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Conserved domains on  [gi|1785379715|ref|XP_031761448|]
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myosin-10 isoform X2 [Xenopus tropicalis]

Protein Classification

myosin-10( domain architecture ID 12036895)

myosin-10 (myosin heavy chain 10 or MYH10) is a class II (conventional) non-muscle myosin, which contains two heavy chains made up of the motor/head (N-terminal) and coiled-coil tail (C-terminal) domains; the head ATPase activity and functions as a molecular motor, utilizing ATP hydrolysis to generate directed movement toward the plus end along actin filaments

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
848-1928 0e+00

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


:

Pssm-ID: 426331 [Multi-domain]  Cd Length: 1081  Bit Score: 1451.13  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  848 TRQDEVMQAKVVELQKVKDTQVKTESELKEMANKYQQLFEEKSILAEQLQAETELFAEAEEMRARLASKKQELEEILHDL 927
Cdd:pfam01576    1 TRQEEEMQAKEEELQKVKEKQQKAESELKELEKKHQQLCEEKNILAEQLQAETELFAEAEEMRARLAARKQELEEILHEL 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  928 EARVEEEEERTLQLQNEKKKMHQHIQDLEEQLEEEEGARQKLQLEKVTTESRLKKMEEDILLLEDQNAKLAKERKLLDDR 1007
Cdd:pfam01576   81 EARLEEEEERSQQLQNEKKKMQQHIQDLEEQLEEEEAARQKLQLEKVTTEAKIKKMEEDILLLEDQNNKLQKERKLLEER 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1008 IGEFTSTMAEEEEKVKSLNKLRNKYEAVIADLEDRLKKEEKGRQEMEKMKRKLDGETTDLQDQLLELQQQIEELKQQLAR 1087
Cdd:pfam01576  161 ISEFTSNLAEEEEKSKSLNKLKNKHEAMISDLEDRLKKEEKGRQELEKAKRKLEGESSDLQEQIAELQAQIAELRAQLAK 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1088 KEEELQAALARVDDEVGQKNNLLKQLRDLQSQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQE 1167
Cdd:pfam01576  241 KEEELQAALARLEEETAQKNAALKKLRELEAQLSELQEDLESERAARAKAEKQRRDLGEELEALKTELEDTLDTTAAQQE 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1168 LRAKREQEVTDLKKTIEEDVKVRDAQVTEMRQRHNQVVEEISEQLEQARRFKGNLEKVKQTLESENTDLIKEVKNLQAAK 1247
Cdd:pfam01576  321 LRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKASLEKAKQALESENAELQAELRSLQQAK 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1248 QDSEQRRKKLEQQVSEFQIRTNESEKVKFELAEKLQKLQAELDGVSGALGSTEGKSIKLTKDLSTVQSQLQDTQELLQEE 1327
Cdd:pfam01576  401 QDSEHKRKKLEGQLQELQSRLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEE 480
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1328 TRQKLNFSSRVRQLEEEKNNLMENLEEEESAKAQLSRQLQALQQQLLESKKRMEDQGGMVEAMEEAKKKSYKELEFLQQR 1407
Cdd:pfam01576  481 TRQKLNLSSRLRQLEDEKNSLQEQLEEEEEAKRNVERQLQTLQAQLSDLKKKLEEDAGAVEALEEGRKRLQRELEALTQR 560
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1408 FDEKHQINDKLEKTRNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYGEERDRAEAEAREKETKALS 1487
Cdd:pfam01576  561 LEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETKALS 640
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1488 LSRALEEAIDLKDELDRQNKQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQVQEMKTQIEELEDELQAIEDGKLRLEV 1567
Cdd:pfam01576  641 LARALEEALDAKEELERQNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEV 720
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1568 NMQAMKAQFERDLQNRDDSNDEKKKLLFKQVREMEVELEEERKQKSQILAAKKKLEMDLQDMESQMDSANKGRDEAVKQL 1647
Cdd:pfam01576  721 NMQALKAQFERDLQARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIEAANKGRDEAVKQL 800
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1648 KKLQLQFKEVWREVEETRAARDEIFVQSRDNEKKLKSLEAELLQLQEDLAAAERAKRQAQQERDDLADELSNGVSGKSAL 1727
Cdd:pfam01576  801 KKLQAQMKDLQRELDEARASRDEIFAQSKESEKKLKSLEAELLQLQEDLAAAERARRQAQQERDELAEEIASGNSGKSAL 880
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1728 LDEKRALEMRISQLEEELDEEQSNTELINDRYRKLTLQVETITTELSAERSFSQKAENARQQMERQNKELKVKLNEMDST 1807
Cdd:pfam01576  881 LDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKLTLQVEQLTTELAAERSTSQKSESARQQLERQNKELKAKLQEMEGT 960
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1808 MRSKYKITIASLEAKISQLEEQMEQESKERIIANKLVRRAEKRLKEVLLQVEEERRNADQFKEQLEKANIRMKQLKRQLE 1887
Cdd:pfam01576  961 VKSKYKSSIAALEAKIAQLEEQLEQESRERQAANKLVRRTEKKLKEVLLQVEDERRNADQYKDQAEKGNSRLKQLKRQLE 1040
                         1050      1060      1070      1080
                   ....*....|....*....|....*....|....*....|.
gi 1785379715 1888 EAEEEASRANSNRRRLQRELEDVTESAESMNREVTTLRSRL 1928
Cdd:pfam01576 1041 EAEEEASRANAARRKLQRELDDATESAEAMNREVTTLRSKL 1081
MYSc_Myh10 cd14920
class II myosin heavy chain 10, motor domain; Myosin motor domain of non-muscle myosin heavy ...
99-771 0e+00

class II myosin heavy chain 10, motor domain; Myosin motor domain of non-muscle myosin heavy chain 10 (also called NMMHCB). Mutations in this gene have been associated with May-Hegglin anomaly and developmental defects in brain and heart. Multiple transcript variants encoding different isoforms have been found for this gene. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


:

Pssm-ID: 276952 [Multi-domain]  Cd Length: 673  Bit Score: 1442.51  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTG 178
Cdd:cd14920      1 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  179 ESGAGKTENTKKVIQYLAHVASSHKGRKEHTAPGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVG 258
Cdd:cd14920     81 ESGAGKTENTKKVIQYLAHVASSHKGRKDHNIPGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRINFDVTGYIVG 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  259 ANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGNLPIPGQQDREIFQETMESMKIMGF 338
Cdd:cd14920    161 ANIETYLLEKSRAVRQAKDERTFHIFYQLLSGAGEHLKSDLLLEGFNNYRFLSNGYIPIPGQQDKDNFQETMEAMHIMGF 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  339 NHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQTKEQAD 418
Cdd:cd14920    241 SHEEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDYVQKAQTKEQAD 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  419 FAVEALAKALYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFVLEQEE 498
Cdd:cd14920    321 FAVEALAKATYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEE 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  499 YQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLSLLDEECWFPKATDKSFVEKVIQELGNHPKFQKPRQLRDKADLCII 578
Cdd:cd14920    401 YQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLALLDEECWFPKATDKTFVEKLVQEQGSHSKFQKPRQLKDKADFCII 480
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  579 HYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVDRIVGLDQVSGMGEMSFGSSYKTKKGMFRTVGQLYK 658
Cdd:cd14920    481 HYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDRFVAELWKDVDRIVGLDQVTGMTETAFGSAYKTKKGMFRTVGQLYK 560
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  659 ESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPK 738
Cdd:cd14920    561 ESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPK 640
                          650       660       670
                   ....*....|....*....|....*....|...
gi 1785379715  739 GFMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd14920    641 GFMDGKQACERMIRALELDPNLYRIGQSKIFFR 673
Myosin_N pfam02736
Myosin N-terminal SH3-like domain; This domain has an SH3-like fold. It is found at the ...
31-76 1.45e-11

Myosin N-terminal SH3-like domain; This domain has an SH3-like fold. It is found at the N-terminus of many but not all myosins. The function of this domain is unknown.


:

Pssm-ID: 426949  Cd Length: 45  Bit Score: 60.91  E-value: 1.45e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 1785379715   31 TAKRQVWVPSEKHGFEAASIKEERGEEVIVELaENGKRVPVAKDDI 76
Cdd:pfam02736    1 DAKKLVWVPDPKEGFVKGEIKEEEGDKVTVET-EDGKTVTVKKDDV 45
 
Name Accession Description Interval E-value
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
848-1928 0e+00

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 426331 [Multi-domain]  Cd Length: 1081  Bit Score: 1451.13  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  848 TRQDEVMQAKVVELQKVKDTQVKTESELKEMANKYQQLFEEKSILAEQLQAETELFAEAEEMRARLASKKQELEEILHDL 927
Cdd:pfam01576    1 TRQEEEMQAKEEELQKVKEKQQKAESELKELEKKHQQLCEEKNILAEQLQAETELFAEAEEMRARLAARKQELEEILHEL 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  928 EARVEEEEERTLQLQNEKKKMHQHIQDLEEQLEEEEGARQKLQLEKVTTESRLKKMEEDILLLEDQNAKLAKERKLLDDR 1007
Cdd:pfam01576   81 EARLEEEEERSQQLQNEKKKMQQHIQDLEEQLEEEEAARQKLQLEKVTTEAKIKKMEEDILLLEDQNNKLQKERKLLEER 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1008 IGEFTSTMAEEEEKVKSLNKLRNKYEAVIADLEDRLKKEEKGRQEMEKMKRKLDGETTDLQDQLLELQQQIEELKQQLAR 1087
Cdd:pfam01576  161 ISEFTSNLAEEEEKSKSLNKLKNKHEAMISDLEDRLKKEEKGRQELEKAKRKLEGESSDLQEQIAELQAQIAELRAQLAK 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1088 KEEELQAALARVDDEVGQKNNLLKQLRDLQSQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQE 1167
Cdd:pfam01576  241 KEEELQAALARLEEETAQKNAALKKLRELEAQLSELQEDLESERAARAKAEKQRRDLGEELEALKTELEDTLDTTAAQQE 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1168 LRAKREQEVTDLKKTIEEDVKVRDAQVTEMRQRHNQVVEEISEQLEQARRFKGNLEKVKQTLESENTDLIKEVKNLQAAK 1247
Cdd:pfam01576  321 LRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKASLEKAKQALESENAELQAELRSLQQAK 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1248 QDSEQRRKKLEQQVSEFQIRTNESEKVKFELAEKLQKLQAELDGVSGALGSTEGKSIKLTKDLSTVQSQLQDTQELLQEE 1327
Cdd:pfam01576  401 QDSEHKRKKLEGQLQELQSRLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEE 480
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1328 TRQKLNFSSRVRQLEEEKNNLMENLEEEESAKAQLSRQLQALQQQLLESKKRMEDQGGMVEAMEEAKKKSYKELEFLQQR 1407
Cdd:pfam01576  481 TRQKLNLSSRLRQLEDEKNSLQEQLEEEEEAKRNVERQLQTLQAQLSDLKKKLEEDAGAVEALEEGRKRLQRELEALTQR 560
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1408 FDEKHQINDKLEKTRNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYGEERDRAEAEAREKETKALS 1487
Cdd:pfam01576  561 LEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETKALS 640
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1488 LSRALEEAIDLKDELDRQNKQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQVQEMKTQIEELEDELQAIEDGKLRLEV 1567
Cdd:pfam01576  641 LARALEEALDAKEELERQNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEV 720
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1568 NMQAMKAQFERDLQNRDDSNDEKKKLLFKQVREMEVELEEERKQKSQILAAKKKLEMDLQDMESQMDSANKGRDEAVKQL 1647
Cdd:pfam01576  721 NMQALKAQFERDLQARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIEAANKGRDEAVKQL 800
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1648 KKLQLQFKEVWREVEETRAARDEIFVQSRDNEKKLKSLEAELLQLQEDLAAAERAKRQAQQERDDLADELSNGVSGKSAL 1727
Cdd:pfam01576  801 KKLQAQMKDLQRELDEARASRDEIFAQSKESEKKLKSLEAELLQLQEDLAAAERARRQAQQERDELAEEIASGNSGKSAL 880
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1728 LDEKRALEMRISQLEEELDEEQSNTELINDRYRKLTLQVETITTELSAERSFSQKAENARQQMERQNKELKVKLNEMDST 1807
Cdd:pfam01576  881 LDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKLTLQVEQLTTELAAERSTSQKSESARQQLERQNKELKAKLQEMEGT 960
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1808 MRSKYKITIASLEAKISQLEEQMEQESKERIIANKLVRRAEKRLKEVLLQVEEERRNADQFKEQLEKANIRMKQLKRQLE 1887
Cdd:pfam01576  961 VKSKYKSSIAALEAKIAQLEEQLEQESRERQAANKLVRRTEKKLKEVLLQVEDERRNADQYKDQAEKGNSRLKQLKRQLE 1040
                         1050      1060      1070      1080
                   ....*....|....*....|....*....|....*....|.
gi 1785379715 1888 EAEEEASRANSNRRRLQRELEDVTESAESMNREVTTLRSRL 1928
Cdd:pfam01576 1041 EAEEEASRANAARRKLQRELDDATESAEAMNREVTTLRSKL 1081
MYSc_Myh10 cd14920
class II myosin heavy chain 10, motor domain; Myosin motor domain of non-muscle myosin heavy ...
99-771 0e+00

class II myosin heavy chain 10, motor domain; Myosin motor domain of non-muscle myosin heavy chain 10 (also called NMMHCB). Mutations in this gene have been associated with May-Hegglin anomaly and developmental defects in brain and heart. Multiple transcript variants encoding different isoforms have been found for this gene. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276952 [Multi-domain]  Cd Length: 673  Bit Score: 1442.51  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTG 178
Cdd:cd14920      1 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  179 ESGAGKTENTKKVIQYLAHVASSHKGRKEHTAPGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVG 258
Cdd:cd14920     81 ESGAGKTENTKKVIQYLAHVASSHKGRKDHNIPGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRINFDVTGYIVG 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  259 ANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGNLPIPGQQDREIFQETMESMKIMGF 338
Cdd:cd14920    161 ANIETYLLEKSRAVRQAKDERTFHIFYQLLSGAGEHLKSDLLLEGFNNYRFLSNGYIPIPGQQDKDNFQETMEAMHIMGF 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  339 NHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQTKEQAD 418
Cdd:cd14920    241 SHEEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDYVQKAQTKEQAD 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  419 FAVEALAKALYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFVLEQEE 498
Cdd:cd14920    321 FAVEALAKATYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEE 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  499 YQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLSLLDEECWFPKATDKSFVEKVIQELGNHPKFQKPRQLRDKADLCII 578
Cdd:cd14920    401 YQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLALLDEECWFPKATDKTFVEKLVQEQGSHSKFQKPRQLKDKADFCII 480
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  579 HYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVDRIVGLDQVSGMGEMSFGSSYKTKKGMFRTVGQLYK 658
Cdd:cd14920    481 HYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDRFVAELWKDVDRIVGLDQVTGMTETAFGSAYKTKKGMFRTVGQLYK 560
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  659 ESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPK 738
Cdd:cd14920    561 ESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPK 640
                          650       660       670
                   ....*....|....*....|....*....|...
gi 1785379715  739 GFMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd14920    641 GFMDGKQACERMIRALELDPNLYRIGQSKIFFR 673
Myosin_head pfam00063
Myosin head (motor domain);
87-771 0e+00

Myosin head (motor domain);


Pssm-ID: 395017  Cd Length: 674  Bit Score: 1108.50  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   87 VEDMAELTCLNEASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSML 166
Cdd:pfam00063    1 VEDMVELSYLNEPSVLHNLKKRYKSDLIYTYSGLVLVAVNPYKQLPIYSEDMIKAYRGKRRGELPPHIFAIADEAYRSML 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  167 QDREDQSILCTGESGAGKTENTKKVIQYLAHVASSHKGRKEhtapGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFI 246
Cdd:pfam00063   81 QDKENQSILISGESGAGKTENTKKIMQYLASVSGSGSAGNV----GRLEEQILQSNPILEAFGNAKTVRNNNSSRFGKYI 156
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  247 RINFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGN-LPIPGQQDREI 325
Cdd:pfam00063  157 EIQFDAKGDIVGGKIETYLLEKSRVVYQAEGERNYHIFYQLLAGASAQLKKELRLTNPKDYHYLSQSGcYTIDGIDDSEE 236
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  326 FQETMESMKIMGFNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGR 405
Cdd:pfam00063  237 FKITDKAMDILGFSDEEQMGIFRIVAAILHLGNIEFKKERNDEQAVPDDTENLQKAASLLGIDSTELEKALCKRRIKTGR 316
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  406 DYVQKAQTKEQADFAVEALAKALYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQ 485
Cdd:pfam00063  317 ETVSKPQNVEQANYARDALAKAIYSRLFDWLVDRINKSLDVKTIEKASFIGVLDIYGFEIFEKNSFEQLCINYVNEKLQQ 396
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  486 LFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIERPanPPGVLSLLDEECWFPKATDKSFVEKVIQELGNHPKFQK 565
Cdd:pfam00063  397 FFNHHMFKLEQEEYVREGIEWTFIDFG-DNQPCIDLIEKK--PLGILSLLDEECLFPKATDQTFLDKLYSTFSKHPHFQK 473
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  566 PRQlRDKADLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVDRIVGLDQVSGMGEMsfgsSYKT 645
Cdd:pfam00063  474 PRL-QGETHFIIKHYAGDVEYNVEGFLEKNKDPLNDDLVSLLKSSSDPLLAELFPDYETAESAAANESGKST----PKRT 548
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  646 KKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFR 725
Cdd:pfam00063  549 KKKRFITVGSQFKESLGELMKTLNSTNPHYIRCIKPNEKKRAGVFDNSLVLHQLRCNGVLEGIRIRRAGFPNRITFQEFV 628
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|....*.
gi 1785379715  726 QRYEILTPNAIPKGFMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:pfam00063  629 QRYRILAPKTWPKWKGDAKKGCEAILQSLNLDKEEYQFGKTKIFFR 674
MYSc smart00242
Myosin. Large ATPases; ATPase; molecular motor. Muscle contraction consists of a cyclical ...
80-783 0e+00

Myosin. Large ATPases; ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.


Pssm-ID: 214580 [Multi-domain]  Cd Length: 677  Bit Score: 1014.01  E-value: 0e+00
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715    80 NPPKFTKVEDMAELTCLNEASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISE 159
Cdd:smart00242    1 NPPKFEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLPIYTDEVIKKYRGKSRGELPPHVFAIAD 80
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   160 TAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVASSHKGRkehtapGELEHQLLQANPILEAFGNAKTVKNDNS 239
Cdd:smart00242   81 NAYRNMLNDKENQSIIISGESGAGKTENTKKIMQYLASVSGSNTEV------GSVEDQILESNPILEAFGNAKTLRNNNS 154
                           170       180       190       200       210       220       230       240
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   240 SRFGKFIRINFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGNLP-IP 318
Cdd:smart00242  155 SRFGKFIEIHFDAKGKIIGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLtVD 234
                           250       260       270       280       290       300       310       320
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   319 GQQDREIFQETMESMKIMGFNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASMPDNT-AAQKLCHLLGLNVTEFSRAIL 397
Cdd:smart00242  235 GIDDAEEFKETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVKDKeELSNAAELLGVDPEELEKALT 314
                           330       340       350       360       370       380       390       400
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   398 MPRIKVGRDYVQKAQTKEQADFAVEALAKALYERLFRWLVHRINKALDrTKRQGASFIGILDIAGFEIFELNSFEQLCIN 477
Cdd:smart00242  315 KRKIKTGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINQSLS-FKDGSTYFIGVLDIYGFEIFEVNSFEQLCIN 393
                           410       420       430       440       450       460       470       480
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   478 YTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIErpANPPGVLSLLDEECWFPKATDKSFVEKVIQEL 557
Cdd:smart00242  394 YANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFF-DNQDCIDLIE--KKPPGILSLLDEECRFPKGTDQTFLEKLNQHH 470
                           490       500       510       520       530       540       550       560
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   558 GNHPKFQKPRQlRDKADLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDvdrivgldqvsgmgem 637
Cdd:smart00242  471 KKHPHFSKPKK-KGRTEFIIKHYAGDVTYDVTGFLEKNKDTLSDDLIELLQSSKNPLIASLFPS---------------- 533
                           570       580       590       600       610       620       630       640
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   638 sfGSSYKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPN 717
Cdd:smart00242  534 --GVSNAGSKKRFQTVGSQFKEQLNELMDTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLENIRIRRAGFPY 611
                           650       660       670       680       690       700
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1785379715   718 RIVFQEFRQRYEILTPNAIPKGFMDGKQACAIMIRALELDPNLYRIGQSKIFFRAGVLAHLEEERD 783
Cdd:smart00242  612 RLPFDEFLQRYRVLLPDTWPPWGGDAKKACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677
COG5022 COG5022
Myosin heavy chain [General function prediction only];
35-1245 0e+00

Myosin heavy chain [General function prediction only];


Pssm-ID: 227355 [Multi-domain]  Cd Length: 1463  Bit Score: 929.87  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   35 QVWVPSEKHGFEAASIKEERGEEVIVELA---ENGKRVPVAKDDIQ--KMNPPKFTKVEDMAELTCLNEASVLHNLKDRY 109
Cdd:COG5022     11 GCWIPDEEKGWIWAEIIKEAFNKGKVTEEgkkEDGESVSVKKKVLGndRIKLPKFDGVDDLTELSYLNEPAVLHNLEKRY 90
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  110 YSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTGESGAGKTENTK 189
Cdd:COG5022     91 NNGQIYTYSGLVLIAVNPYRDLGIYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGESGAGKTENAK 170
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  190 KVIQYLAHVASSHkgrkeHTAPGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVGANIETYLLEKS 269
Cdd:COG5022    171 RIMQYLASVTSSS-----TVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIETYLLEKS 245
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  270 RAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGNLP-IPGQQDREIFQETMESMKIMGFNHEEIMSMLK 348
Cdd:COG5022    246 RVVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDkIDGIDDAKEFKITLDALKTIGIDEEEQDQIFK 325
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  349 MVSAVLQFGNIVFRKERNtDQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQTKEQADFAVEALAKAL 428
Cdd:COG5022    326 ILAAILHIGNIEFKEDRN-GAAIFSDNSVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKAL 404
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  429 YERLFRWLVHRINKALDRTKRQGaSFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNF 508
Cdd:COG5022    405 YSNLFDWIVDRINKSLDHSAAAS-NFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSF 483
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  509 IDFgLDLQPCIDLIERpANPPGVLSLLDEECWFPKATDKSFVEKVIQEL--GNHPKFQKPRQLRDKadLCIIHYAGKVDY 586
Cdd:COG5022    484 IDY-FDNQPCIDLIEK-KNPLGILSLLDEECVMPHATDESFTSKLAQRLnkNSNPKFKKSRFRDNK--FVVKHYAGDVEY 559
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  587 KADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVDRIVgldqvsgmgemsfgssyktKKGMFRTVGQLYKESLSKLMS 666
Cdd:COG5022    560 DVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEENIE-------------------SKGRFPTLGSRFKESLNSLMS 620
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  667 TLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNA----IPKGFMD 742
Cdd:COG5022    621 TLNSTQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSPSKswtgEYTWKED 700
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  743 GKQACAIMIRALELDPNLYRIGQSKIFFRAGVLAHLEEERDLKITDIIVFFQAAARGYLARRAFYKKQQQMSALKVVQRN 822
Cdd:COG5022    701 TKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHG 780
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  823 CAAYLKLRHWQWWRLFTKVKPLLQVTRQDEVMQAKvvelqkvkdtqvkteselKEMANKYQQLFEEKSILAEQLQAETEL 902
Cdd:COG5022    781 FRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSY------------------LACIIKLQKTIKREKKLRETEEVEFSL 842
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  903 FAEAEEMRARLASKKQELEEILHDLEARVEEeeertlqLQNEKKKMHQHIQDLEEQLEEEEGARQKLQLEKVTTESRLKK 982
Cdd:COG5022    843 KAEVLIQKFGRSLKAKKRFSLLKKETIYLQS-------AQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSL 915
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  983 MEEDILLLEDQNAKLAKERKLLDDR-IGEFTSTMAEEEEKVKSLNKLRNKYEAVIADLEDRLKKEEKGRQEMEKMKRKLD 1061
Cdd:COG5022    916 SSDLIENLEFKTELIARLKKLLNNIdLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELK 995
                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1062 GETTDLQDQLLELQQQIEELKQ--QLARKEEELQAALARV---DDEVGQKNNLLKQLRDLQSQLAELhedlesekAARAK 1136
Cdd:COG5022    996 NFKKELAELSKQYGALQESTKQlkELPVEVAELQSASKIIsseSTELSILKPLQKLKGLLLLENNQL--------QARYK 1067
                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1137 AEKQRRDLGEELEALKTELEDT--LDSTAAQQELRAKReqevTDLKKTIEEDVKVRDAQVTemrqrhNQVVEEISEQLEQ 1214
Cdd:COG5022   1068 ALKLRRENSLLDDKQLYQLESTenLLKTINVKDLEVTN----RNLVKPANVLQFIVAQMIK------LNLLQEISKFLSQ 1137
                         1210      1220      1230
                   ....*....|....*....|....*....|...
gi 1785379715 1215 ArrfKGNLEKVKQTLESENTDL--IKEVKNLQA 1245
Cdd:COG5022   1138 L---VNTLEPVFQKLSVLQLELdgLFWEANLEA 1167
PTZ00014 PTZ00014
myosin-A; Provisional
97-824 2.79e-134

myosin-A; Provisional


Pssm-ID: 240229 [Multi-domain]  Cd Length: 821  Bit Score: 441.39  E-value: 2.79e-134
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   97 NEASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEI-PPHIYAISETAYRSMLQDREDQSIL 175
Cdd:PTZ00014   108 NIPCVLDFLKHRYLKNQIYTTADPLLVAINPFKDLGNTTNDWIRRYRDAKDSDKlPPHVFTTARRALENLHGVKKSQTII 187
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  176 CTGESGAGKTENTKKVIQYLAHVASSHKGRKEHTApgelehqLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGY 255
Cdd:PTZ00014   188 VSGESGAGKTEATKQIMRYFASSKSGNMDLKIQNA-------IMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGG 260
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  256 IVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGNLPIPGQQDREIFQETMESMKI 335
Cdd:PTZ00014   261 IRYGSIVAFLLEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINPKCLDVPGIDDVKDFEEVMESFDS 340
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  336 MGFNHEEIMSMLKMVSAVLQFGNIVF--RKERNTDQASM--PDNTAA-QKLCHLLGLNVTEFSRAILMPRIKVGRDYVQK 410
Cdd:PTZ00014   341 MGLSESQIEDIFSILSGVLLLGNVEIegKEEGGLTDAAAisDESLEVfNEACELLFLDYESLKKELTVKVTYAGNQKIEG 420
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  411 AQTKEQADFAVEALAKALYERLFRWLVHRINKALDRTKRQGAsFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHT 490
Cdd:PTZ00014   421 PWSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKV-FIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDI 499
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  491 MFVLEQEEYQREGIEWNFIDFgLDLQPCIDLIERPANppGVLSLLDEECWFPKATDKSFVEKVIQELGNHPKFqKPRQLR 570
Cdd:PTZ00014   500 VFERESKLYKDEGISTEELEY-TSNESVIDLLCGKGK--SVLSILEDQCLAPGGTDEKFVSSCNTNLKNNPKY-KPAKVD 575
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  571 DKADLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVdrivgldqvsgmgEMSFGssyKTKKGMF 650
Cdd:PTZ00014   576 SNKNFVIKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGV-------------EVEKG---KLAKGQL 639
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  651 rtVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEI 730
Cdd:PTZ00014   640 --IGSQFLNQLDSLMSLINSTEPHFIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFKY 717
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  731 LTPNAIPKGFMDGKQACAIMIRALELDPNLYRIGQSKIFFR---AGVLAHLEEERDLKITDIIVFFQAAARGYLARRAFy 807
Cdd:PTZ00014   718 LDLAVSNDSSLDPKEKAEKLLERSGLPKDSYAIGKTMVFLKkdaAKELTQIQREKLAAWEPLVSVLEALILKIKKKRKV- 796
                          730
                   ....*....|....*..
gi 1785379715  808 kkqqqMSALKVVQRNCA 824
Cdd:PTZ00014   797 -----RKNIKSLVRIQA 808
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
1014-1885 2.64e-30

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 131.38  E-value: 2.64e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1014 TMAEEEEKVKSLNKLrnkyEAVIADLEDRLKKEEKGRQEMEKMKRKldgETTDLQDQLLELQQQIEELKQQLARKEEELQ 1093
Cdd:COG1196    177 AERKLERTEENLERL----EDLLEELEKQLEKLERQAEKAERYQEL---KAELRELELALLLAKLKELRKELEELEEELS 249
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1094 AALARVDDEVGQKNNLLKQLRDLQSQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRAKRE 1173
Cdd:COG1196    250 RLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELK 329
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1174 QEVTDLKKTIEEdvkvRDAQVTEMRQRHNQVVEEISEQLEQARRFKGNLEKVKQTLESENTDLIKEVKNLQAAKQDSEQR 1253
Cdd:COG1196    330 EKIEALKEELEE----RETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKRE 405
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1254 RKKLEQQVSEFQIRTNEsekvkfeLAEKLQKLQAELDGVSGALGSTEGKSIKLTKDLSTVQSQLQDTQELLQEETRQKLN 1333
Cdd:COG1196    406 IESLEERLERLSERLED-------LKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQR 478
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1334 FSSRVRQLEEEKNNLMENLEEEESAKAQLSRQLQALQQQLLESKKRMEDQGGMVEAMEEAKKKSykelefLQQRFDEKHQ 1413
Cdd:COG1196    479 LEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELIKVKEKYETALEAALGNR------LQAVVVENEE 552
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1414 INDK----LEKTR---------NRLQQELDDLMVDLDHQRQIVSNLEKKQKKFD-------------QMLAEEKNISARY 1467
Cdd:COG1196    553 VAKKaiefLKENKagratflplDRIKPLRSLKSDAAPGFLGLASDLIDFDPKYEpavrfvlgdtlvvDDLEQARRLARKL 632
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1468 GEERDRAEAEAREKETKALSLSRALEEAIDLKDEldRQNKQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQVQEMKTQ 1547
Cdd:COG1196    633 RIKYRIVTLDGDLVEPSGSITGGSRNKRSSLAQK--RELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQ 710
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1548 IEELEDELQAiedgklrlevnmqamkaqferdLQNRDDSNDEKKKLLFKQVREMEVELEEERKQKSQILAAKKKLEMDLQ 1627
Cdd:COG1196    711 LEELERQLEE----------------------LKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELE 768
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1628 dmesqmdsankgrdEAVKQLKKLQLQFKEVWREVEETRAARDEIFVQSRDNEKKLKSLEAELLQLQEDLAAAERAKRQAQ 1707
Cdd:COG1196    769 --------------SLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELE 834
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1708 QERDDLADELSNGVSGKSALLDEKRALEMRISQLEEELDEEQSNTELINDRYRKLTLQVETITTELSAERSFSQKAENAR 1787
Cdd:COG1196    835 EEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERL 914
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1788 QQMERQNKELKVKLNEMDSTMRSKYKITI-ASLEAKISQLEEQMEQESKERIIANKLVRRAEKRLKEVLLQVEEERRNAD 1866
Cdd:COG1196    915 EELEAKLERLEVELPELEEELEEEYEDTLeTELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKE 994
                          890
                   ....*....|....*....
gi 1785379715 1867 QFKEQLEKanirMKQLKRQ 1885
Cdd:COG1196    995 KLLEVIEE----LDKEKRE 1009
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
861-1713 2.48e-26

