE-KRRDEMLGLAPGRQSIIDLKEKEipELRNKLQKVNRDIQRLK-NDIEEQETLLGTIM 778
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 568 VKERKVNVLQKK---IENLQEQLRDKEKQMSSLKERVKSlqadttntdtalttleealADKERTIERL---KEQRDRDER 641
Cdd:TIGR00606 779 PEEESAKVCLTDvtiMERFQMELKDVERKIAQQAAKLQG-------------------SDLDRTVQQVnqeKQEKQHELD 839
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 642 EKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHAS---SLASSGLKKDSRLKTLEIALEQKKEECLKMESQLK 718
Cdd:TIGR00606 840 TVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQrrqQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLE 919
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 719 kaheatlearaspemsDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAE-LERQVKDQNKKVANLK 797
Cdd:TIGR00606 920 ----------------KDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDgKDDYLKQKETELNTVN 983
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 798 HKEQVEKKKSAQMLEEARRREDSLSDSSQQLQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKEthLTNLRAERRKHLE 877
Cdd:TIGR00606 984 AQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQ--VLQMKQEHQKLEE 1061
|
650
....*....|..
gi 1720416779 878 EVLEMKQEALLA 889
Cdd:TIGR00606 1062 NIDLIKRNHVLA 1073
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
193-942 |
2.56e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 61.53 E-value: 2.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 193 ELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTIQALQDELRIQRDLNQLFQQDSSSRTgepcvAELTEENFQRLHA 272
Cdd:pfam02463 203 KEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEE-----EKLAQVLKENKEE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 273 EHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEaemhvhhLESLLEQ 352
Cdd:pfam02463 278 EKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKE-------LKELEIK 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 353 KEKENNmlreemhrrfenapdsaktkalqtviemkdsKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSH 432
Cdd:pfam02463 351 REAEEE-------------------------------EEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELEL 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 433 SKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESL-T 511
Cdd:pfam02463 400 KSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETqL 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 512 AKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLqkkieNLQEQLRDKE 591
Cdd:pfam02463 480 VKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVA-----ISTAVIVEVS 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 592 KQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSE- 670
Cdd:pfam02463 555 ATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTEl 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 671 -KEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATlearASPEMSDRIQQLEREISRYKD 749
Cdd:pfam02463 635 tKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESEL----AKEEILRRQLEIKKKEQREKE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 750 ESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSA-QMLEEARRREDSLSDSSQQL 828
Cdd:pfam02463 711 ELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELsLKEKELAEEREKTEKLKVEE 790
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 829 QVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKK 908
Cdd:pfam02463 791 EKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQ 870
|
730 740 750
....*....|....*....|....*....|....
gi 1720416779 909 KTQEEVAALKREKDRLVQQLKQQTQNRMKLMADN 942
Cdd:pfam02463 871 ELLLKEEELEEQKLKDELESKEEKEKEEKKELEE 904
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
212-593 |
1.43e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.31 E-value: 1.43e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 212 KEQYRVVQEENQHMQMTIQALQDEL-RIQRDLNQLFQ--QDSSSRTGEpcvaelTEENFQRLHAEHERQAKELfllrktl 288
Cdd:TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELrRIENRLDELSQelSDASRKIGE------IEKEIEQLEQEEEKLKERL------- 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 289 EEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEdhertrrlAEAEMHVHHLESLLEQKEKENNMLREEmHRRF 368
Cdd:TIGR02169 740 EELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEE--------ALNDLEARLSHSRIPEIQAELSKLEEE-VSRI 810
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 369 ENAPDSAktkalqtviemkDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVyrshskfMKNKVEQLKEELS 448
Cdd:TIGR02169 811 EARLREI------------EQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN-------LNGKKEELEEELE 871
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 449 SKDAQGEELKKRAAGLQSEIGQVKQELSrkdtellALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALR 528
Cdd:TIGR02169 872 ELEAALRDLESRLGDLKKERDELEAQLR-------ELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE 944
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720416779 529 ------LRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQ 593
Cdd:TIGR02169 945 eipeeeLSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
508-760 |
1.90e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.85 E-value: 1.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 508 ESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQL 587
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 588 RDKEKQmssLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDerekQEEIDTYKKDLKDLREKVSLLQGD 667
Cdd:COG4942 100 EAQKEE---LAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPAR----REQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 668 LSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKkaheatlearaspEMSDRIQQLEREISRY 747
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAE-------------ELEALIARLEAEAAAA 239
|
250
....*....|...
gi 1720416779 748 KDESSKAQTEVDR 760
Cdd:COG4942 240 AERTPAAGFAALK 252
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
501-894 |
2.50e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 58.24 E-value: 2.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 501 QHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKgtqagEIHDLKDMLDVKERKVNVLQKKI 580
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQ-----ELEALEAELAELPERLEELEERL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 581 ENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREK 660
Cdd:COG4717 156 EELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENE 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 661 VSLLQ--GDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQ 738
Cdd:COG4717 236 LEAAAleERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEE 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 739 QLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVK--DQNKKVANLKHKEQVEKKKS----AQMLE 812
Cdd:COG4717 316 LEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQleELEQEIAALLAEAGVEDEEElraaLEQAE 395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 813 EARRREDSLSDSSQQLQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAIS 892
Cdd:COG4717 396 EYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELL 475
|
..
gi 1720416779 893 EK 894
Cdd:COG4717 476 QE 477
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
288-895 |
3.39e-08 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 57.99 E-value: 3.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 288 LEEMELRIETQKQTLNARDESIKKLLEMLQSKGL---SAKATEEDHERTRRLAEAEmhVHHLESLLEQKEKENNMLREEM 364
Cdd:PRK01156 164 LERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLeleNIKKQIADDEKSHSITLKE--IERLSIEYNNAMDDYNNLKSAL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 365 HRrfenapdsakTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSngalsSEEREEEMKQMEVYRSHSKF-----MKNK 439
Cdd:PRK01156 242 NE----------LSSLEDMKNRYESEIKTAESDLSMELEKNNYYKE-----LEERHMKIINDPVYKNRNYIndyfkYKND 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 440 VEQLKEELSSKDAQ---GEELKKRAAGLQSEIGQVKQELSRKDtELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQR 516
Cdd:PRK01156 307 IENKKQILSNIDAEinkYHAIIKKLSVLQKDYNDYIKKKSRYD-DLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKN 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 517 AAILQTEVDALRLRLEEKETMLNKKTKQIqdmaeekgtqageihdlKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSS 596
Cdd:PRK01156 386 IERMSAFISEILKIQEIDPDAIKKELNEI-----------------NVKLQDISSKVSSLNQRIRALRENLDELSRNMEM 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 597 LKERVKslqADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEeIDTYKKDLKDLREKVSLLQ--------GDL 668
Cdd:PRK01156 449 LNGQSV---CPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKD-IDEKIVDLKKRKEYLESEEinksineyNKI 524
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 669 SEKEASLLDIKEHASSLASSGLKK---DSRLKTLEIA-LEQKKEECLKMESQLKKAHEATLEARaSPEMSDRIQQLErei 744
Cdd:PRK01156 525 ESARADLEDIKIKINELKDKHDKYeeiKNRYKSLKLEdLDSKRTSWLNALAVISLIDIETNRSR-SNEIKKQLNDLE--- 600
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 745 srykdesskaqtevDRLLEILKEVENEKNDKDKKIAELERQVKD--------QNKKVANLKHKEQVEKKKSaQMLEEARR 816
Cdd:PRK01156 601 --------------SRLQEIEIGFPDDKSYIDKSIREIENEANNlnnkyneiQENKILIEKLRGKIDNYKK-QIAEIDSI 665
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720416779 817 REDSLSDSSQQLQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEevlemKQEALLAAISEKD 895
Cdd:PRK01156 666 IPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLE-----SMKKIKKAIGDLK 739
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
564-780 |
5.82e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.31 E-value: 5.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 564 DMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREK 643
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 644 QEEIDTYKKDLKDL-------REKVSLLQGDLSEKEASLLDIKEHASSLAS--SGLKKD-SRLKTLEIALEQKKEECLKM 713
Cdd:COG4942 100 EAQKEELAELLRALyrlgrqpPLALLLSPEDFLDAVRRLQYLKYLAPARREqaEELRADlAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720416779 714 ESQLKKAHEATLEARAspEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIA 780
Cdd:COG4942 180 LAELEEERAALEALKA--ERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
438-871 |
1.32e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.08 E-value: 1.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 438 NKVEQLKEELSSKDAQ--GEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDS--------KQHIEVLK 507
Cdd:COG4913 272 AELEYLRAALRLWFAQrrLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNggdrleqlEREIERLE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 508 ESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKvnvlqkkienLQEQL 587
Cdd:COG4913 352 RELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRD----------LRREL 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 588 RDKEKQMSSLKERVKS----LQADTTNTDTALTTLEEAL---------ADKERT----IERL-----------KEQRDR- 638
Cdd:COG4913 422 RELEAEIASLERRKSNiparLLALRDALAEALGLDEAELpfvgelievRPEEERwrgaIERVlggfaltllvpPEHYAAa 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 639 ----DEREKQEEIDTYK-KDLKDLREKVSLLQGDLSEKeaslLDIKEHA------SSLAS-------------------- 687
Cdd:COG4913 502 lrwvNRLHLRGRLVYERvRTGLPDPERPRLDPDSLAGK----LDFKPHPfrawleAELGRrfdyvcvdspeelrrhprai 577
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 688 --SGLKKDS------------------------RLKTLEIALEQKKEECLKMESQLKKAHEA--TLEARAS--------- 730
Cdd:COG4913 578 trAGQVKGNgtrhekddrrrirsryvlgfdnraKLAALEAELAELEEELAEAEERLEALEAEldALQERREalqrlaeys 657
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 731 ------PEMSDRIQQLEREISRYKDESSkaqtEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKhkeqvek 804
Cdd:COG4913 658 wdeidvASAEREIAELEAELERLDASSD----DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAE------- 726
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720416779 805 kksaQMLEEARRREDSLSDSSQQLQVEEL------LMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAE 871
Cdd:COG4913 727 ----EELDELQDRLEAAEDLARLELRALLeerfaaALGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
398-846 |
1.43e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 55.54 E-value: 1.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 398 LRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSR 477
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 478 KDT--ELLALQTKLETLTNQFSDSKQHIEVLKEsltaKEQRAAILQTEVDALRLRLEEKETMLNKKT-KQIQDMAEEKGT 554
Cdd:COG4717 128 LPLyqELEALEAELAELPERLEELEERLEELRE----LEEELEELEAELAELQEELEELLEQLSLATeEELQDLAEELEE 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 555 QAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVK--------SLQADTTNTDTALTTLEEALADKE 626
Cdd:COG4717 204 LQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLlliaaallALLGLGGSLLSLILTIAGVLFLVL 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 627 RTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQK 706
Cdd:COG4717 284 GLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 707 KEECLKMESQ--LKKAHEATLEA-RASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEIL--KEVENEKNDKDKKIAE 781
Cdd:COG4717 364 QLEELEQEIAalLAEAGVEDEEElRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALdeEELEEELEELEEELEE 443
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 782 LERQVKDQNKKVANLKHkeQVEKKKSAQMLEEARRREDSLSDSSQQLQVEE-----LLMAMEKVKQELES 846
Cdd:COG4717 444 LEEELEELREELAELEA--ELEQLEEDGELAELLQELEELKAELRELAEEWaalklALELLEEAREEYRE 511
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
573-933 |
1.47e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.82 E-value: 1.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 573 VNVLQKKIENLQEQLRDK--EKQMSSLKERVKSLqadttntdtalttlEEALADKERTIERLKEQRDR------------ 638
Cdd:PRK02224 178 VERVLSDQRGSLDQLKAQieEKEEKDLHERLNGL--------------ESELAELDEEIERYEEQREQaretrdeadevl 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 639 -DEREKQEEIDTYKKDLKDLREKVSllqGDLSEKEasllDIKEHASSLassglkkDSRLKTLEIALEQKKEEClkmesQL 717
Cdd:PRK02224 244 eEHEERREELETLEAEIEDLRETIA---ETERERE----ELAEEVRDL-------RERLEELEEERDDLLAEA-----GL 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 718 KKAHEATLEARASpEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQnkkvanlk 797
Cdd:PRK02224 305 DDADAEAVEARRE-ELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEA-------- 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 798 hKEQVEKKKSAqmLEEARRREDSLSDssqqlQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRaERRKHLE 877
Cdd:PRK02224 376 -REAVEDRREE--IEELEEEIEELRE-----RFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTAR-ERVEEAE 446
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720416779 878 EVLE----------MKQEALLAAISEKDANIAllELSSSKKKTQEEVAALKREKDRLVQQLKQQTQ 933
Cdd:PRK02224 447 ALLEagkcpecgqpVEGSPHVETIEEDRERVE--ELEAELEDLEEEVEEVEERLERAEDLVEAEDR 510
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
474-662 |
1.84e-07 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 53.39 E-value: 1.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 474 ELSRKDTELLALQTKLETLtnqfsdsKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLnkktKQIQDMAEEKG 553
Cdd:COG1579 11 DLQELDSELDRLEHRLKEL-------PAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEI----EEVEARIKKYE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 554 TQAGEIHDLKDMldvkerkvNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQAdttntdtALTTLEEALADKERTIERLK 633
Cdd:COG1579 80 EQLGNVRNNKEY--------EALQKEIESLKRRISDLEDEILELMERIEELEE-------ELAELEAELAELEAELEEKK 144
|
170 180
....*....|....*....|....*....
