|
Name |
Accession |
Description |
Interval |
E-value |
| ParA |
pfam10609 |
NUBPL iron-transfer P-loop NTPase; This family contains ATPases involved in plasmid ... |
65-315 |
1.58e-151 |
|
NUBPL iron-transfer P-loop NTPase; This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.
Pssm-ID: 431392 [Multi-domain] Cd Length: 246 Bit Score: 425.33 E-value: 1.58e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 65 VKHKILVLSGKGGVGKSTFSAHLAHALASDvSKEVAVLDVDICGPSIPRIMGLDGEQVHQSGSGWSPVYVEeNLAVMSIG 144
Cdd:pfam10609 2 VKHVIAVASGKGGVGKSTVAVNLALALARL-GYKVGLLDADIYGPSIPRMLGLEGERPEQSDGGIIPVEAH-GIKVMSIG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 145 FLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGDLDYLIVDTPPGTSDEHLSIVQYLstaGIDGAVIITTPQEVSLQDVRKE 224
Cdd:pfam10609 80 FLLPDEDDAVIWRGPMKSGAIKQFLTDVDWGELDYLIIDLPPGTGDEQLTLAQLL---PLTGAVIVTTPQDVALLDVRKA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 225 IRFCQKVKLPIIGVVENMSGFVCPKCKNTSQIFppTTGGAERMCEELGLRLLGKVPLDPRIGRSCDEGRSFLAEVPDSPA 304
Cdd:pfam10609 157 IDMFKKVNVPVLGVVENMSYFVCPHCGEETYIF--GKGGGEKLAEELGVPFLGEIPLDPDIREAGDEGKPFVLADPDSPA 234
|
250
....*....|.
gi 1721879820 305 ALAYSRIVKSI 315
Cdd:pfam10609 235 AKAFLKIADKV 245
|
|
| MrpORP |
NF041136 |
iron-sulfur cluster carrier protein MrpORP; |
65-317 |
7.80e-131 |
|
iron-sulfur cluster carrier protein MrpORP;
Pssm-ID: 469059 [Multi-domain] Cd Length: 365 Bit Score: 377.24 E-value: 7.80e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 65 VKHKILVLSGKGGVGKSTFSAHLAHALASDvSKEVAVLDVDICGPSIPRIMGLDGEQVHQSGSGWSPVYVEENLAVMSIG 144
Cdd:NF041136 4 IKHKILVMSGKGGVGKSTVAANLAVALARR-GYKVGLLDVDIHGPSIPKLLGLEGKRLGSEDEGILPVEYSDNLKVMSIG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 145 FLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGDLDYLIVDTPPGTSDEHLSIVQYLstaGIDGAVIITTPQEVSLQDVRKE 224
Cdd:NF041136 83 FLLENRDDAVIWRGPVKMGVIKQFLSDVEWGDLDYLIIDSPPGTGDEPLSVAQLI---PDAGAVIVTTPQELALADVRKS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 225 IRFCQKVKLPIIGVVENMSGFVCPKCKNTSQIFPptTGGAERMCEELGLRLLGKVPLDPRIGRSCDEGRSFLAEVPDSPA 304
Cdd:NF041136 160 INFCRKLNIPILGIVENMSGFVCPHCGKEIDIFK--SGGGEKLAEEMGVPFLGRIPIDPEIVEAGDAGRPFVLDYAWSPA 237
|
250
....*....|...
gi 1721879820 305 ALAYSRIVKSIQE 317
Cdd:NF041136 238 AKALEKIVDPILE 250
|
|
| Mrp_NBP35 |
cd02037 |
Mrp/NBP35 ATP-binding protein family; Mrp/NBP35 ATP-binding family protein are typically ... |
67-286 |
1.36e-130 |
|
Mrp/NBP35 ATP-binding protein family; Mrp/NBP35 ATP-binding family protein are typically iron-sulfur (FeS) cluster scaffolds that function to assemble nascent FeS clusters for transfer to FeS-requiring enzymes. Members include the eukaryotic nucleotide-binding protein 1 (NUBP1) which is a component of the cytosolic iron-sulfur (Fe/S) protein assembly (CIA) machinery and the archael [NiFe] hydrogenase maturation protein HypB which is required for nickel insertion into [NiFe] hydrogenase.
Pssm-ID: 349757 [Multi-domain] Cd Length: 213 Bit Score: 371.06 E-value: 1.36e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 67 HKILVLSGKGGVGKSTFSAHLAHALASDvSKEVAVLDVDICGPSIPRIMGLDGEQVHQSGSGWSPVYVEeNLAVMSIGFL 146
Cdd:cd02037 1 HIIAVLSGKGGVGKSTVAVNLALALAKK-GYKVGLLDADIYGPSIPRLLGVEGKPLHQSEEGIVPVEVG-GIKVMSIGFL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 147 LSsPDDAVIWRGPKKNGMIKQFLRDVDWGDLDYLIVDTPPGTSDEHLSIVQYLstaGIDGAVIITTPQEVSLQDVRKEIR 226
Cdd:cd02037 79 LP-EDDAVIWRGPMKSGAIKQFLKDVDWGELDYLIIDLPPGTGDEHLSLVQLI---PIDGAVVVTTPQEVSLIDVRKAID 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 227 FCQKVKLPIIGVVENMSGFVCPKCKNTSQIFppTTGGAERMCEELGLRLLGKVPLDPRIG 286
Cdd:cd02037 155 MCKKLNIPVLGIVENMSGFVCPHCGKKIYIF--GKGGGEKLAEELGVPFLGKIPLDPELA 212
|
|
| PRK11670 |
PRK11670 |
iron-sulfur cluster carrier protein ApbC; |
65-311 |
1.93e-63 |
|
iron-sulfur cluster carrier protein ApbC;
Pssm-ID: 183270 [Multi-domain] Cd Length: 369 Bit Score: 205.28 E-value: 1.93e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 65 VKHKILVLSGKGGVGKSTFSAHLAHALASDVSKeVAVLDVDICGPSIPRIMGLDGEQ-VHQSGSGWSPVYVEeNLAVMSI 143
Cdd:PRK11670 106 VKNIIAVSSGKGGVGKSSTAVNLALALAAEGAK-VGILDADIYGPSIPTMLGAEDQRpTSPDGTHMAPIMAH-GLATNSI 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 144 GFLLSsPDDAVIWRGPKKNGMIKQFLRDVDWGDLDYLIVDTPPGTSDEHLSIVQYLStagIDGAVIITTPQEVSLQDVRK 223
Cdd:PRK11670 184 GYLVT-DDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDIQLTLAQNIP---VTGAVVVTTPQDIALIDAKK 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 224 EIRFCQKVKLPIIGVVENMSGFVCPKCKNTSQIFppTTGGAERMCEELGLRLLGKVPLDPRIGRSCDEGRSFLAEVPDSP 303
Cdd:PRK11670 260 GIVMFEKVEVPVLGIVENMSMHICSNCGHHEPIF--GTGGAEKLAEKYHTQLLGQMPLHISLREDLDRGTPTVVSRPESE 337
|
....*...