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 118.24  E-value: 2.48e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  861 LQKVKD------TQVKTESELKEMANKYQQLFEEKSILaeQLQAETELFAEAEEMRARLASKKQELEEILHDLEARVEEE 934
Cdd:TIGR02168  188 LDRLEDilneleRQLKSLERQAEKAERYKELKAELREL--ELALLVLRLEELREELEELQEELKEAEEELEELTAELQEL 265
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  935 EERTLQLQNEKKKMHQHIQDLEEQLEEEEGARQKLQLEKVTTESRLKKMEEDILLLEDQNAKLAKERKLLddrigeftst 1014
Cdd:TIGR02168  266 EEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDEL---------- 335
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1015 maeeEEKVKSLNKLRNKYEAVIADLEDRLKKEEKGRQEMEKMKRKLDGETTDLQDQLLELQQQIEELKQQLARKEEELQA 1094
Cdd:TIGR02168  336 ----AEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER 411
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1095 ALARVDDEVGQKNNLLKQLRDlqSQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTELEdtldstAAQQELRAKREQ 1174
Cdd:TIGR02168  412 LEDRRERLQQEIEELLKKLEE--AELKELQAELEELEEELEELQEELERLEEALEELREELE------EAEQALDAAERE 483
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1175 evtdlkktiEEDVKVRDAQVTEMRQRHNQVVEEISEQLEQARRFKGNLEKVKQTLESEN--------------TDLIkeV 1240
Cdd:TIGR02168  484 ---------LAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEgyeaaieaalggrlQAVV--V 552
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1241 KNLQAAKQDSEQRRKKLEQQVSEFQIRTNESEKVKFELAEKLQklqaELDGVSGALGSTEGKSIKLTKDLSTVQSQLQDT 1320
Cdd:TIGR02168  553 ENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILK----NIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVV 628
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1321 QELLQE-ETRQKLNFSSRVRQLEEEKNNLMENLeeeesakaqlsrqlqalqqqlleSKKRMEDQGGMVEAMEEAKKKSyK 1399
Cdd:TIGR02168  629 DDLDNAlELAKKLRPGYRIVTLDGDLVRPGGVI-----------------------TGGSAKTNSSILERRREIEELE-E 684
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1400 ELEFLQQRFDEKHQINDKLEKTRNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYGEERDRAEAEAR 1479
Cdd:TIGR02168  685 KIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE 764
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1480 EKETKALSLSRALEEAIDLKDELDRQNKQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQVQEMKTQIEELEDELQAIE 1559
Cdd:TIGR02168  765 ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLE 844
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1560 DGKLRLEVNMQAMKAQFERDLQNRDDSNDEKKKLLfkqvremeveleeerKQKSQILAAKKKLEMDLQDMESQMDSANKG 1639
Cdd:TIGR02168  845 EQIEELSEDIESLAAEIEELEELIEELESELEALL---------------NERASLEEALALLRSELEELSEELRELESK 909
                          810       820       830       840       850       860       870
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1785379715 1640 RDEAVKQLKKLQLQFKEVWREVEETRAARDEIFVQSRDNEK-KLKSLEAELLQLQEDLAAAERAKRQAQQERDDL 1713
Cdd:TIGR02168  910 RSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSlTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
PTZ00121 PTZ00121
MAEBL; Provisional
867-1719 4.48e-19

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 94.82  E-value: 4.48e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  867 TQVKTESELKEMANKYQQLFEEKSILAEQLQAETELFAEA---EEMRARLASKKQE----LEEILHDLEARVEEEEERTL 939
Cdd:PTZ00121  1064 AHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAkktETGKAEEARKAEEakkkAEDARKAEEARKAEDARKAE 1143
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  940 QLQNEKKKMHQHIQDLEEQLEEEEGARQKLQLEKVTTESRLKKMEEDILLLEDQNAKLAKERKllddrigeftstMAEEE 1019
Cdd:PTZ00121  1144 EARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAAR------------KAEEE 1211
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1020 EKVKSLNKLRN--KYEAVIADLEDRLKKEEKGRQEMEkmkRKLDGETTDLQDQLLELQQQIEELKQQLARKEEELQAALA 1097
Cdd:PTZ00121  1212 RKAEEARKAEDakKAEAVKKAEEAKKDAEEAKKAEEE---RNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEE 1288
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1098 RVDDEVGQKNNLLKQLRDLQSQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRAKREQEVT 1177
Cdd:PTZ00121  1289 KKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEA 1368
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1178 DLKKTIEEDVKVRDA-QVTEMRQRHNQVVEEISEQLEQARRFKGNLEKVKQTLESENTdlIKEVKNLQAAKQDSEQRRKK 1256
Cdd:PTZ00121  1369 AEKKKEEAKKKADAAkKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKK--AEEKKKADEAKKKAEEAKKA 1446
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1257 LEQQVSEFQIRTNESEKVKFELAEKLQKL--QAELDGVSGALGSTEGKSIKLTKDLSTVQSQLQDTQELLQEETRQKlnf 1334
Cdd:PTZ00121  1447 DEAKKKAEEAKKAEEAKKKAEEAKKADEAkkKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKK--- 1523
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1335 SSRVRQLEE----EKNNLMENLEEEESAKAQLSRQLQALQQQLLESKKRMEDQGGMVEAMEEAKKKSYKELEFLQQRFDE 1410
Cdd:PTZ00121  1524 ADEAKKAEEakkaDEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEE 1603
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1411 KHQINDKLEKTRNRLQQELDDLMVDLDHQR---QIVSNLEKKQKKFDQMLAEEKNISARYGEERDRAEAEAREKET--KA 1485
Cdd:PTZ00121  1604 EKKMKAEEAKKAEEAKIKAEELKKAEEEKKkveQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEakKA 1683
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1486 LSLSRALEEAIDLKDELDRQNKQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQVQEMKTQIEEL---EDELQAIEDGK 1562
Cdd:PTZ00121  1684 EEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAkkdEEEKKKIAHLK 1763
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1563 LRLEVNMQAMKAQFERDLQNRDDSNDEKKKLLFKQVREMEVELEEERKQ--KSQILAAKKKLEMDLQDMESQMDSANKGR 1640
Cdd:PTZ00121  1764 KEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEggKEGNLVINDSKEMEDSAIKEVADSKNMQL 1843
                          810       820       830       840       850       860       870
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1785379715 1641 DEAvkqlkklqlqfkevwREVEETRAARDEIFVQSRDNEKKLKSleaELLQLQEDLAAAERAKRQAQQERDDLADELSN 1719
Cdd:PTZ00121  1844 EEA---------------DAFEKHKFNKNNENGEDGNKEADFNK---EKDLKEDDEEEIEEADEIEKIDKDDIEREIPN 1904
Myosin_N pfam02736
Myosin N-terminal SH3-like domain; This domain has an SH3-like fold. It is found at the ...
31-76 1.45e-11

Myosin N-terminal SH3-like domain; This domain has an SH3-like fold. It is found at the N-terminus of many but not all myosins. The function of this domain is unknown.


Pssm-ID: 426949  Cd Length: 45  Bit Score: 60.91  E-value: 1.45e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 1785379715   31 TAKRQVWVPSEKHGFEAASIKEERGEEVIVELaENGKRVPVAKDDI 76
Cdd:pfam02736    1 DAKKLVWVPDPKEGFVKGEIKEEEGDKVTVET-EDGKTVTVKKDDV 45
 
Name Accession Description Interval E-value
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
848-1928 0e+00

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 426331 [Multi-domain]  Cd Length: 1081  Bit Score: 1451.13  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  848 TRQDEVMQAKVVELQKVKDTQVKTESELKEMANKYQQLFEEKSILAEQLQAETELFAEAEEMRARLASKKQELEEILHDL 927
Cdd:pfam01576    1 TRQEEEMQAKEEELQKVKEKQQKAESELKELEKKHQQLCEEKNILAEQLQAETELFAEAEEMRARLAARKQELEEILHEL 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  928 EARVEEEEERTLQLQNEKKKMHQHIQDLEEQLEEEEGARQKLQLEKVTTESRLKKMEEDILLLEDQNAKLAKERKLLDDR 1007
Cdd:pfam01576   81 EARLEEEEERSQQLQNEKKKMQQHIQDLEEQLEEEEAARQKLQLEKVTTEAKIKKMEEDILLLEDQNNKLQKERKLLEER 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1008 IGEFTSTMAEEEEKVKSLNKLRNKYEAVIADLEDRLKKEEKGRQEMEKMKRKLDGETTDLQDQLLELQQQIEELKQQLAR 1087
Cdd:pfam01576  161 ISEFTSNLAEEEEKSKSLNKLKNKHEAMISDLEDRLKKEEKGRQELEKAKRKLEGESSDLQEQIAELQAQIAELRAQLAK 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1088 KEEELQAALARVDDEVGQKNNLLKQLRDLQSQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQE 1167
Cdd:pfam01576  241 KEEELQAALARLEEETAQKNAALKKLRELEAQLSELQEDLESERAARAKAEKQRRDLGEELEALKTELEDTLDTTAAQQE 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1168 LRAKREQEVTDLKKTIEEDVKVRDAQVTEMRQRHNQVVEEISEQLEQARRFKGNLEKVKQTLESENTDLIKEVKNLQAAK 1247
Cdd:pfam01576  321 LRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKASLEKAKQALESENAELQAELRSLQQAK 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1248 QDSEQRRKKLEQQVSEFQIRTNESEKVKFELAEKLQKLQAELDGVSGALGSTEGKSIKLTKDLSTVQSQLQDTQELLQEE 1327
Cdd:pfam01576  401 QDSEHKRKKLEGQLQELQSRLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEE 480
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1328 TRQKLNFSSRVRQLEEEKNNLMENLEEEESAKAQLSRQLQALQQQLLESKKRMEDQGGMVEAMEEAKKKSYKELEFLQQR 1407
Cdd:pfam01576  481 TRQKLNLSSRLRQLEDEKNSLQEQLEEEEEAKRNVERQLQTLQAQLSDLKKKLEEDAGAVEALEEGRKRLQRELEALTQR 560
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1408 FDEKHQINDKLEKTRNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYGEERDRAEAEAREKETKALS 1487
Cdd:pfam01576  561 LEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETKALS 640
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1488 LSRALEEAIDLKDELDRQNKQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQVQEMKTQIEELEDELQAIEDGKLRLEV 1567
Cdd:pfam01576  641 LARALEEALDAKEELERQNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEV 720
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1568 NMQAMKAQFERDLQNRDDSNDEKKKLLFKQVREMEVELEEERKQKSQILAAKKKLEMDLQDMESQMDSANKGRDEAVKQL 1647
Cdd:pfam01576  721 NMQALKAQFERDLQARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIEAANKGRDEAVKQL 800
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1648 KKLQLQFKEVWREVEETRAARDEIFVQSRDNEKKLKSLEAELLQLQEDLAAAERAKRQAQQERDDLADELSNGVSGKSAL 1727
Cdd:pfam01576  801 KKLQAQMKDLQRELDEARASRDEIFAQSKESEKKLKSLEAELLQLQEDLAAAERARRQAQQERDELAEEIASGNSGKSAL 880
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1728 LDEKRALEMRISQLEEELDEEQSNTELINDRYRKLTLQVETITTELSAERSFSQKAENARQQMERQNKELKVKLNEMDST 1807
Cdd:pfam01576  881 LDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKLTLQVEQLTTELAAERSTSQKSESARQQLERQNKELKAKLQEMEGT 960
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1808 MRSKYKITIASLEAKISQLEEQMEQESKERIIANKLVRRAEKRLKEVLLQVEEERRNADQFKEQLEKANIRMKQLKRQLE 1887
Cdd:pfam01576  961 VKSKYKSSIAALEAKIAQLEEQLEQESRERQAANKLVRRTEKKLKEVLLQVEDERRNADQYKDQAEKGNSRLKQLKRQLE 1040
                         1050      1060      1070      1080
                   ....*....|....*....|....*....|....*....|.
gi 1785379715 1888 EAEEEASRANSNRRRLQRELEDVTESAESMNREVTTLRSRL 1928
Cdd:pfam01576 1041 EAEEEASRANAARRKLQRELDDATESAEAMNREVTTLRSKL 1081
MYSc_Myh10 cd14920
class II myosin heavy chain 10, motor domain; Myosin motor domain of non-muscle myosin heavy ...
99-771 0e+00

class II myosin heavy chain 10, motor domain; Myosin motor domain of non-muscle myosin heavy chain 10 (also called NMMHCB). Mutations in this gene have been associated with May-Hegglin anomaly and developmental defects in brain and heart. Multiple transcript variants encoding different isoforms have been found for this gene. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276952 [Multi-domain]  Cd Length: 673  Bit Score: 1442.51  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTG 178
Cdd:cd14920      1 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  179 ESGAGKTENTKKVIQYLAHVASSHKGRKEHTAPGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVG 258
Cdd:cd14920     81 ESGAGKTENTKKVIQYLAHVASSHKGRKDHNIPGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRINFDVTGYIVG 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  259 ANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGNLPIPGQQDREIFQETMESMKIMGF 338
Cdd:cd14920    161 ANIETYLLEKSRAVRQAKDERTFHIFYQLLSGAGEHLKSDLLLEGFNNYRFLSNGYIPIPGQQDKDNFQETMEAMHIMGF 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  339 NHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQTKEQAD 418
Cdd:cd14920    241 SHEEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDYVQKAQTKEQAD 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  419 FAVEALAKALYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFVLEQEE 498
Cdd:cd14920    321 FAVEALAKATYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEE 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  499 YQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLSLLDEECWFPKATDKSFVEKVIQELGNHPKFQKPRQLRDKADLCII 578
Cdd:cd14920    401 YQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLALLDEECWFPKATDKTFVEKLVQEQGSHSKFQKPRQLKDKADFCII 480
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  579 HYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVDRIVGLDQVSGMGEMSFGSSYKTKKGMFRTVGQLYK 658
Cdd:cd14920    481 HYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDRFVAELWKDVDRIVGLDQVTGMTETAFGSAYKTKKGMFRTVGQLYK 560
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  659 ESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPK 738
Cdd:cd14920    561 ESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPK 640
                          650       660       670
                   ....*....|....*....|....*....|...
gi 1785379715  739 GFMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd14920    641 GFMDGKQACERMIRALELDPNLYRIGQSKIFFR 673
MYSc_class_II cd01377
class II myosins, motor domain; Myosin motor domain in class II myosins. Class II myosins, ...
99-771 0e+00

class II myosins, motor domain; Myosin motor domain in class II myosins. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. Thus, myosin II has two heads. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276951 [Multi-domain]  Cd Length: 662  Bit Score: 1313.61  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTG 178
Cdd:cd01377      1 ASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLPIYTEEVIDKYKGKRREEMPPHIFAIADNAYRNMLQDRENQSILITG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  179 ESGAGKTENTKKVIQYLAHVASSHKGRK-EHTAPGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIV 257
Cdd:cd01377     81 ESGAGKTENTKKVIQYLASVAASSKKKKeSGKKKGTLEDQILQANPILEAFGNAKTVRNNNSSRFGKFIRIHFGSTGKIA 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  258 GANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGF-NQYRFLSNGNLPIPGQQDREIFQETMESMKIM 336
Cdd:cd01377    161 GADIETYLLEKSRVVRQAKGERNYHIFYQLLSGADPELKEKLLLTGDpSYYFFLSQGELTIDGVDDAEEFKLTDEAFDIL 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  337 GFNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQTKEQ 416
Cdd:cd01377    241 GFSEEEKMSIFKIVAAILHLGNIKFKQRRREEQAELDGTEEADKAAHLLGVNSSDLLKALLKPRIKVGREWVTKGQNKEQ 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  417 ADFAVEALAKALYERLFRWLVHRINKALDrTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFVLEQ 496
Cdd:cd01377    321 VVFSVGALAKALYERLFLWLVKRINKTLD-TKSKRQYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQ 399
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  497 EEYQREGIEWNFIDFGLDLQPCIDLIERPanPPGVLSLLDEECWFPKATDKSFVEKVIQELGNHPK-FQKPRQLRDKADL 575
Cdd:cd01377    400 EEYKKEGIEWTFIDFGLDLQPTIDLIEKP--NMGILSILDEECVFPKATDKTFVEKLYSNHLGKSKnFKKPKPKKSEAHF 477
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  576 CIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVDRivgldqvsgmgEMSFGSSYKTKKGMFRTVGQ 655
Cdd:cd01377    478 ILKHYAGDVEYNIDGWLEKNKDPLNENVVALLKKSSDPLVASLFKDYEE-----------SGGGGGKKKKKGGSFRTVSQ 546
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  656 LYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNA 735
Cdd:cd01377    547 LHKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKIDAPLVLHQLRCNGVLEGIRICRKGFPNRIIFAEFKQRYSILAPNA 626
                          650       660       670
                   ....*....|....*....|....*....|....*.
gi 1785379715  736 IPKGFMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd01377    627 IPKGFDDGKAACEKILKALQLDPELYRIGNTKVFFK 662
MYSc_Myh18 cd14932
class II myosin heavy chain 18, motor domain; Myosin motor domain of muscle myosin heavy chain ...
99-771 0e+00

class II myosin heavy chain 18, motor domain; Myosin motor domain of muscle myosin heavy chain 18. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276895 [Multi-domain]  Cd Length: 676  Bit Score: 1237.60  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTG 178
Cdd:cd14932      1 ASVLHNLKERYYSGLIYTYSGLFCVVINPYKYLPIYSEEIVNMYKGKKRHEMPPHIYAITDTAYRSMMQDREDQSILCTG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  179 ESGAGKTENTKKVIQYLAHVASSHKGRKEHTAP----GELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAG 254
Cdd:cd14932     81 ESGAGKTENTKKVIQYLAYVASSFKTKKDQSSIalshGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVNG 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  255 YIVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGNLPIPGQQDREIFQETMESMK 334
Cdd:cd14932    161 YIVGANIETYLLEKSRAIRQAKDERAFHIFYYLLTGAGDKLRSELCLEDYSKYRFLSNGNVTIPGQQDKELFAETMEAFR 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  335 IMGFNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQTK 414
Cdd:cd14932    241 IMSIPEEEQTGLLKVVSAVLQLGNMSFKKERNSDQASMPDDTAAQKVCHLLGMNVTDFTRAILSPRIKVGRDYVQKAQTQ 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  415 EQADFAVEALAKALYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFVL 494
Cdd:cd14932    321 EQAEFAVEALAKASYERMFRWLVMRINKALDKTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFIL 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  495 EQEEYQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLSLLDEECWFPKATDKSFVEKVIQELGNHPKFQKPRQLRDKAD 574
Cdd:cd14932    401 EQEEYQREGIEWSFIDFGLDLQPCIELIEKPNGPPGILALLDEECWFPKATDKSFVEKVVQEQGNNPKFQKPKKLKDDAD 480
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  575 LCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVDRIVGLDQVSGMGEMSFGsSYKTKKGMFRTVG 654
Cdd:cd14932    481 FCIIHYAGKVDYKANEWLMKNMDPLNENVATLLNQSTDKFVSELWKDVDRIVGLDKVAGMGESLHG-AFKTRKGMFRTVG 559
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  655 QLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPN 734
Cdd:cd14932    560 QLYKEQLMNLMTTLRNTNPNFVRCIIPNHEKKAGKLAHHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPN 639
                          650       660       670
                   ....*....|....*....|....*....|....*..
gi 1785379715  735 AIPKGFMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd14932    640 AIPKGFMDGKQACVLMVKALELDPNLYRIGQSKVFFR 676
MYSc_Myh9 cd14919
class II myosin heavy chain 9, motor domain; Myosin motor domain of non-muscle myosin heavy ...
99-771 0e+00

class II myosin heavy chain 9, motor domain; Myosin motor domain of non-muscle myosin heavy chain 9 (also called NMMHCA, NMHC-II-A, MHA, FTNS, EPSTS, and DFNA17). Myosin is a hexameric protein composed of a pair of myosin heavy chains (MYH) and two pairs of nonidentical light chains. The encoded protein is a myosin IIA heavy chain that contains an IQ domain and a myosin head-like domain which is involved in several important functions, including cytokinesis, cell motility and maintenance of cell shape. Defects in this gene have been associated with non-syndromic sensorineural deafness autosomal dominant type 17, Epstein syndrome, Alport syndrome with macrothrombocytopenia, Sebastian syndrome, Fechtner syndrome and macrothrombocytopenia with progressive sensorineural deafness. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276883 [Multi-domain]  Cd Length: 670  Bit Score: 1196.45  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTG 178
Cdd:cd14919      1 ASVLHNLKERYYSGLIYTYSGLFCVVINPYKNLPIYSEEIVEMYKGKKRHEMPPHIYAITDTAYRSMMQDREDQSILCTG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  179 ESGAGKTENTKKVIQYLAHVASSHKGRKEHtapGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVG 258
Cdd:cd14919     81 ESGAGKTENTKKVIQYLAHVASSHKSKKDQ---GELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVNGYIVG 157
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  259 ANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGNLPIPGQQDREIFQETMESMKIMGF 338
Cdd:cd14919    158 ANIETYLLEKSRAIRQAKEERTFHIFYYLLSGAGEHLKTDLLLEPYNKYRFLSNGHVTIPGQQDKDMFQETMEAMRIMGI 237
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  339 NHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQTKEQAD 418
Cdd:cd14919    238 PEEEQMGLLRVISGVLQLGNIVFKKERNTDQASMPDNTAAQKVSHLLGINVTDFTRGILTPRIKVGRDYVQKAQTKEQAD 317
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  419 FAVEALAKALYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFVLEQEE 498
Cdd:cd14919    318 FAIEALAKATYERMFRWLVLRINKALDKTKRQGASFIGILDIAGFEIFDLNSFEQLCINYTNEKLQQLFNHTMFILEQEE 397
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  499 YQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLSLLDEECWFPKATDKSFVEKVIQELGNHPKFQKPRQLRDKADLCII 578
Cdd:cd14919    398 YQREGIEWNFIDFGLDLQPCIDLIEKPAGPPGILALLDEECWFPKATDKSFVEKVVQEQGTHPKFQKPKQLKDKADFCII 477
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  579 HYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVDRIVGLDQVSGMGEMSFGSSYKTKKGMFRTVGQLYK 658
Cdd:cd14919    478 HYAGKVDYKADEWLMKNMDPLNDNIATLLHQSSDKFVSELWKDVDRIIGLDQVAGMSETALPGAFKTRKGMFRTVGQLYK 557
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  659 ESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPK 738
Cdd:cd14919    558 EQLAKLMATLRNTNPNFVRCIIPNHEKKAGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRVVFQEFRQRYEILTPNSIPK 637
                          650       660       670
                   ....*....|....*....|....*....|...
gi 1785379715  739 GFMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd14919    638 GFMDGKQACVLMIKALELDSNLYRIGQSKVFFR 670
MYSc_Myh11 cd14921
class II myosin heavy chain 11, motor domain; Myosin motor domain of smooth muscle myosin ...
99-771 0e+00

class II myosin heavy chain 11, motor domain; Myosin motor domain of smooth muscle myosin heavy chain 11 (also called SMMHC, SMHC). The gene product is a subunit of a hexameric protein that consists of two heavy chain subunits and two pairs of non-identical light chain subunits. It functions as a major contractile protein, converting chemical energy into mechanical energy through the hydrolysis of ATP. The gene encoding a human ortholog of rat NUDE1 is transcribed from the reverse strand of this gene, and its 3' end overlaps with that of the latter. Inversion of the MYH11 locus is one of the most frequent chromosomal aberrations found in acute myeloid leukemia. Alternative splicing generates isoforms that are differentially expressed, with ratios changing during muscle cell maturation. Mutations in MYH11 have been described in individuals with thoracic aortic aneurysms leading to acute aortic dissections with patent ductus arteriosus. MYH11 mutations are also thought to contribute to human colorectal cancer and are also associated with Peutz-Jeghers syndrome. The mutations found in human intestinal neoplasia result in unregulated proteins with constitutive motor activity, similar to the mutant myh11 zebrafish. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276885 [Multi-domain]  Cd Length: 673  Bit Score: 1187.12  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTG 178
Cdd:cd14921      1 ASVLHNLRERYFSGLIYTYSGLFCVVVNPYKHLPIYSEKIVDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  179 ESGAGKTENTKKVIQYLAHVASSHKGRKEHTAPGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVG 258
Cdd:cd14921     81 ESGAGKTENTKKVIQYLAVVASSHKGKKDTSITGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVG 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  259 ANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGNLPIPGQQDREIFQETMESMKIMGF 338
Cdd:cd14921    161 ANIETYLLEKSRAIRQARDERTFHIFYYLIAGAKEKMRSDLLLEGFNNYTFLSNGFVPIPAAQDDEMFQETLEAMSIMGF 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  339 NHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQTKEQAD 418
Cdd:cd14921    241 SEEEQLSILKVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQAD 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  419 FAVEALAKALYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFVLEQEE 498
Cdd:cd14921    321 FAIEALAKATYERLFRWILTRVNKALDKTHRQGASFLGILDIAGFEIFEVNSFEQLCINYTNEKLQQLFNHTMFILEQEE 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  499 YQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLSLLDEECWFPKATDKSFVEKVIQELGNHPKFQKPRQLRDKADLCII 578
Cdd:cd14921    401 YQREGIEWNFIDFGLDLQPCIELIERPNNPPGVLALLDEECWFPKATDKSFVEKLCTEQGNHPKFQKPKQLKDKTEFSII 480
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  579 HYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVDRIVGLDQVSGMGEMSFGSSYKTKKGMFRTVGQLYK 658
Cdd:cd14921    481 HYAGKVDYNASAWLTKNMDPLNDNVTSLLNASSDKFVADLWKDVDRIVGLDQMAKMTESSLPSASKTKKGMFRTVGQLYK 560
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  659 ESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPK 738
Cdd:cd14921    561 EQLGKLMTTLRNTTPNFVRCIIPNHEKRSGKLDAFLVLEQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILAANAIPK 640
                          650       660       670
                   ....*....|....*....|....*....|...
gi 1785379715  739 GFMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd14921    641 GFMDGKQACILMIKALELDPNLYRIGQSKIFFR 673
MYSc_Myh19 cd15896
class II myosin heavy chain19, motor domain; Myosin motor domain of muscle myosin heavy chain ...
99-771 0e+00

class II myosin heavy chain19, motor domain; Myosin motor domain of muscle myosin heavy chain 19. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276899 [Multi-domain]  Cd Length: 675  Bit Score: 1173.31  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTG 178
Cdd:cd15896      1 ASVLHNLKERYYSGLIYTYSGLFCVVINPYKNLPIYSEEIVEMYKGKKRHEMPPHIYAITDTAYRSMMQDREDQSILCTG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  179 ESGAGKTENTKKVIQYLAHVASSHKGRKEHT----APGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAG 254
Cdd:cd15896     81 ESGAGKTENTKKVIQYLAHVASSHKTKKDQNslalSHGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVNG 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  255 YIVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGNLPIPGQQDREIFQETMESMK 334
Cdd:cd15896    161 YIVGANIETYLLEKSRAIRQAKEERTFHIFYYLLTGAGDKLRSELLLENYNNYRFLSNGNVTIPGQQDKDLFTETMEAFR 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  335 IMGFNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQTK 414
Cdd:cd15896    241 IMGIPEDEQIGMLKVVASVLQLGNMSFKKERHTDQASMPDNTAAQKVCHLMGMNVTDFTRAILSPRIKVGRDYVQKAQTQ 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  415 EQADFAVEALAKALYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFVL 494
Cdd:cd15896    321 EQAEFAVEALAKATYERMFRWLVMRINKALDKTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFIL 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  495 EQEEYQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLSLLDEECWFPKATDKSFVEKVIQELGNHPKFQKPRQLRDKAD 574
Cdd:cd15896    401 EQEEYQREGIEWSFIDFGLDLQPCIDLIEKPASPPGILALLDEECWFPKATDKSFVEKVLQEQGTHPKFFKPKKLKDEAD 480
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  575 LCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVDRIVGLDQVSGMGEMSfgSSYKTKKGMFRTVG 654
Cdd:cd15896    481 FCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLNQSTDKFVSELWKDVDRIVGLDKVSGMSEMP--GAFKTRKGMFRTVG 558
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  655 QLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPN 734
Cdd:cd15896    559 QLYKEQLSKLMATLRNTNPNFVRCIIPNHEKKAGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPN 638
                          650       660       670
                   ....*....|....*....|....*....|....*..
gi 1785379715  735 AIPKGFMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd15896    639 AIPKGFMDGKQACVLMIKSLELDPNLYRIGQSKVFFR 675
MYSc_Myh14_mammals cd14930
class II myosin heavy chain 14 motor domain; Myosin motor domain of non-muscle myosin heavy ...
99-771 0e+00

class II myosin heavy chain 14 motor domain; Myosin motor domain of non-muscle myosin heavy chain 14 (also called FLJ13881, KIAA2034, MHC16, MYH17). Its members include mammals, chickens, and turtles. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Some of the data used for this classification were produced by the CyMoBase team at the Max-Planck-Institute for Biophysical Chemistry. The sequence names are composed of the species abbreviation followed by the protein abbreviation and optional protein classifier and variant designations.