gi 1720416779 634 EQRDRDEREKQEEIDTYKKDLKDLREKVS 662
Cdd:COG1579 145 AELDEELAELEAELEELEAEREELAAKIP 173
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
389-602 |
4.30e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.61 E-value: 4.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 389 SKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEI 468
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 469 GQVKQELSR--KDTELLALQTKLETLTNQ--FSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQ 544
Cdd:COG4942 100 EAQKEELAEllRALYRLGRQPPLALLLSPedFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1720416779 545 IQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVK 602
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
428-940 |
4.43e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 54.35 E-value: 4.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 428 VYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLK 507
Cdd:pfam15921 79 VLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAK 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 508 eslTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQageIHDLKDMLDVKERKVNVLQKKIenlqeqL 587
Cdd:pfam15921 159 ---CLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKK---IYEHDSMSTMHFRSLGSAISKI------L 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 588 RDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERT-IERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQG 666
Cdd:pfam15921 227 RELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDrIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQE 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 667 DLSEKEASLLdikEHASSLASSGLKKDSRLKTLEIALEQKKEEclkMESQLKKAHEATLEARAS-PEMSDRIQQLEREIS 745
Cdd:pfam15921 307 QARNQNSMYM---RQLSDLESTVSQLRSELREAKRMYEDKIEE---LEKQLVLANSELTEARTErDQFSQESGNLDDQLQ 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 746 RYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKH-----KEQVEKKKSAQMLEEARRREDS 820
Cdd:pfam15921 381 KLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEAllkamKSECQGQMERQMAAIQGKNESL 460
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 821 LSDSSQQLQVEELLMAMEKVKQELESMKAKLSSTQQ-------SLAEKETHLTNLRAERRKhLEEVLEMKQEALLAAISE 893
Cdd:pfam15921 461 EKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERtvsdltaSLQEKERAIEATNAEITK-LRSRVDLKLQELQHLKNE 539
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 1720416779 894 KDaniallelssSKKKTQEEVAALK---REKDRLVQQLKQQTQNRMKLMA 940
Cdd:pfam15921 540 GD----------HLRNVQTECEALKlqmAEKDKVIEILRQQIENMTQLVG 579
|
|
| RBD-FIP |
pfam09457 |
FIP domain; The FIP domain is the Rab11-binding domain (RBD) at the C-terminus of a family of ... |
1024-1064 |
4.69e-07 |
|
FIP domain; The FIP domain is the Rab11-binding domain (RBD) at the C-terminus of a family of Rab11-interacting proteins (FIPs). The Rab proteins constitute the largest family of small GTPases (>60 members in mammals). Among them Rab11 is a well characterized regulator of endocytic and recycling pathways. Rab11 associates with a broad range of post-Golgi organelles, including recycling endosomes.
Pssm-ID: 462805 [Multi-domain] Cd Length: 41 Bit Score: 47.33 E-value: 4.69e-07
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 1720416779 1024 TQEQLQNELEKVEGDNAELQEFANTILQQIADHCPDILEQV 1064
Cdd:pfam09457 1 SRDELQDALQKQEEENRRLEDYIDNILLRIMEHNPSILEVP 41
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
764-920 |
6.11e-07 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 53.24 E-value: 6.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 764 ILKEVENEKNDKdKKIAELErqVKDQNKKVANLKHKEQVEKKKSAQMLEEA-RRREDSLSDSSQQLqveellmamEKVKQ 842
Cdd:PRK12704 43 ILEEAKKEAEAI-KKEALLE--AKEEIHKLRNEFEKELRERRNELQKLEKRlLQKEENLDRKLELL---------EKREE 110
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720416779 843 ELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEallaaisekDANIALLElsSSKKKTQEEVAALKRE 920
Cdd:PRK12704 111 ELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAE---------EAKEILLE--KVEEEARHEAAVLIKE 177
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
473-670 |
1.19e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 1.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 473 QELSRKDTELLALQTKLETLtnqfsdskQHIEVLKESLTAKEQRAAILQTEVDALRLrlEEKETMLNKKTKQIQDMAEEK 552
Cdd:COG4913 235 DDLERAHEALEDAREQIELL--------EPIRELAERYAAARERLAELEYLRAALRL--WFAQRRLELLEAELEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 553 GTQAGEIHDLKDMLDVKERKVNVLQ--------KKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAD 624
Cdd:COG4913 305 ARLEAELERLEARLDALREELDELEaqirgnggDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAA 384
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1720416779 625 KERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSE 670
Cdd:COG4913 385 LRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIAS 430
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
464-689 |
1.28e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.14 E-value: 1.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 464 LQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEeketmlnkktK 543
Cdd:COG3883 21 KQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELG----------E 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 544 QIQDMAEEKGT--------QAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTAL 615
Cdd:COG3883 91 RARALYRSGGSvsyldvllGSESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAK 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720416779 616 TTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSG 689
Cdd:COG3883 171 AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 244
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
669-941 |
1.32e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 1.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 669 SEKEASLLDIKEHASSLASSGLKKDSRLKTLEiALEQKKEECLKMESQLKKaheatLEARASPEMSDRIQQLEREISRyk 748
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLE-RLRREREKAERYQALLKE-----KREYEGYELLKEKEALERQKEA-- 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 749 desskAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVE-KKKSAQMLEEARRREDSLSDSSQQ 827
Cdd:TIGR02169 242 -----IERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRvKEKIGELEAEIASLERSIAEKERE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 828 lqveellmaMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQE--ALLAAISEKDANIALL--EL 903
Cdd:TIGR02169 317 ---------LEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEleDLRAELEEVDKEFAETrdEL 387
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1720416779 904 SSSKKK---TQEEVAALKREKDRLVQQLKQQTQNRMKLMAD 941
Cdd:TIGR02169 388 KDYREKlekLKREINELKRELDRLQEELQRLSEELADLNAA 428
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
621-852 |
2.70e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 2.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 621 ALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLE 700
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 701 IALEQKKEECLKM-------------------ESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRL 761
Cdd:COG4942 97 AELEAQKEELAELlralyrlgrqpplalllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 762 LEILKEVENEKndkdkkiAELERQVKDQNKKVANLKHkeqvEKKKSAQMLEEARRREDSLSDSSQQLQVEELLMAMEKVK 841
Cdd:COG4942 177 EALLAELEEER-------AALEALKAERQKLLARLEK----ELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
250
....*....|.
gi 1720416779 842 QELESMKAKLS 852
Cdd:COG4942 246 AGFAALKGKLP 256
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
425-606 |
4.49e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.79 E-value: 4.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 425 QMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKR---------AAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQ 495
Cdd:COG3206 169 RREEARKALEFLEEQLPELRKELEEAEAALEEFRQKnglvdlseeAKLLLQQLSELESQLAEARAELAEAEARLAALRAQ 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 496 FSDSKQHIEVLKES--LTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEI-HDLKDMLDVKERK 572
Cdd:COG3206 249 LGSGPDALPELLQSpvIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRIlASLEAELEALQAR 328
|
170 180 190
....*....|....*....|....*....|....*..
gi 1720416779 573 VNVLQKKIENLQEQLR---DKEKQMSSLKERVKSLQA 606
Cdd:COG3206 329 EASLQAQLAQLEARLAelpELEAELRRLEREVEVARE 365
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
512-878 |
7.77e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 50.36 E-value: 7.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 512 AKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKE 591
Cdd:pfam02463 150 MKPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 592 KQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLqgdLSEK 671
Cdd:pfam02463 230 DYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSEL---LKLE 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 672 EASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEEclkmESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDES 751
Cdd:pfam02463 307 RRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKEL----KELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 752 SKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANlKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQVE 831
Cdd:pfam02463 383 SERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKK-EELEILEEEEESIELKQGKLTEEKEELEKQELKLL 461
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1720416779 832 ELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEE 878
Cdd:pfam02463 462 KDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSG 508
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
593-824 |
7.86e-06 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 50.01 E-value: 7.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 593 QMSSL-KERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEK 671
Cdd:PHA02562 167 EMDKLnKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 672 EASLLDIKEHASSLASSGLKKDSRLKTL--EIALEQKKEECL-----------KMESQLKKAHEATLEARaspEMSDRIQ 738
Cdd:PHA02562 247 VMDIEDPSAALNKLNTAAAKIKSKIEQFqkVIKMYEKGGVCPtctqqisegpdRITKIKDKLKELQHSLE---KLDTAID 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 739 QLEREISRYKDESSKA---QTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEAR 815
Cdd:PHA02562 324 ELEEIMDEFNEQSKKLlelKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKY 403
|
250
....*....|..