gi 1721879820 304 AALAYSRI 311
Cdd:PRK11670 338 FTAIYRQL 345
|
|
| Mrp |
COG0489 |
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, ... |
44-249 |
2.03e-47 |
|
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440255 [Multi-domain] Cd Length: 289 Bit Score: 161.51 E-value: 2.03e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 44 ASGATKAPDPAIAEIAEKMLTVKHKILVLSGKGGVGKSTFSAHLAHALAsDVSKEVAVLDVDICGPSIPRIMGLDGEQ-- 121
Cdd:COG0489 70 LLLLLLALALLLLLLLLLLRLLLEVIAVTSGKGGEGKSTVAANLALALA-QSGKRVLLIDADLRGPSLHRMLGLENRPgl 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 122 --VHQSGSGWSPV---YVEENLAVMSIGFLLSSPDdaviwrGPKKNGMIKQFLRDVDwGDLDYLIVDTPPGTSDEHLSIV 196
Cdd:COG0489 149 sdVLAGEASLEDViqpTEVEGLDVLPAGPLPPNPS------ELLASKRLKQLLEELR-GRYDYVIIDTPPGLGVADATLL 221
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1721879820 197 QYLstagIDGAVIITTPQEVSLQDVRKEIRFCQKVKLPIIGVVENMsgfVCPK 249
Cdd:COG0489 222 ASL----VDGVLLVVRPGKTALDDVRKALEMLEKAGVPVLGVVLNM---VCPK 267
|
|
| CpaE |
COG4963 |
Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular ... |
69-315 |
7.01e-22 |
|
Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443989 [Multi-domain] Cd Length: 358 Bit Score: 94.80 E-value: 7.01e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 69 ILVLSGKGGVGKSTFSAHLAHALASDVSKEVAVLDVDICGPSIPRIMGLDGEQ----VHQSGSGWSPVYVEENLAVMSIG 144
Cdd:COG4963 105 IAVVGAKGGVGATTLAVNLAWALARESGRRVLLVDLDLQFGDVALYLDLEPRRgladALRNPDRLDETLLDRALTRHSSG 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 145 F-LLSSPDDAVIWR--GPKKNGMIKQFLRDvdwgDLDYLIVDTPPGTSDEHLSIvqyLSTAgiDGAVIITTPQEVSLQDV 221
Cdd:COG4963 185 LsVLAAPADLERAEevSPEAVERLLDLLRR----HFDYVVVDLPRGLNPWTLAA---LEAA--DEVVLVTEPDLPSLRNA 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 222 RKEIRFCQKVKLPI--IGVVENMsgfvcpkckntsqiFPPTTG-GAERMCEELGLRLLGKVPLDPR-IGRSCDEGRSFLA 297
Cdd:COG4963 256 KRLLDLLRELGLPDdkVRLVLNR--------------VPKRGEiSAKDIEEALGLPVAAVLPNDPKaVAEAANQGRPLAE 321
|
250
....*....|....*...
gi 1721879820 298 EVPDSPAALAYSRIVKSI 315
Cdd:COG4963 322 VAPKSPLAKAIRKLAARL 339
|
|
| CbiA |
pfam01656 |
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ... |
69-295 |
4.85e-21 |
|
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Pssm-ID: 426369 [Multi-domain] Cd Length: 228 Bit Score: 89.71 E-value: 4.85e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 69 ILVLSGKGGVGKSTFSAHLAHALASDvSKEVAVLDVDIcGPSIPRIMGLDGE--QVHQS------GSGW-SPVYVEENLA 139
Cdd:pfam01656 1 IAIAGTKGGVGKTTLAANLARALARR-GLRVLLIDLDP-QSNNSSVEGLEGDiaPALQAlaeglkGRVNlDPILLKEKSD 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 140 VMSIGFLLSSPD---DAVIWRGPKKNGMIKQFLRDVDwGDLDYLIVDTPPGTSDEHLSivqYLSTAgiDGAVIITTPQEV 216
Cdd:pfam01656 79 EGGLDLIPGNIDlekFEKELLGPRKEERLREALEALK-EDYDYVIIDGAPGLGELLRN---ALIAA--DYVIIPLEPEVI 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 217 SLQDVRKEIRFCQKVK-------LPIIGVVENMSGfvcpkckntsqifPPTTGGAER--MCEEL-GLRLLGKVPLDPRIG 286
Cdd:pfam01656 153 LVEDAKRLGGVIAALVggyallgLKIIGVVLNKVD-------------GDNHGKLLKeaLEELLrGLPVLGVIPRDEAVA 219
|
....*....