Pssm-ID: 276893 [Multi-domain]  Cd Length: 670  Bit Score: 1166.40  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTG 178
Cdd:cd14930      1 ASVLHNLRERYYSGLIYTYSGLFCVVINPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  179 ESGAGKTENTKKVIQYLAHVASSHKGRKEHTAPGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVG 258
Cdd:cd14930     81 ESGAGKTENTKKVIQYLAHVASSPKGRKEPGVPGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVG 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  259 ANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGNLPIPGQQdREIFQETMESMKIMGF 338
Cdd:cd14930    161 ANIETYLLEKSRAIRQAKDECSFHIFYQLLGGAGEQLKADLLLEPCSHYRFLTNGPSSSPGQE-RELFQETLESLRVLGF 239
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  339 NHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQTKEQAD 418
Cdd:cd14930    240 SHEEITSMLRMVSAVLQFGNIVLKRERNTDQATMPDNTAAQKLCRLLGLGVTDFSRALLTPRIKVGRDYVQKAQTKEQAD 319
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  419 FAVEALAKALYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFVLEQEE 498
Cdd:cd14930    320 FALEALAKATYERLFRWLVLRLNRALDRSPRQGASFLGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEE 399
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  499 YQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLSLLDEECWFPKATDKSFVEKVIQELGNHPKFQKPRQLRDKADLCII 578
Cdd:cd14930    400 YQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWFPKATDKSFVEKVAQEQGGHPKFQRPRHLRDQADFSVL 479
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  579 HYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVDRIVGLDQVSGMGEMSFGSsyKTKKGMFRTVGQLYK 658
Cdd:cd14930    480 HYAGKVDYKANEWLMKNMDPLNDNVAALLHQSTDRLTAEIWKDVEGIVGLEQVSSLGDGPPGG--RPRRGMFRTVGQLYK 557
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  659 ESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPK 738
Cdd:cd14930    558 ESLSRLMATLSNTNPSFVRCIVPNHEKRAGKLEPRLVLDQLRCNGVLEGIRICRQGFPNRILFQEFRQRYEILTPNAIPK 637
                          650       660       670
                   ....*....|....*....|....*....|...
gi 1785379715  739 GFMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd14930    638 GFMDGKQACEKMIQALELDPNLYRVGQSKIFFR 670
MYSc_Myh2_insects_mollusks cd14911
class II myosin heavy chain 2, motor domain; Myosin motor domain of type IIa skeletal muscle ...
99-771 0e+00

class II myosin heavy chain 2, motor domain; Myosin motor domain of type IIa skeletal muscle myosin heavy chain 2 (also called MYH2A, MYHSA2, MyHC-IIa, MYHas8, MyHC-2A) in insects and mollusks. This gene encodes a member of the class II or conventional myosin heavy chains, and functions in skeletal muscle contraction. Mutations in this gene results in inclusion body myopathy-3 and familial congenital myopathy. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276876 [Multi-domain]  Cd Length: 674  Bit Score: 1155.12  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTG 178
Cdd:cd14911      1 ASVLHNIKDRYYSGLIYTYSGLFCVVVNPYKKLPIYTEKIMERYKGIKRHEVPPHVFAITDSAYRNMLGDREDQSILCTG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  179 ESGAGKTENTKKVIQYLAHVASShKGRKEHTAP----------GELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRI 248
Cdd:cd14911     81 ESGAGKTENTKKVIQFLAYVAAS-KPKGSGAVPhpavnpavliGELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRI 159
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  249 NFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGNLPIPGQQDREIFQE 328
Cdd:cd14911    160 NFDASGFISGANIETYLLEKSRAIRQAKDERTFHIFYQLLAGATPEQREKFILDDVKSYAFLSNGSLPVPGVDDYAEFQA 239
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  329 TMESMKIMGFNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYV 408
Cdd:cd14911    240 TVKSMNIMGMTSEDFNSIFRIVSAVLLFGSMKFRQERNNDQATLPDNTVAQKIAHLLGLSVTDMTRAFLTPRIKVGRDFV 319
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  409 QKAQTKEQADFAVEALAKALYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFN 488
Cdd:cd14911    320 TKAQTKEQVEFAVEAIAKACYERMFKWLVNRINRSLDRTKRQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFN 399
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  489 HTMFVLEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLSLLDEECWFPKATDKSFVEKVIQELGNHPKFQKpRQ 568
Cdd:cd14911    400 HTMFILEQEEYQREGIEWKFIDFGLDLQPTIDLIDKPG---GIMALLDEECWFPKATDKTFVDKLVSAHSMHPKFMK-TD 475
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  569 LRDKADLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVDrIVGLDQvSGMGEMSFGSsyKTKKG 648
Cdd:cd14911    476 FRGVADFAIVHYAGRVDYSAAKWLMKNMDPLNENIVSLLQGSQDPFVVNIWKDAE-IVGMAQ-QALTDTQFGA--RTRKG 551
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  649 MFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRY 728
Cdd:cd14911    552 MFRTVSHLYKEQLAKLMDTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQEFRQRY 631
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|...
gi 1785379715  729 EILTPNAIPKGFMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd14911    632 ELLTPNVIPKGFMDGKKACEKMIQALELDSNLYRVGQSKIFFR 674
Myosin_head pfam00063
Myosin head (motor domain);
87-771 0e+00

Myosin head (motor domain);


Pssm-ID: 395017  Cd Length: 674  Bit Score: 1108.50  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   87 VEDMAELTCLNEASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSML 166
Cdd:pfam00063    1 VEDMVELSYLNEPSVLHNLKKRYKSDLIYTYSGLVLVAVNPYKQLPIYSEDMIKAYRGKRRGELPPHIFAIADEAYRSML 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  167 QDREDQSILCTGESGAGKTENTKKVIQYLAHVASSHKGRKEhtapGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFI 246
Cdd:pfam00063   81 QDKENQSILISGESGAGKTENTKKIMQYLASVSGSGSAGNV----GRLEEQILQSNPILEAFGNAKTVRNNNSSRFGKYI 156
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  247 RINFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGN-LPIPGQQDREI 325
Cdd:pfam00063  157 EIQFDAKGDIVGGKIETYLLEKSRVVYQAEGERNYHIFYQLLAGASAQLKKELRLTNPKDYHYLSQSGcYTIDGIDDSEE 236
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  326 FQETMESMKIMGFNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGR 405
Cdd:pfam00063  237 FKITDKAMDILGFSDEEQMGIFRIVAAILHLGNIEFKKERNDEQAVPDDTENLQKAASLLGIDSTELEKALCKRRIKTGR 316
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  406 DYVQKAQTKEQADFAVEALAKALYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQ 485
Cdd:pfam00063  317 ETVSKPQNVEQANYARDALAKAIYSRLFDWLVDRINKSLDVKTIEKASFIGVLDIYGFEIFEKNSFEQLCINYVNEKLQQ 396
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  486 LFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIERPanPPGVLSLLDEECWFPKATDKSFVEKVIQELGNHPKFQK 565
Cdd:pfam00063  397 FFNHHMFKLEQEEYVREGIEWTFIDFG-DNQPCIDLIEKK--PLGILSLLDEECLFPKATDQTFLDKLYSTFSKHPHFQK 473
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  566 PRQlRDKADLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVDRIVGLDQVSGMGEMsfgsSYKT 645
Cdd:pfam00063  474 PRL-QGETHFIIKHYAGDVEYNVEGFLEKNKDPLNDDLVSLLKSSSDPLLAELFPDYETAESAAANESGKST----PKRT 548
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  646 KKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFR 725
Cdd:pfam00063  549 KKKRFITVGSQFKESLGELMKTLNSTNPHYIRCIKPNEKKRAGVFDNSLVLHQLRCNGVLEGIRIRRAGFPNRITFQEFV 628
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|....*.
gi 1785379715  726 QRYEILTPNAIPKGFMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:pfam00063  629 QRYRILAPKTWPKWKGDAKKGCEAILQSLNLDKEEYQFGKTKIFFR 674
MYSc smart00242
Myosin. Large ATPases; ATPase; molecular motor. Muscle contraction consists of a cyclical ...
80-783 0e+00

Myosin. Large ATPases; ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.


Pssm-ID: 214580 [Multi-domain]  Cd Length: 677  Bit Score: 1014.01  E-value: 0e+00
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715    80 NPPKFTKVEDMAELTCLNEASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISE 159
Cdd:smart00242    1 NPPKFEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLPIYTDEVIKKYRGKSRGELPPHVFAIAD 80
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   160 TAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVASSHKGRkehtapGELEHQLLQANPILEAFGNAKTVKNDNS 239
Cdd:smart00242   81 NAYRNMLNDKENQSIIISGESGAGKTENTKKIMQYLASVSGSNTEV------GSVEDQILESNPILEAFGNAKTLRNNNS 154
                           170       180       190       200       210       220       230       240
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   240 SRFGKFIRINFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGNLP-IP 318
Cdd:smart00242  155 SRFGKFIEIHFDAKGKIIGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLtVD 234
                           250       260       270       280       290       300       310       320
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   319 GQQDREIFQETMESMKIMGFNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASMPDNT-AAQKLCHLLGLNVTEFSRAIL 397
Cdd:smart00242  235 GIDDAEEFKETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVKDKeELSNAAELLGVDPEELEKALT 314
                           330       340       350       360       370       380       390       400
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   398 MPRIKVGRDYVQKAQTKEQADFAVEALAKALYERLFRWLVHRINKALDrTKRQGASFIGILDIAGFEIFELNSFEQLCIN 477
Cdd:smart00242  315 KRKIKTGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINQSLS-FKDGSTYFIGVLDIYGFEIFEVNSFEQLCIN 393
                           410       420       430       440       450       460       470       480
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   478 YTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIErpANPPGVLSLLDEECWFPKATDKSFVEKVIQEL 557
Cdd:smart00242  394 YANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFF-DNQDCIDLIE--KKPPGILSLLDEECRFPKGTDQTFLEKLNQHH 470
                           490       500       510       520       530       540       550       560
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   558 GNHPKFQKPRQlRDKADLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDvdrivgldqvsgmgem 637
Cdd:smart00242  471 KKHPHFSKPKK-KGRTEFIIKHYAGDVTYDVTGFLEKNKDTLSDDLIELLQSSKNPLIASLFPS---------------- 533
                           570       580       590       600       610       620       630       640
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   638 sfGSSYKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPN 717
Cdd:smart00242  534 --GVSNAGSKKRFQTVGSQFKEQLNELMDTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLENIRIRRAGFPY 611
                           650       660       670       680       690       700
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1785379715   718 RIVFQEFRQRYEILTPNAIPKGFMDGKQACAIMIRALELDPNLYRIGQSKIFFRAGVLAHLEEERD 783
Cdd:smart00242  612 RLPFDEFLQRYRVLLPDTWPPWGGDAKKACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677
COG5022 COG5022
Myosin heavy chain [General function prediction only];
35-1245 0e+00

Myosin heavy chain [General function prediction only];


Pssm-ID: 227355 [Multi-domain]  Cd Length: 1463  Bit Score: 929.87  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   35 QVWVPSEKHGFEAASIKEERGEEVIVELA---ENGKRVPVAKDDIQ--KMNPPKFTKVEDMAELTCLNEASVLHNLKDRY 109
Cdd:COG5022     11 GCWIPDEEKGWIWAEIIKEAFNKGKVTEEgkkEDGESVSVKKKVLGndRIKLPKFDGVDDLTELSYLNEPAVLHNLEKRY 90
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  110 YSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTGESGAGKTENTK 189
Cdd:COG5022     91 NNGQIYTYSGLVLIAVNPYRDLGIYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGESGAGKTENAK 170
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  190 KVIQYLAHVASSHkgrkeHTAPGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVGANIETYLLEKS 269
Cdd:COG5022    171 RIMQYLASVTSSS-----TVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIETYLLEKS 245
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  270 RAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGNLP-IPGQQDREIFQETMESMKIMGFNHEEIMSMLK 348
Cdd:COG5022    246 RVVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDkIDGIDDAKEFKITLDALKTIGIDEEEQDQIFK 325
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  349 MVSAVLQFGNIVFRKERNtDQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQTKEQADFAVEALAKAL 428
Cdd:COG5022    326 ILAAILHIGNIEFKEDRN-GAAIFSDNSVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKAL 404
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  429 YERLFRWLVHRINKALDRTKRQGaSFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNF 508
Cdd:COG5022    405 YSNLFDWIVDRINKSLDHSAAAS-NFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSF 483
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  509 IDFgLDLQPCIDLIERpANPPGVLSLLDEECWFPKATDKSFVEKVIQEL--GNHPKFQKPRQLRDKadLCIIHYAGKVDY 586
Cdd:COG5022    484 IDY-FDNQPCIDLIEK-KNPLGILSLLDEECVMPHATDESFTSKLAQRLnkNSNPKFKKSRFRDNK--FVVKHYAGDVEY 559
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  587 KADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVDRIVgldqvsgmgemsfgssyktKKGMFRTVGQLYKESLSKLMS 666
Cdd:COG5022    560 DVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEENIE-------------------SKGRFPTLGSRFKESLNSLMS 620
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  667 TLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNA----IPKGFMD 742
Cdd:COG5022    621 TLNSTQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSPSKswtgEYTWKED 700
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  743 GKQACAIMIRALELDPNLYRIGQSKIFFRAGVLAHLEEERDLKITDIIVFFQAAARGYLARRAFYKKQQQMSALKVVQRN 822
Cdd:COG5022    701 TKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHG 780
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  823 CAAYLKLRHWQWWRLFTKVKPLLQVTRQDEVMQAKvvelqkvkdtqvkteselKEMANKYQQLFEEKSILAEQLQAETEL 902
Cdd:COG5022    781 FRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSY------------------LACIIKLQKTIKREKKLRETEEVEFSL 842
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  903 FAEAEEMRARLASKKQELEEILHDLEARVEEeeertlqLQNEKKKMHQHIQDLEEQLEEEEGARQKLQLEKVTTESRLKK 982
Cdd:COG5022    843 KAEVLIQKFGRSLKAKKRFSLLKKETIYLQS-------AQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSL 915
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  983 MEEDILLLEDQNAKLAKERKLLDDR-IGEFTSTMAEEEEKVKSLNKLRNKYEAVIADLEDRLKKEEKGRQEMEKMKRKLD 1061
Cdd:COG5022    916 SSDLIENLEFKTELIARLKKLLNNIdLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELK 995
                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1062 GETTDLQDQLLELQQQIEELKQ--QLARKEEELQAALARV---DDEVGQKNNLLKQLRDLQSQLAELhedlesekAARAK 1136
Cdd:COG5022    996 NFKKELAELSKQYGALQESTKQlkELPVEVAELQSASKIIsseSTELSILKPLQKLKGLLLLENNQL--------QARYK 1067
                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1137 AEKQRRDLGEELEALKTELEDT--LDSTAAQQELRAKReqevTDLKKTIEEDVKVRDAQVTemrqrhNQVVEEISEQLEQ 1214
Cdd:COG5022   1068 ALKLRRENSLLDDKQLYQLESTenLLKTINVKDLEVTN----RNLVKPANVLQFIVAQMIK------LNLLQEISKFLSQ 1137
                         1210      1220      1230
                   ....*....|....*....|....*....|...
gi 1785379715 1215 ArrfKGNLEKVKQTLESENTDL--IKEVKNLQA 1245
Cdd:COG5022   1138 L---VNTLEPVFQKLSVLQLELdgLFWEANLEA 1167
MYSc cd00124
Myosin motor domain superfamily; Myosin motor domain. The catalytic (head) domain has ATPase ...
99-771 0e+00

Myosin motor domain superfamily; Myosin motor domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276950  Cd Length: 633  Bit Score: 859.59  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRH-EIPPHIYAISETAYRSMLQDREDQSILCT 177
Cdd:cd00124      1 AAILHNLRERYARDLIYTYVGDILVAVNPFKWLPLYSEEVMEKYRGKGRSaDLPPHVFAVADAAYRAMLRDGQNQSILIS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  178 GESGAGKTENTKKVIQYLAHVASSHKGRKEHTApGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIV 257
Cdd:cd00124     81 GESGAGKTETTKLVLKYLAALSGSGSSKSSSSA-SSIEQQILQSNPILEAFGNAKTVRNDNSSRFGKFIELQFDPTGRLV 159
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  258 GANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFL-----SNGNLPIPGQQDREIFQETMES 332
Cdd:cd00124    160 GASIETYLLEKSRVVSQAPGERNFHIFYQLLAGLSDGAREELKLELLLSYYYLndylnSSGCDRIDGVDDAEEFQELLDA 239
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  333 MKIMGFNHEEIMSMLKMVSAVLQFGNIVF--RKERNTDQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQK 410
Cdd:cd00124    240 LDVLGFSDEEQDSIFRILAAILHLGNIEFeeDEEDEDSSAEVADDESLKAAAKLLGVDAEDLEEALTTRTIKVGGETITK 319
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  411 AQTKEQADFAVEALAKALYERLFRWLVHRINKALDRTKRQ-GASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNH 489
Cdd:cd00124    320 PLTVEQAEDARDALAKALYSRLFDWLVNRINAALSPTDAAeSTSFIGILDIFGFENFEVNSFEQLCINYANEKLQQFFNQ 399
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  490 TMFVLEQEEYQREGIEWNFIDFgLDLQPCIDLIERPanPPGVLSLLDEECWFPKATDKSFVEKVIQELGNHPKFQKPRQL 569
Cdd:cd00124    400 HVFKLEQEEYEEEGIDWSFIDF-PDNQDCLDLIEGK--PLGILSLLDEECLFPKGTDATFLEKLYSAHGSHPRFFSKKRK 476
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  570 RDKAdLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDkytaelwkdvdrivgldqvsgmgemsfgssyktkkgm 649
Cdd:cd00124    477 AKLE-FGIKHYAGDVTYDADGFLEKNKDTLPPDLVDLLRSGSQ------------------------------------- 518
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  650 frtvgqlYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYE 729
Cdd:cd00124    519 -------FRSQLDALMDTLNSTQPHFVRCIKPNDEKKPGLFDPELVLEQLRCAGVLEAVRIRRAGYPVRLPFDEFLKRYR 591
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|..
gi 1785379715  730 ILTPNAIPKGFMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd00124    592 ILAPGATEKASDSKKAAVLALLLLLKLDSSGYQLGKTKVFLR 633
MYSc_Myh7b cd14927
class II myosin heavy chain 7b, motor domain; Myosin motor domain of cardiac muscle, beta ...
99-771 0e+00

class II myosin heavy chain 7b, motor domain; Myosin motor domain of cardiac muscle, beta myosin heavy chain 7b (also called KIAA1512, dJ756N5.1, MYH14, MHC14). MYH7B is a slow-twitch myosin. Mutations in this gene result in one form of autosomal dominant hearing impairment. Multiple transcript variants encoding different isoforms have been found for this gene. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276953 [Multi-domain]  Cd Length: 676  Bit Score: 773.36  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTG 178
Cdd:cd14927      1 ASVLHNLRRRYSRWMIYTYSGLFCVTVNPYKWLPVYTAPVVAAYKGKRRSEAPPHIYAIADNAYNDMLRNRENQSMLITG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  179 ESGAGKTENTKKVIQYLAHVASSHKGRKEHTAP------GELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDV 252
Cdd:cd14927     81 ESGAGKTVNTKRVIQYFAIVAALGDGPGKKAQFlatktgGTLEDQIIEANPAMEAFGNAKTLRNDNSSRFGKFIRIHFGP 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  253 AGYIVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKtDLLLEGFN--QYRFLSNGNLPIPGQQDREIFQETM 330
Cdd:cd14927    161 TGKLASADIDIYLLEKSRVIFQQPGERSYHIYYQILSGKKPELQ-DMLLVSMNpyDYHFCSQGVTTVDNMDDGEELMATD 239
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  331 ESMKIMGFNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQK 410
Cdd:cd14927    240 HAMDILGFSPDEKYGCYKIVGAIMHFGNMKFKQKQREEQAEADGTESADKAAYLMGVSSADLLKGLLHPRVKVGNEYVTK 319
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  411 AQTKEQADFAVEALAKALYERLFRWLVHRINKALDrTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHT 490
Cdd:cd14927    320 GQSVEQVVYAVGALAKATYDRMFKWLVSRINQTLD-TKLPRQFFIGVLDIAGFEIFEFNSFEQLCINFTNEKLQQFFNHH 398
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  491 MFVLEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLSLLDEECWFPKATDKSFVEKVI-QELGNHPKFQKPR-- 567
Cdd:cd14927    399 MFILEQEEYKREGIEWVFIDFGLDLQACIDLIEKPL---GILSILEEECMFPKASDASFKAKLYdNHLGKSPNFQKPRpd 475
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  568 -QLRDKADLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVdriVGLDQVsgmGEMSFGSSYKTK 646
Cdd:cd14927    476 kKRKYEAHFEVVHYAGVVPYNIVGWLDKNKDPLNETVVAIFQKSQNKLLATLYENY---VGSDST---EDPKSGVKEKRK 549
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  647 KGM-FRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFR 725
Cdd:cd14927    550 KAAsFQTVSQLHKENLNKLMTNLRATQPHFVRCIIPNETKTPGVMDPFLVLHQLRCNGVLEGIRICRKGFPNRILYADFK 629
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|....*..
gi 1785379715  726 QRYEILTPNAIPK-GFMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd14927    630 QRYRILNPSAIPDdKFVDSRKATEKLLGSLDIDHTQYQFGHTKVFFK 676
MYSc_Myh3 cd14913
class II myosin heavy chain 3, motor domain; Myosin motor domain of fetal skeletal muscle ...
100-771 0e+00

class II myosin heavy chain 3, motor domain; Myosin motor domain of fetal skeletal muscle myosin heavy chain 3 (MYHC-EMB, MYHSE1, HEMHC, SMHCE) in tetrapods including mammals, lizards, and frogs. This gene is a member of the MYH family and encodes a protein with an IQ domain and a myosin head-like domain. Mutations in this gene have been associated with two congenital contracture (arthrogryposis) syndromes, Freeman-Sheldon syndrome and Sheldon-Hall syndrome. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276878 [Multi-domain]  Cd Length: 668  Bit Score: 768.06  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTGE 179
Cdd:cd14913      2 AVLYNLKDRYTSWMIYTYSGLFCVTVNPYKWLPVYNPEVVEGYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGE 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  180 SGAGKTENTKKVIQYLAHVASSH--KGRKEHTAPGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIV 257
Cdd:cd14913     82 SGAGKTVNTKRVIQYFATIAATGdlAKKKDSKMKGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGTTGKLA 161
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  258 GANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMkTDLLLEGFNQYR--FLSNGNLPIPGQQDREIFQETMESMKI 335
Cdd:cd14913    162 SADIETYLLEKSRVTFQLKAERSYHIFYQILSNKKPEL-IELLLITTNPYDypFISQGEILVASIDDAEELLATDSAIDI 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  336 MGFNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASmPDNT-AAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQTK 414
Cdd:cd14913    241 LGFTPEEKSGLYKLTGAVMHYGNMKFKQKQREEQAE-PDGTeVADKTAYLMGLNSSDLLKALCFPRVKVGNEYVTKGQTV 319
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  415 EQADFAVEALAKALYERLFRWLVHRINKALDrTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFVL 494
Cdd:cd14913    320 DQVHHAVNALSKSVYEKLFLWMVTRINQQLD-TKLPRQHFIGVLDIAGFEIFEYNSLEQLCINFTNEKLQQFFNHHMFVL 398
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  495 EQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLSLLDEECWFPKATDKSFVEKVI-QELGNHPKFQKPRQLRDKA 573
Cdd:cd14913    399 EQEEYKKEGIEWTFIDFGMDLAACIELIEKPM---GIFSILEEECMFPKATDTSFKNKLYdQHLGKSNNFQKPKVVKGRA 475
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  574 D--LCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVDrivgldqvSGMGEMSFGSSYKTKKGMFR 651
Cdd:cd14913    476 EahFSLIHYAGTVDYSVSGWLEKNKDPLNETVVGLYQKSSNRLLAHLYATFA--------TADADSGKKKVAKKKGSSFQ 547
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  652 TVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEIL 731
Cdd:cd14913    548 TVSALFRENLNKLMSNLRTTHPHFVRCIIPNETKTPGAMEHSLVLHQLRCNGVLEGIRICRKGFPNRILYGDFKQRYRVL 627
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|.
gi 1785379715  732 TPNAIPKG-FMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd14913    628 NASAIPEGqFIDSKKACEKLLASIDIDHTQYKFGHTKVFFK 668
MYSc_Myh1_insects_crustaceans cd14909
class II myosin heavy chain 1, motor domain; Myosin motor domain of type IIx skeletal muscle ...
99-771 0e+00

class II myosin heavy chain 1, motor domain; Myosin motor domain of type IIx skeletal muscle myosin heavy chain 1 (also called MYHSA1, MYHa, MyHC-2X/D, MGC133384) in insects and crustaceans. Myh1 is a type I skeletal muscle myosin that in Humans is encoded by the MYH1 gene. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276874  Cd Length: 666  Bit Score: 760.15  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTG 178
Cdd:cd14909      1 ASVLHNLRQRYYAKLIYTYSGLFCVAINPYKRYPVYTNRCAKMYRGKRRNEVPPHIFAISDGAYVDMLTNHVNQSMLITG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  179 ESGAGKTENTKKVIQYLAHVASSHKGRKEHTAPGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVG 258
Cdd:cd14909     81 ESGAGKTENTKKVIAYFATVGASKKTDEAAKSKGSLEDQVVQTNPVLEAFGNAKTVRNDNSSRFGKFIRIHFGPTGKLAG 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  259 ANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLL-EGFNQYRFLSNGNLPIPGQQDREIFQETMESMKIMG 337
Cdd:cd14909    161 ADIETYLLEKARVISQQSLERSYHIFYQIMSGSVPGVKEMCLLsDNIYDYYIVSQGKVTVPNVDDGEEFSLTDQAFDILG 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  338 FNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQTKEQA 417
Cdd:cd14909    241 FTKQEKEDVYRITAAVMHMGGMKFKQRGREEQAEQDGEEEGGRVSKLFGCDTAELYKNLLKPRIKVGNEFVTQGRNVQQV 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  418 DFAVEALAKALYERLFRWLVHRINKALDrTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFVLEQE 497
Cdd:cd14909    321 TNSIGALCKGVFDRLFKWLVKKCNETLD-TQQKRQHFIGVLDIAGFEIFEYNGFEQLCINFTNEKLQQFFNHHMFVLEQE 399
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  498 EYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLSLLDEECWFPKATDKSFVEKVI-QELGNHPKFQKPRQLR---DKA 573
Cdd:cd14909    400 EYKREGIDWAFIDFGMDLLACIDLIEKPM---GILSILEEESMFPKATDQTFSEKLTnTHLGKSAPFQKPKPPKpgqQAA 476
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  574 DLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDvdrivGLDQVSGMGEMSFGSsyKTKKGMFRTV 653
Cdd:cd14909    477 HFAIAHYAGCVSYNITGWLEKNKDPLNDTVVDQFKKSQNKLLIEIFAD-----HAGQSGGGEQAKGGR--GKKGGGFATV 549
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  654 GQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTP 733
Cdd:cd14909    550 SSAYKEQLNSLMTTLRSTQPHFVRCIIPNEMKQPGVVDAHLVMHQLTCNGVLEGIRICRKGFPNRMMYPDFKMRYKILNP 629
                          650       660       670
                   ....*....|....*....|....*....|....*...
gi 1785379715  734 NAIpKGFMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd14909    630 AGI-QGEEDPKKAAEIILESIALDPDQYRLGHTKVFFR 666
MYSc_Myh16 cd14934
class II myosin heavy chain 16, motor domain; Myosin motor domain of myosin heavy chain 16 ...
99-771 0e+00

class II myosin heavy chain 16, motor domain; Myosin motor domain of myosin heavy chain 16 pseudogene (also called MHC20, MYH16, and myh5), encoding a sarcomeric myosin heavy chain expressed in nonhuman primate masticatory muscles, is inactivated in humans. This cd contains Myh16 in mammals. MYH16 has intermediate fibres between that of slow type 1 and fast 2B fibres, but exert more force than any other fibre type examined. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Some of the data used for this classification were produced by the CyMoBase team at the Max-Planck-Institute for Biophysical Chemistry. The sequence names are composed of the species abbreviation followed by the protein abbreviation and optional protein classifier and variant designations.