gi 1720416779 816 RRE---DSLSDS 824
Cdd:PHA02562 404 HRGivtDLLKDS 415
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
274-944 |
7.91e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 50.36 E-value: 7.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 274 HERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQK 353
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 354 EKENNMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVyrSHS 433
Cdd:pfam02463 246 LRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESE--KEK 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 434 KFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAK 513
Cdd:pfam02463 324 KKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 514 EQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQ 593
Cdd:pfam02463 404 EKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQ 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 594 MSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEID-TYKKDLKDLREKVSLLQGDLSEKE 672
Cdd:pfam02463 484 EQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVeNYKVAISTAVIVEVSATADEVEER 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 673 ASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARA---SPEMSDRIQQLEREISRYKD 749
Cdd:pfam02463 564 QKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKrakVVEGILKDTELTKLKESAKA 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 750 ESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQ 829
Cdd:pfam02463 644 KESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELL 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 830 VEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERrkhLEEVLEMKQEALLAAISEKDANIALLElssSKKK 909
Cdd:pfam02463 724 ADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEK---SELSLKEKELAEEREKTEKLKVEEEKE---EKLK 797
|
650 660 670
....*....|....*....|....*....|....*
gi 1720416779 910 TQEEVAALKREKDRLVQQLKQQTQNRMKLMADNYE 944
Cdd:pfam02463 798 AQEEELRALEEELKEEAELLEEEQLLIEQEEKIKE 832
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
529-924 |
8.42e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 49.90 E-value: 8.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 529 LRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADT 608
Cdd:PRK01156 169 DKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 609 TNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEID-------------TYKKDLKDLREKVSLLQGDLS------ 669
Cdd:PRK01156 249 DMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDpvyknrnyindyfKYKNDIENKKQILSNIDAEINkyhaii 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 670 --------------EKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPE-MS 734
Cdd:PRK01156 329 kklsvlqkdyndyiKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDaIK 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 735 DRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKN-----------DKDKKIAELERQVKDQNKKVANLKHKEQvE 803
Cdd:PRK01156 409 KELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEmlngqsvcpvcGTTLGEEKSNHIINHYNEKKSRLEEKIR-E 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 804 KKKSAQMLEEARRREDSLSDSSQQLQVEELLMA---MEKVKQELESMKAKLSstqqSLAEKETHLTNLRAERRKHLEEVL 880
Cdd:PRK01156 488 IEIEVKDIDEKIVDLKKRKEYLESEEINKSINEynkIESARADLEDIKIKIN----ELKDKHDKYEEIKNRYKSLKLEDL 563
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 1720416779 881 EMKQEALLAAISEkdanIALLELSSSKKKTQEEVAALKREKDRL 924
Cdd:PRK01156 564 DSKRTSWLNALAV----ISLIDIETNRSRSNEIKKQLNDLESRL 603
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
390-935 |
8.79e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 50.05 E-value: 8.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 390 KISSMERGLRDLEEEIQMLKSngalSSEEREEEMKQMEVYRShsKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIG 469
Cdd:TIGR00606 256 EIEHNLSKIMKLDNEIKALKS----RKKQMEKDNSELELKME--KVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 470 ---QVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKE-----QRAAILQTEVD----ALRLRLEEKETM 537
Cdd:TIGR00606 330 klnKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLeldgfERGPFSERQIKnfhtLVIERQEDEAKT 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 538 LNKKTKQIQDMAEEKGTQAGEIHD-LKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALT 616
Cdd:TIGR00606 410 AAQLCADLQSKERLKQEQADEIRDeKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSK 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 617 TLEEALAD--KERTIERLKEQRDRDEREKQEEIDTYKKDL-KDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKD 693
Cdd:TIGR00606 490 AEKNSLTEtlKKEVKSLQNEKADLDRKLRKLDQEMEQLNHhTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYF 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 694 SRLKTLEIALEQKKEECLKMESQLKKaheatlearaspeMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKn 773
Cdd:TIGR00606 570 PNKKQLEDWLHSKSKEINQTRDRLAK-------------LNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQ- 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 774 DKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEAR----------RREDSLSDSSQQLQ---------VEELL 834
Cdd:TIGR00606 636 DEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQsccpvcqrvfQTEAELQEFISDLQsklrlapdkLKSTE 715
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 835 MAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMK-----QEALLAAI--SEKDANIAL------- 900
Cdd:TIGR00606 716 SELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKndieeQETLLGTImpEEESAKVCLtdvtime 795
|
570 580 590
....*....|....*....|....*....|....*....
gi 1720416779 901 ---LELSSSKKKTQEEVAALKR-EKDRLVQQLKQQTQNR 935
Cdd:TIGR00606 796 rfqMELKDVERKIAQQAAKLQGsDLDRTVQQVNQEKQEK 834
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
464-791 |
9.66e-06 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 49.13 E-value: 9.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 464 LQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTK 543
Cdd:COG4372 43 LQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQK 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 544 QIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERvkSLQADTTNTDTALTTLEEALA 623
Cdd:COG4372 123 ERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEA--EAEQALDELLKEANRNAEKEE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 624 DKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIAL 703
Cdd:COG4372 201 ELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEI 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 704 EQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELE 783
Cdd:COG4372 281 AALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGLLDNDVLELLS 360
|
....*...
gi 1720416779 784 RQVKDQNK 791
Cdd:COG4372 361 KGAEAGVA 368
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
736-893 |
1.13e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 48.00 E-value: 1.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 736 RIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVAnlKHKEQVEKKKSAQMLEEAR 815
Cdd:COG1579 18 ELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIK--KYEEQLGNVRNNKEYEALQ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 816 RREDSLSDSSQQL--QVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEmKQEALLAAISE 893
Cdd:COG1579 96 KEIESLKRRISDLedEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA-EREELAAKIPP 174
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
260-931 |
1.41e-05 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 49.36 E-value: 1.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 260 AELTEENFQRLhaehERQAKELFLLRKTLEEMELRIETQKQTLNARdesikkllemlqskGLSAKATEEDHERTRR-LAE 338
Cdd:pfam07111 65 AELISRQLQEL----RRLEEEVRLLRETSLQQKMRLEAQAMELDAL--------------AVAEKAGQAEAEGLRAaLAG 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 339 AEMHVHHLESLLEQKEKENNMLREEMHrrfenapdSAKTKALQTVIEMKDSKISSMERGLRDLEeeiqmlksngalssEE 418
Cdd:pfam07111 127 AEMVRKNLEEGSQRELEEIQRLHQEQL--------SSLTQAHEEALSSLTSKAEGLEKSLNSLE--------------TK 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 419 REEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAglqseiGQVKQELSRKDTElLALQTKLETLtnqfsd 498
Cdd:pfam07111 185 RAGEAKQLAEAQKEAELLRKQLSKTQEELEAQVTLVESLRKYVG------EQVPPEVHSQTWE-LERQELLDTM------ 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 499 skQHIEVLKESLTAKEQraaILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAgeihdlKDMLDVKERKVNVLQK 578
Cdd:pfam07111 252 --QHLQEDRADLQATVE---LLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEFPKKC------RSLLNRWREKVFALMV 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 579 KIENLQEQLRDKEKQmssLKERVKSLQADTTNTDTALTTLEEALADK--ERTIERLK--------EQRDRDEREKQEEID 648
Cdd:pfam07111 321 QLKAQDLEHRDSVKQ---LRGQVAELQEQVTSQSQEQAILQRALQDKaaEVEVERMSakglqmelSRAQEARRRQQQQTA 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 649 TYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLA---SSGLKKDSRLKTL---EIALEQkkeecLKMESQLKKAHE 722
Cdd:pfam07111 398 SAEEQLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSnrlSYAVRKVHTIKGLmarKVALAQ-----LRQESCPPPPPA 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 723 ATLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEilkEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQV 802
Cdd:pfam07111 473 PPVDADLSLELEQLREERNRLDAELQLSAHLIQQEVGRARE---QGEAERQQLSEVAQQLEQELQRAQESLASVGQQLEV 549
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 803 EKKKSAQMLEEARRREDSLSdSSQQLQVEELlmaMEKVKQELESMKAKLSSTQQSLAEKethltnlraeRRKHLEEVLEM 882
Cdd:pfam07111 550 ARQGQQESTEEAASLRQELT-QQQEIYGQAL---QEKVAEVETRLREQLSDTKRRLNEA----------RREQAKAVVSL 615
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....
gi 1720416779 883 KQEALLAAiSEKDANIALLELSSSKKKTQEE-----VAALKREKDRLVQQLKQQ 931
Cdd:pfam07111 616 RQIQHRAT-QEKERNQELRRLQDEARKEEGQrlarrVQELERDKNLMLATLQQE 668
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
626-829 |
1.55e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 1.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 626 ERTIERLKEQRD--RDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDikehasslassglkkdSRLKTLEIAL 703
Cdd:COG4913 241 HEALEDAREQIEllEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLE----------------AELEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 704 EQKKEECLKMESQLKKAHEATLEARASPEMS--DRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAE 781
Cdd:COG4913 305 ARLEAELERLEARLDALREELDELEAQIRGNggDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAA 384
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1720416779 782 LERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQ 829
Cdd:COG4913 385 LRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
564-811 |
1.56e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 48.86 E-value: 1.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 564 DMLDVKE-RKVNVLQK-KIENLQEQLRDKEKQMSSLKERVK-------SLQADTTNTDTALTTLEEALADKERTIERLKE 634
Cdd:PHA02562 158 DLLDISVlSEMDKLNKdKIRELNQQIQTLDMKIDHIQQQIKtynknieEQRKKNGENIARKQNKYDELVEEAKTIKAEIE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 635 QRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLS--EKEASLL-----------DIKEHASSLAssglKKDSRLKTLEI 701
Cdd:PHA02562 238 ELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEqfQKVIKMYekggvcptctqQISEGPDRIT----KIKDKLKELQH 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 702 ALEQKKEECLKMESQLKKAHEATLEARaspEMSDRIQQLEREISRYKDESSKAQTEVDRLleilkevENEKNDKDKKIAE 781
Cdd:PHA02562 314 SLEKLDTAIDELEEIMDEFNEQSKKLL---ELKNKISTNKQSLITLVDKAKKVKAAIEEL-------QAEFVDNAEELAK 383
|
250 260 270
....*....|....*....|....*....|
gi 1720416779 782 LERQVKDQNKKVANLKhKEQVEKKKSAQML 811
Cdd:PHA02562 384 LQDELDKIVKTKSELV-KEKYHRGIVTDLL 412
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
473-605 |
2.09e-05 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 48.04 E-value: 2.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 473 QELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEK 552
Cdd:PRK09039 46 REISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQEL 125
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720416779 553 GTQAGEIHDlkdmldvKERKVNVLQKKIENLQEQL------------RDKEKQM----------SSLKERVKSLQ 605
Cdd:PRK09039 126 DSEKQVSAR-------ALAQVELLNQQIAALRRQLaaleaaldasekRDRESQAkiadlgrrlnVALAQRVQELN 193
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
753-1054 |
2.42e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.51 E-value: 2.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 753 KAQTEVDRLLEILKEVENEKN------DKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQM-LEEARRREDSLSDSS 825
Cdd:TIGR02168 183 RTRENLDRLEDILNELERQLKslerqaEKAERYKELKAELRELELALLVLRLEELREELEELQEeLKEAEEELEELTAEL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 826 Q--QLQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRaERRKHLEEVLEMKQEALLaaisekdaniallEL 903
Cdd:TIGR02168 263 QelEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILR-ERLANLERQLEELEAQLE-------------EL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 904 SSSKKKTQEEVAALKREKDRLvQQLKQQTQNRMKLMADNYEDDHfRSSRSNQTNHKPSPDQIIQPLLELDQNRSKLKLYI 983
Cdd:TIGR02168 329 ESKLDELAEELAELEEKLEEL-KEELESLEAELEELEAELEELE-SRLEELEEQLETLRSKVAQLELQIASLNNEIERLE 406
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720416779 984 GHLTALCHDRDPLILRGLTppasynADGEQAAWENELQKMTQEQLQNELEKVEGDNAELQEFANTILQQIA 1054
Cdd:TIGR02168 407 ARLERLEDRRERLQQEIEE------LLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELE 471
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
445-938 |
2.44e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 48.63 E-value: 2.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 445 EELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDS----------KQHIEVLKESLTAK- 513
Cdd:pfam01576 5 EEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAeemrarlaarKQELEEILHELESRl 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 514 ---EQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDK 590
Cdd:pfam01576 85 eeeEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 591 EKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERT---IERLKEQRDRDEREKQEEIDTYKKDLKDLREKV------ 661
Cdd:pfam01576 165 TSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGrqeLEKAKRKLEGESTDLQEQIAELQAQIAELRAQLakkeee 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 662 ---------------SLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLkmESQLKKAHEATLE 726
Cdd:pfam01576 245 lqaalarleeetaqkNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELE--DTLDTTAAQQELR 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 727 ARASPEMSDRIQQLEREISRY----KDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHK--- 799
Cdd:pfam01576 323 SKREQEVTELKKALEEETRSHeaqlQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAkqd 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 800 -EQVEKKKSAQMLE------EARRREDSLSDSSQQLQVE-----ELLMAME----KVKQELESMKAKLSSTQQSLAEKET 863
Cdd:pfam01576 403 sEHKRKKLEGQLQElqarlsESERQRAELAEKLSKLQSElesvsSLLNEAEgkniKLSKDVSSLESQLQDTQELLQEETR 482
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 864 HLTNLRA------ERRKHLEEVLEMKQEALLAAisEKDANIALLELSSSKKKTQEEVAA----------LKREKDRLVQQ 927
Cdd:pfam01576 483 QKLNLSTrlrqleDERNSLQEQLEEEEEAKRNV--ERQLSTLQAQLSDMKKKLEEDAGTlealeegkkrLQRELEALTQQ 560
|
570
....*....|.