gi 1721879820 287 RSCDEGRSF 295
Cdd:pfam01656 220 EAPARGLPV 228
|
|
| FlhG |
COG0455 |
MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell ... |
82-315 |
5.60e-21 |
|
MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell division, chromosome partitioning, Cell motility];
Pssm-ID: 440223 [Multi-domain] Cd Length: 230 Bit Score: 89.56 E-value: 5.60e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 82 TFSAHLAHALASdVSKEVAVLDVDICGPSIPRIMGLDGEQ-VHQSGSGWSPVyvEENLAVMSIGF-LLSSPDDAVIWRGP 159
Cdd:COG0455 1 TVAVNLAAALAR-LGKRVLLVDADLGLANLDVLLGLEPKAtLADVLAGEADL--EDAIVQGPGGLdVLPGGSGPAELAEL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 160 KKNGMIKQFLRDVDwGDLDYLIVDTPPGTSDEHLSIvqyLSTAgiDGAVIITTPQEVSLQD---VRKEIRfcQKVKLPII 236
Cdd:COG0455 78 DPEERLIRVLEELE-RFYDVVLVDTGAGISDSVLLF---LAAA--DEVVVVTTPEPTSITDayaLLKLLR--RRLGVRRA 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 237 GVVENMSGfvcpkcknTSQIFPPTTGGAERMCEE-LG--LRLLGKVPLDPRIGRSCDEGRSFLAEVPDSPAALAYSRIVK 313
Cdd:COG0455 150 GVVVNRVR--------SEAEARDVFERLEQVAERfLGvrLRVLGVIPEDPAVREAVRRGRPLVLAAPDSPAARAIRELAA 221
|
..
gi 1721879820 314 SI 315
Cdd:COG0455 222 RL 223
|
|
| MinD |
cd02036 |
septum site-determining protein MinD; Septum site-determining protein MinD is part of the ... |
69-315 |
4.62e-17 |
|
septum site-determining protein MinD; Septum site-determining protein MinD is part of the operon MinCDE that determines the site of the formation of a septum at mid-cell, an important part of bacterial cell division. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein.
Pssm-ID: 349756 [Multi-domain] Cd Length: 236 Bit Score: 78.78 E-value: 4.62e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 69 ILVLSGKGGVGKSTFSAHLAHALAsDVSKEVAVLDVDICGPSIPRIMGLDG----------------EQVHQSGSGWspv 132
Cdd:cd02036 3 IVITSGKGGVGKTTTTANLGVALA-KLGKKVLLIDADIGLRNLDLILGLENrivytlvdvlegecrlEQALIKDKRW--- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 133 yveENLAVMSIGFllSSPDDAViwrGPKKngmIKQFLRDVDwGDLDYLIVDTPPGTSDEHLSIVqylstAGIDGAVIITT 212
Cdd:cd02036 79 ---ENLYLLPASQ--TRDKDAL---TPEK---LEELVKELK-DSFDFILIDSPAGIESGFINAI-----APADEAIIVTN 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 213 PQEVSLQDVRKEIRFCQKVKLPIIGVVENMsgfVCPKCKNTSQIFPPttggaERMCEELGLRLLGKVPLDPRIGRSCDEG 292
Cdd:cd02036 142 PEISSVRDADRVIGLLESKGIVNIGLIVNR---YRPEMVKSGDMLSV-----EDIQEILGIPLLGVIPEDPEVIVATNRG 213
|
250 260
....*....|....*....|...
gi 1721879820 293 RSFLAEVPDSPAALAYSRIVKSI 315
Cdd:cd02036 214 EPLVLYKPNSLAAKAFENIARRL 236
|
|
| FlhG-like |
cd02038 |
MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) ... |
69-305 |
8.70e-17 |
|
MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) is a major determinant for a variety of flagellation patterns. It effects location and number of bacterial flagella during C-ring assembly.
Pssm-ID: 349758 [Multi-domain] Cd Length: 230 Bit Score: 77.99 E-value: 8.70e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 69 ILVLSGKGGVGKSTFSAHLAHALaSDVSKEVAVLD-------VDIC-GPSIPRIMG--LDGEqvhqSGSGWSPVYVEENL 138
Cdd:cd02038 3 IAVTSGKGGVGKTNVSANLALAL-SKLGKRVLLLDadlglanLDILlGLAPKKTLGdvLKGR----VSLEDIIVEGPEGL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 139 AVMSIGfllSSPDDAVIWRGPKKNGMIKQFLRDVDwgDLDYLIVDTPPGTSDEhlsiVQYLSTAgIDGAVIITTPQEVSL 218
Cdd:cd02038 78 DIIPGG---SGMEELANLDPEQKAKLIEELSSLES--NYDYLLIDTGAGISRN----VLDFLLA-ADEVIVVTTPEPTSI 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 219 QDVRKEIRFCQKVKLPI-IGVVENMSG------FVCPKCKNTSQIFppttggaermceeLGLRL--LGKVPLDPRIGRSC 289
Cdd:cd02038 148 TDAYALIKVLSRRGGKKnFRLIVNMARspkegrATFERLKKVAKRF-------------LDINLdfVGFIPYDQSVRRAV 214
|
250
....*....|....*.