Pssm-ID: 276896 [Multi-domain]  Cd Length: 659  Bit Score: 729.90  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTG 178
Cdd:cd14934      1 ASVLDNLRQRYTNMRIYTYSGLFCVTVNPYKWLPIYGARVANMYKGKKRTEMPPHLFSISDNAYHDMLMDRENQSMLITG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  179 ESGAGKTENTKKVIQYLAHVASShkGRKEHTAPGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVG 258
Cdd:cd14934     81 ESGAGKTENTKKVIQYFANIGGT--GKQSSDGKGSLEDQIIQANPVLEAFGNAKTTRNNNSSRFGKFIRIHFGTTGKLAG 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  259 ANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAG-EHMKTDLLLEGFNQYRFLSNGNLPIPGQQDREIFQETMESMKIMG 337
Cdd:cd14934    159 ADIESYLLEKSRVISQQAAERGYHIFYQILSNKKpELIESLLLVPNPKEYHWVSQGVTVVDNMDDGEELQITDVAFDVLG 238
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  338 FNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQTKEQA 417
Cdd:cd14934    239 FSAEEKIGVYKLTGGIMHFGNMKFKQKPREEQAEVDTTEVADKVAHLMGLNSGELQKGITRPRVKVGNEFVQKGQNMEQC 318
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  418 DFAVEALAKALYERLFRWLVHRINKALDrTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFVLEQE 497
Cdd:cd14934    319 NNSIGALGKAVYDKMFKWLVVRINKTLD-TKMQRQFFIGVLDIAGFEIFEFNSFEQLCINFTNEKLQQFFNHHMFVLEQE 397
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  498 EYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLSLLDEECWFPKATDKSFVEKVI-QELGNHPKFQKPRQLRDK---A 573
Cdd:cd14934    398 EYKREGIEWVFIDFGLDLQACIDLLEKPM---GIFSILEEQCVFPKATDATFKAALYdNHLGKSSNFLKPKGGKGKgpeA 474
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  574 DLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDvdrivgldqvsgmgEMSFGSSYKTKKGM-FRT 652
Cdd:cd14934    475 HFELVHYAGTVGYNITGWLEKNKDPLNETVVGLFQKSSLGLLALLFKE--------------EEAPAGSKKQKRGSsFMT 540
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  653 VGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILT 732
Cdd:cd14934    541 VSNFYREQLNKLMTTLHSTAPHFVRCIVPNEFKQSGVVDAHLIMHQLACNGVLEGIRICRKGFPNRLQYPEFKQRYQVLN 620
                          650       660       670
                   ....*....|....*....|....*....|....*....
gi 1785379715  733 PNAIPKGFMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd14934    621 PNVIPQGFVDNKKASELLLGSIDLDVNEYKIGHTKVFFR 659
MYSc_Myo5 cd01380
class V myosin, motor domain; Myo5, also called heavy chain 12, myoxin, are dimeric myosins ...
100-771 0e+00

class V myosin, motor domain; Myo5, also called heavy chain 12, myoxin, are dimeric myosins that transport a variety of intracellular cargo processively along actin filaments, such as melanosomes, synaptic vesicles, vacuoles, and mRNA. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. It also contains a IQ domain and a globular DIL domain. Myosin V is a class of actin-based motor proteins involved in cytoplasmic vesicle transport and anchorage, spindle-pole alignment and mRNA translocation. The protein encoded by this gene is abundant in melanocytes and nerve cells. Mutations in this gene cause Griscelli syndrome type-1 (GS1), Griscelli syndrome type-3 (GS3) and neuroectodermal melanolysosomal disease, or Elejalde disease. Multiple alternatively spliced transcript variants encoding different isoforms have been reported, but the full-length nature of some variants has not been determined. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Note that the Dictyostelium myoVs are not contained in this child group. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276831 [Multi-domain]  Cd Length: 629  Bit Score: 725.49  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  100 SVLHNLKDRYYSG-LIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTG 178
Cdd:cd01380      2 AVLHNLKVRFCQRnAIYTYCGIVLVAINPYEDLPIYGEDIIQAYSGQNMGELDPHIFAIAEEAYRQMARDEKNQSIIVSG 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  179 ESGAGKTENTKKVIQYLAHVASSHKGrkEHtapgELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVG 258
Cdd:cd01380     82 ESGAGKTVSAKYAMRYFATVGGSSSG--ET----QVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIEILFDKNYRIIG 155
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  259 ANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGNLP-IPGQQDREIFQETMESMKIMG 337
Cdd:cd01380    156 ANMRTYLLEKSRVVFQAEEERNYHIFYQLCAAASLPELKELHLGSAEDFFYTNQGGSPvIDGVDDAAEFEETRKALTLLG 235
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  338 FNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQTKEQA 417
Cdd:cd01380    236 ISEEEQMEIFRILAAILHLGNVEIKATRNDSASISPDDEHLQIACELLGIDESQLAKWLCKRKIVTRSEVIVKPLTLQQA 315
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  418 DFAVEALAKALYERLFRWLVHRINKALDRTKRQGA-SFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFVLEQ 496
Cdd:cd01380    316 IVARDALAKHIYAQLFDWIVDRINKALASPVKEKQhSFIGVLDIYGFETFEVNSFEQFCINYANEKLQQQFNQHVFKLEQ 395
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  497 EEYQREGIEWNFIDFgLDLQPCIDLIErpaNPPGVLSLLDEECWFPKATDKSFVEKVIQELGNHPK--FQKPRqLRDKAD 574
Cdd:cd01380    396 EEYVKEEIEWSFIDF-YDNQPCIDLIE---GKLGILDLLDEECRLPKGSDENWAQKLYNQHLKKPNkhFKKPR-FSNTAF 470
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  575 LcIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKytaelwkdvdrivgldqvsgmgemsfgssyktKKgmfrTVG 654
Cdd:cd01380    471 I-VKHFADDVEYQVEGFLEKNRDTVSEEHLNVLKASKNR--------------------------------KK----TVG 513
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  655 QLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPN 734
Cdd:cd01380    514 SQFRDSLILLMETLNSTTPHYVRCIKPNDEKLPFTFDPKRVVQQLRACGVLETIRISAAGFPSRWTYEEFFSRYRVLLPS 593
                          650       660       670
                   ....*....|....*....|....*....|....*..
gi 1785379715  735 AIPKGfMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd01380    594 KEWLR-DDKKKTCENILENLILDPDKYQFGKTKIFFR 629
MYSc_Myh15_mammals cd14929
class II myosin heavy chain 15, motor domain; Myosin motor domain of sarcomeric myosin heavy ...
99-771 0e+00

class II myosin heavy chain 15, motor domain; Myosin motor domain of sarcomeric myosin heavy chain 15 in mammals (also called KIAA1000) . MYH15 is a slow-twitch myosin. Myh15 is a ventricular myosin heavy chain. Myh15 is absent in embryonic and fetal muscles and is found in orbital layer of extraocular muscles at birth. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276892 [Multi-domain]  Cd Length: 662  Bit Score: 707.89  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTG 178
Cdd:cd14929      1 ASVLHTLRRRYDHWMIYTYSGLFCVTINPYKWLPVYQKEVMAAYKGKRRSEAPPHIFAVANNAFQDMLHNRENQSILFTG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  179 ESGAGKTENTKKVIQYLAHVASSHKGRKEHtapGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVG 258
Cdd:cd14929     81 ESGAGKTVNTKHIIQYFATIAAMIESKKKL---GALEDQIMQANPVLEAFGNAKTLRNDNSSRFGKFIRMHFGARGMLSS 157
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  259 ANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGNLPIPGQQDREIFQETMESMKIMGF 338
Cdd:cd14929    158 ADIDIYLLEKSRVIFQQPGERNYHIFYQILSGKKELRDLLLVSANPSDFHFCSCGAVAVESLDDAEELLATEQAMDILGF 237
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  339 NHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQTKEQAD 418
Cdd:cd14929    238 LPDEKYGCYKLTGAIMHFGNMKFKQKPREEQLEADGTENADKAAFLMGINSSELVKGLIHPRIKVGNEYVTRSQNIEQVT 317
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  419 FAVEALAKALYERLFRWLVHRINKALDrTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFVLEQEE 498
Cdd:cd14929    318 YAVGALSKSIYERMFKWLVARINRVLD-AKLSRQFFIGILDITGFEILDYNSLEQLCINFTNEKLQQFFNQHMFVLEQEE 396
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  499 YQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLSLLDEECWFPKATDKSFVEKVI-QELGNHPKFQKPRQLRDK--ADL 575
Cdd:cd14929    397 YRKEGIDWVSIDFGLDLQACIDLIEKPM---GIFSILEEECMFPKATDLTFKTKLFdNHFGKSVHFQKPKPDKKKfeAHF 473
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  576 CIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKdvdrivglDQVSGMGEMSFGSSYKTKKGMFRTVGQ 655
Cdd:cd14929    474 ELVHYAGVVPYNISGWLEKNKDLLNETVVAVFQKSSNRLLASLFE--------NYISTDSAIQFGEKKRKKGASFQTVAS 545
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  656 LYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNA 735
Cdd:cd14929    546 LHKENLNKLMTNLKSTAPHFVRCINPNVNKIPGVLDPYLVLQQLRCNGVLEGIRICREGFPNRLLYADFKQRYCILNPRT 625
                          650       660       670
                   ....*....|....*....|....*....|....*..
gi 1785379715  736 IPKG-FMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd14929    626 FPKSkFVSSRKAAEELLGSLEIDHTQYRFGITKVFFK 662
MYSc_Myh7 cd14917
class II myosin heavy chain 7, motor domain; Myosin motor domain of beta (or slow) type I ...
100-771 0e+00

class II myosin heavy chain 7, motor domain; Myosin motor domain of beta (or slow) type I cardiac muscle myosin heavy chain 7 (also called CMH1, MPD1, and CMD1S). Muscle myosin is a hexameric protein containing 2 heavy chain subunits, 2 alkali light chain subunits, and 2 regulatory light chain subunits. It is expressed predominantly in normal human ventrical and in skeletal muscle tissues rich in slow-twitch type I muscle fibers. Changes in the relative abundance of this protein and the alpha (or fast) heavy subunit of cardiac myosin correlate with the contractile velocity of cardiac muscle. Its expression is also altered during thyroid hormone depletion and hemodynamic overloading. Mutations in this gene are associated with familial hypertrophic cardiomyopathy, myosin storage myopathy, dilated cardiomyopathy, and Laing early-onset distal myopathy. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276881 [Multi-domain]  Cd Length: 668  Bit Score: 706.10  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTGE 179
Cdd:cd14917      2 AVLYNLKERYASWMIYTYSGLFCVTVNPYKWLPVYNAEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGE 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  180 SGAGKTENTKKVIQYLAHVASSHKGRKEHTAPGE--LEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIV 257
Cdd:cd14917     82 SGAGKTVNTKRVIQYFAVIAAIGDRSKKDQTPGKgtLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLA 161
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  258 GANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMkTDLLLEGFN--QYRFLSNGNLPIPGQQDREIFQETMESMKI 335
Cdd:cd14917    162 SADIETYLLEKSRVIFQLKAERDYHIFYQILSNKKPEL-LDMLLITNNpyDYAFISQGETTVASIDDAEELMATDNAFDV 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  336 MGFNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASmPDNT-AAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQTK 414
Cdd:cd14917    241 LGFTSEEKNSMYKLTGAIMHFGNMKFKQKQREEQAE-PDGTeEADKSAYLMGLNSADLLKGLCHPRVKVGNEYVTKGQNV 319
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  415 EQADFAVEALAKALYERLFRWLVHRINKALDrTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFVL 494
Cdd:cd14917    320 QQVIYATGALAKAVYEKMFNWMVTRINATLE-TKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVL 398
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  495 EQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLSLLDEECWFPKATDKSFVEKVI-QELGNHPKFQKPRQLRDK- 572
Cdd:cd14917    399 EQEEYKKEGIEWTFIDFGMDLQACIDLIEKPM---GIMSILEEECMFPKATDMTFKAKLFdNHLGKSNNFQKPRNIKGKp 475
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  573 -ADLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVdriVGLDQV--SGMGEMSFGSSyktkkgm 649
Cdd:cd14917    476 eAHFSLIHYAGTVDYNIIGWLQKNKDPLNETVVGLYQKSSLKLLSNLFANY---AGADAPieKGKGKAKKGSS------- 545
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  650 FRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYE 729
Cdd:cd14917    546 FQTVSALHRENLNKLMTNLRSTHPHFVRCIIPNETKSPGVMDNPLVMHQLRCNGVLEGIRICRKGFPNRILYGDFRQRYR 625
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|...
gi 1785379715  730 ILTPNAIPKG-FMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd14917    626 ILNPAAIPEGqFIDSRKGAEKLLSSLDIDHNQYKFGHTKVFFK 668
MYSc_Myh8 cd14918
class II myosin heavy chain 8, motor domain; Myosin motor domain of perinatal skeletal muscle ...
101-771 0e+00

class II myosin heavy chain 8, motor domain; Myosin motor domain of perinatal skeletal muscle myosin heavy chain 8 (also called MyHC-peri, MyHC-pn). Myosin is a hexameric protein composed of a pair of myosin heavy chains (MYH) and two pairs of nonidentical light chains. A mutation in this gene results in trismus-pseudocamptodactyly syndrome. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276882 [Multi-domain]  Cd Length: 668  Bit Score: 688.78  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  101 VLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTGES 180
Cdd:cd14918      3 VLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNPEVVAAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGES 82
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  181 GAGKTENTKKVIQYLAHVASSHKGRKEHTAP--GELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVG 258
Cdd:cd14918     83 GAGKTVNTKRVIQYFATIAVTGEKKKEESGKmqGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGTTGKLAS 162
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  259 ANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMkTDLLLEGFN--QYRFLSNGNLPIPGQQDREIFQETMESMKIM 336
Cdd:cd14918    163 ADIETYLLEKSRVTFQLKAERSYHIFYQITSNKKPDL-IEMLLITTNpyDYAFVSQGEITVPSIDDQEELMATDSAIDIL 241
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  337 GFNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASmPDNT-AAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQTKE 415
Cdd:cd14918    242 GFTPEEKVSIYKLTGAVMHYGNMKFKQKQREEQAE-PDGTeVADKAAYLQSLNSADLLKALCYPRVKVGNEYVTKGQTVQ 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  416 QADFAVEALAKALYERLFRWLVHRINKALDrTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFVLE 495
Cdd:cd14918    321 QVYNAVGALAKAVYEKMFLWMVTRINQQLD-TKQPRQYFIGVLDIAGFEIFDFNSLEQLCINFTNEKLQQFFNHHMFVLE 399
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  496 QEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLSLLDEECWFPKATDKSFVEKVI-QELGNHPKFQKPRQLRDKAD 574
Cdd:cd14918    400 QEEYKKEGIEWTFIDFGMDLAACIELIEKPL---GIFSILEEECMFPKATDTSFKNKLYdQHLGKSANFQKPKVVKGKAE 476
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  575 --LCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVdrivgldqVSGMGEMSFGSSYKTKKGMFRT 652
Cdd:cd14918    477 ahFSLIHYAGTVDYNITGWLDKNKDPLNDTVVGLYQKSAMKTLASLFSTY--------ASAEADSGAKKGAKKKGSSFQT 548
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  653 VGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILT 732
Cdd:cd14918    549 VSALFRENLNKLMTNLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCNGVLEGIRICRKGFPSRILYGDFKQRYKVLN 628
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|
gi 1785379715  733 PNAIPKG-FMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd14918    629 ASAIPEGqFIDSKKASEKLLASIDIDHTQYKFGHTKVFFK 668
MYSc_Myh2_mammals cd14912
class II myosin heavy chain 2, motor domain; Myosin motor domain of type IIa skeletal muscle ...
100-771 0e+00

class II myosin heavy chain 2, motor domain; Myosin motor domain of type IIa skeletal muscle myosin heavy chain 2 (also called MYH2A, MYHSA2, MyHC-IIa, MYHas8, MyHC-2A) in mammals. Mutations in this gene results in inclusion body myopathy-3 and familial congenital myopathy. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276877 [Multi-domain]  Cd Length: 673  Bit Score: 687.62  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTGE 179
Cdd:cd14912      2 AVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNPEVVTAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGE 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  180 SGAGKTENTKKVIQYLAHVASSHKGRKEHTAPGE----LEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGY 255
Cdd:cd14912     82 SGAGKTVNTKRVIQYFATIAVTGEKKKEEITSGKmqgtLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGTTGK 161
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  256 IVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMkTDLLLEGFN--QYRFLSNGNLPIPGQQDREIFQETMESM 333
Cdd:cd14912    162 LASADIETYLLEKSRVTFQLKAERSYHIFYQITSNKKPEL-IEMLLITTNpyDYPFVSQGEISVASIDDQEELMATDSAI 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  334 KIMGFNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASmPDNT-AAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQ 412
Cdd:cd14912    241 DILGFTNEEKVSIYKLTGAVMHYGNLKFKQKQREEQAE-PDGTeVADKAAYLQSLNSADLLKALCYPRVKVGNEYVTKGQ 319
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  413 TKEQADFAVEALAKALYERLFRWLVHRINKALDrTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMF 492
Cdd:cd14912    320 TVEQVTNAVGALAKAVYEKMFLWMVARINQQLD-TKQPRQYFIGVLDIAGFEIFDFNSLEQLCINFTNEKLQQFFNHHMF 398
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  493 VLEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLSLLDEECWFPKATDKSFVEKVI-QELGNHPKFQKPRQLRD 571
Cdd:cd14912    399 VLEQEEYKKEGIEWTFIDFGMDLAACIELIEKPM---GIFSILEEECMFPKATDTSFKNKLYeQHLGKSANFQKPKVVKG 475
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  572 KAD--LCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVDRIVGldQVSGMGEMSFGssyKTKKGM 649
Cdd:cd14912    476 KAEahFSLIHYAGVVDYNITGWLDKNKDPLNETVVGLYQKSAMKTLAYLFSGAQTAEG--ASAGGGAKKGG---KKKGSS 550
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  650 FRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYE 729
Cdd:cd14912    551 FQTVSALFRENLNKLMTNLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCNGVLEGIRICRKGFPSRILYADFKQRYK 630
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|...
gi 1785379715  730 ILTPNAIPKG-FMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd14912    631 VLNASAIPEGqFIDSKKASEKLLASIDIDHTQYKFGHTKVFFK 673
MYSc_Myh6 cd14916
class II myosin heavy chain 6, motor domain; Myosin motor domain of alpha (or fast) cardiac ...
100-771 0e+00

class II myosin heavy chain 6, motor domain; Myosin motor domain of alpha (or fast) cardiac muscle myosin heavy chain 6. Cardiac muscle myosin is a hexamer consisting of two heavy chain subunits, two light chain subunits, and two regulatory subunits. This gene encodes the alpha heavy chain subunit of cardiac myosin. Mutations in this gene cause familial hypertrophic cardiomyopathy and atrial septal defect. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276880 [Multi-domain]  Cd Length: 670  Bit Score: 687.18  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTGE 179
Cdd:cd14916      2 AVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNAEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGE 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  180 SGAGKTENTKKVIQYLAHVAS-SHKGRKE--HTAPGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYI 256
Cdd:cd14916     82 SGAGKTVNTKRVIQYFASIAAiGDRSKKEnpNANKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIHFGATGKL 161
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  257 VGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMkTDLLLEGFN--QYRFLSNGNLPIPGQQDREIFQETMESMK 334
Cdd:cd14916    162 ASADIETYLLEKSRVIFQLKAERNYHIFYQILSNKKPEL-LDMLLVTNNpyDYAFVSQGEVSVASIDDSEELLATDSAFD 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  335 IMGFNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASmPDNTA-AQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQT 413
Cdd:cd14916    241 VLGFTAEEKAGVYKLTGAIMHYGNMKFKQKQREEQAE-PDGTEdADKSAYLMGLNSADLLKGLCHPRVKVGNEYVTKGQS 319
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  414 KEQADFAVEALAKALYERLFRWLVHRINKALDrTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFV 493
Cdd:cd14916    320 VQQVYYSIGALAKSVYEKMFNWMVTRINATLE-TKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFV 398
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  494 LEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLSLLDEECWFPKATDKSFVEKVI-QELGNHPKFQKPRQLRDK 572
Cdd:cd14916    399 LEQEEYKKEGIEWEFIDFGMDLQACIDLIEKPM---GIMSILEEECMFPKASDMTFKAKLYdNHLGKSNNFQKPRNVKGK 475
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  573 --ADLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVDRIVGLDQVSGMGEMSFGSSyktkkgmF 650
Cdd:cd14916    476 qeAHFSLVHYAGTVDYNILGWLEKNKDPLNETVVGLYQKSSLKLMATLFSTYASADTGDSGKGKGGKKKGSS-------F 548
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  651 RTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEI 730
Cdd:cd14916    549 QTVSALHRENLNKLMTNLKTTHPHFVRCIIPNERKAPGVMDNPLVMHQLRCNGVLEGIRICRKGFPNRILYGDFRQRYRI 628
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|..
gi 1785379715  731 LTPNAIPKG-FMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd14916    629 LNPAAIPEGqFIDSRKGAEKLLGSLDIDHNQYKFGHTKVFFK 670
MYSc_Myh1_mammals cd14910
class II myosin heavy chain 1, motor domain; Myosin motor domain of type IIx skeletal muscle ...
100-771 0e+00

class II myosin heavy chain 1, motor domain; Myosin motor domain of type IIx skeletal muscle myosin heavy chain 1 (also called MYHSA1, MYHa, MyHC-2X/D, MGC133384) in mammals. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276875 [Multi-domain]  Cd Length: 671  Bit Score: 682.61  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTGE 179
Cdd:cd14910      2 AVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNAEVVTAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGE 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  180 SGAGKTENTKKVIQYLAHVASSHKGRKEHTAPGE----LEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGY 255
Cdd:cd14910     82 SGAGKTVNTKRVIQYFATIAVTGEKKKEEATSGKmqgtLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGTTGK 161
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  256 IVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMkTDLLLEGFN--QYRFLSNGNLPIPGQQDREIFQETMESM 333
Cdd:cd14910    162 LASADIETYLLEKSRVTFQLKAERSYHIFYQIMSNKKPDL-IEMLLITTNpyDYAFVSQGEITVPSIDDQEELMATDSAI 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  334 KIMGFNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASmPDNT-AAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQ 412
Cdd:cd14910    241 EILGFTSDERVSIYKLTGAVMHYGNMKFKQKQREEQAE-PDGTeVADKAAYLQNLNSADLLKALCYPRVKVGNEYVTKGQ 319
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  413 TKEQADFAVEALAKALYERLFRWLVHRINKALDrTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMF 492
Cdd:cd14910    320 TVQQVYNAVGALAKAVYDKMFLWMVTRINQQLD-TKQPRQYFIGVLDIAGFEIFDFNSLEQLCINFTNEKLQQFFNHHMF 398
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  493 VLEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLSLLDEECWFPKATDKSFVEKVI-QELGNHPKFQKPRQLRD 571
Cdd:cd14910    399 VLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPM---GIFSILEEECMFPKATDTSFKNKLYeQHLGKSNNFQKPKPAKG 475
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  572 K--ADLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVdrivgldqVSGMGEMSFGSSYKTKKG- 648
Cdd:cd14910    476 KveAHFSLIHYAGTVDYNIAGWLDKNKDPLNETVVGLYQKSSMKTLALLFSGA--------AAAEAEEGGGKKGGKKKGs 547
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  649 MFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRY 728
Cdd:cd14910    548 SFQTVSALFRENLNKLMTNLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCNGVLEGIRICRKGFPSRILYADFKQRY 627
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|....
gi 1785379715  729 EILTPNAIPKG-FMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd14910    628 KVLNASAIPEGqFIDSKKASEKLLGSIDIDHTQYKFGHTKVFFK 671
MYSc_Myh13 cd14923
class II myosin heavy chain 13, motor domain; Myosin motor domain of skeletal muscle myosin ...
100-771 0e+00

class II myosin heavy chain 13, motor domain; Myosin motor domain of skeletal muscle myosin heavy chain 13 (also called MyHC-eo) in mammals, chicken, and green anole. Myh13 is a myosin whose expression is restricted primarily to the extrinsic eye muscles which are specialized for function in eye movement. Class II myosins, also called conventional myosins, are the myosin type responsible for producing muscle contraction in muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276887 [Multi-domain]  Cd Length: 671  Bit Score: 681.80  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTGE 179
Cdd:cd14923      2 AVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNPEVVAAYRGKKRQEAPPHIFSISDNAYQFMLTDRDNQSILITGE 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  180 SGAGKTENTKKVIQYLAHVASSHKGRKEHTA---PGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYI 256
Cdd:cd14923     82 SGAGKTVNTKRVIQYFATIAVTGDKKKEQQPgkmQGTLEDQIIQANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGATGKL 161
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  257 VGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMkTDLLLEGFNQYR--FLSNGNLPIPGQQDREIFQETMESMK 334
Cdd:cd14923    162 ASADIETYLLEKSRVTFQLSSERSYHIFYQIMSNKKPEL-IDLLLISTNPFDfpFVSQGEVTVASIDDSEELLATDNAID 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  335 IMGFNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASmPDNT-AAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQT 413
Cdd:cd14923    241 ILGFSSEEKVGIYKLTGAVMHYGNMKFKQKQREEQAE-PDGTeVADKAGYLMGLNSAEMLKGLCCPRVKVGNEYVTKGQN 319
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  414 KEQADFAVEALAKALYERLFRWLVHRINKALDrTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFV 493
Cdd:cd14923    320 VQQVTNSVGALAKAVYEKMFLWMVTRINQQLD-TKQPRQYFIGVLDIAGFEIFDFNSLEQLCINFTNEKLQQFFNHHMFV 398
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  494 LEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLSLLDEECWFPKATDKSFVEKVI-QELGNHPKFQKPRQLRDK 572
Cdd:cd14923    399 LEQEEYKKEGIEWEFIDFGMDLAACIELIEKPM---GIFSILEEECMFPKATDTSFKNKLYdQHLGKSNNFQKPKPAKGK 475
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  573 AD--LCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVdriVGLDQVSGMGEMSFGssyKTKKGMF 650
Cdd:cd14923    476 AEahFSLVHYAGTVDYNIAGWLDKNKDPLNETVVGLYQKSSLKLLSFLFSNY---AGAEAGDSGGSKKGG---KKKGSSF 549
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  651 RTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEI 730
Cdd:cd14923    550 QTVSAVFRENLNKLMTNLRSTHPHFVRCLIPNETKTPGVMDHYLVMHQLRCNGVLEGIRICRKGFPSRILYADFKQRYRI 629
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|..
gi 1785379715  731 LTPNAIPKG-FMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd14923    630 LNASAIPEGqFIDSKNASEKLLNSIDVDREQYRFGHTKVFFK 671
MYSc_Myh4 cd14915
class II myosin heavy chain 4, motor domain; Myosin motor domain of skeletal muscle myosin ...
100-771 0e+00

class II myosin heavy chain 4, motor domain; Myosin motor domain of skeletal muscle myosin heavy chain 4 (also called MYH2B, MyHC-2B, MyHC-IIb). Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276879 [Multi-domain]  Cd Length: 671  Bit Score: 674.52  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTGE 179
Cdd:cd14915      2 AVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNPEVVTAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGE 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  180 SGAGKTENTKKVIQYLAHVASSHKGRKEHTAPGE----LEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGY 255
Cdd:cd14915     82 SGAGKTVNTKRVIQYFATIAVTGEKKKEEAASGKmqgtLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGATGK 161
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  256 IVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMkTDLLLEGFNQYRF--LSNGNLPIPGQQDREIFQETMESM 333
Cdd:cd14915    162 LASADIETYLLEKSRVTFQLKAERSYHIFYQIMSNKKPEL-IEMLLITTNPYDFafVSQGEITVPSIDDQEELMATDSAV 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  334 KIMGFNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASmPDNT-AAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQ 412
Cdd:cd14915    241 DILGFSADEKVAIYKLTGAVMHYGNMKFKQKQREEQAE-PDGTeVADKAAYLTSLNSADLLKALCYPRVKVGNEYVTKGQ 319
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  413 TKEQADFAVEALAKALYERLFRWLVHRINKALDrTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMF 492
Cdd:cd14915    320 TVQQVYNSVGALAKAIYEKMFLWMVTRINQQLD-TKQPRQYFIGVLDIAGFEIFDFNSLEQLCINFTNEKLQQFFNHHMF 398
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  493 VLEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLSLLDEECWFPKATDKSFVEKVI-QELGNHPKFQKPRQLRD 571
Cdd:cd14915    399 VLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPM---GIFSILEEECMFPKATDTSFKNKLYeQHLGKSNNFQKPKPAKG 475
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  572 KAD--LCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVDRIvgldQVSGMGEMSFGssyKTKKGM 649
Cdd:cd14915    476 KAEahFSLVHYAGTVDYNIAGWLDKNKDPLNETVVGLYQKSGMKTLAFLFSGGQTA----EAEGGGGKKGG---KKKGSS 548
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  650 FRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYE 729
Cdd:cd14915    549 FQTVSALFRENLNKLMTNLRSTHPHFVRCLIPNETKTPGAMEHELVLHQLRCNGVLEGIRICRKGFPSRILYADFKQRYK 628
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|...
gi 1785379715  730 ILTPNAIPKG-FMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd14915    629 VLNASAIPEGqFIDSKKASEKLLGSIDIDHTQYKFGHTKVFFK 671
MYSc_Myo22 cd14883
class XXII myosin, motor domain; These myosins possess an extended neck with multiple IQ ...
100-771 0e+00

class XXII myosin, motor domain; These myosins possess an extended neck with multiple IQ motifs such as found in class V, VIII, XI, and XIII myosins. These myosins are defined by two tandem MyTH4 and FERM domains. The apicomplexan, but not diatom myosins contain 4-6 WD40 repeats near the end of the C-terminal tail which suggests a possible function of these myosins in signal transduction and transcriptional regulation. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276849 [Multi-domain]  Cd Length: 661  Bit Score: 655.16  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTGE 179
Cdd:cd14883      2 GINTNLKVRYKKDLIYTYTGSILVAVNPYKELPIYTQDIVKQYFGKRMGALPPHIFALAEAAYTNMQEDGKNQSVIISGE 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  180 SGAGKTENTKKVIQYLAHVASSHKgrkehtapgELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVGA 259
Cdd:cd14883     82 SGAGKTETTKLILQYLCAVTNNHS---------WVEQQILEANTILEAFGNAKTVRNDNSSRFGKFIEVCFDASGHIKGA 152
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  260 NIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGE--HMKTDLLLEGFNQYRFLS-NGNLPIPGQQDREIFQETMESMKIM 336
Cdd:cd14883    153 IIQDYLLEQSRITFQAPGERNYHVFYQLLAGAKHskELKEKLKLGEPEDYHYLNqSGCIRIDNINDKKDFDHLRLAMNVL 232
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  337 GFNHEEIMSMLKMVSAVLQFGNIVFRK-ERNTDQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQTKE 415
Cdd:cd14883    233 GIPEEMQEGIFSVLSAILHLGNLTFEDiDGETGALTVEDKEILKIVAKLLGVDPDKLKKALTIRQINVRGNVTEIPLKVQ 312
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  416 QADFAVEALAKALYERLFRWLVHRINKALDRTKRQGaSFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFVLE 495
Cdd:cd14883    313 EARDNRDAMAKALYSRTFAWLVNHINSCTNPGQKNS-RFIGVLDIFGFENFKVNSFEQLCINYTNEKLHKFFNHYVFKLE 391
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  496 QEEYQREGIEWNFIDFGlDLQPCIDLIERPanPPGVLSLLDEECWFPKATDKSFVEKVIQELGNHPKFQKPRQLRDKADL 575
Cdd:cd14883    392 QEEYEKEGINWSHIVFT-DNQECLDLIEKP--PLGILKLLDEECRFPKGTDLTYLEKLHAAHEKHPYYEKPDRRRWKTEF 468
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  576 CIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVDrIVGLDQVSGMGEMSfGSSYKTKKGMfRTVGQ 655
Cdd:cd14883    469 GVKHYAGEVTYTVQGFLDKNKDTQQDDLFDLMSRSKNKFVKELFTYPD-LLALTGLSISLGGD-TTSRGTSKGK-PTVGD 545
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  656 LYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNA 735
Cdd:cd14883    546 TFKHQLQSLVDVLSATQPWYVRCIKPNSLKEPNVFDDELVLAQLRYAGMLEIIRIRKEGFPIHLTFKEFVDRYLCLDPRA 625
                          650       660       670
                   ....*....|....*....|....*....|....*.
gi 1785379715  736 IPKGFMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd14883    626 RSADHKETCGAVRALMGLGGLPEDEWQVGKTKVFLR 661
MYSc_Myo8 cd01383
class VIII myosin, motor domain; These plant-specific type VIII myosins has been associated ...
100-771 0e+00