gi 1720416779 928 LKQQTQNRMKL 938
Cdd:pfam01576 561 LEEKAAAYDKL 571
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
436-626 |
3.46e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.52 E-value: 3.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 436 MKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSD----------SKQHIEV 505
Cdd:COG3883 28 LQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEraralyrsggSVSYLDV 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 506 LKESLTAKE--QRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENL 583
Cdd:COG3883 108 LLGSESFSDflDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQL 187
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1720416779 584 QEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKE 626
Cdd:COG3883 188 SAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
334-671 |
3.59e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 3.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 334 RRLAEAEMHVHHLESLLEQKEKEnnmlREEMHRRFEnapdsaktkALQTVIEMKDSKI--SSMERGLRDLEEEIQMLKSN 411
Cdd:COG4913 617 AELAELEEELAEAEERLEALEAE----LDALQERRE---------ALQRLAEYSWDEIdvASAEREIAELEAELERLDAS 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 412 GAlsseereeemkqmevyrshskfmknKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLET 491
Cdd:COG4913 684 SD-------------------------DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEA 738
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 492 LTNQFS-DSKQHIEVLKESLTAKEQRAAI---LQTEVDALRLRLEEKETMLNKKTKQIQ----DMAEEKGTQAGEIHDLK 563
Cdd:COG4913 739 AEDLARlELRALLEERFAAALGDAVERELrenLEERIDALRARLNRAEEELERAMRAFNrewpAETADLDADLESLPEYL 818
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 564 DMLDvkerkvNVLQKKIENLQEQLRDKEKQMSslKERVKSLQAdttntdtaltTLEEALADKERTIERLKE-------QR 636
Cdd:COG4913 819 ALLD------RLEEDGLPEYEERFKELLNENS--IEFVADLLS----------KLRRAIREIKERIDPLNDslkripfGP 880
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1720416779 637 DRD-----EREKQEEIDTYKKDLKDLREKVSLLQGDLSEK 671
Cdd:COG4913 881 GRYlrleaRPRPDPEVREFRQELRAVTSGASLFDEELSEA 920
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
292-901 |
5.01e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.41 E-value: 5.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 292 ELRIETQKQTLNARDESIKKLLEMLQSkgLSAKATEEDHERTRRLAEAEMHVHHLESllEQKEKENNMLREEMHRRFENA 371
Cdd:pfam05483 175 EYEREETRQVYMDLNNNIEKMILAFEE--LRVQAENARLEMHFKLKEDHEKIQHLEE--EYKKEINDKEKQVSLLLIQIT 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 372 PDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKVE-------QLK 444
Cdd:pfam05483 251 EKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQiatkticQLT 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 445 EElssKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEV 524
Cdd:pfam05483 331 EE---KEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVEL 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 525 DALRLRLEEKETMLNKKtKQIQDMAEEkgtQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLK-----E 599
Cdd:pfam05483 408 EELKKILAEDEKLLDEK-KQFEKIAEE---LKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKtelekE 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 600 RVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEE-----IDTYKKDLKDLREKVSLLQGDLSEK--- 671
Cdd:pfam05483 484 KLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEErmlkqIENLEEKEMNLRDELESVREEFIQKgde 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 672 -EASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHE--ATLEARASPEmSDRIQQLEREISRYK 748
Cdd:pfam05483 564 vKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQenKALKKKGSAE-NKQLNAYEIKVNKLE 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 749 DESSKAQTEVDRLLEIL-KEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQ 827
Cdd:pfam05483 643 LELASAKQKFEEIIDNYqKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEE 722
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720416779 828 LQVEelLMAMEKVKQELESMKAKLsstqqslaekETHLTNLRAERRKhLEEVLEMKQEALLAAISEKDANIALL 901
Cdd:pfam05483 723 RDSE--LGLYKNKEQEQSSAKAAL----------EIELSNIKAELLS-LKKQLEIEKEEKEKLKMEAKENTAIL 783
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
735-916 |
6.42e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.75 E-value: 6.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 735 DRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEA 814
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 815 RRREDSLS---------------------------DSSQQLQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTN 867
Cdd:COG3883 96 YRSGGSVSyldvllgsesfsdfldrlsalskiadaDADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEA 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1720416779 868 LRAERRKHLEEvLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAA 916
Cdd:COG3883 176 QQAEQEALLAQ-LSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAA 223
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
344-874 |
7.12e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 47.35 E-value: 7.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 344 HHLESLLEQKEKENNMLREEMHR--RFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREE 421
Cdd:TIGR01612 1129 HHIKALEEIKKKSENYIDEIKAQinDLEDVADKAISNDDPEEIEKKIENIVTKIDKKKNIYDEIKKLLNEIAEIEKDKTS 1208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 422 EMKQMEVYRSHSKFM-KNKVEQLKEELSSKDAQGEELKKRAAGLqSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSK 500
Cdd:TIGR01612 1209 LEEVKGINLSYGKNLgKLFLEKIDEEKKKSEHMIKAMEAYIEDL-DEIKEKSPEIENEMGIEMDIKAEMETFNISHDDDK 1287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 501 QHievlkeSLTAKEQRAAILQTEVDALRLRLE-EKETMLNKKTKQIQDMAEEKGTQAGEIH----------------DLK 563
Cdd:TIGR01612 1288 DH------HIISKKHDENISDIREKSLKIIEDfSEESDINDIKKELQKNLLDAQKHNSDINlylneianiynilklnKIK 1361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 564 DMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKslqadttnTDTALTTLEEALADKE--RTIERLKEQRDRDER 641
Cdd:TIGR01612 1362 KIIDEVKEYTKEIEENNKNIKDELDKSEKLIKKIKDDIN--------LEECKSKIESTLDDKDidECIKKIKELKNHILS 1433
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 642 EkQEEIDTYKKDLKDLREKVSLLQGDL-------------------SEKEASLLDIKEHASSLASSGLKKDSRLKTLE-- 700
Cdd:TIGR01612 1434 E-ESNIDTYFKNADENNENVLLLFKNIemadnksqhilkikkdnatNDHDFNINELKEHIDKSKGCKDEADKNAKAIEkn 1512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 701 -IALEQKKEECLKMES-----------------------QLKKAH-EATLEARASPEmsdRIQQLEREISRYKDESSKAQ 755
Cdd:TIGR01612 1513 kELFEQYKKDVTELLNkysalaiknkfaktkkdseiiikEIKDAHkKFILEAEKSEQ---KIKEIKKEKFRIEDDAAKND 1589
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 756 TEVDRLLEILKEVENEKNdKDKKIAELERQVKDqnkkvaNLKHKEQVEKKKSaqmleearrredSLSDSSQQLQVEELLM 835
Cdd:TIGR01612 1590 KSNKAAIDIQLSLENFEN-KFLKISDIKKKIND------CLKETESIEKKIS------------SFSIDSQDTELKENGD 1650
|
570 580 590
....*....|....*....|....*....|....*....
gi 1720416779 836 AMEKVKQELESMKAKlsstQQSLAEKETHLTNLRAERRK 874
Cdd:TIGR01612 1651 NLNSLQEFLESLKDQ----KKNIEDKKKELDELDSEIEK 1685
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
619-772 |
7.20e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 46.77 E-value: 7.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 619 EEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEkeaslldikehasslassglkKDSRLKT 698
Cdd:COG2433 387 EKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEE---------------------KDERIER 445
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720416779 699 LEIALEQKKEEclkMESQLKKAHEATLEARaspemsdRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEK 772
Cdd:COG2433 446 LERELSEARSE---ERREIRKDREISRLDR-------EIERLERELEEERERIEELKRKLERLKELWKLEHSGE 509
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
436-638 |
1.30e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.53 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 436 MKNKVEQLkEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLtnqfsdskqhievlkesltakEQ 515
Cdd:COG1579 2 MPEDLRAL-LDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDL---------------------EK 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 516 RAAILQTEVDALRLRLEEKETMLN--KKTKQIQDMAEekgtqagEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQ 593
Cdd:COG1579 60 EIKRLELEIEEVEARIKKYEEQLGnvRNNKEYEALQK-------EIESLKRRISDLEDEILELMERIEELEEELAELEAE 132
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1720416779 594 MSSLKERVKSLQAdttntdtaltTLEEALADKERTIERLKEQRDR 638
Cdd:COG1579 133 LAELEAELEEKKA----------ELDEELAELEAELEELEAEREE 167
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
716-924 |
1.48e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 716 QLKKAHEATLEARAS-------PEMSDRIQQLEREISRYKDESSK-----AQTEVDRLLEILKEVENEKNDKDKKIAELE 783
Cdd:COG4913 236 DLERAHEALEDAREQiellepiRELAERYAAARERLAELEYLRAAlrlwfAQRRLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 784 RQVKDQNKKVANLKhkeqvekkksAQMLEEARRREDSLSDSSQQLQVEEllmamEKVKQELESMKAKLSSTQQSLAEKET 863
Cdd:COG4913 316 ARLDALREELDELE----------AQIRGNGGDRLEQLEREIERLEREL-----EERERRRARLEALLAALGLPLPASAE 380
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720416779 864 HLTNLRAERRKHLEEVlemkqEALLAAISEkdaniALLELSSSKKKTQEEVAALKREKDRL 924
Cdd:COG4913 381 EFAALRAEAAALLEAL-----EEELEALEE-----ALAEAEAALRDLRRELRELEAEIASL 431
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
277-530 |
1.63e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 277 QAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQskglsaKATEEDHERTRRLAEAEMHVHHLESLLEQKEKE 356
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA------ALERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 357 NNMLREEMHRRFENapdsaktkalqtviemkdskissMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFM 436
Cdd:COG4942 92 IAELRAELEAQKEE-----------------------LAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPAR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 437 KNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQR 516
Cdd:COG4942 149 REQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
250
....*....|....