gi 1721879820 290 DEGRSFLAEVPDSPAA 305
Cdd:cd02038 215 RSQKPFVLLFPNSKAS 230
|
|
| ParA |
COG1192 |
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein ... |
69-317 |
1.00e-16 |
|
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ [Cell cycle control, cell division, chromosome partitioning, Cell motility];
Pssm-ID: 440805 [Multi-domain] Cd Length: 253 Bit Score: 78.36 E-value: 1.00e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 69 ILVLSGKGGVGKSTFSAHLAHALAsDVSKEVAVLDVDICGpSIPRIMGLDGEQVHQS-------GSGWSPVYVEENLAVM 141
Cdd:COG1192 4 IAVANQKGGVGKTTTAVNLAAALA-RRGKRVLLIDLDPQG-NLTSGLGLDPDDLDPTlydllldDAPLEDAIVPTEIPGL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 142 SIgfLLSSPD----DAVIWRGPKKNGMIKQFLRDVDwGDLDYLIVDTPPGTSdehlsivqYLSTAGI---DGAVIITTPQ 214
Cdd:COG1192 82 DL--IPANIDlagaEIELVSRPGRELRLKRALAPLA-DDYDYILIDCPPSLG--------LLTLNALaaaDSVLIPVQPE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 215 EVSLQDVRKEIRFCQKVK------LPIIGVVENMsgfVCPKCKNTSQIfppttggAERMCEELGLRLLG-KVPLDPRIGR 287
Cdd:COG1192 151 YLSLEGLAQLLETIEEVRedlnpkLEILGILLTM---VDPRTRLSREV-------LEELREEFGDKVLDtVIPRSVALAE 220
|
250 260 270
....*....|....*....|....*....|
gi 1721879820 288 SCDEGRSFLAEVPDSPAALAYSRIVKSIQE 317
Cdd:COG1192 221 APSAGKPVFEYDPKSKGAKAYRALAEELLE 250
|
|
| CooC |
COG3640 |
CO dehydrogenase nickel-insertion accessory protein CooC1 [Posttranslational modification, ... |
68-315 |
2.48e-16 |
|
CO dehydrogenase nickel-insertion accessory protein CooC1 [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 442857 [Multi-domain] Cd Length: 249 Bit Score: 77.13 E-value: 2.48e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 68 KILVlSGKGGVGKSTFSAHLAHALASDvSKEVAVLDVDIcGPSIPRIMGLDGEQvhqsgSGWSPV-----YVEENLAVMS 142
Cdd:COG3640 2 KIAV-AGKGGVGKTTLSALLARYLAEK-GKPVLAVDADP-NANLAEALGLEVEA-----DLIKPLgemreLIKERTGAPG 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 143 IGFLLSSP------DDAVIWRG---------PKK---------NGMIKQFLRDVDWGDLDYLIVDTPPGTsdEHLSivqY 198
Cdd:COG3640 74 GGMFKLNPkvddipEEYLVEGDgvdllvmgtIEEggsgcycpeNALLRALLNHLVLGNYEYVVVDMEAGI--EHLG---R 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 199 LSTAGIDGAVIITTPQEVSLQDVRKEIRFCQKVKLPIIGVVENmsgfvcpKCKNTSQIfppttggaERMCEELGLRLLGK 278
Cdd:COG3640 149 GTAEGVDLLLVVSEPSRRSIETARRIKELAEELGIKKIYLVGN-------KVREEEDE--------EFLRELLGLELLGF 213
|
250 260 270
....*....|....*....|....*....|....*..
gi 1721879820 279 VPLDPRIGRSCDEGRSfLAEVPDSPAALAYSRIVKSI 315
Cdd:COG3640 214 IPYDEEVREADLEGKP-LLDLPDSPAVAAVEEIAEKL 249
|
|
| CpaE-like |
cd03111 |
pilus assembly ATPase CpaE; This protein family consists of proteins similar to the cpaE ... |
69-312 |
1.39e-13 |
|
pilus assembly ATPase CpaE; This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Pssm-ID: 349765 [Multi-domain] Cd Length: 235 Bit Score: 69.23 E-value: 1.39e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 69 ILVLSGKGGVGKSTFSAHLAHALASDVSKEVAVLDVDICGPSIPRIMGLDGEQ----VHQSGSGWSPVYVEENLAVMSIG 144
Cdd:cd03111 3 VAVVGAKGGVGASTLAVNLAQELAQRAKDKVLLIDLDLPFGDLGLYLNLRPDYdladVIQNLDRLDRTLLDSAVTRHSSG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 145 F-LLSSP---DDAVIWRGPKKNGMIkQFLRdvdwGDLDYLIVDTPPgtsdeHLSIVQYLSTAGIDGAVIITTPQEVSLQD 220
Cdd:cd03111 83 LsLLPAPqelEDLEALGAEQVDKLL-QVLR----AFYDHIIVDLGH-----FLDEVTLAVLEAADEILLVTQQDLPSLRN 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 221 VRKEIRFC-------QKVKLpiigvVENmsgfvcpKCKNTSQIFPPTTGgaermcEELGLRLLGKVPLDPR-IGRSCDEG 292
Cdd:cd03111 153 ARRLLDSLrelegssDRLRL-----VLN-------RYDKKSEISPKDIE------EALGLEVFATLPNDYKaVSESANTG 214
|
250 260
....*....|....*....|
gi 1721879820 293 RSFLAEVPDSPAALAYSRIV 312
Cdd:cd03111 215 RPLVEVAPRSALVRALQDLA 234
|
|
| BY-kinase |
cd05387 |
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on ... |
67-241 |
9.18e-13 |
|
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.