class VIII myosin, motor domain; These plant-specific type VIII myosins has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. It also contains IQ domains Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276834  Cd Length: 647  Bit Score: 648.61  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRgkKRHEIPPHIYAISETAYRSMLQDREDQSILCTGE 179
Cdd:cd01383      2 SVLHNLEYRYSQDIIYTKAGPVLIAVNPFKDVPLYGNEFITAYR--QKLLDSPHVYAVADTAYREMMRDEINQSIIISGE 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  180 SGAGKTENTKKVIQYLAHVASSHKGrkehtapgeLEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVGA 259
Cdd:cd01383     80 SGAGKTETAKIAMQYLAALGGGSSG---------IENEILQTNPILEAFGNAKTLRNDNSSRFGKLIDIHFDAAGKICGA 150
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  260 NIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGN-LPIPGQQDREIFQETMESMKIMGF 338
Cdd:cd01383    151 KIQTYLLEKSRVVQLANGERSYHIFYQLCAGASPALREKLNLKSASEYKYLNQSNcLTIDGVDDAKKFHELKEALDTVGI 230
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  339 NHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQTKEQAD 418
Cdd:cd01383    231 SKEDQEHIFQMLAAVLWLGNISFQVIDNENHVEVVADEAVSTAASLLGCNANDLMLALSTRKIQAGGDKIVKKLTLQQAI 310
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  419 FAVEALAKALYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFVLEQEE 498
Cdd:cd01383    311 DARDALAKAIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFQKNSFEQLCINYANERLQQHFNRHLFKLEQEE 390
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  499 YQREGIEWNFIDFgLDLQPCIDLIERpaNPPGVLSLLDEECWFPKATDKSFVEKVIQELGNHPKFQKPrqlRDKAdLCII 578
Cdd:cd01383    391 YELDGIDWTKVDF-EDNQECLDLIEK--KPLGLISLLDEESNFPKATDLTFANKLKQHLKSNSCFKGE---RGGA-FTIR 463
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  579 HYAGKVDYKADEWLMKNMDPLNDNVATLLhQSTDKYTAELWKDVDRIVGLDQVSGMGEMSFGSsyktkkgMFRTVGQLYK 658
Cdd:cd01383    464 HYAGEVTYDTSGFLEKNRDLLHSDLIQLL-SSCSCQLPQLFASKMLDASRKALPLTKASGSDS-------QKQSVATKFK 535
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  659 ESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIpK 738
Cdd:cd01383    536 GQLFKLMQRLENTTPHFIRCIKPNNKQLPGVFDQDLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLPEDV-S 614
                          650       660       670
                   ....*....|....*....|....*....|...
gi 1785379715  739 GFMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd01383    615 ASQDPLSTSVAILQQFNILPEMYQVGYTKLFFR 647
MYSc_Myo1 cd01378
class I myosin, motor domain; Myosin I generates movement at the leading edge in cell motility, ...
100-771 0e+00

class I myosin, motor domain; Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. There are 5 myosin subclasses with subclasses c/h, d/g, and a/b have an IQ domain and a TH1 domain. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276829  Cd Length: 652  Bit Score: 644.60  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTGE 179
Cdd:cd01378      2 AINENLKKRFENDEIYTYIGHVLISVNPFKDLGIYTDEVLESYRGKNRYEVPPHVFALADSAYRNMKSEKENQCVIISGE 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  180 SGAGKTENTKKVIQYLAHVASSHKGRKEHTapgelEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVGA 259
Cdd:cd01378     82 SGAGKTEASKRIMQYIAAVSGGSESEVERV-----KDMLLASNPLLEAFGNAKTLRNDNSSRFGKYMEIQFDFKGEPVGG 156
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  260 NIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGN-LPIPGQQDREIFQETMESMKIMGF 338
Cdd:cd01378    157 HITNYLLEKSRVVGQIKGERNFHIFYQLLKGASQEYLQELGLQRPEQYYYYSKSGcFDVDGIDDAADFKEVLNAMKVIGF 236
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  339 NHEEIMSMLKMVSAVLQFGNIVFrKERNTDQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVG---RDYVQKAQTKE 415
Cdd:cd01378    237 TEEEQDSIFRILAAILHLGNIQF-AEDEEGNAAISDTSVLDFVAYLLGVDPDQLEKALTHRTIETGgggRSVYEVPLNVE 315
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  416 QADFAVEALAKALYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFnhTMFVL- 494
Cdd:cd01378    316 QAAYARDALAKAIYSRLFDWIVERINKSLAAKSGGKKKVIGVLDIYGFEIFEKNSFEQFCINYVNEKLQQIF--IELTLk 393
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  495 -EQEEYQREGIEWNFIDFgLDLQPCIDLIErpANPPGVLSLLDEECWFP-KATDKSFVEKVIQELGNHPKFQKPRQLRDK 572
Cdd:cd01378    394 aEQEEYVREGIEWTPIKY-FNNKIICDLIE--EKPPGIFAILDDACLTAgDATDQTFLQKLNQLFSNHPHFECPSGHFEL 470
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  573 ADLC--IIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVDRivgldqvsgmgemsfgssyKTKKGMF 650
Cdd:cd01378    471 RRGEfrIKHYAGDVTYNVEGFLDKNKDLLFKDLKELMQSSSNPFLRSLFPEGVD-------------------LDSKKRP 531
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  651 RTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEI 730
Cdd:cd01378    532 PTAGTKFKNSANALVETLMKKQPSYIRCIKPNDNKSPGEFDEELVLHQVKYLGLLENVRVRRAGFAYRQTYEKFLERYKL 611
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|.
gi 1785379715  731 LTPNAIPKGFMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd01378    612 LSPKTWPAWDGTWQGGVESILKDLNIPPEEYQMGKTKIFIR 652
MYSc_Myo7 cd01381
class VII myosin, motor domain; These monomeric myosins have been associated with functions in ...
99-771 0e+00

class VII myosin, motor domain; These monomeric myosins have been associated with functions in sensory systems such as vision and hearing. Mammalian myosin VII has a tail with 2 MyTH4 domains, 2 FERM domains, and a SH3 domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276832  Cd Length: 648  Bit Score: 614.26  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTG 178
Cdd:cd01381      1 AGILRNLLIRYREKLIYTYTGSILVAVNPYQILPIYTAEQIRLYRNKKIGELPPHIFAIADNAYTNMKRNKRDQCVVISG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  179 ESGAGKTENTKKVIQYLAHVASSHKgrkehtapgELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVG 258
Cdd:cd01381     81 ESGAGKTESTKLILQYLAAISGQHS---------WIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNKNGVIEG 151
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  259 ANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGN-LPIPGQQDREIFQETMESMKIMG 337
Cdd:cd01381    152 AKIEQYLLEKSRIVSQAPDERNYHIFYCMLAGLSAEEKKKLELGDASDYYYLTQGNcLTCEGRDDAAEFADIRSAMKVLM 231
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  338 FNHEEIMSMLKMVSAVLQFGNIVFRK--ERNTDQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQTKE 415
Cdd:cd01381    232 FTDEEIWDIFKLLAAILHLGNIKFEAtvVDNLDASEVRDPPNLERAAKLLEVPKQDLVDALTTRTIFTRGETVVSPLSAE 311
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  416 QADFAVEALAKALYERLFRWLVHRINKALDRTKRQGAS--FIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFV 493
Cdd:cd01381    312 QALDVRDAFVKGIYGRLFIWIVNKINSAIYKPRGTDSSrtSIGVLDIFGFENFEVNSFEQLCINFANENLQQFFVRHIFK 391
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  494 LEQEEYQREGIEWNFIDFgLDLQPCIDLI-ERPANppgVLSLLDEECWFPKATDKSFVEKVIQELGNHPKFQKPRQLRDK 572
Cdd:cd01381    392 LEQEEYDKEGINWQHIEF-VDNQDVLDLIaLKPMN---IMSLIDEESKFPKGTDQTMLEKLHSTHGNNKNYLKPKSDLNT 467
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  573 AdLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDvdrivgldqvsgmgEMSFGSSYKTKKgmfRT 652
Cdd:cd01381    468 S-FGINHFAGVVFYDTRGFLEKNRDTFSADLLQLVQSSKNKFLKQLFNE--------------DISMGSETRKKS---PT 529
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  653 VGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILT 732
Cdd:cd01381    530 LSSQFRKSLDQLMKTLSACQPFFVRCIKPNEYKKPMLFDRELCVRQLRYSGMMETIRIRKAGYPIRHTFEEFVERYRVLV 609
                          650       660       670
                   ....*....|....*....|....*....|....*....
gi 1785379715  733 PNAIPKGFMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd01381    610 PGIPPAHKTDCRAATRKICCAVLGGDADYQLGKTKIFLK 648
MYSc_Myo11 cd01384
class XI myosin, motor domain; These plant-specific type XI myosin are involved in organelle ...
99-771 0e+00

class XI myosin, motor domain; These plant-specific type XI myosin are involved in organelle transport. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle.


Pssm-ID: 276835  Cd Length: 647  Bit Score: 613.14  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCT 177
Cdd:cd01384      1 PGVLHNLKVRYELDEIYTYTGNILIAVNPFKRLPhLYDAHMMEQYKGAPLGELSPHVFAVADAAYRAMINEGKSQSILVS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  178 GESGAGKTENTKKVIQYLAHVAsshkGRKE-HTAPgeLEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYI 256
Cdd:cd01384     81 GESGAGKTETTKMLMQYLAYMG----GRAVtEGRS--VEQQVLESNPLLEAFGNAKTVRNNNSSRFGKFVEIQFDDAGRI 154
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  257 VGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGN-LPIPGQQDREIFQETMESMKI 335
Cdd:cd01384    155 SGAAIRTYLLERSRVVQVSDPERNYHCFYQLCAGAPPEDREKYKLKDPKQFHYLNQSKcFELDGVDDAEEYRATRRAMDV 234
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  336 MGFNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKL---CHLLGLNVTEFSRAiLMPRIKVGRD-YVQKA 411
Cdd:cd01384    235 VGISEEEQDAIFRVVAAILHLGNIEFSKGEEDDSSVPKDEKSEFHLkaaAELLMCDEKALEDA-LCKRVIVTPDgIITKP 313
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  412 QTKEQADFAVEALAKALYERLFRWLVHRINKALDRTKRQgASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTM 491
Cdd:cd01384    314 LDPDAATLSRDALAKTIYSRLFDWLVDKINRSIGQDPNS-KRLIGVLDIYGFESFKTNSFEQFCINLANEKLQQHFNQHV 392
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  492 FVLEQEEYQREGIEWNFIDFgLDLQPCIDLIERpaNPPGVLSLLDEECWFPKATDKSFVEKVIQELGNHPKFQKPRqlRD 571
Cdd:cd01384    393 FKMEQEEYTKEEIDWSYIEF-VDNQDVLDLIEK--KPGGIIALLDEACMFPRSTHETFAQKLYQTLKDHKRFSKPK--LS 467
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  572 KADLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVDRivgldqvsgmGEMSfgSSYKtkkgmFR 651
Cdd:cd01384    468 RTDFTIDHYAGDVTYQTDLFLDKNKDYVVAEHQALLNASKCPFVAGLFPPLPR----------EGTS--SSSK-----FS 530
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  652 TVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEIL 731
Cdd:cd01384    531 SIGSRFKQQLQELMETLNTTEPHYIRCIKPNNLLKPGIFENANVLQQLRCGGVLEAVRISCAGYPTRKPFEEFLDRFGLL 610
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|
gi 1785379715  732 TPNAiPKGFMDGKQACAIMIRALELDPnlYRIGQSKIFFR 771
Cdd:cd01384    611 APEV-LKGSDDEKAACKKILEKAGLKG--YQIGKTKVFLR 647
MYSc_Myo6 cd01382
class VI myosin, motor domain; Myosin VI is a monomeric myosin, which moves towards the ...
99-771 0e+00

class VI myosin, motor domain; Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins which moves towards the plus-end of actin filaments. It is thought that myosin VI, unlike plus-end directed myosins, does not use a pure lever arm mechanism, but instead steps with a mechanism analogous to the kinesin neck-linker uncoupling model. It has been implicated in a myriad of functions including: the transport of cytoplasmic organelles, maintenance of normal Golgi morphology, endocytosis, secretion, cell migration, border cell migration during development, and in cancer metastasis playing roles in deafness and retinal development among others. While how this is accomplished is largely unknown there are several interacting proteins that have been identified such as disabled homolog 2 (DAB2), GIPC1, synapse-associated protein 97 (SAP97; also known as DLG1) and optineurin, which have been found to target myosin VI to different cellular compartments. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276833  Cd Length: 649  Bit Score: 574.97  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCT 177
Cdd:cd01382      1 ATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPkLYSSETIKSYQGKSLGTLPPHVFAIADKAYRDMKVLKQSQSIIVS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  178 GESGAGKTENTKKVIQYLAHVASSHKGrkehtapgELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIV 257
Cdd:cd01382     81 GESGAGKTESTKYILRYLTESWGSGAG--------PIEQRILEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVV 152
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  258 GANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLegfnqyrflsngnlpIPGQQDREIFQETMESMKIMG 337
Cdd:cd01382    153 GGFVSHYLLEKSRICVQSKEERNYHIFYRLCAGAPEDLREKLLK---------------DPLLDDVGDFIRMDKAMKKIG 217
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  338 FNHEEIMSMLKMVSAVLQFGNIVFRKERNT-------DQASMPDNTAAQKlchLLGLNVTEF-----SRAILMPRIKVGR 405
Cdd:cd01382    218 LSDEEKLDIFRVVAAVLHLGNIEFEENGSDsgggcnvKPKSEQSLEYAAE---LLGLDQDELrvsltTRVMQTTRGGAKG 294
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  406 DYVQKAQTKEQADFAVEALAKALYERLFRWLVHRINKALDRTKrqGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQ 485
Cdd:cd01382    295 TVIKVPLKVEEANNARDALAKAIYSKLFDHIVNRINQCIPFET--SSYFIGVLDIAGFEYFEVNSFEQFCINYCNEKLQQ 372
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  486 LFNHTMFVLEQEEYQREGIEWNFIDFgLDLQPCIDLIERPANppGVLSLLDEECWFPKATDKSFVEKVIQELGNHPKFQK 565
Cdd:cd01382    373 FFNERILKEEQELYEKEGLGVKEVEY-VDNQDCIDLIEAKLV--GILDLLDEESKLPKPSDQHFTSAVHQKHKNHFRLSI 449
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  566 PRQ--------LRDKADLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVDRIVGldqvsgmgem 637
Cdd:cd01382    450 PRKsklkihrnLRDDEGFLIRHFAGAVCYETAQFIEKNNDALHASLESLICESKDKFIRSLFESSTNNNK---------- 519
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  638 sfGSSYKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPN 717
Cdd:cd01382    520 --DSKQKAGKLSFISVGNKFKTQLNLLMDKLRSTGTSFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPS 597
                          650       660       670       680       690
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1785379715  718 RIVFQEFRQRYEILTPNAIPKgfMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd01382    598 RTSFHDLYNMYKKYLPPKLAR--LDPRLFCKALFKALGLNENDFKFGLTKVFFR 649
MYSc_Myo4 cd14872
class IV myosin, motor domain; These myosins all possess a WW domain either N-terminal or ...
99-771 1.01e-179

class IV myosin, motor domain; These myosins all possess a WW domain either N-terminal or C-terminal to their motor domain and a tail with a MyTH4 domain followed by a SH3 domain in some instances. The monomeric Acanthamoebas were the first identified members of this group and have been joined by Stramenopiles. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276839  Cd Length: 644  Bit Score: 559.78  E-value: 1.01e-179
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTG 178
Cdd:cd14872      1 AMIVHNLRKRFKNDQIYTNVGTILISVNPFKRLPLYTPTVMDQYMHKGPKEMPPHTYNIADDAYRAMIVDAMNQSILISG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  179 ESGAGKTENTKKVIQYLAHVASSHKGrkehtapgeLEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVG 258
Cdd:cd14872     81 ESGAGKTEATKQCLSFFAEVAGSTNG---------VEQRVLLANPILEAFGNAKTLRNNNSSRFGKWVEIHFDNRGRICG 151
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  259 ANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGfnQYRFLSNGN-LPIPGQQDREIFQETMESMKIMG 337
Cdd:cd14872    152 ASTENYLLEKSRVVYQIKGERNFHIFYQLLASPDPASRGGWGSSA--AYGYLSLSGcIEVEGVDDVADFEEVVLAMEQLG 229
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  338 FNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCH---LLGLNVTEFSRAILMPRIKV-GRDYVQKAQT 413
Cdd:cd14872    230 FDDADINNVMSLIAAILKLGNIEFASGGGKSLVSGSTVANRDVLKEvatLLGVDAATLEEALTSRLMEIkGCDPTRIPLT 309
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  414 KEQADFAVEALAKALYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFV 493
Cdd:cd14872    310 PAQATDACDALAKAAYSRLFDWLVKKINESMRPQKGAKTTFIGVLDIFGFEIFEKNSFEQLCINFTNEKLQQHFNQYTFK 389
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  494 LEQEEYQREGIEWNFIDFgLDLQPCIDLIERpaNPPGVLSLLDEECWFPKATDKSFVEKVIQELGNHPKFQKPRQLRDKA 573
Cdd:cd14872    390 LEEALYQSEGVKFEHIDF-IDNQPVLDLIEK--KQPGLMLALDDQVKIPKGSDATFMIAANQTHAAKSTFVYAEVRTSRT 466
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  574 DLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWkdvdrivgldqvsgmgEMSFGSSyKTKKGmfrTV 653
Cdd:cd14872    467 EFIVKHYAGDVTYDITGFLEKNKDTLQKDLYVLLSSSKNKLIAVLF----------------PPSEGDQ-KTSKV---TL 526
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  654 GQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILtP 733
Cdd:cd14872    527 GGQFRKQLSALMTALNATEPHYIRCVKPNQEKRARLFDGFMSLEQLRYAGVFEAVKIRKTGYPFRYSHERFLKRYRFL-V 605
                          650       660       670
                   ....*....|....*....|....*....|....*....
gi 1785379715  734 NAIPKGFM-DGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd14872    606 KTIAKRVGpDDRQRCDLLLKSLKQDFSKVQVGKTRVLYR 644
MYSc_Myo29 cd14890
class XXIX myosin, motor domain; Class XXIX myosins are comprised of Stramenopiles and have ...
99-771 1.14e-176

class XXIX myosin, motor domain; Class XXIX myosins are comprised of Stramenopiles and have very long tail domains consisting of three IQ motifs, short coiled-coil regions, up to 18 CBS domains, a PB1 domain, and a carboxy-terminal transmembrane domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276855 [Multi-domain]  Cd Length: 662  Bit Score: 552.46  E-value: 1.14e-176
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQ----DREDQS 173
Cdd:cd14890      1 ASLLHTLRLRYERDEIYTYVGPILISINPYKSIPdLYSEERMLLYHGTTAGELPPHVFAIADHAYTQLIQsgvlDPSNQS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  174 ILCTGESGAGKTENTKKVIQYLAHVASSHKGRKEH----------TAPGELEHQLLQANPILEAFGNAKTVKNDNSSRFG 243
Cdd:cd14890     81 IIISGESGAGKTEATKIIMQYLARITSGFAQGASGegeaaseaieQTLGSLEDRVLSSNPLLESFGNAKTLRNDNSSRFG 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  244 KFIRINFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGNLPIPGQQDR 323
Cdd:cd14890    161 KFIEIQFDHHGKIVGAEISNFLLEKTRIVTQNDGERNYHIFYQLLAGADEALRERLKLQTPVEYFYLRGECSSIPSCDDA 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  324 EIFQETMESMKIMGFNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASmpDNTAAQKLCH---LLGLNVTEFSRAILMPR 400
Cdd:cd14890    241 KAFAETIRCLSTIGISEENQDAVFGLLAAVLHLGNVDFESENDTTVLE--DATTLQSLKLaaeLLGVNEDALEKALLTRQ 318
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  401 IKVGRDYVQKAQTKEQADFAVEALAKALYERLFRWLVHRINKALDRTKRQgASFIGILDIAGFEIFELNSFEQLCINYTN 480
Cdd:cd14890    319 LFVGGKTIVQPQNVEQARDKRDALAKALYSSLFLWLVSELNRTISSPDDK-WGFIGVLDIYGFEKFEWNTFEQLCINYAN 397
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  481 EKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIE-RPANPPGVLSLLDeECWFPKAT--DKSFVEKVIQEL 557
Cdd:cd14890    398 EKLQRHFNQHMFEVEQVEYSNEGIDWQYITFN-DNQACLELIEgKVNGKPGIFITLD-DCWRFKGEeaNKKFVSQLHASF 475
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  558 G-------------NHPKFQKPRQLRDKAdLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTdkytaelwkdvdr 624
Cdd:cd14890    476 GrksgsggtrrgssQHPHFVHPKFDADKQ-FGIKHYAGDVIYDASGFNEKNNETLNAEMKELIKQSR------------- 541
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  625 ivgldqvSGMGEMSFGSSYKTkkgmfrtvgqlykeSLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGV 704
Cdd:cd14890    542 -------RSIREVSVGAQFRT--------------QLQELMAKISLTNPRYVRCIKPNETKAPGKFDGLDCLRQLKYSGM 600
                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1785379715  705 LEGIRICRQGFPNRIVFQEFRQRYEILTPNAipkgfMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd14890    601 MEAIQIRQQGFALREEHDSFFYDFQVLLPTA-----ENIEQLVAVLSKMLGLGKADWQIGSSKIFLK 662
MYSc_Myo15 cd01387
class XV mammal-like myosin, motor domain; The class XV myosins are monomeric. In vertebrates, ...
99-771 8.05e-174

class XV mammal-like myosin, motor domain; The class XV myosins are monomeric. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. C-terminal to the head domain are 2 MyTH4 domain, a FERM domain, and a SH3 domain. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276838 [Multi-domain]  Cd Length: 657  Bit Score: 544.35  E-value: 8.05e-174
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTG 178
Cdd:cd01387      1 TTVLWNLKTRYERNLIYTYIGSILVSVNPYKMFDIYGLEQVQQYSGRALGELPPHLFAIANLAFAKMLDAKQNQCVVISG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  179 ESGAGKTENTKKVIQYLAHVASShkgrkehtAPGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDvAGYIVG 258
Cdd:cd01387     81 ESGSGKTEATKLIMQYLAAVNQR--------RNNLVTEQILEATPLLEAFGNAKTVRNDNSSRFGKYLEVFFE-GGVIVG 151
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  259 ANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNG-NLPIPGQQDREIFQETMESMKIMG 337
Cdd:cd01387    152 AITSQYLLEKSRIVTQAKNERNYHVFYELLAGLPAQLRQKYGLQEAEKYFYLNQGgNCEIAGKSDADDFRRLLAAMQVLG 231
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  338 FNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQ---ASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQTK 414
Cdd:cd01387    232 FSSEEQDSIFRILASVLHLGNVYFHKRQLRHGqegVSVGSDAEIQWVAHLLQISPEGLQKALTFKVTETRRERIFTPLTI 311
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  415 EQADFAVEALAKALYERLFRWLVHRINkALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFVL 494
Cdd:cd01387    312 DQALDARDAIAKALYALLFSWLVTRVN-AIVYSGTQDTLSIAILDIFGFEDLSENSFEQLCINYANENLQYYFNKHVFKL 390
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  495 EQEEYQREGIEWNFIDFgLDLQPCIDLIERpaNPPGVLSLLDEECWFPKATDKSFVEKVIQELGNHPKFQKPRQlrDKAD 574
Cdd:cd01387    391 EQEEYIREQIDWTEIAF-ADNQPVINLISK--KPVGILHILDDECNFPQATDHSFLEKCHYHHALNELYSKPRM--PLPE 465
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  575 LCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVdrivgLDQVSGMGEMSFGSSYKTKKGMFRTVG 654
Cdd:cd01387    466 FTIKHYAGQVWYQVHGFLDKNRDQLRQDVLELLVSSRTRVVAHLFSSH-----RAQTDKAPPRLGKGRFVTMKPRTPTVA 540
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  655 QLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPN 734
Cdd:cd01387    541 ARFQDSLLQLLEKMERCNPWFVRCLKPNHKKEPMLFDMDVVMAQLRYSGMLETIRIRKEGYPVRLPFQVFIDRYRCLVAL 620
                          650       660       670
                   ....*....|....*....|....*....|....*...
gi 1785379715  735 AIPKGfMDGKQACAIMIRALELDP-NLYRIGQSKIFFR 771
Cdd:cd01387    621 KLPRP-APGDMCVSLLSRLCTVTPkDMYRLGATKVFLR 657
MYSc_Myo42 cd14903
class XLII myosin, motor domain; The class XLII myosins are comprised of Stramenopiles. Not ...
99-771 2.95e-168

class XLII myosin, motor domain; The class XLII myosins are comprised of Stramenopiles. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276868 [Multi-domain]  Cd Length: 658  Bit Score: 529.35  E-value: 2.95e-168
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCT 177
Cdd:cd14903      1 AAILYNVKKRFLRKLPYTYTGDICIAVNPYQWLPeLYTEEQHSKYLNKPKEELPPHVYATSVAAYNHMKRSGRNQSILVS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  178 GESGAGKTENTKKVIQYLAHVAsshkgrkehtapGELEH----QLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVA 253
Cdd:cd14903     81 GESGAGKTETTKILMNHLATIA------------GGLNDstikKIIEVNPLLESFGNAKTVRNDNSSRFGKFTQLQFDKN 148
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  254 GYIVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAgeHMKTDLLLEGFNQYRFL-SNGNLPIPGQQDREIFQETMES 332
Cdd:cd14903    149 GTLVGAKCRTYLLEKTRVISHERPERNYHIFYQLLASP--DVEERLFLDSANECAYTgANKTIKIEGMSDRKHFARTKEA 226
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  333 MKIMGFNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASM--PDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQK 410
Cdd:cd14903    227 LSLIGVSEEKQEVLFEVLAGILHLGQLQIQSKPNDDEKSAiaPGDQGAVYATKLLGLSPEALEKALCSRTMRAAGDVYTV 306
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  411 AQTKEQADFAVEALAKALYERLFRWLVHRINKALDRTKRQgASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHT 490
Cdd:cd14903    307 PLKKDQAEDCRDALAKAIYSNVFDWLVATINASLGNDAKM-ANHIGVLDIFGFEHFKHNSFEQFCINYANEKLQQKFTQD 385
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  491 MFVLEQEEYQREGIEWNFIDFgLDLQPCIDLIErpaNPPGVLSLLDEECWFPKATDKSFVEKVIqelGNHPKFQK----P 566
Cdd:cd14903    386 VFKTVQIEYEEEGIRWAHIDF-ADNQDVLAVIE---DRLGIISLLNDEVMRPKGNEESFVSKLS---SIHKDEQDviefP 458
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  567 RQlrDKADLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDvdrIVGLDQVSGMGEMSFGSSYKTK 646
Cdd:cd14903    459 RT--SRTQFTIKHYAGPVTYESLGFLEKHKDALLPDLSDLMRGSSKPFLRMLFKE---KVESPAAASTSLARGARRRRGG 533
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  647 KGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQ 726
Cdd:cd14903    534 ALTTTTVGTQFKDSLNELMTTIRSTNVHYVRCIKPNSIKSPTELDHLMVVSQLRCAGVIEAIRISRAAYPNRLLHEEFLD 613
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|....*.
gi 1785379715  727 RYEILTPNAiPKGFMDGKQACAIMIRALELD-PNLYRIGQSKIFFR 771
Cdd:cd14903    614 KFWLFLPEG-RNTDVPVAERCEALMKKLKLEsPEQYQMGLTRIYFQ 658
MYSc_Myo9 cd01385
class IX myosin, motor domain; Myosin IX is a processive single-headed motor, which might play ...
99-771 1.42e-167

class IX myosin, motor domain; Myosin IX is a processive single-headed motor, which might play a role in signalling. It has a N-terminal RA domain, an IQ domain, a C1_1 domain, and a RhoGAP domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276836 [Multi-domain]  Cd Length: 690  Bit Score: 528.87  E-value: 1.42e-167
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTG 178
Cdd:cd01385      1 QTLLENLRARFKHGKIYTYVGSILIAVNPFKFLPIYNPKYVKMYQNRRLGKLPPHIFAIADVAYHAMLRKKKNQCIVISG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  179 ESGAGKTENTKKVIQYLahVASSHKGrkehTAPGeLEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVG 258
Cdd:cd01385     81 ESGSGKTESTNFLLHHL--TALSQKG----YGSG-VEQTILGAGPVLEAFGNAKTAHNNNSSRFGKFIQVNYRENGMVRG 153
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  259 ANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLS-NGNLPIPGQQDREIFQETMESMKIMG 337
Cdd:cd01385    154 AVVEKYLLEKSRIVSQEKNERNYHVFYYLLAGASEEERKELHLKQPEDYHYLNqSDCYTLEGEDEKYEFERLKQAMEMVG 233
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  338 FNHEEIMSMLKMVSAVLQFGNIVFRKER-NTDQASMPDNTAAQKL-CHLLGLNVTEFSRAILMPRIKVGRDYVQKAQTKE 415
Cdd:cd01385    234 FLPETQRQIFSVLSAVLHLGNIEYKKKAyHRDESVTVGNPEVLDIiSELLRVKEETLLEALTTKKTVTVGETLILPYKLP 313
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  416 QADFAVEALAKALYERLFRWLVHRINKAL----DRTKRQGASfIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTM 491
Cdd:cd01385    314 EAIATRDAMAKCLYSALFDWIVLRINHALlnkkDLEEAKGLS-IGVLDIFGFEDFGNNSFEQFCINYANEHLQYYFNQHI 392
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  492 FVLEQEEYQREGIEWNFIDFgLDLQPCIDLIERpaNPPGVLSLLDEECWFPKATDKSFVEKVIQELGNHPKFQKPrQLRD 571
Cdd:cd01385    393 FKLEQEEYKKEGISWHNIEY-TDNTGCLQLISK--KPTGLLCLLDEESNFPGATNQTLLAKFKQQHKDNKYYEKP-QVME 468
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  572 KAdLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELwkdvdriVGLDQV-------------------- 631
Cdd:cd01385    469 PA-FIIAHYAGKVKYQIKDFREKNLDLMRPDIVAVLRSSSSAFVREL-------IGIDPVavfrwavlrafframaafre 540
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  632 SGM----------------GEMSFGSSYKTKKGMfrTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLV 695
Cdd:cd01385    541 AGRrraqrtaghsltlhdrTTKSLLHLHKKKKPP--SVSAQFQTSLSKLMETLGQAEPFFIRCIKSNAEKKPLRFDDELV 618
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1785379715  696 LDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILtpnaIPKGFMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd01385    619 LRQLRYTGMLETVRIRRSGYSVRYTFQEFITQFQVL----LPKGLISSKEDIKDFLEKLNLDRDNYQIGKTKVFLK 690
MYSc_Myo40 cd14901
class XL myosin, motor domain; The class XL myosins are comprised of Stramenopiles. Not much ...
99-769 1.94e-165