gi 1720416779 517 AAILQTEVDALRLR 530
Cdd:COG4942 229 IARLEAEAAAAAER 242
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
577-850 |
1.66e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.88 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 577 QKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLK-EQRDRD-EREKQEEIDTYKKDL 654
Cdd:pfam17380 298 QERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRqEERKRElERIRQEEIAMEISRM 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 655 KDLrEKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMS 734
Cdd:pfam17380 378 REL-ERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQ 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 735 DRIQQLER-----------EISRYKDESSKAQTEVDRLLEILKEVENEKN---DKDKKIAELERQVKDQNKKVANLKHKE 800
Cdd:pfam17380 457 ERQQQVERlrqqeeerkrkKLELEKEKRDRKRAEEQRRKILEKELEERKQamiEEERKRKLLEKEMEERQKAIYEEERRR 536
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1720416779 801 QVEKKKSAQMLEEARRR--EDSLSDSSQQLQVEELLMAMEKVKQELESMKAK 850
Cdd:pfam17380 537 EAEEERRKQQEMEERRRiqEQMRKATEERSRLEAMEREREMMRQIVESEKAR 588
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
637-832 |
1.70e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.21 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 637 DRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQ 716
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 717 LKKAH------EATLEARASPEMSDRIQQLER-------EISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELE 783
Cdd:COG3883 95 LYRSGgsvsylDVLLGSESFSDFLDRLSALSKiadadadLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1720416779 784 RQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQVEE 832
Cdd:COG3883 175 AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAA 223
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
437-932 |
1.80e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 45.50 E-value: 1.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 437 KNKVEQLKEELSSKDAqgeELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQR 516
Cdd:pfam05557 8 KARLSQLQNEKKQMEL---EHKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRLKKKY 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 517 AAI---LQTEVDALRLRLEEKETMLNKKTKQIQDMAE----EKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQ--- 586
Cdd:pfam05557 85 LEAlnkKLNEKESQLADAREVISCLKNELSELRRQIQraelELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQqss 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 587 LRDKEKQMSSLkERVKSLQADTTNTDTALTTLEEALADKERTIERLkeqrdrdeREKQEEIDTYKKDLKDLREKVSLLQG 666
Cdd:pfam05557 165 LAEAEQRIKEL-EFEIQSQEQDSEIVKNSKSELARIPELEKELERL--------REHNKHLNENIENKLLLKEEVEDLKR 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 667 DLSEKEaslldikehasslassglKKDSRLKTLEIALEQKKEEclkMESQLKKAHEATLEARASPEMSDRIQQLEREISR 746
Cdd:pfam05557 236 KLEREE------------------KYREEAATLELEKEKLEQE---LQSWVKLAQDTGLNLRSPEDLSRRIEQLQQREIV 294
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 747 YKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLE--EARRREDSLSDS 824
Cdd:pfam05557 295 LKEENSSLTSSARQLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAilESYDKELTMSNY 374
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 825 SQQL--QVEELLMAMEKVKQELESMKAKLsstqqSLAEKETHLTNLRAerrkhleEVLEMKQEALLAAISEKDANIALLE 902
Cdd:pfam05557 375 SPQLleRIEEAEDMTQKMQAHNEEMEAQL-----SVAEEELGGYKQQA-------QTLERELQALRQQESLADPSYSKEE 442
|
490 500 510
....*....|....*....|....*....|...
gi 1720416779 903 LSSSKKKTQE---EVAALKREKDRLVQQLKQQT 932
Cdd:pfam05557 443 VDSLRRKLETlelERQRLREQKNELEMELERRC 475
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
632-832 |
2.15e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.39 E-value: 2.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 632 LKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSE--KEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEE 709
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 710 CLKMESQLKKAHEATLEARASPEMSD---RIQQLEREI----SRYKDESSK---AQTEVDRLL-EILKEVENEKNDKDKK 778
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSPVIQQlraQLAELEAELaelsARYTPNHPDviaLRAQIAALRaQLQQEAQRILASLEAE 321
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 779 IAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRRE------DSLSDSSQQLQVEE 832
Cdd:COG3206 322 LEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEvarelyESLLQRLEEARLAE 381
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
335-926 |
2.88e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.17 E-value: 2.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 335 RLAEAEMHVHHLESLLEQKEKENNMLREEMHRRFENAPDSAKTKALQTviemkdSKISSMERGLRDLEEEIqmlksngal 414
Cdd:pfam01576 20 RQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLA------ARKQELEEILHELESRL--------- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 415 ssEEREEEMKQMEVYRshsKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVkqelsrkDTELLALQTKLETLTN 494
Cdd:pfam01576 85 --EEEEERSQQLQNEK---KKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKL-------EEDILLLEDQNSKLSK 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 495 QFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDmldvkerKVN 574
Cdd:pfam01576 153 ERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQE-------QIA 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 575 VLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQ---EEIDTYK 651
Cdd:pfam01576 226 ELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRdlgEELEALK 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 652 KDLKDLREKVSLLQGDLSEKEASLLDIKE--------HASSLASSGLKKDSRLKTLEIALEQKK--------------EE 709
Cdd:pfam01576 306 TELEDTLDTTAAQQELRSKREQEVTELKKaleeetrsHEAQLQEMRQKHTQALEELTEQLEQAKrnkanlekakqaleSE 385
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 710 CLKMESQLKKAHEATLEARAS--------PEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAE 781
Cdd:pfam01576 386 NAELQAELRTLQQAKQDSEHKrkklegqlQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSS 465
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 782 LERQVKDQnkkvanlkhKEQVEKKKSAQMLEEARRREDSLSDSSQQLQVEELLMAMEKVKQELESMKAKLSSTQQSLAEK 861
Cdd:pfam01576 466 LESQLQDT---------QELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEED 536
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720416779 862 ETHLTNLRAERRKHLEEVlemkqEALLAAISEKDAniALLELSSSKKKTQEEVAALKREKDRLVQ 926
Cdd:pfam01576 537 AGTLEALEEGKKRLQREL-----EALTQQLEEKAA--AYDKLEKTKNRLQQELDDLLVDLDHQRQ 594
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
574-795 |
3.04e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.77 E-value: 3.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 574 NVLQKKIENLQEQ----LRDKEKQMSSLKErvkslqadttntdtalttleEALADKERTIERLKEQRDRDEREKQEEIdt 649
Cdd:PRK12704 27 KIAEAKIKEAEEEakriLEEAKKEAEAIKK--------------------EALLEAKEEIHKLRNEFEKELRERRNEL-- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 650 yKKDLKDLREKVSLLqgdlsEKEASLLDikehasslassglKKDSRLKTLEIALEQKKEECLKMESQLKKAHEatleara 729
Cdd:PRK12704 85 -QKLEKRLLQKEENL-----DRKLELLE-------------KREEELEKKEKELEQKQQELEKKEEELEELIE------- 138
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720416779 730 spemsDRIQQLEReISRYKDESSKAQtevdrlleILKEVENE-KNDKDKKIAELERQVKDQNKKVAN 795
Cdd:PRK12704 139 -----EQLQELER-ISGLTAEEAKEI--------LLEKVEEEaRHEAAVLIKEIEEEAKEEADKKAK 191
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
264-590 |
3.08e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.83 E-value: 3.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 264 EENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSkgLSAKATEEdheRTRRLAEAEMHV 343
Cdd:pfam12128 610 EEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQS--EKDKKNKA---LAERKDSANERL 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 344 HHLESLLEQKEKENNMLREEMHRRFENApDSAKTKALQTVIEMKDSKISSmerglrdLEEEIQMLKSNGALSSEEREEEM 423
Cdd:pfam12128 685 NSLEAQLKQLDKKHQAWLEEQKEQKREA-RTEKQAYWQVVEGALDAQLAL-------LKAAIAARRSGAKAELKALETWY 756
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 424 KQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEelKKRAAGLQSEIGQVKQELSRKD---TELLALQTKLE----TLTNQF 496
Cdd:pfam12128 757 KRDLASLGVDPDVIAKLKREIRTLERKIERIA--VRRQEVLRYFDWYQETWLQRRPrlaTQLSNIERAISelqqQLARLI 834
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 497 SDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMlnkktKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVL 576
Cdd:pfam12128 835 ADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATL-----KEDANSEQAQGSIGERLAQLEDLKLKRDYLSESV 909
|
330
....*....|....
gi 1720416779 577 QKKIENLQEQLRDK 590
Cdd:pfam12128 910 KKYVEHFKNVIADH 923
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
387-826 |
3.36e-04 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 45.04 E-value: 3.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 387 KDSKISSMERGLRDLEEEIQMLKsngalssEEREEEM-----KQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRA 461
Cdd:PTZ00108 997 KEYLLGKLERELARLSNKVRFIK-------HVINGELvitnaKKKDLVKELKKLGYVRFKDIIKKKSEKITAEEEEGAEE 1069
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 462 AGLQSEIGQVKQELSRKDTELLaLQTKLETLTnqfsdsKQHIEVLKESLTAKEQRAAILqtevdalrlrleeketmlnkK 541
Cdd:PTZ00108 1070 DDEADDEDDEEELGAAVSYDYL-LSMPIWSLT------KEKVEKLNAELEKKEKELEKL--------------------K 1122
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 542 TKQIQDMAEEkgtqageihDLKDMLDVKERKVNVLQKKIEnlqeqlrdkEKQMSSLKERVKSLQADTTNTDTALTTLEEA 621
Cdd:PTZ00108 1123 NTTPKDMWLE---------DLDKFEEALEEQEEVEEKEIA---------KEQRLKSKTKGKASKLRKPKLKKKEKKKKKS 1184
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 622 LADKERTIERLKEQRdRDEREKQEEIDtyKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKtlei 701
Cdd:PTZ00108 1185 SADKSKKASVVGNSK-RVDSDEKRKLD--DKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDN---- 1257
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 702 alEQKKEECLKMESQLKKAHEATLEARASPEMSDriQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAE 781
Cdd:PTZ00108 1258 --DEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPS--KRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTAR 1333
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 1720416779 782 lerqvkdqnkkvaNLKHKEQVEKKKSAQMLEEARRREDSLSDSSQ 826
Cdd:PTZ00108 1334 -------------KKKSKTRVKQASASQSSRLLRRPRKKKSDSSS 1365
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
532-981 |
3.57e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.71 E-value: 3.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 532 EEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNT 611
Cdd:pfam05483 229 EEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRS 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 612 DTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLK 691
Cdd:pfam05483 309 MSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 692 KDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREisrykdesskaqtevdrLLEILKEVENE 771
Cdd:pfam05483 389 KSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQE-----------------LIFLLQAREKE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 772 KNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEArrreDSLSDSSQQLQVEELLMAMEKVKQELESMKAKL 851
Cdd:pfam05483 452 IHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHC----DKLLLENKELTQEASDMTLELKKHQEDIINCKK 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 852 SSTQ-----QSLAEKETHLTNLRAERRKHLEEvlemKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKrekdrlVQ 926
Cdd:pfam05483 528 QEERmlkqiENLEEKEMNLRDELESVREEFIQ----KGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENK------CN 597
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 1720416779 927 QLKQQTQNRMKLMADNYEDDHFRSSRSNQTNHKPSPDQIIQPLLELDQNRSKLKL 981
Cdd:pfam05483 598 NLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKF 652
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
331-772 |
3.89e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 3.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 331 ERTRRLAEAEMHVHHLESLLEQKEKENNMLREE---MHRRFENAPDSAKTKALQTVIEMKDSKISSMERG---LRDLEEE 404
Cdd:COG4717 85 EKEEEYAELQEELEELEEELEELEAELEELREElekLEKLLQLLPLYQELEALEAELAELPERLEELEERleeLRELEEE 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 405 IQMLKSNGALSSEEREEEMKQMEVYrshskfMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLA 484
Cdd:COG4717 165 LEELEAELAELQEELEELLEQLSLA------TEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEA 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 485 LQ-----TKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEI 559
Cdd:COG4717 239 AAleerlKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEE 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 560 HDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQadttntdtalttleeaLADKERTIERLKEQRDRD 639
Cdd:COG4717 319 EELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQ----------------LEELEQEIAALLAEAGVE 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 640 EREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASslASSGLKKDSRLKTLEIALEQKKEECLKMESQLKK 719
Cdd:COG4717 383 DEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALD--EEELEEELEELEEELEELEEELEELREELAELEA 460
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1720416779 720 AHEATLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEK 772
Cdd:COG4717 461 ELEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREER 513
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
398-933 |
4.36e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.44 E-value: 4.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 398 LRDLEEEIQML--KSNGALSSEEREEEMKQMEVYR---SHSKFMKNKVEQLKEELSSKD---AQGEELKKRAAGLQSEIG 469
Cdd:pfam12128 292 LRTLDDQWKEKrdELNGELSAADAAVAKDRSELEAledQHGAFLDADIETAAADQEQLPswqSELENLEERLKALTGKHQ 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 470 QVKQELSRKDtellalQTKLETLTNQFSDSKQHIEVLKEslTAKEQRAAI---LQTEVDALRLRLEEKETMLNKKTKQIQ 546
Cdd:pfam12128 372 DVTAKYNRRR------SKIKEQNNRDIAGIKDKLAKIRE--ARDRQLAVAeddLQALESELREQLEAGKLEFNEEEYRLK 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 547 D-MAEEKGTQAGEIHDLKDMLDvkerkvnvlqkkIENLQEQL-RDKEKQMSSLKErVKSLQADTTNTDTALTTLEEALAD 624
Cdd:pfam12128 444 SrLGELKLRLNQATATPELLLQ------------LENFDERIeRAREEQEAANAE-VERLQSELRQARKRRDQASEALRQ 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 625 KERtieRLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEAS-LLDIKEHASSLASSGLKKDSRLKTLEIAL 703
Cdd:pfam12128 511 ASR---RLEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQSIGKVISPeLLHRTDLDPEVWDGSVGGELNLYGVKLDL 587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 704 EQ-KKEECLKMESQLKKAHEATLEARASPemSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVE--------NEKND 774
Cdd:pfam12128 588 KRiDVPEWAASEEELRERLDKAEEALQSA--REKQAAAEEQLVQANGELEKASREETFARTALKNARldlrrlfdEKQSE 665
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 775 KDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRredslsdssqqlQVEELLMAMEKVKQELES-MKAKLSS 853
Cdd:pfam12128 666 KDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKE------------QKREARTEKQAYWQVVEGaLDAQLAL 733
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 854 TQQSLAEKET----HLTNLRAERRKHL-----EEVLEMKQEALLAAISEKDANIALLE-------------LSSSKKKTQ 911
Cdd:pfam12128 734 LKAAIAARRSgakaELKALETWYKRDLaslgvDPDVIAKLKREIRTLERKIERIAVRRqevlryfdwyqetWLQRRPRLA 813
|
570 580
....*....|....*....|..