Pssm-ID: 349772 [Multi-domain] Cd Length: 190 Bit Score: 66.05 E-value: 9.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 67 HKILVLSGKGGVGKSTFSAHLAHALASDvSKEVAVLDVDICGPSIPRIMGLDGEQ----VHQSGSGWSPV---YVEENLA 139
Cdd:cd05387 20 KVIAVTSASPGEGKSTVAANLAVALAQS-GKRVLLIDADLRRPSLHRLLGLPNEPglseVLSGQASLEDViqsTNIPNLD 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 140 VMSIGFLLSSPDDAViwRGPKKNGMIKQFLRdvdwgDLDYLIVDTPP-GTSDEHLSIVQYLstagiDGAVIITTPQEVSL 218
Cdd:cd05387 99 VLPAGTVPPNPSELL--SSPRFAELLEELKE-----QYDYVIIDTPPvLAVADALILAPLV-----DGVLLVVRAGKTRR 166
|
170 180
....*....|....*....|...
gi 1721879820 219 QDVRKEIRFCQKVKLPIIGVVEN 241
Cdd:cd05387 167 REVKEALERLEQAGAKVLGVVLN 189
|
|
| MinD |
COG2894 |
Septum site-determining ATPase MinD [Cell cycle control, cell division, chromosome ... |
69-316 |
6.62e-12 |
|
Septum site-determining ATPase MinD [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442139 [Multi-domain] Cd Length: 258 Bit Score: 64.69 E-value: 6.62e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 69 ILVLSGKGGVGKSTFSAHLAHALASdVSKEVAVLDVDIcGpsiPR----IMGLDgEQVhqsgsgwspVY-----VE---- 135
Cdd:COG2894 5 IVVTSGKGGVGKTTTTANLGTALAL-LGKKVVLIDADI-G---LRnldlVMGLE-NRI---------VYdlvdvIEgecr 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 136 -----------ENLavmsigFLL----SSPDDAViwrgpKKNGMIK--QFLRDvdwgDLDYLIVDTPPGtsdehlsIVQ- 197
Cdd:COG2894 70 lkqalikdkrfENL------YLLpasqTRDKDAL-----TPEQMKKlvEELKE----EFDYILIDSPAG-------IEQg 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 198 -YLSTAGIDGAVIITTPqEVSlqDVRKEIRfcqkvklpIIGVVENMSgfvcpkckntsqIFPP------------TTGG- 263
Cdd:COG2894 128 fKNAIAGADEAIVVTTP-EVS--SVRDADR--------IIGLLEAKG------------IRKPhliinryrpamvKRGDm 184
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1721879820 264 --AERMCEELGLRLLGKVPLDPRIGRSCDEGrsflaEV----PDSPAALAYSRIVKSIQ 316
Cdd:COG2894 185 lsVEDVLEILAIPLLGVVPEDEEVIVSSNRG-----EPvvldEKSKAGQAYRNIARRLL 238
|
|
| minD_bact |
TIGR01968 |
septum site-determining protein MinD; This model describes the bacterial and chloroplast form ... |
69-316 |
1.19e-10 |
|
septum site-determining protein MinD; This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model. [Cellular processes, Cell division]
Pssm-ID: 131023 [Multi-domain] Cd Length: 261 Bit Score: 60.81 E-value: 1.19e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 69 ILVLSGKGGVGKSTFSAHLAHALASdVSKEVAVLDVDICGPSIPRIMGLDGEQVhqsgsgWSPVYVEE------------ 136
Cdd:TIGR01968 4 IVITSGKGGVGKTTTTANLGTALAR-LGKKVVLIDADIGLRNLDLLLGLENRIV------YTLVDVVEgecrlqqalikd 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 137 ----NLAVMSIGflLSSPDDAVIWRGPKKngMIKQFLRdvdwgDLDYLIVDTPPGT-SDEHLSIvqylstAGIDGAVIIT 211
Cdd:TIGR01968 77 krlkNLYLLPAS--QTRDKDAVTPEQMKK--LVNELKE-----EFDYVIIDCPAGIeSGFRNAV------APADEAIVVT 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 212 TPQEVSLQDVRKeirfcqkvklpIIGVVENMS--------GFVCPK-CKNTSQIfppttgGAERMCEELGLRLLGKVPLD 282
Cdd:TIGR01968 142 TPEVSAVRDADR-----------VIGLLEAKGiekihlivNRLRPEmVKKGDML------SVDDVLEILSIPLIGVIPED 204
|
250 260 270
....*....|....*....|....*....|....
gi 1721879820 283 PRIGRSCDEGRSFLAEvPDSPAALAYSRIVKSIQ 316
Cdd:TIGR01968 205 EAIIVSTNKGEPVVLN-DKSRAGKAFENIARRIL 237
|
|
| SIMIBI_bact_arch |
cd03110 |
bacterial and archaeal subfamily of SIMIBI; Uncharacterized bacterial and archaeal subfamily ... |
68-280 |
1.85e-10 |
|
bacterial and archaeal subfamily of SIMIBI; Uncharacterized bacterial and archaeal subfamily of SIMIBI superfamily. Proteins in this superfamily contain an ATP-binding domain and use energy from hydrolysis of ATP to transfer electron or ion. The specific function of this family is unknown.
Pssm-ID: 349764 [Multi-domain] Cd Length: 246 Bit Score: 60.09 E-value: 1.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 68 KILVLSGKGGVGKSTFSAHLAHALasdvsKEVAVLDVDICGPSIPRIMGLDGEQVHQSGSGWSPVYVEE----------- 136
Cdd:cd03110 1 IIAVLSGKGGTGKTTITANLAVLL-----YNVILVDCDVDAPNLHLLLGPEPEEEEDFVGGKKAFIDQEkcircgncerv 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 137 -------NLAVMSIGF----------LLSSPDDAVIWRgPKKNGMIKQFLRD---------------------------- 171
Cdd:cd03110 76 ckfgailEFFQKLIVDeslcegcgacVIICPRGAIYLK-DRDTGKIFISSSDggplvhgrlnigeensgklvtelrkkal 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 172 VDWGDLDYLIVDTPPGTsdeHLSIVQylSTAGIDGAVIITTPQEVSLQDVRKEIRFCQKVKLPIIGVVenmsgfvcpkck 251
Cdd:cd03110 155 ERSKECDLAIIDGPPGT---GCPVVA--SITGADAVLLVTEPTPSGLHDLKRAIELAKHFGIPTGIVI------------ 217
|
250 260
....*....|....*....|....*....