class XL myosin, motor domain; The class XL myosins are comprised of Stramenopiles. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276866 [Multi-domain]  Cd Length: 655  Bit Score: 521.66  E-value: 1.94e-165
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMY------RGKKRHEIPPHIYAISETAYRSMLQDRE-- 170
Cdd:cd14901      1 PSILHVLRRRFAHGLIYTSTGAILVAINPFRRLPLYDDETKEAYyehgerRAAGERKLPPHVYAVADKAFRAMLFASRgq 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  171 --DQSILCTGESGAGKTENTKKVIQYLAHVASSHKGRKEHTAPGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRI 248
Cdd:cd14901     81 kcDQSILVSGESGAGKTETTKIIMNYLASVSSATTHGQNATERENVRDRVLESNPILEAFGNARTNRNNNSSRFGKFIRL 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  249 NFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGNLPI--PGQQDREIF 326
Cdd:cd14901    161 GFASSGSLLGASISTYLLERVRLVSQAKGERNYHIFYELLRGASSDELHALGLTHVEEYKYLNSSQCYDrrDGVDDSVQY 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  327 QETMESMKIMGFNHEEIMSMLKMVSAVLQFGNIVF-RKERNTDQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGR 405
Cdd:cd14901    241 AKTRHAMTTIGMSPDEQISVLQLVAAVLHLGNLCFvKKDGEGGTFSMSSLANVRAACDLLGLDMDVLEKTLCTREIRAGG 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  406 DYVQKAQTKEQADFAVEALAKALYERLFRWLVHRINKALDRTKRQGAS-FIGILDIAGFEIFELNSFEQLCINYTNEKLQ 484
Cdd:cd14901    321 EYITMPLSVEQALLTRDVVAKTLYAQLFDWLVDRINESIAYSESTGASrFIGIVDIFGFEIFATNSLEQLCINFANEKLQ 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  485 QLFNHTMFVLEQEEYQREGIEWNFIDFgldlqP----CIDLIErpANPPGVLSLLDEECWFPKATDKSFVEKVIQELGNH 560
Cdd:cd14901    401 QLFGKFVFEMEQDEYVAEAIPWTFVEY-----PnndaCVAMFE--ARPTGLFSLLDEQCLLPRGNDEKLANKYYDLLAKH 473
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  561 PKFQKPRQLRDKADLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAElwkdvdrivgldqvsgmgemsfg 640
Cdd:cd14901    474 ASFSVSKLQQGKRQFVIHHYAGAVCYATDGFCDKNKDHVHSEALALLRTSSNAFLSS----------------------- 530
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  641 ssyktkkgmfrTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIV 720
Cdd:cd14901    531 -----------TVVAKFKVQLSSLLEVLNATEPHFIRCIKPNDVLSPSEFDAKRVLEQLRCSGVLEAVKISRSGYPVRFP 599
                          650       660       670       680       690
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1785379715  721 FQEFRQRYEILTPNAIPKGFMDGKQACAIMIRA------LELDPNLYrIGQSKIF 769
Cdd:cd14901    600 HDAFVHTYSCLAPDGASDTWKVNELAERLMSQLqhselnIEHLPPFQ-VGKTKVF 653
MYSc_Myo36 cd14897
class XXXVI myosin, motor domain; This class of molluscan myosins contains a motor domain ...
99-771 1.32e-163

class XXXVI myosin, motor domain; This class of molluscan myosins contains a motor domain followed by a GlcAT-I (Beta1,3-glucuronyltransferase I) domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276862 [Multi-domain]  Cd Length: 635  Bit Score: 515.78  E-value: 1.32e-163
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKK-RHEIPPHIYAISETAYRSMLQDREDQSILCT 177
Cdd:cd14897      1 NTIVQTLKSRYNKDKFYTYIGDILVAVNPCKPLPIFDKKHHEEYSNLSvRSQRPPHLFWIADQAYRRLLETGRNQCILVS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  178 GESGAGKTENTKKVIQYLAHVASShkgrkehtAPGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIV 257
Cdd:cd14897     81 GESGAGKTESTKYMIKHLMKLSPS--------DDSDLLDKIVQINPLLEAFGNASTVMNDNSSRFGKFIELHFTENGQLL 152
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  258 GANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGNLPIPGQQD-------REIFQETM 330
Cdd:cd14897    153 GAKIDDYLLEKSRVVHRGNGEKNFHIFYALFAGMSRDRLLYYFLEDPDCHRILRDDNRNRPVFNDseeleyyRQMFHDLT 232
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  331 ESMKIMGFNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQK 410
Cdd:cd14897    233 NIMKLIGFSEEDISVIFTILAAILHLTNIVFIPDEDTDGVTVADEYPLHAVAKLLGIDEVELTEALISNVNTIRGERIQS 312
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  411 AQTKEQADFAVEALAKALYERLFRWLVHRINKAL----DRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQL 486
Cdd:cd14897    313 WKSLRQANDSRDALAKDLYSRLFGWIVGQINRNLwpdkDFQIMTRGPSIGILDMSGFENFKINSFDQLCINLSNERLQQY 392
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  487 FNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIERpaNPPGVLSLLDEECWFPKATDKSFVEKVIQELGNHPKFQKP 566
Cdd:cd14897    393 FNDYVFPRERSEYEIEGIEWRDIEYH-DNDDVLELFFK--KPLGILPLLDEESTFPQSTDSSLVQKLNKYCGESPRYVAS 469
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  567 rqLRDKADLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWkdvdrivgldqvsgmgemsfgSSYktk 646
Cdd:cd14897    470 --PGNRVAFGIRHYAEQVTYDADGFLEKNRDNLSSDIVGCLLNSNNEFISDLF---------------------TSY--- 523
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  647 kgmfrtvgqlYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQ 726
Cdd:cd14897    524 ----------FKRSLSDLMTKLNSADPLFVRCIKPNNFLRPNKFDDELVRRQLLCNGLMEIAKIRRDGYPIRIKYEDFVK 593
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|....*
gi 1785379715  727 RYEILTPNAiPKGFMDGKQACAIMIRALELDPnlYRIGQSKIFFR 771
Cdd:cd14897    594 RYKEICDFS-NKVRSDDLGKCQKILKTAGIKG--YQFGKTKVFLK 635
MYSc_Myo27 cd14888
class XXVII myosin, motor domain; Not much is known about this myosin class. The catalytic ...
99-733 4.39e-163

class XXVII myosin, motor domain; Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276853 [Multi-domain]  Cd Length: 667  Bit Score: 515.78  E-value: 4.39e-163
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMYRgKKRHEIPPHIYAISETAYRSMLQDREDQSILCT 177
Cdd:cd14888      1 ASILHSLNLRFDIDEIYTFTGPILIAVNPFKTIPgLYSDEMLLKFI-QPSISKSPHVFSTASSAYQGMCNNKKSQTILIS 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  178 GESGAGKTENTKKVIQYLAHVASSHKGRKEhtapgELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFD------ 251
Cdd:cd14888     80 GESGAGKTESTKYVMKFLACAGSEDIKKRS-----LVEAQVLESNPLLEAFGNARTLRNDNSSRFGKFIELQFSklkskr 154
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  252 ---VAGYIVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGNLP------------ 316
Cdd:cd14888    155 msgDRGRLCGAKIQTYLLEKVRVCDQQEGERNYHIFYQLCAAAREAKNTGLSYEENDEKLAKGADAKPisidmssfephl 234
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  317 ------------IPGQQDREIFQETMESMKIMGFNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKL--- 381
Cdd:cd14888    235 kfryltksscheLPDVDDLEEFESTLYAMQTVGISPEEQNQIFSIVAAILYLGNILFENNEACSEGAVVSASCTDDLekv 314
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  382 CHLLGLNVTEFSRAILMPRIKVGRDYVQKAQTKEQADFAVEALAKALYERLFRWLVHRINKALDRTKRQGASFIGILDIA 461
Cdd:cd14888    315 ASLLGVDAEDLLNALCYRTIKTAHEFYTKPLRVDEAEDVRDALARALYSCLFDKVVERTNESIGYSKDNSLLFCGVLDIF 394
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  462 GFEIFELNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIErpANPPGVLSLLDEECWF 541
Cdd:cd14888    395 GFECFQLNSFEQLCINFTNERLQQFFNNFVFKCEEKLYIEEGISWNPLDFP-DNQDCVDLLQ--EKPLGIFCMLDEECFV 471
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  542 PKATDKSFVEKVIQELGNHPKFQKPRQlrDKADLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKD 621
Cdd:cd14888    472 PGGKDQGLCNKLCQKHKGHKRFDVVKT--DPNSFVIVHFAGPVKYCSDGFLEKNKDQLSVDAQEVIKNSKNPFISNLFSA 549
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  622 -VDRIVGLdqvsgmgemsfgssyKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLR 700
Cdd:cd14888    550 yLRRGTDG---------------NTKKKKFVTVSSEFRNQLDVLMETIDKTEPHFIRCIKPNSQNVPDLFDRISVNEQLK 614
                          650       660       670
                   ....*....|....*....|....*....|...
gi 1785379715  701 CNGVLEGIRICRQGFPNRIVFQEFRQRYEILTP 733
Cdd:cd14888    615 YGGVLQAVQVSRAGYPVRLSHAEFYNDYRILLN 647
MYSc_Myo3 cd01379
class III myosin, motor domain; Myosin III has been shown to play a role in the vision process ...
100-771 4.56e-163

class III myosin, motor domain; Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. They are characterized by an N-terminal protein kinase domain and several IQ domains. Some members also contain WW, SH2, PH, and Y-phosphatase domains. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276830 [Multi-domain]  Cd Length: 633  Bit Score: 514.13  E-value: 4.56e-163
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTGE 179
Cdd:cd01379      2 TIVSQLQKRYSRDQIYTYIGDILIAVNPFQNLGIYTEEHSRLYRGAKRSDNPPHIFAVADAAYQAMIHQKKNQCIVISGE 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  180 SGAGKTENTKKVIQYLAHVASShkgrkehtAPGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVGA 259
Cdd:cd01379     82 SGAGKTESANLLVQQLTVLGKA--------NNRTLEEKILQVNPLMEAFGNARTVINDNSSRFGKYLEMKFTSTGAVTGA 153
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  260 NIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTD---LLLEGFNQYRFLSNGNLPIPGQQD--REIFQETMESMK 334
Cdd:cd01379    154 RISEYLLEKSRVVHQAIGERNFHIFYYIYAGLAEDKKLAkykLPENKPPRYLQNDGLTVQDIVNNSgnREKFEEIEQCFK 233
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  335 IMGFNHEEIMSMLKMVSAVLQFGNIVFR---KERNTDQASM-PDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQK 410
Cdd:cd01379    234 VIGFTKEEVDSVYSILAAILHIGDIEFTeveSNHQTDKSSRiSNPEALNNVAKLLGIEADELQEALTSHSVVTRGETIIR 313
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  411 AQTKEQADFAVEALAKALYERLFRWLVHRINKAL--DRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFN 488
Cdd:cd01379    314 NNTVEEATDARDAMAKALYGRLFSWIVNRINSLLkpDRSASDEPLSIGILDIFGFENFQKNSFEQLCINIANEQIQYYFN 393
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  489 HTMFVLEQEEYQREGIEWNFIDFGlDLQPCID-LIERPAnppGVLSLLDEECWFPKATDKSFVEKVIQELGNHPkFQKPR 567
Cdd:cd01379    394 QHIFAWEQQEYLNEGIDVDLIEYE-DNRPLLDmFLQKPM---GLLALLDEESRFPKATDQTLVEKFHNNIKSKY-YWRPK 468
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  568 qlRDKADLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAElwkdvdrivgldqvsgmgemsfgssyktkk 647
Cdd:cd01379    469 --SNALSFGIHHYAGKVLYDASGFLEKNRDTLPPDVVQLLRSSENPLVRQ------------------------------ 516
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  648 gmfrTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQR 727
Cdd:cd01379    517 ----TVATYFRYSLMDLLSKMVVGQPHFVRCIKPNDSRQAGKFDREKVLKQLRYTGVLETTRIRRQGFSHRILFADFLKR 592
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|....
gi 1785379715  728 YEILTPNAIPKGFMDgKQACAIMIRALELDPnlYRIGQSKIFFR 771
Cdd:cd01379    593 YYFLAFKWNEEVVAN-RENCRLILERLKLDN--WALGKTKVFLK 633
MYSc_Myo10 cd14873
class X myosin, motor domain; Myosin X is an unconventional myosin motor that functions as a ...
99-771 1.18e-161

class X myosin, motor domain; Myosin X is an unconventional myosin motor that functions as a monomer. In mammalian cells, the motor is found to localize to filopodia. Myosin X walks towards the barbed ends of filaments and is thought to walk on bundles of actin, rather than single filaments, a unique behavior. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. C-terminal to the head domain are a variable number of IQ domains, 2 PH domains, a MyTH4 domain, and a FERM domain. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276840 [Multi-domain]  Cd Length: 651  Bit Score: 511.26  E-value: 1.18e-161
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCT 177
Cdd:cd14873      1 GSIMYNLFQRYKRNQIYTYIGSILASVNPYQPIAgLYEPATMEQYSRRHLGELPPHIFAIANECYRCLWKRHDNQCILIS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  178 GESGAGKTENTKKVIQYLAHVASSHKGRKEHTAPGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIV 257
Cdd:cd14873     81 GESGAGKTESTKLILKFLSVISQQSLELSLKEKTSCVEQAILESSPIMEAFGNAKTVYNNNSSRFGKFVQLNICQKGNIQ 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  258 GANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLS-NGNLPIPGQQDREIFQETMESMKIM 336
Cdd:cd14873    161 GGRIVDYLLEKNRVVRQNPGERNYHIFYALLAGLEHEEREEFYLSTPENYHYLNqSGCVEDKTISDQESFREVITAMEVM 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  337 GFNHEEIMSMLKMVSAVLQFGNIVFrkeRNTDQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQTKEQ 416
Cdd:cd14873    241 QFSKEEVREVSRLLAGILHLGNIEF---ITAGGAQVSFKTALGRSAELLGLDPTQLTDALTQRSMFLRGEEILTPLNVQQ 317
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  417 ADFAVEALAKALYERLFRWLVHRINKaldRTKRQGA-SFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFVLE 495
Cdd:cd14873    318 AVDSRDSLAMALYARCFEWVIKKINS---RIKGKEDfKSIGILDIFGFENFEVNHFEQFNINYANEKLQEYFNKHIFSLE 394
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  496 QEEYQREGIEWNFIDFgLDLQPCIDLIERPAnppGVLSLLDEECWFPKATDKSFVEKVIQELGNHPKFQKPRQLRDkaDL 575
Cdd:cd14873    395 QLEYSREGLVWEDIDW-IDNGECLDLIEKKL---GLLALINEESHFPQATDSTLLEKLHSQHANNHFYVKPRVAVN--NF 468
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  576 CIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVDrivgldqvSGMGEMSFGSSYKTKKgmfRTVGQ 655
Cdd:cd14873    469 GVKHYAGEVQYDVRGILEKNRDTFRDDLLNLLRESRFDFIYDLFEHVS--------SRNNQDTLKCGSKHRR---PTVSS 537
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  656 LYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNA 735
Cdd:cd14873    538 QFKDSLHSLMATLSSSNPFFVRCIKPNMQKMPDQFDQAVVLNQLRYSGMLETVRIRKAGYAVRRPFQDFYKRYKVLMRNL 617
                          650       660       670
                   ....*....|....*....|....*....|....*.
gi 1785379715  736 IPKGFMDGKqaCAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd14873    618 ALPEDVRGK--CTSLLQLYDASNSEWQLGKTKVFLR 651
MYSc_Myo31 cd14892
class XXXI myosin, motor domain; Class XXXI myosins have a very long neck region consisting of ...
99-771 2.85e-160

class XXXI myosin, motor domain; Class XXXI myosins have a very long neck region consisting of 17 IQ motifs and 2 tandem ANK repeats that are separated by a PH domain. The myosin classes XXX to XXXIV contain members from Phytophthora species and Hyaloperonospora parasitica. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276857 [Multi-domain]  Cd Length: 656  Bit Score: 507.76  E-value: 2.85e-160
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEI---PPHIYAISETAYRSMLQDR----ED 171
Cdd:cd14892      1 APLLDVLRRRYERDAIYTFTADILISINPYKSIPLLYDVPGFDSQRKEEATAsspPPHVFSIAERAYRAMKGVGkgqgTP 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  172 QSILCTGESGAGKTENTKKVIQYLA----HVASSHKGRKEHTAPGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIR 247
Cdd:cd14892     81 QSIVVSGESGAGKTEASKYIMKYLAtaskLAKGASTSKGAANAHESIEECVLLSNLILEAFGNAKTIRNDNSSRFGKYIQ 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  248 INFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGN-LPIPGQQDREIF 326
Cdd:cd14892    161 IHYNSDGRIAGASTDHFLLEKSRLVGPDANERNYHIFYQLLAGLDANENAALELTPAESFLFLNQGNcVEVDGVDDATEF 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  327 QETMESMKIMGFNHEEIMSMLKMVSAVLQFGNIVFrkERNTDQ----ASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIK 402
Cdd:cd14892    241 KQLRDAMEQLGFDAEFQRPIFEVLAAVLHLGNVRF--EENADDedvfAQSADGVNVAKAAGLLGVDAAELMFKLVTQTTS 318
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  403 VGRDYV-QKAQTKEQADFAVEALAKALYERLFRWLVHRINKALDRTKRQ---------GASFIGILDIAGFEIFELNSFE 472
Cdd:cd14892    319 TARGSVlEIKLTAREAKNALDALCKYLYGELFDWLISRINACHKQQTSGvtggaasptFSPFIGILDIFGFEIMPTNSFE 398
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  473 QLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIERPanPPGVLSLLDEECWFP-KATDKSFVE 551
Cdd:cd14892    399 QLCINFTNEMLQQQFNKHVFVLEQEVYASEGIDVSAIEFQ-DNQDCLDLIQKK--PLGLLPLLEEQMLLKrKTTDKQLLT 475
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  552 KVIQE-LGNHPKFQKPrqlRDKADLCII-HYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDkytaelwkdvdrivgld 629
Cdd:cd14892    476 IYHQThLDKHPHYAKP---RFECDEFVLrHYAGDVTYDVHGFLAKNNDNLHDDLRDLLRSSSK----------------- 535
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  630 qvsgmgemsfgssyktkkgmFRTvgqlykeSLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIR 709
Cdd:cd14892    536 --------------------FRT-------QLAELMEVLWSTTPSYIKCIKPNNLKFPGGFSCELVRDQLIYSGVLEVVR 588
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1785379715  710 ICRQGFPNRIVFQEFRQRYEIL---------TPNAIPkGFMDGKQACAIMIRALEldPNLYRIGQSKIFFR 771
Cdd:cd14892    589 IRREGFPIRRQFEEFYEKFWPLarnkagvaaSPDACD-ATTARKKCEEIVARALE--RENFQLGRTKVFLR 656
MYSc_Myo39 cd14900
class XXXIX myosin, motor domain; The class XXXIX myosins are found in Stramenopiles. Not much ...
100-731 1.16e-147

class XXXIX myosin, motor domain; The class XXXIX myosins are found in Stramenopiles. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276865  Cd Length: 627  Bit Score: 471.71  E-value: 1.16e-147
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMY-----------RGKKRHEIPPHIYAISETAYRSM-- 165
Cdd:cd14900      2 TILSALETRFYAQKIYTNTGAILLAVNPFQKLPgLYSSDTMAKYllsfearssstRNKGSDPMPPHIYQVAGEAYKAMml 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  166 --LQDREDQSILCTGESGAGKTENTKKVIQYLAHvASSHKGRKEHTAPGELE---HQLLQANPILEAFGNAKTVKNDNSS 240
Cdd:cd14900     82 glNGVMSDQSILVSGESGSGKTESTKFLMEYLAQ-AGDNNLAASVSMGKSTSgiaAKVLQTNILLESFGNARTLRNDNSS 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  241 RFGKFIRINFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEhmktdlllegfnqyrflsngnlpipGQ 320
Cdd:cd14900    161 RFGKFIKLHFTSGGRLTGASIQTYLLEKVRLVSQSKGERNYHIFYEMAIGASE-------------------------AA 215
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  321 QDREIFQETMESMKIMGFNHEEIMSMLKMVSAVLQFGNIVFRKERNTD-QASMPDNTAAQKL------CHLLGLNVTEFS 393
Cdd:cd14900    216 RKRDMYRRVMDAMDIIGFTPHERAGIFDLLAALLHIGNLTFEHDENSDrLGQLKSDLAPSSIwsrdaaATLLSVDATKLE 295
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  394 RAILMPRIKVGRDYVQKAQTKEQADFAVEALAKALYERLFRWLVHRINKAL---DRTKRQGAS-FIGILDIAGFEIFELN 469
Cdd:cd14900    296 KALSVRRIRAGTDFVSMKLSAAQANNARDALAKALYGRLFDWLVGKMNAFLkmdDSSKSHGGLhFIGILDIFGFEVFPKN 375
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  470 SFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIErpANPPGVLSLLDEECWFPKATDKSF 549
Cdd:cd14900    376 SFEQLCINFANETLQQQFNDYVFKAEQREYESQGVDWKYVEFC-DNQDCVNLIS--QRPTGILSLIDEECVMPKGSDTTL 452
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  550 VEKVIQELGNHPKFQKPRQLRDKADLCIIHYAGKVDYKADEWLMKNMDplndnvatLLHQSTdkytaelwkdVDrivgld 629
Cdd:cd14900    453 ASKLYRACGSHPRFSASRIQRARGLFTIVHYAGHVEYSTDGFLEKNKD--------VLHQEA----------VD------ 508
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  630 qvsgmgemsfgssyktkkgMFRTVGQlYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIR 709
Cdd:cd14900    509 -------------------LFVYGLQ-FKEQLTTLLETLQQTNPHYVRCLKPNDLCKAGIYERERVLNQLRCNGVMEAVR 568
                          650       660
                   ....*....|....*....|..
gi 1785379715  710 ICRQGFPNRIVFQEFRQRYEIL 731
Cdd:cd14900    569 VARAGFPIRLLHDEFVARYFSL 590
MYSc_Myo28 cd14889
class XXVIII myosin, motor domain; These myosins are found in fish, chicken, and mollusks. The ...
101-771 1.68e-142

class XXVIII myosin, motor domain; These myosins are found in fish, chicken, and mollusks. The tail regions of these class-XXVIII myosins consist of an IQ motif, a short coiled-coil region, and an SH2 domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276854  Cd Length: 659  Bit Score: 458.60  E-value: 1.68e-142
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  101 VLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSML----QDREDQSILC 176
Cdd:cd14889      3 LLEVLKVRFMQSNIYTYVGDILVAINPFKYLHIYEKEVSQKYKCEKKSSLPPHIFAVADRAYQSMLgrlaRGPKNQCIVI 82
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  177 TGESGAGKTENTKKVIQYLAHVASSHKgrkehtapgELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDvAGYI 256
Cdd:cd14889     83 SGESGAGKTESTKLLLRQIMELCRGNS---------QLEQQILQVNPLLEAFGNAQTVMNDNSSRFGKYIQLRFR-NGHV 152
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  257 VGANIETYLLEKSRAIRQAKDERTFHVFYQLLAG--AGEHMKTDLLLEGFnqYRFLSN--GNLPIPgQQDREIFQETMES 332
Cdd:cd14889    153 KGAKINEYLLEKSRVVHQDGGEENFHIFYYMFAGisAEDRENYGLLDPGK--YRYLNNgaGCKREV-QYWKKKYDEVCNA 229
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  333 MKIMGFNHEEIMSMLKMVSAVLQFGNIVFrkERNTDQASMPDNTAAQKL---CHLLGLNVTEFSRAILMPRIKVGRDYVQ 409
Cdd:cd14889    230 MDMVGFTEQEEVDMFTILAGILSLGNITF--EMDDDEALKVENDSNGWLkaaAGQFGVSEEDLLKTLTCTVTFTRGEQIQ 307
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  410 KAQTKEQADFAVEALAKALYERLFRWLVHRINKALDRTKRQG--ASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLF 487
Cdd:cd14889    308 RHHTKQQAEDARDSIAKVAYGRVFGWIVSKINQLLAPKDDSSveLREIGILDIFGFENFAVNRFEQACINLANEQLQYFF 387
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  488 NHTMFVLEQEEYQREGIEWNFIDFgLDLQPCIDLIErpANPPGVLSLLDEECWFPKATDKSFVEKVIQELGNHPKFQKPR 567
Cdd:cd14889    388 NHHIFLMEQKEYKKEGIDWKEITY-KDNKPILDLFL--NKPIGILSLLDEQSHFPQATDESFVDKLNIHFKGNSYYGKSR 464
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  568 qlRDKADLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWK-DVDRIVGLDQVSGM---GEMSFGSSY 643
Cdd:cd14889    465 --SKSPKFTVNHYAGKVTYNASGFLEKNRDTIPASIRTLFINSATPLLSVLFTaTRSRTGTLMPRAKLpqaGSDNFNSTR 542
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  644 KtkkgmfRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQE 723
Cdd:cd14889    543 K------QSVGAQFKHSLGVLMEKMFAASPHFVRCIKPNHVKVPGQLDSKYIQDQLRYNGLLETIRIRREGFSWRPSFAE 616
                          650       660       670       680       690
                   ....*....|....*....|....*....|....*....|....*....|
gi 1785379715  724 FRQRYEIL--TPNaIPKgfmdGKQACAIMIRALELDPnlYRIGQSKIFFR 771
Cdd:cd14889    617 FAERYKILlcEPA-LPG----TKQSCLRILKATKLVG--WKCGKTRLFFK 659
MYSc_Myo46 cd14907
class XLVI myosin, motor domain; The class XLVI myosins are comprised of Alveolata. Not much ...
99-734 4.74e-141

class XLVI myosin, motor domain; The class XLVI myosins are comprised of Alveolata. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276872 [Multi-domain]  Cd Length: 669  Bit Score: 454.87  E-value: 4.74e-141
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMYRGKKRH--------EIPPHIYAISETAYRSMLQDR 169
Cdd:cd14907      1 AELLINLKKRYQQDKIFTYVGPTLIVMNPYKQIDnLFSEEVMQMYKEQIIQngeyfdikKEPPHIYAIAALAFKQLFENN 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  170 EDQSILCTGESGAGKTENTKKVIQYLAHVASSHKGRKEHTAPGE-----------LEHQLLQANPILEAFGNAKTVKNDN 238
Cdd:cd14907     81 KKQAIVISGESGAGKTENAKYAMKFLTQLSQQEQNSEEVLTLTSsiratskstksIEQKILSCNPILEAFGNAKTVRNDN 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  239 SSRFGKFIRINFD-VAGYIVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEG---FNQYRFLS-NG 313
Cdd:cd14907    161 SSRFGKYVSILVDkKKRKILGARIQNYLLEKSRVTQQGQGERNYHIFYHLLYGADQQLLQQLGLKNqlsGDRYDYLKkSN 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  314 NLPIPGQQDREIFQETMESMKIMGFNHEEIMSMLKMVSAVLQFGNIVF--RKERNTDQASMPDNTAAQKLCHLLGLNVTE 391
Cdd:cd14907    241 CYEVDTINDEKLFKEVQQSFQTLGFTEEEQDSIWRILAAILLLGNLQFddSTLDDNSPCCVKNKETLQIIAKLLGIDEEE 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  392 FSRAILMPRIKVGRDYVQKAQTKEQADFAVEALAKALYERLFRWLVHRINKAL-------DRTKRQGASFIGILDIAGFE 464
Cdd:cd14907    321 LKEALTTKIRKVGNQVITSPLSKKECINNRDSLSKELYDRLFNWLVERLNDTImpkdekdQQLFQNKYLSIGLLDIFGFE 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  465 IFELNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIE--WNFIDFgLDLQPCIDLIERPanPPGVLSLLDEECWFP 542
Cdd:cd14907    401 VFQNNSFEQLCINYTNEKLQQLYISYVFKAEEQEFKEEGLEdyLNQLSY-TDNQDVIDLLDKP--PIGIFNLLDDSCKLA 477
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  543 KATDKSFVEKVIQELGNHPKFQKPRQLRdKADLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWkdv 622
Cdd:cd14907    478 TGTDEKLLNKIKKQHKNNSKLIFPNKIN-KDTFTIRHTAKEVEYNIEGFREKNKDEISQSIINCIQNSKNRIISSIF--- 553
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  623 driVGLDQVSGMGEMSFGSSYKTKKgmfrTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCN 702
Cdd:cd14907    554 ---SGEDGSQQQNQSKQKKSQKKDK----FLGSKFRNQMKQLMNELMQCDVHFIRCIKPNEEKKADLFIQGYVLNQIRYL 626
                          650       660       670
                   ....*....|....*....|....*....|..
gi 1785379715  703 GVLEGIRICRQGFPNRIVFQEFRQRYEILTPN 734
Cdd:cd14907    627 GVLESIRVRKQGYPYRKSYEDFYKQYSLLKKN 658
MYSc_Myo43 cd14904
class XLIII myosin, motor domain; The class XLIII myosins are comprised of Stramenopiles. Not ...
99-771 7.64e-138