gi 1720416779 912 EEVAALKREKDRLVQQLKQQTQ 933
Cdd:pfam12128 814 TQLSNIERAISELQQQLARLIA 835
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
543-680 |
4.48e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.99 E-value: 4.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 543 KQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTleEAL 622
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEY--EAL 94
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1720416779 623 ADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKE 680
Cdd:COG1579 95 QKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELA 152
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
535-756 |
5.34e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 5.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 535 ETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQ------ADT 608
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERReelgerARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 609 TNTDTALTTLEEALADKE------RTIERLKEQRDRDerekQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHA 682
Cdd:COG3883 95 LYRSGGSVSYLDVLLGSEsfsdflDRLSALSKIADAD----ADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAK 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720416779 683 SSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDESSKAQT 756
Cdd:COG3883 171 AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 244
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
627-941 |
5.58e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.36 E-value: 5.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 627 RTIERLKEQRDRDEREKQEEIDTYKKDL-------------KDLREKVSLLQGDLSEKEASLLDikeHASSLASSGLKKD 693
Cdd:PTZ00121 1027 EKIEELTEYGNNDDVLKEKDIIDEDIDGnhegkaeakahvgQDEGLKPSYKDFDFDAKEDNRAD---EATEEAFGKAEEA 1103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 694 SRLKTLEIALEQKKEECLKMESQLKKAHEA--------TLEARAS-----PEMSDRIQQLER-EISRYKDESSKAQtEVD 759
Cdd:PTZ00121 1104 KKTETGKAEEARKAEEAKKKAEDARKAEEArkaedarkAEEARKAedakrVEIARKAEDARKaEEARKAEDAKKAE-AAR 1182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 760 RLLEILKEVENEKNDKDKKI-----AELERQVKD-----QNKKVANLKHKEQVEKKKsaqmlEEARRREDsLSDSSQQLQ 829
Cdd:PTZ00121 1183 KAEEVRKAEELRKAEDARKAeaarkAEEERKAEEarkaeDAKKAEAVKKAEEAKKDA-----EEAKKAEE-ERNNEEIRK 1256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 830 VEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLR-AERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKK 908
Cdd:PTZ00121 1257 FEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKkAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKK 1336
|
330 340 350
....*....|....*....|....*....|...
gi 1720416779 909 KTQEEVAALKREKDRLVQQLKQQTQNRMKLMAD 941
Cdd:PTZ00121 1337 KAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAA 1369
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
735-937 |
5.71e-04 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 43.91 E-value: 5.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 735 DRIQQLEREISRYKDESSKAQTEVDRLLEILKEVEnEKNDKDKKIAELERQVKDqnkkvanLKHKEQVeKKKSAQ----- 809
Cdd:COG0497 165 RAWRALKKELEELRADEAERARELDLLRFQLEELE-AAALQPGEEEELEEERRR-------LSNAEKL-REALQEaleal 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 810 ---------MLEEARRREDSLSDSSQQLQ-----VEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKH 875
Cdd:COG0497 236 sggeggaldLLGQALRALERLAEYDPSLAelaerLESALIELEEAASELRRYLDSLEFDPERLEEVEERLALLRRLARKY 315
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720416779 876 ---LEEVLEMKQEAL--LAAISEKDANIALLElssskkktqEEVAALKREKDRLVQQLkqqTQNRMK 937
Cdd:COG0497 316 gvtVEELLAYAEELRaeLAELENSDERLEELE---------AELAEAEAELLEAAEKL---SAARKK 370
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
645-857 |
6.44e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.75 E-value: 6.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 645 EEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSrLKTLEIALEQKkeeclkmESQLKKAHEAT 724
Cdd:PRK11281 73 DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLS-LRQLESRLAQT-------LDQLQNAQNDL 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 725 LEA------------RASPEMSD---RIQQLEREISRYKDESSK-----------------AQTEVDRLL----EILKEV 768
Cdd:PRK11281 145 AEYnsqlvslqtqpeRAQAALYAnsqRLQQIRNLLKGGKVGGKAlrpsqrvllqaeqallnAQNDLQRKSlegnTQLQDL 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 769 ENEKND-KDKKIAELERQVKD-QNkkVANLKHKEQVEKK-KSAQMLEEA-RRREDSL----SDSSQQLQvEELLMAMEK- 839
Cdd:PRK11281 225 LQKQRDyLTARIQRLEHQLQLlQE--AINSKRLTLSEKTvQEAQSQDEAaRIQANPLvaqeLEINLQLS-QRLLKATEKl 301
|
250 260
....*....|....*....|.
gi 1720416779 840 ---VKQELEsMKAKLSSTQQS 857
Cdd:PRK11281 302 ntlTQQNLR-VKNWLDRLTQS 321
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
735-937 |
6.47e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.96 E-value: 6.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 735 DRIQQLE--REISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLE 812
Cdd:pfam17380 351 ERIRQEErkRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQE 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 813 EARRREdslsdssQQLQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLE------EVLEMKQEA 886
Cdd:pfam17380 431 EARQRE-------VRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRaeeqrrKILEKELEE 503
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1720416779 887 LLAAISEKDANIALLElssskKKTQEEVAALKREKDRLVQQLKQQTQNRMK 937
Cdd:pfam17380 504 RKQAMIEEERKRKLLE-----KEMEERQKAIYEEERRREAEEERRKQQEME 549
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
209-421 |
8.21e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.46 E-value: 8.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 209 TIWKEQYRVVQEENQHMQMTIQALQDELRIQRDlnqlFQQDSSSRTGEPcVAELTE------ENFQRLHAEHERQAKELF 282
Cdd:PHA02562 170 KLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNK----NIEEQRKKNGEN-IARKQNkydelvEEAKTIKAEIEELTDELL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 283 LLRKTLEEME---LRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNM 359
Cdd:PHA02562 245 NLVMDIEDPSaalNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDE 324
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720416779 360 LREEMHRRFENapdSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREE 421
Cdd:PHA02562 325 LEEIMDEFNEQ---SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAK 383
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
272-709 |
8.46e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 8.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 272 AEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGL---SAKATEEDHERTRRLAEAEMHVHHLES 348
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLyqeLEALEAELAELPERLEELEERLEELRE 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 349 LLEQKEKENNMLREEMHRRFEnapdsaktkALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEV 428
Cdd:COG4717 161 LEEELEELEAELAELQEELEE---------LLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQ 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 429 YRShSKFMKNKVEQLKEELSSKDAQGeelkkRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKE 508
Cdd:COG4717 232 LEN-ELEAAALEERLKEARLLLLIAA-----ALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAE 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 509 SLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKdmldvKERKVNVLQKKIENLQEQLR 588
Cdd:COG4717 306 ELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELE-----EELQLEELEQEIAALLAEAG 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 589 -DKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDE-REKQEEIDTYKKDLKDLREKVSLLQG 666
Cdd:COG4717 381 vEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEElEELEEELEELEEELEELREELAELEA 460
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 1720416779 667 DLSEKEAS-----LLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEE 709
Cdd:COG4717 461 ELEQLEEDgelaeLLQELEELKAELRELAEEWAALKLALELLEEAREE 508
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
369-735 |
9.35e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.36 E-value: 9.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 369 ENAPDSAKTKALQTVIE-MKDSKISSMERGL--RDLEEEIQMLKSngALSSEEREEEMKQmEVYRSHSKFMKNK--VEQL 443
Cdd:PRK11281 30 ASNGDLPTEADVQAQLDaLNKQKLLEAEDKLvqQDLEQTLALLDK--IDRQKEETEQLKQ-QLAQAPAKLRQAQaeLEAL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 444 KEELSSKDAQG------EELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIE----VLKESLTAK 513
Cdd:PRK11281 107 KDDNDEETRETlstlslRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQqirnLLKGGKVGG 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 514 EQ----RAAILQTEVDALRLRLEEKETMLNKKTkQIQDMAEEKgtqageihdlkdmLDVKERKVNVLQKKIENLQEQLRD 589
Cdd:PRK11281 187 KAlrpsQRVLLQAEQALLNAQNDLQRKSLEGNT-QLQDLLQKQ-------------RDYLTARIQRLEHQLQLLQEAINS 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 590 KEKQMSslKERVKSLQAdttnTDTALTTLEEALADKERTI-----ERLKEQRDRDEREKQEEIDTyKKDL-------KDL 657
Cdd:PRK11281 253 KRLTLS--EKTVQEAQS----QDEAARIQANPLVAQELEInlqlsQRLLKATEKLNTLTQQNLRV-KNWLdrltqseRNI 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 658 REKVSLLQGDL-------SEKEA--SLLDIKEHASSLAssglkkDSRLKTLEIalEQKKEECLKMEsqlkkAHEATLEAR 728
Cdd:PRK11281 326 KEQISVLKGSLllsrilyQQQQAlpSADLIEGLADRIA------DLRLEQFEI--NQQRDALFQPD-----AYIDKLEAG 392
|
....*..
gi 1720416779 729 ASPEMSD 735
Cdd:PRK11281 393 HKSEVTD 399
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
559-878 |
1.62e-03 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 42.31 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 559 IHDLKDMLDVKERKVNV-LQKKIENLQ-EQLRD----KEKQMSSLKERVKS-LQADTTNTDTALTTLEEALADKERTIE- 630
Cdd:NF033838 71 LSEIQKSLDKRKHTQNVaLNKKLSDIKtEYLYElnvlKEKSEAELTSKTKKeLDAAFEQFKKDTLEPGKKVAEATKKVEe 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 631 ---RLKEQRDRDERekQEEIDTYKKDLKDLREkvsllqGDLSEKEASLLDIKEHASslassGLKKDSRLKTLEIALEQKK 707
Cdd:NF033838 151 aekKAKDQKEEDRR--NYPTNTYKTLELEIAE------SDVEVKKAELELVKEEAK-----EPRDEEKIKQAKAKVESKK 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 708 EECLKMESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDES-SKAQTEVDRLLEILKEVENEKNDKDKKIAE--LER 784
Cdd:NF033838 218 AEATRLEKIKTDREKAEEEAKRRADAKLKEAVEKNVATSEQDKPkRRAKRGVLGEPATPDKKENDAKSSDSSVGEetLPS 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 785 QVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQVEELLMAMEKVKQELESMKAKLSSTQ----QSLAE 860
Cdd:NF033838 298 PSLKPEKKVAEAEKKVEEAKKKAKDQKEEDRRNYPTNTYKTLELEIAESDVKVKEAELELVKEEAKEPRNEekikQAKAK 377
|
330 340
....*....|....*....|....