gi 1721879820 252 NTSQIFPPTTGGAERMCEELGLRLLGKVP 280
Cdd:cd03110 218 NRYDINDEISEEIEDFADEEGIPLLGKIP 246
|
|
| PRK10818 |
PRK10818 |
septum site-determining protein MinD; |
69-328 |
2.54e-09 |
|
septum site-determining protein MinD;
Pssm-ID: 182756 [Multi-domain] Cd Length: 270 Bit Score: 57.26 E-value: 2.54e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 69 ILVLSGKGGVGKSTFSAHLAHALASDVSKEVaVLDVDICGPSIPRIMGLDGEQVH------QSGSGWSPVYVE----ENL 138
Cdd:PRK10818 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTV-VIDFDIGLRNLDLIMGCERRVVYdfvnviQGDATLNQALIKdkrtENL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 139 AVMSIGflLSSPDDAVIWRGpkkngmIKQFLRDVDWGDLDYLIVDTPPGTSDEHLsIVQYLStagiDGAVIITTPQEVSL 218
Cdd:PRK10818 84 YILPAS--QTRDKDALTREG------VAKVLDDLKAMDFEFIVCDSPAGIETGAL-MALYFA----DEAIITTNPEVSSV 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 219 QDVRKeirfcqkvklpIIGVVENMS-----------GFVCPKCKNTSQIFPPTTGGAERMCEELGLRLLGKVPLDPRIGR 287
Cdd:PRK10818 151 RDSDR-----------ILGILASKSrraengeepikEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLR 219
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1721879820 288 SCDEGRSFLAEVpDSPAALAYSRIVKSI--QEYCSNLLTEEQR 328
Cdd:PRK10818 220 ASNQGEPVILDI-EADAGKAYADTVDRLlgEERPFRFIEEEKK 261
|
|
| CooC1 |
cd02034 |
accessory protein CooC1; The accessory protein CooC1, a nickel-binding ATPase, participates in ... |
68-315 |
5.15e-09 |
|
accessory protein CooC1; The accessory protein CooC1, a nickel-binding ATPase, participates in the incorporation of nickel into the complex active site ([Ni-4Fe-4S]) cluster of Ni,Fe-dependent carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Pssm-ID: 349754 [Multi-domain] Cd Length: 249 Bit Score: 56.17 E-value: 5.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 68 KILVlSGKGGVGKSTFSAHLAHALASDvSKEVAVLDVDiCGPSIPRIMGLDGEQVHQSGSGWSpvyVEENL----AVMSI 143
Cdd:cd02034 2 KIAV-AGKGGVGKTTIAALLIRYLAKK-GGKVLAVDAD-PNSNLAETLGVEVEKLPLIKTIGD---IRERTgakkGEPPE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 144 GFLLSSPDDAVIWRG--------------PKK---------NGMIKQFLRDVDWGDLDYLIVDTPPGTsdEHLS--IVQy 198
Cdd:cd02034 76 GMSLNPYVDDIIKEIivepdgidllvmgrPEGggsgcycpvNALLRELLRHLALKNYEYVVIDMEAGI--EHLSrgTIR- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 199 lstaGIDGAVIITTPQEVSLQDVRKEIRFCQKVKLPIIGVVENMSgfvcPKCKNTSQIfppttggaermcEELG--LRLL 276
Cdd:cd02034 153 ----AVDLLIIVIEPSKRSIQTAKRIKELAEELGIKKIYLIVNKV----RNEEEQELI------------EELLikLKLI 212
|
250 260 270
....*....|....*....|....*....|....*....
gi 1721879820 277 GKVPLDPRIGRSCDEGRSFLAEvpDSPAALAYSRIVKSI 315
Cdd:cd02034 213 GVIPYDEEIMEADLKGKPLFDL--DSAAVKAIEKIVEKL 249
|
|
| ParAB_family |
cd02042 |
partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved ... |
67-242 |
2.81e-08 |
|
partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.
Pssm-ID: 349760 [Multi-domain] Cd Length: 130 Bit Score: 51.77 E-value: 2.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 67 HKILVLSGKGGVGKSTFSAHLAHALASDvSKEVAVLDVDicgpsiprimgldgeqvHQSgsgwspvyveenlavmsigfl 146
Cdd:cd02042 1 KVIAVANQKGGVGKTTLAVNLAAALALR-GKRVLLIDLD-----------------PQG--------------------- 41
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 147 lsspdDAVIWRgpkkngmikqflrdvdwgdLDYLIVDTPPGTSDEHLSIvqyLSTAgiDGAVIITTPQEVSLQDVRKEIR 226
Cdd:cd02042 42 -----SLTSWL-------------------YDYILIDTPPSLGLLTRNA---LAAA--DLVLIPVQPSPFDLDGLAKLLD 92
|
170 180
....*....|....*....|..
gi 1721879820 227 FCQKVK------LPIIGVVENM 242
Cdd:cd02042 93 TLEELKkqlnppLLILGILLTR 114
|
|
| ParA_partition |
NF041546 |
ParA family partition ATPase; |
69-105 |
8.25e-08 |
|
ParA family partition ATPase;
Pssm-ID: 469431 [Multi-domain] Cd Length: 202 Bit Score: 51.78 E-value: 8.25e-08
10 20 30
....*....|....*....|....*....|....*..
gi 1721879820 69 ILVLSGKGGVGKSTFSAHLAHALASDvSKEVAVLDVD 105
Cdd:NF041546 2 IAVLNQKGGVGKTTLATHLAAALARR-GYRVLLVDAD 37
|
|
| ArsA_ATPase |
pfam02374 |
Anion-transporting ATPase; This Pfam family represents a conserved domain, which is sometimes ... |
67-186 |
4.16e-06 |
|
Anion-transporting ATPase; This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.