class XLIII myosin, motor domain; The class XLIII myosins are comprised of Stramenopiles. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276869  Cd Length: 653  Bit Score: 445.54  E-value: 7.64e-138
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCT 177
Cdd:cd14904      1 PSILFNLKKRFAASKPYTYTNDIVIALNPYKWIDnLYGDHLHEQYLKKPRDKLQPHVYATSTAAYKHMLTNEMNQSILVS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  178 GESGAGKTENTKKVIQYLAHVASshkGRKEHTAPgelehQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIV 257
Cdd:cd14904     81 GESGAGKTETTKIVMNHLASVAG---GRKDKTIA-----KVIDVNPLLESFGNAKTTRNDNSSRFGKFTQLQFDGRGKLI 152
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  258 GANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFL--SNGNLPIPGQQDREIFQETMESMKI 335
Cdd:cd14904    153 GAKCETYLLEKSRVVSIAEGERNYHIFYQLLAGLSSEERKEFGLDPNCQYQYLgdSLAQMQIPGLDDAKLFASTQKSLSL 232
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  336 MGFNHEEIMSMLKMVSAVLQFGNIVFrKERNTDQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQTKE 415
Cdd:cd14904    233 IGLDNDAQRTLFKILSGVLHLGEVMF-DKSDENGSRISNGSQLSQVAKMLGLPTTRIEEALCNRSVVTRNESVTVPLAPV 311
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  416 QADFAVEALAKALYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFVLE 495
Cdd:cd14904    312 EAEENRDALAKAIYSKLFDWMVVKINAAISTDDDRIKGQIGVLDIFGFEDFAHNGFEQFCINYANEKLQQKFTTDVFKTV 391
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  496 QEEYQREGIEWNFIDFGlDLQPCIDLIErpaNPPGVLSLLDEECWFPKATDKSFVEKV---IQELGNHPKFQKPRQLRDK 572
Cdd:cd14904    392 EEEYIREGLQWDHIEYQ-DNQGIVEVID---GKMGIIALMNDHLRQPRGTEEALVNKIrtnHQTKKDNESIDFPKVKRTQ 467
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  573 adLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVDrivgldqvsGMGEMSFGSSYKTKKGMfRT 652
Cdd:cd14904    468 --FIINHYAGPVTYETVGFMEKHRDTLQNDLLDLVLLSSLDLLTELFGSSE---------APSETKEGKSGKGTKAP-KS 535
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  653 VGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILT 732
Cdd:cd14904    536 LGSQFKTSLSQLMDNIKTTNTHYVRCIKPNANKSPTEFDKRMVVEQLRSAGVIEAIRITRSGYPSRLTPKELATRYAIMF 615
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|
gi 1785379715  733 PNAIPKGfmDGKQACAIMIRAL-ELDPNLYRIGQSKIFFR 771
Cdd:cd14904    616 PPSMHSK--DVRRTCSVFMTAIgRKSPLEYQIGKSLIYFK 653
MYSc_Myo30 cd14891
class XXX myosin, motor domain; Myosins of class XXX are composed of an amino-terminal ...
99-771 1.28e-137

class XXX myosin, motor domain; Myosins of class XXX are composed of an amino-terminal SH3-like domain, two IQ motifs, a coiled-coil region and a PX domain. The myosin classes XXX to XXXIV contain members from Phytophthora species and Hyaloperonospora parasitica. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276856  Cd Length: 645  Bit Score: 444.49  E-value: 1.28e-137
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRyySGLI----YTYSGLFCVVINPYKNLPiytEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDRE---D 171
Cdd:cd14891      1 AGILHNLEER--SKLDnqrpYTFMANVLIAVNPLRRLP---EPDKSDYINTPLDPCPPHPYAIAEMAYQQMCLGSGrmqN 75
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  172 QSILCTGESGAGKTENTKKVIQYLAH------------VASSHKGRKEHTApgELEHQLLQANPILEAFGNAKTVKNDNS 239
Cdd:cd14891     76 QSIVISGESGAGKTETSKIILRFLTTravggkkasgqdIEQSSKKRKLSVT--SLDERLMDTNPILESFGNAKTLRNHNS 153
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  240 SRFGKFIRINFDVAGY-IVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGNLPI- 317
Cdd:cd14891    154 SRFGKFMKLQFTKDKFkLAGAFIETYLLEKSRLVAQPPGERNFHIFYQLLAGASAELLKELLLLSPEDFIYLNQSGCVSd 233
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  318 PGQQDREIFQETMESMKIMGFNHEEIMSMLKMVSAVLQFGNIVFRK----ERNTDQASMPDNTAAQKLCHLLGLNVTEFS 393
Cdd:cd14891    234 DNIDDAANFDNVVSALDTVGIDEDLQLQIWRILAGLLHLGNIEFDEedtsEGEAEIASESDKEALATAAELLGVDEEALE 313
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  394 RAILMPRIkVGRDYVQKAQ-TKEQADFAVEALAKALYERLFRWLVHRINKALDRtKRQGASFIGILDIAGFEIFEL-NSF 471
Cdd:cd14891    314 KVITQREI-VTRGETFTIKrNAREAVYSRDAIAKSIYERLFLWIVQQINTSLGH-DPDPLPYIGVLDIFGFESFETkNDF 391
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  472 EQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIErpANPPGVLSLLDEECWFPKATDKSFVE 551
Cdd:cd14891    392 EQLLINYANEALQATFNQQVFIAEQELYKSEGIDVGVITWP-DNRECLDLIA--SKPNGILPLLDNEARNPNPSDAKLNE 468
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  552 KVIQELGNHPKFQKPRQlRDKADLCII-HYAGKVDYKADEWLMKNMDPLNDNVATLLHQStdkytaelwkdvdrivgldq 630
Cdd:cd14891    469 TLHKTHKRHPCFPRPHP-KDMREMFIVkHYAGTVSYTIGSFIDKNNDIIPEDFEDLLASS-------------------- 527
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  631 vsgmgemsfgssyktkkgmfrtvgQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRI 710
Cdd:cd14891    528 ------------------------AKFSDQMQELVDTLEATRCNFIRCIKPNAAMKVGVFDNRYVVDQLRCSGILQTCEV 583
                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1785379715  711 CRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQA-CAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd14891    584 LKVGLPTRVTYAELVDVYKPVLPPSVTRLFAENDRTlTQAILWAFRVPSDAYRLGRTRVFFR 645
MYSc_Myo47 cd14908
class XLVII myosin, motor domain; The class XLVII myosins are comprised of Stramenopiles. Not ...
99-771 4.65e-135

class XLVII myosin, motor domain; The class XLVII myosins are comprised of Stramenopiles. Not much is known about this myosin class. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276873 [Multi-domain]  Cd Length: 682  Bit Score: 438.57  E-value: 4.65e-135
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYR--GKKRHE-------IPPHIYAISETAYRSMLQD- 168
Cdd:cd14908      1 PAILHSLSRRFFRGIIYTWTGPVLIAVNPFQRLPLYGKEILESYRqeGLLRSQgiespqaLGPHVFAIADRSYRQMMSEi 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  169 REDQSILCTGESGAGKTENTKKVIQYLAHVASSHKGRKEHTAPGE---LEHQLLQANPILEAFGNAKTVKNDNSSRFGKF 245
Cdd:cd14908     81 RASQSILISGESGAGKTESTKIVMLYLTTLGNGEEGAPNEGEELGklsIMDRVLQSNPILEAFGNARTLRNDNSSRFGKF 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  246 IRINFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGE--------HMKTDLLLEGFNQYRFLSNGNLPI 317
Cdd:cd14908    161 IELGFNRAGNLLGAKVQTYLLEKVRLPFHASGERNYHIFYQLLRGGDEeehekyefHDGITGGLQLPNEFHYTGQGGAPD 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  318 PGQ-QDREIFQETMESMKIMGFNHEEIMSMLKMVSAVLQFGNIVFRKERNtDQASMPDNTAAQK----LCHLLGLNVTEF 392
Cdd:cd14908    241 LREfTDEDGLVYTLKAMRTMGWEESSIDTILDIIAGLLHLGQLEFESKEE-DGAAEIAEEGNEKclarVAKLLGVDVDKL 319
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  393 SRAILMPRIKVGRDYVQKAQTKEQADFAVEALAKALYERLFRWLVHRINKAL--DRTKRQGASfIGILDIAGFEIFELNS 470
Cdd:cd14908    320 LRALTSKIIVVRGKEITTKLTPHKAYDARDALAKTIYGALFLWVVATVNSSInwENDKDIRSS-VGVLDIFGFECFAHNS 398
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  471 FEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIErpANPPGVLSLLDEECWFP-KATDKSF 549
Cdd:cd14908    399 FEQLCINFTNEALQQQFNQFIFKLEQKEYEKESIEWAFIEFP-DNQDCLDTIQ--AKKKGILTMLDDECRLGiRGSDANY 475
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  550 VEKVI--------QELGNHPKFQKPRQLRDKADLCIIHYAGKVDYKADEWLM-KNMDPLNdnvatllhqstdkytaelwk 620
Cdd:cd14908    476 ASRLYetylpeknQTHSENTRFEATSIQKTKLIFAVRHFAGQVQYTVETTFCeKNKDEIP-------------------- 535
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  621 dvdrivgldqvsgmgemsfgssyKTKKGMFRTvGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLR 700
Cdd:cd14908    536 -----------------------LTADSLFES-GQQFKAQLHSLIEMIEDTDPHYIRCIKPNDAAKPDLVTRKRVTEQLR 591
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  701 CNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPnAIPKGFM-------DGKQACA--------------IMIRALELDPN 759
Cdd:cd14908    592 YGGVLEAVRVARSGYPVRLPHKDFFKRYRMLLP-LIPEVVLswsmerlDPQKLCVkkmckdlvkgvlspAMVSMKNIPED 670
                          730
                   ....*....|..
gi 1785379715  760 LYRIGQSKIFFR 771
Cdd:cd14908    671 TMQLGKSKVFMR 682
MYSc_Myo35 cd14896
class XXXV myosin, motor domain; This class of metazoan myosins contains 2 IQ motifs, 2 MyTH4 ...
99-771 2.68e-134

class XXXV myosin, motor domain; This class of metazoan myosins contains 2 IQ motifs, 2 MyTH4 domains, a single FERM domain, and an SH3 domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276861 [Multi-domain]  Cd Length: 644  Bit Score: 434.98  E-value: 2.68e-134
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTG 178
Cdd:cd14896      1 SSVLLCLKKRFHLGRIYTFGGPILLSLNPHRSLPLFSEEVLASYHPRKALNTTPHIFAIAASAYRLSQSTGQDQCILLSG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  179 ESGAGKTENTKKVIQYLAHV---ASSHKGRkehtapgelehQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDvAGY 255
Cdd:cd14896     81 HSGSGKTEAAKKIVQFLSSLyqdQTEDRLR-----------QPEDVLPILESFGHAKTILNANASRFGQVLRLHLQ-HGV 148
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  256 IVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGNL-PIPGQQDREIFQETMESMK 334
Cdd:cd14896    149 IVGASVSHYLLETSRVVFQAQAERSFHVFYELLAGLDPEEREQLSLQGPETYYYLNQGGAcRLQGKEDAQDFEGLLKALQ 228
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  335 IMGFNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQ--ASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQ 412
Cdd:cd14896    229 GLGLCAEELTAIWAVLAAILQLGNICFSSSERESQevAAVSSWAEIHTAARLLQVPPERLEGAVTHRVTETPYGRVSRPL 308
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  413 TKEQADFAVEALAKALYERLFRWLVHRINKALDRTKRQGA-SFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTM 491
Cdd:cd14896    309 PVEGAIDARDALAKTLYSRLFTWLLKRINAWLAPPGEAESdATIGVVDAYGFEALRVNGLEQLCINLASERLQLFSSQTL 388
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  492 FVLEQEEYQREGIEWNFIDfGLDLQPCIDLIErpANPPGVLSLLDEECWFPKATDKSFVEKVIQELGNHPKFQKPRQlrD 571
Cdd:cd14896    389 LAQEEEECQRELLPWVPIP-QPPRESCLDLLV--DQPHSLLSILDDQTWLSQATDHTFLQKCHYHHGDHPSYAKPQL--P 463
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  572 KADLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVDRIVGLDQvsgmgemsfGSSyktkkgmfr 651
Cdd:cd14896    464 LPVFTVRHYAGTVTYQVHKFLNRNRDQLDPAVVEMLAQSQLQLVGSLFQEAEPQYGLGQ---------GKP--------- 525
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  652 TVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEIL 731
Cdd:cd14896    526 TLASRFQQSLGDLTARLGRSHVYFIHCLNPNPGKLPGLFDVGHVTEQLRQAGILEAIGTRSEGFPVRVPFQAFLARFGAL 605
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|
gi 1785379715  732 TpNAIPKGFMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd14896    606 G-SERQEALSDRERCGAILSQVLGAESPLYHLGATKVLLK 644
PTZ00014 PTZ00014
myosin-A; Provisional
97-824 2.79e-134

myosin-A; Provisional


Pssm-ID: 240229 [Multi-domain]  Cd Length: 821  Bit Score: 441.39  E-value: 2.79e-134
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   97 NEASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEI-PPHIYAISETAYRSMLQDREDQSIL 175
Cdd:PTZ00014   108 NIPCVLDFLKHRYLKNQIYTTADPLLVAINPFKDLGNTTNDWIRRYRDAKDSDKlPPHVFTTARRALENLHGVKKSQTII 187
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  176 CTGESGAGKTENTKKVIQYLAHVASSHKGRKEHTApgelehqLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGY 255
Cdd:PTZ00014   188 VSGESGAGKTEATKQIMRYFASSKSGNMDLKIQNA-------IMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGG 260
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  256 IVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGNLPIPGQQDREIFQETMESMKI 335
Cdd:PTZ00014   261 IRYGSIVAFLLEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINPKCLDVPGIDDVKDFEEVMESFDS 340
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  336 MGFNHEEIMSMLKMVSAVLQFGNIVF--RKERNTDQASM--PDNTAA-QKLCHLLGLNVTEFSRAILMPRIKVGRDYVQK 410
Cdd:PTZ00014   341 MGLSESQIEDIFSILSGVLLLGNVEIegKEEGGLTDAAAisDESLEVfNEACELLFLDYESLKKELTVKVTYAGNQKIEG 420
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  411 AQTKEQADFAVEALAKALYERLFRWLVHRINKALDRTKRQGAsFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHT 490
Cdd:PTZ00014   421 PWSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKV-FIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDI 499
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  491 MFVLEQEEYQREGIEWNFIDFgLDLQPCIDLIERPANppGVLSLLDEECWFPKATDKSFVEKVIQELGNHPKFqKPRQLR 570
Cdd:PTZ00014   500 VFERESKLYKDEGISTEELEY-TSNESVIDLLCGKGK--SVLSILEDQCLAPGGTDEKFVSSCNTNLKNNPKY-KPAKVD 575
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  571 DKADLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVdrivgldqvsgmgEMSFGssyKTKKGMF 650
Cdd:PTZ00014   576 SNKNFVIKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGV-------------EVEKG---KLAKGQL 639
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  651 rtVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEI 730
Cdd:PTZ00014   640 --IGSQFLNQLDSLMSLINSTEPHFIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFKY 717
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  731 LTPNAIPKGFMDGKQACAIMIRALELDPNLYRIGQSKIFFR---AGVLAHLEEERDLKITDIIVFFQAAARGYLARRAFy 807
Cdd:PTZ00014   718 LDLAVSNDSSLDPKEKAEKLLERSGLPKDSYAIGKTMVFLKkdaAKELTQIQREKLAAWEPLVSVLEALILKIKKKRKV- 796
                          730
                   ....*....|....*..
gi 1785379715  808 kkqqqMSALKVVQRNCA 824
Cdd:PTZ00014   797 -----RKNIKSLVRIQA 808
MYSc_Myo34 cd14895
class XXXIV myosin, motor domain; Class XXXIV myosins are composed of an IQ motif, a short ...
100-771 1.78e-132

class XXXIV myosin, motor domain; Class XXXIV myosins are composed of an IQ motif, a short coiled-coil region, 5 tandem ANK repeats, and a carboxy-terminal FYVE domain. The myosin classes XXX to XXXIV contain members from Phytophthora species and Hyaloperonospora parasitica. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276860 [Multi-domain]  Cd Length: 704  Bit Score: 432.07  E-value: 1.78e-132
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPiyteqivEMYRGKKRHE-------IPPHIYAISETAYRSMLQ----- 167
Cdd:cd14895      2 AFVDYLAQRYGVDQVYCRSGAVLIAVNPFKHIP-------GLYDLHKYREempgwtaLPPHVFSIAEGAYRSLRRrlhep 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  168 --DREDQSILCTGESGAGKTENTKKVIQYLA----HVASSHKGRKEHTAPGElehQLLQANPILEAFGNAKTVKNDNSSR 241
Cdd:cd14895     75 gaSKKNQTILVSGESGAGKTETTKFIMNYLAesskHTTATSSSKRRRAISGS---ELLSANPILESFGNARTLRNDNSSR 151
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  242 FGKFIRINF-----DVAGYIVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFN--QYRFLSNGN 314
Cdd:cd14895    152 FGKFVRMFFeghelDTSLRMIGTSVETYLLEKVRVVHQNDGERNFHVFYELLAGAADDMKLELQLELLSaqEFQYISGGQ 231
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  315 LPI--PGQQDREIFQETMESMKIMGFNHEEIMSMLKMVSAVLQFGNIVFRKERNTD---------------QASMPDNTA 377
Cdd:cd14895    232 CYQrnDGVRDDKQFQLVLQSMKVLGFTDVEQAAIWKILSALLHLGNVLFVASSEDEgeedngaasapcrlaSASPSSLTV 311
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  378 AQKL---CHLLGLNVTEFSRAILMPRIKVGRDYVQKAQTKEQADFAVEALAKALYERLFRWLVHRINKALDRTK------ 448
Cdd:cd14895    312 QQHLdivSKLFAVDQDELVSALTTRKISVGGETFHANLSLAQCGDARDAMARSLYAFLFQFLVSKVNSASPQRQfalnpn 391
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  449 ----RQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGLDlQPCIDLIEr 524
Cdd:cd14895    392 kaanKDTTPCIAVLDIFGFEEFEVNQFEQFCINYANEKLQYQFIQDILLTEQQAHIEEGIKWNAVDYEDN-SVCLEMLE- 469
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  525 pANPPGVLSLLDEECWFPKATDKSFVEKVIQELGNHPKFQKPRqlRDKADLC--IIHYAGKVDYKADEWLMKNMDPLNDN 602
Cdd:cd14895    470 -QRPSGIFSLLDEECVVPKGSDAGFARKLYQRLQEHSNFSASR--TDQADVAfqIHHYAGAVRYQAEGFCEKNKDQPNAE 546
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  603 VATLLHQSTDKYTAELWKDVDRIVGLDQVSGMGEMSFGSSYKTKKGmfrtVGQLYKESLSKLMSTLRNTNPNFVRCIIPN 682
Cdd:cd14895    547 LFSVLGKTSDAHLRELFEFFKASESAELSLGQPKLRRRSSVLSSVG----IGSQFKQQLASLLDVVQQTQTHYIRCIKPN 622
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  683 HEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACAIMIRALELdpnlyr 762
Cdd:cd14895    623 DESASDQFDMAKVSSQLRYGGVLKAVEIMRQSYPVRMKHADFVKQYRLLVAAKNASDATASALIETLKVDHAEL------ 696

                   ....*....
gi 1785379715  763 iGQSKIFFR 771
Cdd:cd14895    697 -GKTRVFLR 704
MYSc_Myo41 cd14902
class XLI myosin, motor domain; The class XLI myosins are comprised of Stramenopiles. Not much ...
99-733 2.75e-130

class XLI myosin, motor domain; The class XLI myosins are comprised of Stramenopiles. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276867 [Multi-domain]  Cd Length: 716  Bit Score: 426.62  E-value: 2.75e-130
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMYR--------GKKRHEIPPHIYAISETAYRSMLQ-D 168
Cdd:cd14902      1 AALLQALSERFEHDQIYTSIGDILVALNPLKPLPdLYSESQLNAYKasmtstspVSQLSELPPHVFAIGGKAFGGLLKpE 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  169 REDQSILCTGESGAGKTENTKKVIQYLAHV-ASSHKGRKEHTAPGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIR 247
Cdd:cd14902     81 RRNQSILVSGESGSGKTESTKFLMQFLTSVgRDQSSTEQEGSDAVEIGKRILQTNPILESFGNAQTIRNDNSSRFGKFIK 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  248 INFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFL-----SNGNLPIPGQQD 322
Cdd:cd14902    161 IQFGANNEIVGAQIVSYLLEKVRLLHQSPEERSFHIFYELLEGADKTLLDLLGLQKGGKYELLnsygpSFARKRAVADKY 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  323 REIFQETMESMKIMGFNHEEIMSMLKMVSAVLQFGNIVFRKE-RNTDQASMPDNTAAQ--KLCHLLGLNVTEFSRAILMP 399
Cdd:cd14902    241 AQLYVETVRAFEDTGVGELERLDIFKILAALLHLGNVNFTAEnGQEDATAVTAASRFHlaKCAELMGVDVDKLETLLSSR 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  400 RIKVGRDYVQKAQTKEQADFAVEALAKALYERLFRWLVHRINKALD--------RTKRQGASFIGILDIAGFEIFELNSF 471
Cdd:cd14902    321 EIKAGVEVMVLKLTPEQAKEICGSLAKAIYGRLFTWLVRRLSDEINyfdsavsiSDEDEELATIGILDIFGFESLNRNGF 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  472 EQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIERPANppGVLSLLDEECWFPKATDKSFVE 551
Cdd:cd14902    401 EQLCINYANERLQAQFNEFVFVKEQQIYIAEGIDWKNISYP-SNAACLALFDDKSN--GLFSLLDQECLMPKGSNQALST 477
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  552 KVIQELGNHPKFqkprqlrdkadlCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDkytaelwkDVDRIVGLDQV 631
Cdd:cd14902    478 KFYRYHGGLGQF------------VVHHFAGRVCYNVEQFVEKNTDALPADASDILSSSSN--------EVVVAIGADEN 537
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  632 SGMGEMSFGSSYKTKKGMFRT--VGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIR 709
Cdd:cd14902    538 RDSPGADNGAAGRRRYSMLRApsVSAQFKSQLDRLIVQIGRTEAHYVRCLKPNEVKKPGIFDRERMVEQMRSVGVLEAVR 617
                          650       660
                   ....*....|....*....|....
gi 1785379715  710 ICRQGFPNRIVFQEFRQRYEILTP 733
Cdd:cd14902    618 IARHGYSVRLAHASFIELFSGFKC 641
MYSc_Myo14 cd14876
class XIV myosin, motor domain; These myosins localize to plasma membranes of the ...
99-769 2.59e-126

class XIV myosin, motor domain; These myosins localize to plasma membranes of the intracellular parasites and may be involved in the cell invasion process. Their known functions include: transporting phagosomes to the nucleus and perturbing the developmentally regulated elimination of the macronucleus during conjugation. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. C-terminal to their motor domain these myosins have a MyTH4-FERM protein domain combination. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276843  Cd Length: 649  Bit Score: 412.84  E-value: 2.59e-126
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRH-EIPPHIYAISETAYRSMLQDREDQSILCT 177
Cdd:cd14876      1 PCVLDFLKHRYLKNQIYTTADPLLVAINPFKDLGNATDEWIRKYRDAPDLtKLPPHVFYTARRALENLHGVNKSQTIIVS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  178 GESGAGKTENTKKVIQYLAHVASSHKGRKEHTApgelehqLLQANPILEAFGNAKTVKNDNSSRFGKFIRInfDVA--GY 255
Cdd:cd14876     81 GESGAGKTEATKQIMRYFASAKSGNMDLRIQTA-------IMAANPVLEAFGNAKTIRNNNSSRFGRFMQL--DVAseGG 151
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  256 IVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGNLPIPGQQDREIFQETMESMKI 335
Cdd:cd14876    152 IRYGSVVAFLLEKSRIVTQDDNERSYHIFYQLLKGADSEMKSKYHLLGLKEYKFLNPKCLDVPGIDDVADFEEVLESLKS 231
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  336 MGFNHEEIMSMLKMVSAVLQFGNIVFRKErntDQASMPDntAA----------QKLCHLLGLNVTEFSRAILMPRIKVGR 405
Cdd:cd14876    232 MGLTEEQIDTVFSIVSGVLLLGNVKITGK---TEQGVDD--AAaisneslevfKEACSLLFLDPEALKRELTVKVTKAGG 306
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  406 DYVQKAQTKEQADFAVEALAKALYERLFRWLVHRINKALDrtKRQG-ASFIGILDIAGFEIFELNSFEQLCINYTNEKLQ 484
Cdd:cd14876    307 QEIEGRWTKDDAEMLKLSLAKAMYDKLFLWIIRNLNSTIE--PPGGfKNFMGMLDIFGFEVFKNNSLEQLFINITNEMLQ 384
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  485 QLFNHTMFVLEQEEYQREGIEWNFIDFgLDLQPCIDLIERPANppGVLSLLDEECWFPKATDKSFVEKVIQELGNHPKFq 564
Cdd:cd14876    385 KNFIDIVFERESKLYKDEGIPTAELEY-TSNAEVIDVLCGKGK--SVLSILEDQCLAPGGSDEKFVSACVSKLKSNGKF- 460
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  565 KPRQLRDKADLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVdrivgldqvsgmgEMSFGssyK 644
Cdd:cd14876    461 KPAKVDSNINFIVVHTIGDIQYNAEGFLFKNKDVLRAELVEVVQASTNPVVKALFEGV-------------VVEKG---K 524
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  645 TKKGMFrtVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEF 724
Cdd:cd14876    525 IAKGSL--IGSQFLKQLESLMGLINSTEPHFIRCIKPNETKKPLEWNSSKVLIQLHALSILEALQLRQLGYSYRRPFEEF 602
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|....*
gi 1785379715  725 RQRYEILTPNAIPKGFMDGKQACAIMIRALELDPNLYRIGQSKIF 769
Cdd:cd14876    603 LYQFKFLDLGIANDKSLDPKVAALKLLESSGLSEDEYAIGKTMVF 647
MYSc_Myo18 cd01386
class XVIII myosin, motor domain; Many members of this class contain a N-terminal PDZ domain ...
99-771 3.51e-124

class XVIII myosin, motor domain; Many members of this class contain a N-terminal PDZ domain which is commonly found in proteins establishing molecular complexes. The motor domain itself does not exhibit ATPase activity, suggesting that it functions as an actin tether protein. It also has two IQ domains that probably bind light chains or related calmodulins and a C-terminal tail with two sections of coiled-coil domains, which are thought to mediate homodimerization. The function of these myosins are largely unknown. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276837 [Multi-domain]  Cd Length: 689  Bit Score: 408.24  E-value: 3.51e-124
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTG 178
Cdd:cd01386      1 SSVLHTLRQRYGANLIHTYAGPSLIVINPRHPLAVYSEKVAKMFKGCRREDMPPHIYASAQSAYRAMLMSRRDQSIVLLG 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  179 ESGAGKTENTKKVIQYLAHVASSHKGRkehtapgeLEHQLLQA-NPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIV 257
Cdd:cd01386     81 RSGSGKTTNCRHILEYLVTAAGSVGGV--------LSVEKLNAaLTVLEAFGNVRTALNGNATRFSQLFSLDFDQAGQLA 152
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  258 GANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNqyrflSNGNLPIPGQQDREIFQETM------- 330
Cdd:cd01386    153 SASIQTLLLERSRVARRPEGESNFNVFYYLLAGADAALRTELHLNQLA-----ESNSFGIVPLQKPEDKQKAAaafsklq 227
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  331 ESMKIMGFNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGLNVTEFSRAILMP----------- 399
Cdd:cd01386    228 AAMKTLGISEEEQRAIWSILAAIYHLGAAGATKAASAGRKQFARPEWAQRAAYLLGCTLEELSSAIFKHhlsggpqqstt 307
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  400 -RIKVGRDYVQKAQTKEQADFAVEALAKALYERLFRWLVHRINKALDRTKRQGASfIGILDIAGFEIFELN------SFE 472
Cdd:cd01386    308 sSGQESPARSSSGGPKLTGVEALEGFAAGLYSELFAAVVSLINRSLSSSHHSTSS-ITIVDTPGFQNPAHSgsqrgaTFE 386
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  473 QLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGLDLQPCIDLIERP---ANPP---------GVLSLLDEECW 540
Cdd:cd01386    387 DLCHNYAQERLQLLFHERTFVAPLERYKQENVEVDFDLPELSPGALVALIDQApqqALVRsdlrdedrrGLLWLLDEEAL 466
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  541 FPKATDKSFVEKVIQELG--NHPKFQKPRQLRDKADLCII-HYAGK--VDYKADEWLMK-NMDPLNDNVATLLHQSTDKY 614
Cdd:cd01386    467 YPGSSDDTFLERLFSHYGdkEGGKGHSLLRRSEGPLQFVLgHLLGTnpVEYDVSGWLKAaKENPSAQNATQLLQESQKET 546
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  615 TAelwkdvdrivgldqvsgmgemsfgssyKTKKGMFRTVgqlyKESLSKLMSTLRNTNPNFVRCIIPNHE------KKAG 688
Cdd:cd01386    547 AA---------------------------VKRKSPCLQI----KFQVDALIDTLRRTGLHFVHCLLPQHNagkderSTSS 595
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  689 KLEPHLVLD------QLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGF-----MDGKQACAIMIRALELD 757
Cdd:cd01386    596 PAAGDELLDvpllrsQLRGSQLLDALRLYRQGFPDHMPLGEFRRRFQVLAPPLTKKLGlnsevADERKAVEELLEELDLE 675
                          730
                   ....*....|....
gi 1785379715  758 PNLYRIGQSKIFFR 771
Cdd:cd01386    676 KSSYRIGLSQVFFR 689
MYSc_Myo19 cd14880
class XIX myosin, motor domain; Monomeric myosin-XIX (Myo19) functions as an actin-based motor ...
99-733 4.94e-119

class XIX myosin, motor domain; Monomeric myosin-XIX (Myo19) functions as an actin-based motor for mitochondrial movement in vertebrate cells. It contains a variable number of IQ domains. Human myo19 contains a motor domain, three IQ motifs, and a short tail. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276846 [Multi-domain]  Cd Length: 658  Bit Score: 392.29  E-value: 4.94e-119
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMYRGKKR-HEIPPHIYAISETAYRSMLQDRE--DQSI 174
Cdd:cd14880      1 ETVLRCLQARYTADTFYTNAGCTLVALNPFKPVPqLYSPELMREYHAAPQpQKLKPHIFTVGEQTYRNVKSLIEpvNQSI 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  175 LCTGESGAGKTENTKKVIQYLAHVASSHKGRKEHTAPGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAG 254
Cdd:cd14880     81 VVSGESGAGKTWTSRCLMKFYAVVAASPTSWESHKIAERIEQRILNSNPVMEAFGNACTLRNNNSSRFGKFIQLQLNRAQ 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  255 YIVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSN--GNLpipgqqDREIFQETMES 332
Cdd:cd14880    161 QMTGAAVQTYLLEKTRVACQAPSERNFHIFYQICKGASADERLQWHLPEGAAFSWLPNpeRNL------EEDCFEVTREA 234
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  333 MKIMGFNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASMPDNTA---AQKLCHLLGLNVTEFSRAILMPRIKVGRDYV- 408
Cdd:cd14880    235 MLHLGIDTPTQNNIFKVLAGLLHLGNIQFADSEDEAQPCQPMDDTkesVRTSALLLKLPEDHLLETLQIRTIRAGKQQQv 314
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  409 -QKAQTKEQADFAVEALAKALYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLF 487
Cdd:cd14880    315 fKKPCSRAECDTRRDCLAKLIYARLFDWLVSVINSSICADTDSWTTFIGLLDVYGFESFPENSLEQLCINYANEKLQQHF 394
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  488 NHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIErpANPPGVLSLLDEECWFPKATDKSFVEKVIQE-LGNHPKFQKP 566
Cdd:cd14880    395 VAHYLRAQQEEYAVEGLEWSFINYQ-DNQTCLDLIE--GSPISICSLINEECRLNRPSSAAQLQTRIESaLAGNPCLGHN 471
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  567 RqLRDKADLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVDRIVGLDQVSGmgemsfgssykTK 646
Cdd:cd14880    472 K-LSREPSFIVVHYAGPVRYHTAGLVEKNKDPVPPELTRLLQQSQDPLLQKLFPANPEEKTQEEPSG-----------QS 539
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  647 KGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQ 726
Cdd:cd14880    540 RAPVLTVVSKFKASLEQLLQVLHSTTPHYIRCIKPNSQCQAQTFLQEEVLSQLEACGLVETIHISAAGFPIRVSHQNFVE 619