gi 1720416779 861 KE------THLTNLRAERRKHLEE 878
Cdd:NF033838 378 VEskkaeaTRLEKIKTDRKKAEEE 401
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
375-606 |
1.74e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 375 AKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKS-NGALS-SEEREEEMKQMEVYRShskfmknKVEQLKEELSSKDA 452
Cdd:COG3206 168 LRREEARKALEFLEEQLPELRKELEEAEAALEEFRQkNGLVDlSEEAKLLLQQLSELES-------QLAEARAELAEAEA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 453 QGEELKKRAAGLQSEIGQVKQ--ELSRKDTELLALQTKLETLTNQFSDS-------KQHIEVLKESLTAKEQRAAI-LQT 522
Cdd:COG3206 241 RLAALRAQLGSGPDALPELLQspVIQQLRAQLAELEAELAELSARYTPNhpdvialRAQIAALRAQLQQEAQRILAsLEA 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 523 EVDALRLRLEEKETMLNKKTKQIQDMAEekgtqageihdlkdmldvkerkvnvLQKKIENLQEQLRDKEKQMSSLKERVK 602
Cdd:COG3206 321 ELEALQAREASLQAQLAQLEARLAELPE-------------------------LEAELRRLEREVEVARELYESLLQRLE 375
|
....
gi 1720416779 603 SLQA 606
Cdd:COG3206 376 EARL 379
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
439-653 |
1.83e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 1.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 439 KVEQLKEELsskdaqgEELKKRAAGLQSEIGQVKQELSRKDTELLALQtkleTLTNQFSDSKQHIEVLKESLTAKEQRAA 518
Cdd:COG4913 611 KLAALEAEL-------AELEEELAEAEERLEALEAELDALQERREALQ----RLAEYSWDEIDVASAEREIAELEAELER 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 519 ILQT--EVDALRLRLEEKETMLNKKTKQIQDMAEEKGTqageihdlkdmldvkerkvnvLQKKIENLQEQLRDKEKQMSS 596
Cdd:COG4913 680 LDASsdDLAALEEQLEELEAELEELEEELDELKGEIGR---------------------LEKELEQAEEELDELQDRLEA 738
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720416779 597 LKERVKSLQADTTNTDTALTTLEEALADK----ERTIERLKEQRDRDEREKQEEIDTYKKD 653
Cdd:COG4913 739 AEDLARLELRALLEERFAAALGDAVERELrenlEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
418-745 |
2.65e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 41.76 E-value: 2.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 418 EREEEMKQMEVYRSHSKFMKNKVEQLKEELSskDAQGEELKKRAAGLQSEIGQVKQELSRKDTEL---LALQTKLETLTN 494
Cdd:PLN03229 416 ERKVNMKKREAVKTPVRELEGEVEKLKEQIL--KAKESSSKPSELALNEMIEKLKKEIDLEYTEAviaMGLQERLENLRE 493
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 495 QFSDSKQHIEVLKESLTAKEQRAAilqtevDALRLRLEEKETMLNKKTKqiQDMAEekgtqagEIHDLKDMLDVKERKVN 574
Cdd:PLN03229 494 EFSKANSQDQLMHPVLMEKIEKLK------DEFNKRLSRAPNYLSLKYK--LDMLN-------EFSRAKALSEKKSKAEK 558
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 575 V---LQKKIENLQEQLRDKEKqMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRD---EREKQEEID 648
Cdd:PLN03229 559 LkaeINKKFKEVMDRPEIKEK-MEALKAEVASSGASSGDELDDDLKEKVEKMKKEIELELAGVLKSMGlevIGVTKKNKD 637
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 649 TYKKDL-KDLREKVSLLQGDLSEKEASLLDikehasslaSSGLKKDSRLKTLEIALEQK------KEECLKMESQLKkah 721
Cdd:PLN03229 638 TAEQTPpPNLQEKIESLNEEINKKIERVIR---------SSDLKSKIELLKLEVAKASKtpdvteKEKIEALEQQIK--- 705
|
330 340
....*....|....*....|....
gi 1720416779 722 EATLEARASPEMSDRIQQLEREIS 745
Cdd:PLN03229 706 QKIAEALNSSELKEKFEELEAELA 729
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
564-809 |
3.03e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.35 E-value: 3.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 564 DMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREK 643
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 644 QEEIDTYK--------KDLKDLREKVSLLQgDLSEKEASLLDikehasslassglkkdsRLKTLEIALEQKKEECLKMES 715
Cdd:COG3883 96 YRSGGSVSyldvllgsESFSDFLDRLSALS-KIADADADLLE-----------------ELKADKAELEAKKAELEAKLA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 716 QLKKAHEatlearaspEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVAN 795
Cdd:COG3883 158 ELEALKA---------ELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAA 228
|
250
....*....|....
gi 1720416779 796 LKHKEQVEKKKSAQ 809
Cdd:COG3883 229 AAAAAAAAAAAAAA 242
|
|
| Gp58 |
pfam07902 |
gp58-like protein; Sequences found in this family are derived from a number of bacteriophage ... |
384-606 |
3.31e-03 |
|
gp58-like protein; Sequences found in this family are derived from a number of bacteriophage and prophage proteins. They are similar to gp58, a minor structural protein of Lactococcus delbrueckii bacteriophage LL-H.
Pssm-ID: 369586 [Multi-domain] Cd Length: 594 Bit Score: 41.48 E-value: 3.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 384 IEMKDSKIS-----------SMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDA 452
Cdd:pfam07902 92 LELTDTKNSnlwskiklnnnGMLREYHNDTIKTEIVESAEGIATRISEDTDKKLALINETISGIRREYQDADRQLSSSYQ 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 453 QGEE-----LKKRAAGLQSEIGQVKQELSRK-DTELLALQTKLETLTNQFSDS-KQHIEVLKESLTAKEQraailqtevd 525
Cdd:pfam07902 172 AGIEglkatMASDKIGLQAEIQASAQGLSQRyDNEIRKLSAKITTTSSGTTEAyESKLDDLRAEFTRSNQ---------- 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 526 ALRLRLEEKETMLnkktkqiqdmaeeKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQ 605
Cdd:pfam07902 242 GMRTELESKISGL-------------QSTQQSTAYQISQEISNREGAVSRVQQDLDSYQRRLQDAEKNYSSLTQTVKGLQ 308
|
.
gi 1720416779 606 A 606
Cdd:pfam07902 309 S 309
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
756-928 |
3.48e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 3.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 756 TEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHkeqvEKKKSAQMLEEARRREDSLSDSSQQLQVEELLM 835
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEK----EIKRLELEIEEVEARIKKYEEQLGNVRNNKEYE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 836 AMEKvkqELESMKAKLSSTQQSLAEKETHLTNLRAErRKHLEEVLEMKQEALLAAISEKDANIAllelssskkKTQEEVA 915
Cdd:COG1579 93 ALQK---EIESLKRRISDLEDEILELMERIEELEEE-LAELEAELAELEAELEEKKAELDEELA---------ELEAELE 159
|
170
....*....|...
gi 1720416779 916 ALKREKDRLVQQL 928
Cdd:COG1579 160 ELEAEREELAAKI 172
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
690-873 |
3.73e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 3.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 690 LKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARAspEMSDRIQQLEREISRYKDESSKAQTEVD--RLLEILKE 767
Cdd:COG4717 59 FKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELE--ELEEELEELEAELEELREELEKLEKLLQllPLYQELEA 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 768 VENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQL--QVEELLMAMEKVKQELE 845
Cdd:COG4717 137 LEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLaeELEELQQRLAELEEELE 216
|
170 180
....*....|....*....|....*...
gi 1720416779 846 SMKAKLSSTQQSLAEKETHLTNLRAERR 873
Cdd:COG4717 217 EAQEELEELEEELEQLENELEAAALEER 244
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
328-566 |
4.09e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 4.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 328 EDHERTRRLAE-AEMHVHHLESLLEQKEKENNMLREEMHRRFENAPdsAKTKALQTVIEMKDSKISSMERGLRDLEEEIQ 406
Cdd:COG4913 235 DDLERAHEALEdAREQIELLEPIRELAERYAAARERLAELEYLRAA--LRLWFAQRRLELLEAELEELRAELARLEAELE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 407 MLksngalssEEREEEMKQmevyrshskfmknKVEQLKEELSSKDAQgeelkkRAAGLQSEIGQVKQELSRKDTELLALQ 486
Cdd:COG4913 313 RL--------EARLDALRE-------------ELDELEAQIRGNGGD------RLEQLEREIERLERELEERERRRARLE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 487 TKLETLTNQFSDSKQ----HIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDL 562
Cdd:COG4913 366 ALLAALGLPLPASAEefaaLRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLAL 445
|
....
gi 1720416779 563 KDML 566
Cdd:COG4913 446 RDAL 449
|
|
| GAS |
pfam13851 |
Growth-arrest specific micro-tubule binding; This family is the highly conserved central ... |
442-632 |
4.47e-03 |
|
Growth-arrest specific micro-tubule binding; This family is the highly conserved central region of a number of metazoan proteins referred to as growth-arrest proteins. In mouse, Gas8 is predominantly a testicular protein, whose expression is developmentally regulated during puberty and spermatogenesis. In humans, it is absent in infertile males who lack the ability to generate gametes. The localization of Gas8 in the motility apparatus of post-meiotic gametocytes and mature spermatozoa, together with the detection of Gas8 also in cilia at the apical surfaces of epithelial cells lining the pulmonary bronchi and Fallopian tubes suggests that the Gas8 protein may have a role in the functioning of motile cellular appendages. Gas8 is a microtubule-binding protein localized to regions of dynein regulation in mammalian cells.