Pssm-ID: 396792 Cd Length: 302 Bit Score: 47.73 E-value: 4.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 67 HKILVLSGKGGVGKSTFSAHLAHALaSDVSKEVAVLDVDIcGPSIPRIMGLDgeqvhqsgSGWSPVYVEENLAVMSIG-- 144
Cdd:pfam02374 1 MRWIFFGGKGGVGKTTVSAATAVQL-SELGKKVLLISTDP-AHSLSDSFNQK--------FGHEPTKVKENLSAMEIDpn 70
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1721879820 145 -----------------------------FLLSSP--DDAVIWrgpkkngmiKQFLRDVDWGDLDYLIVDTPP 186
Cdd:pfam02374 71 meleeywqevqkymnallglrmlegilaeELASLPgiDEAASF---------DEFKKYMDEGEYDVVVFDTAP 134
|
|
| eps_fam |
TIGR01007 |
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide ... |
69-241 |
5.94e-06 |
|
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273392 [Multi-domain] Cd Length: 204 Bit Score: 46.28 E-value: 5.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 69 ILVLSGKGGVGKSTFSAHLAHALASdVSKEVAVLDVDICGPSIP-------RIMGLDGEQVHQSGSGWSPVYVE-ENLAV 140
Cdd:TIGR01007 20 LLITSVKPGEGKSTTSANIAIAFAQ-AGYKTLLIDGDMRNSVMSgtfksqnKITGLTNFLSGTTDLSDAICDTNiENLDV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 141 MSIGFLlsSPDDAVIWRGPKKNGMIKQFLRDvdwgdLDYLIVDTPP-GTSDEHLSIVQYlstagIDGAVIITTPQEVSLQ 219
Cdd:TIGR01007 99 ITAGPV--PPNPTELLQSSNFKTLIETLRKR-----FDYIIIDTPPiGTVTDAAIIARA-----CDASILVTDAGKIKKR 166
|
170 180
....*....|....*....|..
gi 1721879820 220 DVRKEIRFCQKVKLPIIGVVEN 241
Cdd:TIGR01007 167 EVKKAKEQLEQAGSNFLGVVLN 188
|
|
| SIMIBI |
cd01983 |
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal ... |
68-105 |
8.44e-06 |
|
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal recognition particle, MinD, and BioD), consists of signal recognition particle (SRP) GTPases, the assemblage of MinD-like ATPases, which are involved in protein localization, chromosome partitioning, and membrane transport, and a group of metabolic enzymes with kinase or related phosphate transferase activity. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Pssm-ID: 349751 [Multi-domain] Cd Length: 107 Bit Score: 43.96 E-value: 8.44e-06
10 20 30
....*....|....*....|....*....|....*...
gi 1721879820 68 KILVLSGKGGVGKSTFSAHLAHALASDvSKEVAVLDVD 105
Cdd:cd01983 2 VIAVTGGKGGVGKTTLAAALAVALAAK-GYKVLLIDLD 38
|
|
| NifH-like |
cd02117 |
NifH family; This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) ... |
68-316 |
1.50e-05 |
|
NifH family; This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase, and the BchX subunit of the Chlorophyllide reductase. Members of this family use energy from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for substrate reduction
Pssm-ID: 349761 Cd Length: 266 Bit Score: 45.82 E-value: 1.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 68 KILVLSGKGGVGKSTFSAHLAHALASdVSKEVAVLDVD--------ICGPSIPR-IMGLDGEQVHQSGSGWSPVYVEENL 138
Cdd:cd02117 1 ESIVVYGKGGIGKSTTASNLSAALAE-GGKKVLHVGCDpkhdstllLTGGKVPPtIDEMLTEDGTAEELRREDLLFSGFN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 139 AVMSIGflLSSPDDAViwrGPKKNGMIK--QFLRDV---DWgDLDYLIVD-----------TPpgtsdehlsivqyLSTA 202
Cdd:cd02117 80 GVDCVE--AGGPEPGV---GCGGRGIGTmlELLEEHgllDD-DYDVVIFDvlgdvvcggfaAP-------------LRRG 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 203 GIDGAVIITTPQEVSL---QDVRKEIRFCQKVKLPIIGVVENMSGfvcpkckntsqifPPTTGGAERMCEELGLRLLGKV 279
Cdd:cd02117 141 FAQKVVIVVSEELMSLyaaNNIVKAVENYSKNGVRLAGLVANLRD-------------PAGTEEIQAFAAAVGTKILAVI 207
|
250 260 270
....*....|....*....|....*....|....*..