Pssm-ID: 464001 [Multi-domain] Cd Length: 200 Bit Score: 39.50 E-value: 4.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 442 QLKEELsskdaqgEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHievlKESLTAKEQRAAILQ 521
Cdd:pfam13851 30 SLKEEI-------AELKKKEERNEKLMSEIQQENKRLTEPLQKAQEEVEELRKQLENYEKD----KQSLKNLKARLKVLE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 522 TEVDALRLRLEEKEtMLNKKTKQIQDMAEEKGTQAgeIHDLKDMLDVKErkvNVLQKKIENLQEQLRDKEKQMSSLKERV 601
Cdd:pfam13851 99 KELKDLKWEHEVLE-QRFEKVERERDELYDKFEAA--IQDVQQKTGLKN---LLLEKKLQALGETLEKKEAQLNEVLAAA 172
|
170 180 190
....*....|....*....|....*....|.
gi 1720416779 602 KslqADTTNTDTALTTLEEALADKERTIERL 632
Cdd:pfam13851 173 N---LDPDALQAVTEKLEDVLESKNQLIKDL 200
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
306-520 |
5.19e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.68 E-value: 5.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 306 DESIKKLLEMLQSKGLS---AKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNMLREEM----HRRFENAPDSAKTK 378
Cdd:PRK05771 15 KSYKDEVLEALHELGVVhieDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKkkvsVKSLEELIKDVEEE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 379 ALQTVIEMKD--SKISSMERGLRDLEEEIQMLKSNGALSSE---EREEEMKQMEVYRSHskfmKNKVEQLKEELSS---- 449
Cdd:PRK05771 95 LEKIEKEIKEleEEISELENEIKELEQEIERLEPWGNFDLDlslLLGFKYVSVFVGTVP----EDKLEELKLESDVenve 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 450 -------------------KDAQGEELKKraAGLQ----SEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQH---- 502
Cdd:PRK05771 171 yistdkgyvyvvvvvlkelSDEVEEELKK--LGFErlelEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKylee 248
|
250
....*....|....*...
gi 1720416779 503 IEVLKESLTAKEQRAAIL 520
Cdd:PRK05771 249 LLALYEYLEIELERAEAL 266
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
532-641 |
5.46e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.53 E-value: 5.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 532 EEKETMLNKKTKQIQDMAEEKGTQAG-EIHDLKDMLdvkERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTN 610
Cdd:PRK12704 38 EEAKRILEEAKKEAEAIKKEALLEAKeEIHKLRNEF---EKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEK 114
|
90 100 110
....*....|....*....|....*....|..
gi 1720416779 611 TDTALTTLEEALADKERTIERL-KEQRDRDER 641
Cdd:PRK12704 115 KEKELEQKQQELEKKEEELEELiEEQLQELER 146
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
694-851 |
7.24e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.15 E-value: 7.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 694 SRLKTLEIALEQKKEECLKMESQLKKahEATLEARAspEMSDRIQQLEREISRYKDESSKAQTevdRLLEILKEVENEKN 773
Cdd:PRK12704 31 AKIKEAEEEAKRILEEAKKEAEAIKK--EALLEAKE--EIHKLRNEFEKELRERRNELQKLEK---RLLQKEENLDRKLE 103
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720416779 774 DKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEarrredsLSDSSqQLQVEELL-MAMEKVKQELESMKAKL 851
Cdd:PRK12704 104 LLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE-------LERIS-GLTAEEAKeILLEKVEEEARHEAAVL 174
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
502-770 |
7.36e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.30 E-value: 7.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 502 HIEVLKESLTAKEQRAAI-LQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAgeIHDLKDMLDVKERKVNVLQKKI 580
Cdd:PRK05771 32 HIEDLKEELSNERLRKLRsLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEEL--IKDVEEELEKIEKEIKELEEEI 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 581 ENLQEQLRDKEKQMSSLkERVKSLqadttntdtalTTLEEALADKERTIERLKE-QRDRDEREKQEEIDTYKKDLKDLRE 659
Cdd:PRK05771 110 SELENEIKELEQEIERL-EPWGNF-----------DLDLSLLLGFKYVSVFVGTvPEDKLEELKLESDVENVEYISTDKG 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 660 KVSLLQGDLSEKEASLLDIkehassLASSGLKKD--SRLKTLEIALEQKKEEclkmESQLKKaheatlearaspemsdRI 737
Cdd:PRK05771 178 YVYVVVVVLKELSDEVEEE------LKKLGFERLelEEEGTPSELIREIKEE----LEEIEK----------------ER 231
|
250 260 270
....*....|....*....|....*....|...
gi 1720416779 738 QQLEREISRYKDESSKAQTEVDRLLEILKEVEN 770
Cdd:PRK05771 232 ESLLEELKELAKKYLEELLALYEYLEIELERAE 264
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
753-944 |
7.71e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.39 E-value: 7.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 753 KAQTEVDRLLEILKE--VENEKNDKDKKIAELERQVKDQNKKVanlkhkEQVEKKksaqmLEEARRREDSLSDSSQQLQV 830
Cdd:COG3206 149 LAAAVANALAEAYLEqnLELRREEARKALEFLEEQLPELRKEL------EEAEAA-----LEEFRQKNGLVDLSEEAKLL 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 831 EellmamekvkQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEK--DANIALLELSSSKK 908
Cdd:COG3206 218 L----------QQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQlaELEAELAELSARYT 287
|
170 180 190
....*....|....*....|....*....|....*.
gi 1720416779 909 KTQEEVAALKREKDRLVQQLKQQTQNRMKLMADNYE 944
Cdd:COG3206 288 PNHPDVIALRAQIAALRAQLQQEAQRILASLEAELE 323
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
194-666 |
7.78e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 40.11 E-value: 7.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 194 LKKERALRKDEASKITIWKEQYRVVQEENQHMQMTIQALQDELRIQRDLNQLFQQDSSSRTGEPCVAELTEENFQRLHAE 273
Cdd:pfam05557 54 QKRIRLLEKREAEAEEALREQAELNRLKKKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSE 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 274 HERQAKELFLLRKTLEEMELRI---ETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLL 350
Cdd:pfam05557 134 LEELQERLDLLKAKASEAEQLRqnlEKQQSSLAEAEQRIKELEFEIQSQEQDSEIVKNSKSELARIPELEKELERLREHN 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 351 EQ--KEKENN-MLREEMH------RRFENAPD------------SAKTKALQTVIEMKDSKISSMERGLRDLE----EEI 405
Cdd:pfam05557 214 KHlnENIENKlLLKEEVEdlkrklEREEKYREeaatlelekeklEQELQSWVKLAQDTGLNLRSPEDLSRRIEqlqqREI 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 406 QMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNkVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLAL 485
Cdd:pfam05557 294 VLKEENSSLTSSARQLEKARRELEQELAQYLKK-IEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILESYDKELTMS 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 486 QTK-------------LETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKE--------TMLNKKTK- 543
Cdd:pfam05557 373 NYSpqllerieeaedmTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADpsyskeevDSLRRKLEt 452
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 544 ---QIQDMAEEKGTQAGEI--HDLKDMLDVKERKV-----NVLQKKIENLQEQLRDKEKQMSSLKERVKSLQAdttNTDT 613
Cdd:pfam05557 453 lelERQRLREQKNELEMELerRCLQGDYDPKKTKVlhlsmNPAAEAYQQRKNQLEKLQAEIERLKRLLKKLED---DLEQ 529
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 1720416779 614 ALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQG 666
Cdd:pfam05557 530 VLRLPETTSTMNFKEVLDLRKELESAELKNQRLKEVFQAKIQEFRDVCYMLTG 582
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
388-534 |
7.83e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.14 E-value: 7.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 388 DSKISSMERGLRDLEEEIQMLKsngalssEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKR------- 460
Cdd:COG1579 16 DSELDRLEHRLKELPAELAELE-------DELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQlgnvrnn 88
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720416779 461 --AAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEK 534
Cdd:COG1579 89 keYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAE 164
|
|
| PRK08475 |
PRK08475 |
F0F1 ATP synthase subunit B; Validated |
874-945 |
8.58e-03 |
|
F0F1 ATP synthase subunit B; Validated
Pssm-ID: 236272 [Multi-domain] Cd Length: 167 Bit Score: 38.46 E-value: 8.58e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720416779 874 KHLEEVlemkQEALLAAISEKDAniALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMADNYED 945
Cdd:PRK08475 60 KRLEEI----QEKLKESKEKKED--ALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEE 125
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
384-526 |
9.15e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.06 E-value: 9.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 384 IEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQmevyrshskfmknKVEQLKEELSSKDAQGEELKKRAAG 463
Cdd:COG0542 406 IDSKPEELDELERRLEQLEIEKEALKKEQDEASFERLAELRD-------------ELAELEEELEALKARWEAEKELIEE 472
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720416779 464 LQSeigqVKQELSRKDTELLALQTKLETLTNQFsdskqhievlkesltakEQRAAILQTEVDA 526
Cdd:COG0542 473 IQE----LKEELEQRYGKIPELEKELAELEEEL-----------------AELAPLLREEVTE 514
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
722-937 |
9.38e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.00 E-value: 9.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 722 EATLEARASpEMSDRIQQLEREISRYKDESSKAQTEVDRLLEilkevENEKNDKDKKIAELERQVKDQNKKVANLKHKEQ 801
Cdd:COG3206 163 EQNLELRRE-EARKALEFLEEQLPELRKELEEAEAALEEFRQ-----KNGLVDLSEEAKLLLQQLSELESQLAEARAELA 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 802 VEKKKSAQMLEEARRREDSLSDSSQQLQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVL- 880
Cdd:COG3206 237 EAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILa 316
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 881 --EMKQEALLAAISEKDANIALLELSSSK-KKTQEEVAALKREKDRLVQQLkQQTQNRMK 937
Cdd:COG3206 317 slEAELEALQAREASLQAQLAQLEARLAElPELEAELRRLEREVEVARELY-ESLLQRLE 375
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
392-766 |
9.89e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 39.88 E-value: 9.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 392 SSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQV 471
Cdd:pfam07888 34 NRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEEL 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 472 KQE---LSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKetmlnkktkqIQDM 548
Cdd:pfam07888 114 SEEkdaLLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAK----------LQQT 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 549 AEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQL---RDKEKQMSSLKERVKSLQadttntdtalttleEALADK 625
Cdd:pfam07888 184 EEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLttaHRKEAENEALLEELRSLQ--------------ERLNAS 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 626 ERTIERLKEqrdrDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEkeaSLLDIKEHASSLASSglkkdsrLKTLEIALEQ 705
Cdd:pfam07888 250 ERKVEGLGE----ELSSMAAQRDRTQAELHQARLQAAQLTLQLAD---ASLALREGRARWAQE-------RETLQQSAEA 315
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720416779 706 KKEECLKMESQLKKAHEATLEARASPemsdriQQLEREISRYKDESSKAQTEVDRLLEILK 766
Cdd:pfam07888 316 DKDRIEKLSAELQRLEERLQEERMER------EKLEVELGREKDCNRVQLSESRRELQELK 370
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
556-980 |
9.99e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 40.06 E-value: 9.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 556 AGEIHDLKDMLDVKerkvnvLQKKIENLQEQLRDK--EKQMSSLKERVKSLQADTTNTDTALTTLEEA---LADKERTIE 630
Cdd:COG5022 730 AGVLAALEDMRDAK------LDNIATRIQRAIRGRylRRRYLQALKRIKKIQVIQHGFRLRRLVDYELkwrLFIKLQPLL 803
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 631 RLKEQRDRdEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLdikeHASSLASSGLKKDSRLKTLEIALEQKKeec 710
Cdd:COG5022 804 SLLGSRKE-YRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLI----QKFGRSLKAKKRFSLLKKETIYLQSAQ--- 875
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 711 lkmesqlkkaheatlearaspemsdRIQQLEREISRYKDESSKaqtevdrlLEILKEVENEKndkDKKIAELERQVkdQN 790
Cdd:COG5022 876 -------------------------RVELAERQLQELKIDVKS--------ISSLKLVNLEL---ESEIIELKKSL--SS 917
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 791 KKVANLKHKEQvekkkSAQMLEEARRREDSLSDSSQQLQVeellmamEKVKQELESMKAKLSSTQQSLAEKETHLTNLRA 870
Cdd:COG5022 918 DLIENLEFKTE-----LIARLKKLLNNIDLEEGPSIEYVK-------LPELNKLHEVESKLKETSEEYEDLLKKSTILVR 985
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720416779 871 ERRKHLEEVLEMKQEallaaisekdaniaLLELSSSKKKTQEEVAALKrEKDRLVQQLKQQTQnrmklmadnyeddHFRS 950
Cdd:COG5022 986 EGNKANSELKNFKKE--------------LAELSKQYGALQESTKQLK-ELPVEVAELQSASK-------------IISS 1037
|
410 420 430
....*....|....*....|....*....|
gi 1720416779 951 SRSNQTNHKPSPDQIIQPLLELDQNRSKLK 980
Cdd:COG5022 1038 ESTELSILKPLQKLKGLLLLENNQLQARYK 1067
|
|
| |