gi 1721879820 280 PLDPRIGRSCDEGRSFLAEVPDSPAALAYSRIVKSIQ 316
Cdd:cd02117 208 PRDPAVRRAELARVTVFEHDPVSPAASEFARLAAKIA 244
|
|
| ArsA |
COG0003 |
Anion-transporting ATPase, ArsA/GET3 family [Inorganic ion transport and metabolism]; |
68-186 |
3.37e-05 |
|
Anion-transporting ATPase, ArsA/GET3 family [Inorganic ion transport and metabolism];
Pssm-ID: 439774 Cd Length: 299 Bit Score: 44.81 E-value: 3.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 68 KILVLSGKGGVGKSTFSAHLAHALASDvSKEVAVLDVDIcGPSIPRIMGLDGeqvhqsgsGWSPVYVE-ENLAVMSIgfl 146
Cdd:COG0003 4 RIIFFTGKGGVGKTTVAAATALALAER-GKRTLLVSTDP-AHSLGDVLGTEL--------GNEPTEVAvPNLYALEI--- 70
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1721879820 147 lsSPDDAV--IWRGPKKN------------------GM--------IKQFLRDVDWgdlDYLIVDTPP 186
Cdd:COG0003 71 --DPEAELeeYWERVRAPlrgllpsagvdelaeslpGTeelaaldeLLELLEEGEY---DVIVVDTAP 133
|
|
| ArsA |
cd02035 |
Arsenical pump-driving ATPase ArsA; ArsA ATPase functions as an efflux pump located on the ... |
68-210 |
1.30e-04 |
|
Arsenical pump-driving ATPase ArsA; ArsA ATPase functions as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes, respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Pssm-ID: 349755 [Multi-domain] Cd Length: 250 Bit Score: 42.88 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 68 KILVLSGKGGVGKSTFSAHLAHALASD------VSKEVA-----VLDVDIcGPSIP-----------------------R 113
Cdd:cd02035 1 RIIFFGGKGGVGKTTIAAATAVRLAEQgkrvllVSTDPAhslsdAFGQKL-GGETPvkgapnlwameidpeealeeyweE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 114 IMGLDGEQVHQSGSGwsPVYVEEnlavmsigfLLSSP--DDAViwrgpkkngMIKQFLRDVDWGDLDYLIVDTPPG---- 187
Cdd:cd02035 80 VKELLAQYLRLPGLD--EVYAEE---------LLSLPgmDEAA---------AFDELREYVESGEYDVIVFDTAPTghtl 139
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1721879820 188 -------------------------TSDEHLSI------VQYLSTAGID-GAVII 210
Cdd:cd02035 140 rllslpleqvrellrdperttfvlvTIPEKLSIyeterlWGELQQYGIPvDGVVV 194
|
|
| minD |
CHL00175 |
septum-site determining protein; Validated |
69-220 |
1.81e-04 |
|
septum-site determining protein; Validated
Pssm-ID: 214385 [Multi-domain] Cd Length: 281 Bit Score: 42.45 E-value: 1.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 69 ILVLSGKGGVGKSTFSAHLAHALASdVSKEVAVLDVDICGPSIPRIMGLDG----------------EQVHQSGSGWSpv 132
Cdd:CHL00175 18 IVITSGKGGVGKTTTTANLGMSIAR-LGYRVALIDADIGLRNLDLLLGLENrvlytamdvlegecrlDQALIRDKRWK-- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 133 yveeNLAVMSIGfllSSPDDAVIWRgpKKNGMIKQFLRDVDWgdlDYLIVDTPPGTSdehLSIVQYLSTAgiDGAVIITT 212
Cdd:CHL00175 95 ----NLSLLAIS---KNRQRYNVTR--KNMNMLVDSLKNRGY---DYILIDCPAGID---VGFINAIAPA--QEAIVVTT 157
|
....*...
gi 1721879820 213 PQEVSLQD 220
Cdd:CHL00175 158 PEITAIRD 165
|
|
| MipZ |
pfam09140 |
ATPase MipZ; MipZ is an ATPase that forms a complex with the chromosome partitioning protein ... |
67-105 |
1.02e-03 |
|
ATPase MipZ; MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation.
Pssm-ID: 401181 [Multi-domain] Cd Length: 262 Bit Score: 40.13 E-value: 1.02e-03
10 20 30
....*....|....*....|....*....|....*....
gi 1721879820 67 HKILVLSGKGGVGKSTFSAHLAHALAsDVSKEVAVLDVD 105
Cdd:pfam09140 1 HVIVVGNEKGGSGKSTTAVHVAVALL-YKGARVAAIDLD 38
|
|
| arsen_driv_ArsA |
TIGR04291 |
arsenical pump-driving ATPase; The broader family (TIGR00345) to which the current family ... |
55-186 |
1.61e-03 |
|
arsenical pump-driving ATPase; The broader family (TIGR00345) to which the current family belongs consists of transport-energizing ATPases, including to TRC40/GET3 family involved in post-translational insertion of protein C-terminal transmembrane anchors into membranes from the cyotosolic face. This family, however, is restricted to ATPases that energize pumps that export arsenite (or antimonite).
Pssm-ID: 275109 [Multi-domain] Cd Length: 566 Bit Score: 40.07 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 55 IAEIAEKmltvKHKILVLSGKGGVGKSTFSAHLAHALA----------SDVSKEVAV-LDVDICGPSIPRImglDGEQVH 123
Cdd:TIGR04291 313 IDEIAKS----EKGLIMTMGKGGVGKTTVAAAIAVRLAnkgldvhlttSDPAAHLSVtLTGSLNNLQVSRI---DPKQET 385
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1721879820 124 QSgsgwspvYVEENLAVMSIGflLSSPDDAVI---WRGP--KKNGMIKQFLRDVDWGDLDYLIVDTPP 186
Cdd:TIGR04291 386 ER-------YRQEVLATKGKE--LDEDGKAYLeedLRSPctEEIAVFQAFSRIIREAGDRFVVMDTAP 444
|
|
| NACHT |
COG5635 |
Predicted NTPase, NACHT family domain [Signal transduction mechanisms]; |
63-94 |
2.17e-03 |
|
Predicted NTPase, NACHT family domain [Signal transduction mechanisms];
Pssm-ID: 444362 [Multi-domain] Cd Length: 935 Bit Score: 39.79 E-value: 2.17e-03
10 20 30
....*....|....*....|....*....|..
gi 1721879820 63 LTVKHKILVLSGKGGVGKSTFSAHLAHALASD 94
Cdd:COG5635 176 LEAKKKRLLILGEPGSGKTTLLRYLALELAER 207
|
|
| aroK |
PRK00131 |
shikimate kinase; Reviewed |
66-120 |
4.40e-03 |
|
shikimate kinase; Reviewed
Pssm-ID: 234654 [Multi-domain] Cd Length: 175 Bit Score: 37.48 E-value: 4.40e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721879820 66 KHKILVLSGKGGVGKSTFSAHLAHALAsdvskeVAVLDVDI-----CGPSIPRIMGLDGE 120
Cdd:PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG------YDFIDTDHliearAGKSIPEIFEEEGE 56
|
|
|