                   ....*..
gi 1785379715  727 RYEILTP 733
Cdd:cd14880    620 RYKLLRR 626
MYSc_Myo45 cd14906
class XLV myosin, motor domain; The class XLVI myosins are comprised of slime molds ...
99-734 1.64e-116

class XLV myosin, motor domain; The class XLVI myosins are comprised of slime molds Dictyostelium and Polysphondylium. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276871 [Multi-domain]  Cd Length: 715  Bit Score: 387.03  E-value: 1.64e-116
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMYRGKKR-HEIPPHIYAISETAYRSMLQDREDQSILC 176
Cdd:cd14906      1 AIILNNLGKRYKSDSIYTYIGNVLISINPYKDISsIYSNLILNEYKDINQnKSPIPHIYAVALRAYQSMVSEKKNQSIII 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  177 TGESGAGKTENTKKVIQYLAHVASSHKGRKEH--TAPGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAG 254
Cdd:cd14906     81 SGESGSGKTEASKTILQYLINTSSSNQQQNNNnnNNNNSIEKDILTSNPILEAFGNSRTTKNHNSSRFGKFLKIEFRSSD 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  255 YIV-GANIETYLLEKSR-AIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEG-FNQYRFL--------------SNGNLPI 317
Cdd:cd14906    161 GKIdGASIETYLLEKSRiSHRPDNINLSYHIFYYLVYGASKDERSKWGLNNdPSKYRYLdarddvissfksqsSNKNSNH 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  318 PGQQDR-EIFQETMESMKIMGFNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQAS--MPDNTAA-QKLCHLLGLNVTEFS 393
Cdd:cd14906    241 NNKTESiESFQLLKQSMESMSINKEQCDAIFLSLAAILHLGNIEFEEDSDFSKYAyqKDKVTASlESVSKLLGYIESVFK 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  394 RAILMPRIKV-GRDYVQ-KAQTKEQADFAVEALAKALYERLFRWLVHRINKALDR----------TKRQGASFIGILDIA 461
Cdd:cd14906    321 QALLNRNLKAgGRGSVYcRPMEVAQSEQTRDALSKSLYVRLFKYIVEKINRKFNQntqsndlaggSNKKNNLFIGVLDIF 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  462 GFEIFELNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFgLDLQPCIDLIERPANppGVLSLLDEECWF 541
Cdd:cd14906    401 GFENLSSNSLEQLLINFTNEKLQQQFNLNVFENEQKEYLSEGIPWSNSNF-IDNKECIELIEKKSD--GILSLLDDECIM 477
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  542 PKATDKSFVEKVIQELGNHPKFQKpRQLrDKADLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELwkd 621
Cdd:cd14906    478 PKGSEQSLLEKYNKQYHNTNQYYQ-RTL-AKGTLGIKHFAGDVTYQTDGWLEKNRDSLYSDVEDLLLASSNFLKKSL--- 552
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  622 vdrivgldqvSGMGEMSFGSSYKTKKGMFRTVGQlYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRC 701
Cdd:cd14906    553 ----------FQQQITSTTNTTKKQTQSNTVSGQ-FLEQLNQLIQTINSTSVHYIRCIKPNQTMDCNNFNNVHVLSQLRN 621
                          650       660       670
                   ....*....|....*....|....*....|...
gi 1785379715  702 NGVLEGIRICRQGFPNRIVFQEFRQRYEILTPN 734
Cdd:cd14906    622 VGVLNTIKVRKMGYSYRRDFNQFFSRYKCIVDM 654
MYSc_Myo25 cd14886
class XXV myosin, motor domain; These myosins are MyTH-FERM myosins that play a role in cell ...
99-771 1.22e-112

class XXV myosin, motor domain; These myosins are MyTH-FERM myosins that play a role in cell adhesion and filopodia formation. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276851  Cd Length: 650  Bit Score: 373.84  E-value: 1.22e-112
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMYRGKKRH-----EIPPHIYAISETAYRSMLQDREDQ 172
Cdd:cd14886      1 AVVIDILRDRFAKDKIYTYAGKLLVALNPFKQIRnLYGTEVIGRYRQADTSrgfpsDLPPHSYAVAQSALNGLISDGISQ 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  173 SILCTGESGAGKTENTKKVIQYLAHVASshkgrkehTAPGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDV 252
Cdd:cd14886     81 SCIVSGESGAGKTETAKQLMNFFAYGHS--------TSSTDVQSLILGSNPLLESFGNAKTLRNNNSSRFGKFIKLLVGP 152
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  253 AGYIVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGN-LPIPGQQDREIFQETME 331
Cdd:cd14886    153 DGGLKGGKITSYMLELSRIEFQSTNERNYHIFYQCIKGLSPEEKKSLGFKSLESYNFLNASKcYDAPGIDDQKEFAPVRS 232
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  332 SMKIMgFNHEEIMSMLKMVSAVLQFGNIVFRKERN--TDQASMPDNTAA-QKLCHLLGLNVTEFSRAILMPRIKVGRDYV 408
Cdd:cd14886    233 QLEKL-FSKNEIDSFYKCISGILLAGNIEFSEEGDmgVINAAKISNDEDfGKMCELLGIESSKAAQAIITKVVVINNETI 311
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  409 QKAQTKEQADFAVEALAKALYERLFRWLVHRINKAL---DRTKRqgasFIGILDIAGFEIFELNSFEQLCINYTNEKLQQ 485
Cdd:cd14886    312 ISPVTQAQAEVNIRAVAKDLYGALFELCVDTLNEIIqfdADARP----WIGILDIYGFEFFERNTYEQLLINYANERLQQ 387
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  486 LFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIERPANppGVLSLLDEECWFPKATDKSFVEKVIQELGNHpkfqk 565
Cdd:cd14886    388 YFINQVFKSEIQEYEIEGIDHSMITFT-DNSNVLAVFDKPNL--SIFSFLEEQCLIQTGSSEKFTSSCKSKIKNN----- 459
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  566 pRQLRDKADLC---IIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVDRIVGLdqvsgmgemsfgss 642
Cdd:cd14886    460 -SFIPGKGSQCnftIVHTAATVTYNTEEFVDKNKHKLSVDILELLMGSTNPIVNKAFSDIPNEDGN-------------- 524
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  643 yktKKGMFrtVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQ 722
Cdd:cd14886    525 ---MKGKF--LGSTFQLSIDQLMKTLSATKSHFIRCIKTNQDKVPNKYETKSVYNQLISLSIFESIQTIHRGFAYNDTFE 599
                          650       660       670       680       690
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1785379715  723 EFRQRYEILT--PNAIPKGFMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd14886    600 EFFHRNKILIshNSSSQNAGEDLVEAVKSILENLGIPCSDYRIGKTKVFLR 650
MYSc_Myo13 cd14875
class XIII myosin, motor domain; These myosins have an N-terminal motor domain, a light-chain ...
99-771 1.57e-110

class XIII myosin, motor domain; These myosins have an N-terminal motor domain, a light-chain binding domain, and a C-terminal GPA/Q-rich domain. There is little known about the function of this myosin class. Two of the earliest members identified in this class are green alga Acetabularia cliftonii, Aclmyo1 and Aclmyo2. They are striking with their short tail of Aclmyo1 of 18 residues and the maximum of 7 IQ motifs in Aclmyo2. It is thought that these myosins are involved in organelle transport and tip growth. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276842 [Multi-domain]  Cd Length: 664  Bit Score: 368.37  E-value: 1.57e-110
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYS-GLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRG-KKRHEIPPHIYAISETAYRSM-LQDREDQSIL 175
Cdd:cd14875      1 ATLLHCIKERFEKlHQQYSLMGEMVLSVNPFRLMPFNSEEERKKYLAlPDPRLLPPHIWQVAHKAFNAIfVQGLGNQSVV 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  176 CTGESGAGKTENTKKVIQYLAHVASSHKGR-KEHTAPGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFD-VA 253
Cdd:cd14875     81 ISGESGSGKTENAKMLIAYLGQLSYMHSSNtSQRSIADKIDENLKWSNPVMESFGNARTVRNDNSSRFGKYIKLYFDpTS 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  254 GYIVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDL-LLEGFNQYRFLSNGNL----PIPGQ--QDREIF 326
Cdd:cd14875    161 GVMVGGQTVTYLLEKSRIIMQSPGERNYHIFYEMLAGLSPEEKKELgGLKTAQDYKCLNGGNTfvrrGVDGKtlDDAHEF 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  327 QETMESMKIMGFNHEEIMSMLKMVSAVLQFGNIVFRKERNtDQASMPDNTAAQKLCHLLGLNVTEFSRAILmprIKVGRD 406
Cdd:cd14875    241 QNVRHALSMIGVELETQNSIFRVLASILHLMEVEFESDQN-DKAQIADETPFLTACRLLQLDPAKLRECFL---VKSKTS 316
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  407 YVQKAQTKEQADFAVEALAKALYERLFRWLVHRINKALD-RTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQ 485
Cdd:cd14875    317 LVTILANKTEAEGFRNAFCKAIYVGLFDRLVEFVNASITpQGDCSGCKYIGLLDIFGFENFTRNSFEQLCINYANESLQN 396
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  486 LFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIErpANPPGVLSLLDEECWFPKATDKSFVEKVIQELGNH----- 560
Cdd:cd14875    397 HYNKYTFINDEEECRREGIQIPKIEFP-DNSECVNMFD--QKRTGIFSMLDEECNFKGGTTERFTTNLWDQWANKspyfv 473
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  561 -PKFQKPRQLRdkadlcIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELwkdvdrivgldqvsgmgemsf 639
Cdd:cd14875    474 lPKSTIPNQFG------VNHYAAFVNYNTDEWLEKNTDALKEDMYECVSNSTDEFIRTL--------------------- 526
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  640 gssYKTKKGMFR---TVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFP 716
Cdd:cd14875    527 ---LSTEKGLARrkqTVAIRFQRQLTDLRTELESTETQFIRCIKPNMEASPSFLDNLLVGSQLESAGVLQTIALKRQGYP 603
                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1785379715  717 NRIVFQEFRQRYEILTPNAIPKGFMDGK---QACAIMIRALEL----DPNlYRIGQSKIFFR 771
Cdd:cd14875    604 VRRPIEQFCRYFYLIMPRSTASLFKQEKyseAAKDFLAYYQRLygwaKPN-YAVGKTKVFLR 664
MYSc_Myo38 cd14899
class XXXVIII myosin; The class XXXVIII myosins are comprised of Stramenopiles. Not much is ...
99-728 1.62e-105

class XXXVIII myosin; The class XXXVIII myosins are comprised of Stramenopiles. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276864 [Multi-domain]  Cd Length: 717  Bit Score: 355.56  E-value: 1.62e-105
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMY----------RGKKRHEIPPHIYAISETAYRSMLQ 167
Cdd:cd14899      1 ASILNALRLRYERHAIYTHIGDILISINPFQDLPqLYGDEILRGYaydhnsqfgdRVTSTDPREPHLFAVARAAYIDIVQ 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  168 DREDQSILCTGESGAGKTENTKKVIQYLAHVASSHKGRKEHTAPGE---------LEHQLLQANPILEAFGNAKTVKNDN 238
Cdd:cd14899     81 NGRSQSILISGESGAGKTEATKIIMTYFAVHCGTGNNNLTNSESISppaspsrttIEEQVLQSNPILEAFGNARTVRNDN 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  239 SSRFGKFIRINF-DVAGYIVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAG----AGEHMKTDLLLEGFNQYRFLSNG 313
Cdd:cd14899    161 SSRFGKFIELRFrDERRRLAGARIRTYLLEKIRVIKQAPHERNFHIFYELLSAdnncVSKEQKQVLALSGGPQSFRLLNQ 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  314 NLPIP---GQQDREIFQETMESMKIMGFNHEEIMSMLKMVSAVLQFGNIVF-----RKERNT--DQASMPDNTAA----- 378
Cdd:cd14899    241 SLCSKrrdGVKDGVQFRATKRAMQQLGMSEGEIGGVLEIVAAVLHMGNVDFeqiphKGDDTVfaDEARVMSSTTGafdhf 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  379 QKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQTKEQADFAVEALAKALYERLFRWLVHRINKALDRT----------- 447
Cdd:cd14899    321 TKAAELLGVSTEALDHALTKRWLHASNETLVVGVDVAHARNTRNALTMECYRLLFEWLVARVNNKLQRQasapwgadesd 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  448 ---KRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIER 524
Cdd:cd14899    401 vddEEDATDFIGLLDIFGFEDMAENSFEQLCINYANEALQHQFNQYIFEEEQRLYRDEGIRWSFVDFP-NNRACLELFEH 479
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  525 paNPPGVLSLLDEECWFPKATDKSFVEKVIQEL---GNHPKFQKPRQLRDKADLCIIHYAGKVDYKADEWLMKNMDPLND 601
Cdd:cd14899    480 --RPIGIFSLTDQECVFPQGTDRALVAKYYLEFekkNSHPHFRSAPLIQRTTQFVVAHYAGCVTYTIDGFLAKNKDSFCE 557
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  602 NVATLLHQSTDKYTAELWKDVDRIVGLDQVSGMGEMSFGSSYKTKKGMFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIP 681
Cdd:cd14899    558 SAAQLLAGSSNPLIQALAAGSNDEDANGDSELDGFGGRTRRRAKSAIAAVSVGTQFKIQLNELLSTVRATTPRYVRCIKP 637
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|....*..
gi 1785379715  682 NHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRY 728
Cdd:cd14899    638 NDSHVGSLFQSTRVVEQLRSGGVLEAVRVARAGFPVRLTHKQFLGRY 684
MYSc_Myo26 cd14887
class XXVI myosin, motor domain; These MyTH-FERM myosins are thought to be related to the ...
99-771 2.84e-102

class XXVI myosin, motor domain; These MyTH-FERM myosins are thought to be related to the other myosins that have a MyTH4 domain such as class III, VII, IX, X , XV, XVI, XVII, XX, XXII, XXV, and XXXIV. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276852  Cd Length: 725  Bit Score: 346.25  E-value: 2.84e-102
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYS--------GLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDRE 170
Cdd:cd14887      1 PNLLENLYQRYNKayinkenrNCIYTYTGTLLIAVNPYRFFNLYDRQWISRFDTEANSRLVPHPFGLAEFAYCRLVRDRR 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  171 DQSILCTGESGAGKTENTKKVIQYLAHVASSHKGRKEHTapgeLEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINF 250
Cdd:cd14887     81 SQSILISGESGAGKTETSKHVLTYLAAVSDRRHGADSQG----LEARLLQSGPVLEAFGNAHTVLNANSSRFGKMLLLHF 156
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  251 DVAGYIVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLlegfnqyrflsngnlpiPGQQDREIFQ--- 327
Cdd:cd14887    157 TGRGKLTRASVATYLLANERVVRIPSDEFSFHIFYALCNAAVAAATQKSS-----------------AGEGDPESTDlrr 219
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  328 --ETMESMKIMGFNHEEImsmLKMVSAVLQFGNIVFRKERNTDQASMPDNTA--------AQKLCHLL-------GLNVT 390
Cdd:cd14887    220 itAAMKTVGIGGGEQADI---FKLLAAILHLGNVEFTTDQEPETSKKRKLTSvsvgceetAADRSHSSevkclssGLKVT 296
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  391 EFSRAIL--------MPRIKVGRDYV------------QKAQTKEQADFAVEALAKALYERLFRWLVHRINKALDRTKR- 449
Cdd:cd14887    297 EASRKHLktvarllgLPPGVEGEEMLrlalvsrsvretRSFFDLDGAAAARDAACKNLYSRAFDAVVARINAGLQRSAKp 376
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  450 ------------QGASFIGILDIAGFEIFE---LNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFI--DFG 512
Cdd:cd14887    377 sesdsdedtpstTGTQTIGILDLFGFEDLRnhsKNRLEQLCINYANERLHCFLLEQLILNEHMLYTQEGVFQNQDcsAFP 456
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  513 LDLQPCIDLIERPAN---------------------PPGVLSLLDE------ECWFPKATDKSFVEKVIQELGNHPKFQK 565
Cdd:cd14887    457 FSFPLASTLTSSPSStspfsptpsfrsssafatspsLPSSLSSLSSslssspPVWEGRDNSDLFYEKLNKNIINSAKYKN 536
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  566 --PRQLRDKADLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLhQSTDKYTaelwkdvdRIVGLDQVSGMgemsfgSSY 643
Cdd:cd14887    537 itPALSRENLEFTVSHFACDVTYDARDFCRANREATSDELERLF-LACSTYT--------RLVGSKKNSGV------RAI 601
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  644 KTKKgmfRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQE 723
Cdd:cd14887    602 SSRR---STLSAQFASQLQQVLKALQETSCHFIRCVKPNRVQEAGIFEDAYVHRQLRCSGMSDLLRVMADGFPCRLPYVE 678
                          730       740       750       760
                   ....*....|....*....|....*....|....*....|....*...
gi 1785379715  724 FRQRYEILTPNAIpKGFMDGKQACAIMIRALELDPNLYRIGQSKIFFR 771
Cdd:cd14887    679 LWRRYETKLPMAL-REALTPKMFCKIVLMFLEINSNSYTFGKTKIFFR 725
MYSc_Myo37 cd14898
class XXXVII myosin, motor domain; The class XXXVIII myosins are comprised of fungi. Not much ...
100-735 8.19e-100

class XXXVII myosin, motor domain; The class XXXVIII myosins are comprised of fungi. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276863  Cd Length: 578  Bit Score: 334.17  E-value: 8.19e-100
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNlpIYTEQIVEMYRGKKRHeIPPHIYAISETAYRSMLQdREDQSILCTGE 179
Cdd:cd14898      2 ATLEILEKRYASGKIYTKSGLVFLALNPYET--IYGAGAMKAYLKNYSH-VEPHVYDVAEASVQDLLV-HGNQTIVISGE 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  180 SGAGKTENTKKVIQYLAhvasshkgrkEHTAPGE-LEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDvaGYIVG 258
Cdd:cd14898     78 SGSGKTENAKLVIKYLV----------ERTASTTsIEKLITAANLILEAFGNAKTQLNDNSSRFGKRIKLKFD--GKITG 145
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  259 ANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDlllegFNQYRF-LSNGNLPIPGQQDREIFQETMESMKIMG 337
Cdd:cd14898    146 AKFETYLLEKSRVTHHEKGERNFHIFYQFCASKRLNIKND-----FIDTSStAGNKESIVQLSEKYKMTCSAMKSLGIAN 220
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  338 FnhEEIMSMLKmvsAVLQFGNIVFRKERNTDQASmpdNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQTKEQA 417
Cdd:cd14898    221 F--KSIEDCLL---GILYLGSIQFVNDGILKLQR---NESFTEFCKLHNIQEEDFEESLVKFSIQVKGETIEVFNTLKQA 292
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  418 DFAVEALAKALYERLFRWLVHRINKALDRTkrqGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFVLEQE 497
Cdd:cd14898    293 RTIRNSMARLLYSNVFNYITASINNCLEGS---GERSISVLDIFGFEIFESNGLDQLCINWTNEKIQNDFIKKMFRAKQG 369
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  498 EYQREGIEWNFIDFgLDLQPCIDLIERPAnppGVLSLLDEECWFPKATDKSFVEKvIQELGNHpkfqkprQLRDKADLCI 577
Cdd:cd14898    370 MYKEEGIEWPDVEF-FDNNQCIRDFEKPC---GLMDLISEESFNAWGNVKNLLVK-IKKYLNG-------FINTKARDKI 437
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  578 I--HYAGKVDYKADEWLMKNMDplndnvatllhqstdkytaelwkdvdrivgldqvsGMGEMSFGSSYKTKKGMFRTVGQ 655
Cdd:cd14898    438 KvsHYAGDVEYDLRDFLDKNRE-----------------------------------KGQLLIFKNLLINDEGSKEDLVK 482
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  656 LYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNA 735
Cdd:cd14898    483 YFKDSMNKLLNSINETQAKYIKCIRPNEECRPWCFDRDLVSKQLAECGILETIRLSKQCFPQEIPKDRFEERYRILGITL 562
MYSc_Myo17 cd14879
class XVII myosin, motor domain; This fungal myosin which is also known as chitin synthase ...
96-770 8.74e-95

class XVII myosin, motor domain; This fungal myosin which is also known as chitin synthase uses its motor domain to tether its vesicular cargo to peripheral actin. It works in opposition to dynein, contributing to the retention of Mcs1 vesicles at the site of cell growth and increasing vesicle fusion necessary for polarized growth. Class 17 myosins consist of a N-terminal myosin motor domain with Cyt-b5, chitin synthase 2, and a DEK_C domains at it C-terminus. The chitin synthase region contains several transmembrane domains by which myosin 17 is thought to bind secretory vesicles. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276845 [Multi-domain]  Cd Length: 647  Bit Score: 321.81  E-value: 8.74e-95
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   96 LNEASVLHNLKDRYYSGLIYTY---SGLfcVVINPYKNLPIYTEQIVEMYR-------GKKRHEIPPHIYAISETAYRSM 165
Cdd:cd14879      1 PSDDAITSHLASRFRSDLPYTRlgsSAL--VAVNPYKYLSSNSDASLGEYGseyydttSGSKEPLPPHAYDLAARAYLRM 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  166 LQDREDQSILCTGESGAGKTENTKKVIQYLAHV-ASSHKGRKehtapgeLEHQLLQANPILEAFGNAKTVKNDNSSRFGK 244
Cdd:cd14879     79 RRRSEDQAVVFLGETGSGKSESRRLLLRQLLRLsSHSKKGTK-------LSSQISAAEFVLDSFGNAKTLTNPNASRFGR 151
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  245 FIRINFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGNL----PIPGQ 320
Cdd:cd14879    152 YTELQFNERGRLIGAKVLDYRLERSRVASVPTGERNFHVFYYLLAGASPEERQHLGLDDPSDYALLASYGChplpLGPGS 231
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  321 QDREIFQETMESMKIMGFNHEEIMSMLKMVSAVLQFGNIVFR--KERNTDQASMpDNTAA-QKLCHLLGLNVTEFsRAIL 397
Cdd:cd14879    232 DDAEGFQELKTALKTLGFKRKHVAQICQLLAAILHLGNLEFTydHEGGEESAVV-KNTDVlDIVAAFLGVSPEDL-ETSL 309
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  398 MPRIK-VGRD----YVQKAQTKEQADfaveALAKALYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIF---ELN 469
Cdd:cd14879    310 TYKTKlVRKElctvFLDPEGAAAQRD----ELARTLYSLLFAWVVETINQKLCAPEDDFATFISLLDFPGFQNRsstGGN 385
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  470 SFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFgLDLQPCIDLIERPanPPGVLSLLDEEC-WFPKATDKS 548
Cdd:cd14879    386 SLDQFCVNFANERLHNYVLRSFFERKAEELEAEGVSVPATSY-FDNSDCVRLLRGK--PGGLLGILDDQTrRMPKKTDEQ 462
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  549 FVEKVIQELGNHPKF---QKPRQLRDKADLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLhqstdkytaelwkdvdri 625
Cdd:cd14879    463 MLEALRKRFGNHSSFiavGNFATRSGSASFTVNHYAGEVTYSVEGFLERNGDVLSPDFVNLL------------------ 524
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  626 vgldqvsgmgemsfgssyktkkgmfRTVGQLyKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVL 705
Cdd:cd14879    525 -------------------------RGATQL-NAALSELLDTLDRTRLWSVFCIRPNDSQLPNSFDKRRVKAQIRSLGLP 578
                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1785379715  706 EGIRICRQGFPNRIVFQEFRQRYEILTPnaipkgFMDGKQACAIMIRALELDPNLYRIGQSKIFF 770
Cdd:cd14879    579 ELAARLRVEYVVSLEHAEFCERYKSTLR------GSAAERIRQCARANGWWEGRDYVLGNTKVFL 637
MYSc_Myo16 cd14878
class XVI myosin, motor domain; These XVI type myosins are also known as Neuronal ...
99-771 7.53e-92

class XVI myosin, motor domain; These XVI type myosins are also known as Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 3/NYAP3. Myo16 is thought to play a regulatory role in cell cycle progression and has been recently implicated in Schizophrenia. Class XVI myosins are characterized by an N-terminal ankyrin repeat domain and some with chitin synthase domains that arose independently from the ones in the class XVII fungal myosins. They bind protein phosphatase 1 catalytic subunits 1alpha/PPP1CA and 1gamma/PPP1CC. Human Myo16 interacts with ACOT9, ARHGAP26 and PIK3R2 and with components of the WAVE1 complex, CYFIP1 and NCKAP1. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276844 [Multi-domain]  Cd Length: 656  Bit Score: 313.68  E-value: 7.53e-92
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYR---GKKRHEIPPHIYAISETAYRSMLQDREDQSIL 175
Cdd:cd14878      1 SSLLYEIQKRFGNNQIYTFIGDILLLVNPYKELPIYSTMVSQLYLsssGQLCSSLPPHLFSCAERAFHQLFQERRPQCFI 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  176 CTGESGAGKTENTKKVIQYLAHVASSHKGrkehtapgELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINF-DVAG 254
Cdd:cd14878     81 LSGERGSGKTEASKQIMKHLTCRASSSRT--------TFDSRFKHVNCILEAFGHAKTTLNDLSSCFIKYFELQFcERKK 152
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  255 YIVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGnlpIPGQ-------QDREIFQ 327
Cdd:cd14878    153 HLTGARIYTYMLEKSRLVSQPPGQSNFLIFYLLMDGLSAEEKYGLHLNNLCAHRYLNQT---MREDvstaersLNREKLA 229
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  328 ETMESMKIMGFNHEEIMSMLKMVSAVLQFGNIVFRKERNTDQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDY 407
Cdd:cd14878    230 VLKQALNVVGFSSLEVENLFVILSAILHLGDIRFTALTEADSAFVSDLQLLEQVAGMLQVSTDELASALTTDIQYFKGDM 309
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  408 VQKAQTKEQADFAVEALAKALYERLFRWLVHRINKAL---DRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQ 484
Cdd:cd14878    310 IIRRHTIQIAEFYRDLLAKSLYSRLFSFLVNTVNCCLqsqDEQKSMQTLDIGILDIFGFEEFQKNEFEQLCVNMTNEKMH 389
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  485 QLFNHTMFVLEQEEYQREGIewnfidfgldlqpCIDLIERPAN-----------PPGVLSLLDEECWFPKATDKSFVEKV 553
Cdd:cd14878    390 HYINEVLFLQEQTECVQEGV-------------TMETAYSPGNqtgvldfffqkPSGFLSLLDEESQMIWSVEPNLPKKL 456
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  554 --IQELGNHPKFQKPRQ-------LRDK-ADLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELwkdvd 623
Cdd:cd14878    457 qsLLESSNTNAVYSPMKdgngnvaLKDQgTAFTVMHYAGRVMYEIVGAIEKNKDSLSQNLLFVMKTSENVVINHL----- 531
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  624 rivgldqvsgmgemsFGSSYKTkkgmfrTVGQLYKeSLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNG 703
Cdd:cd14878    532 ---------------FQSKLVT------IASQLRK-SLADIIGKLQKCTPHFIHCIKPNNSKLPDTFDNFYVSAQLQYIG 589
                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1785379715  704 VLEGIRICRQGFPNRIVFQEFRQRYEILTPNAI-PKGFMDGKQACAIMIRALELDPnlYRIGQSKIFFR 771
Cdd:cd14878    590 VLEMVKIFRYGYPVRLSFSDFLSRYKPLADTLLgEKKKQSAEERCRLVLQQCKLQG--WQMGVRKVFLK 656
MYSc_Myo24A cd14937
class XXIV A myosin, motor domain; These myosins have a 1-2 IQ motifs in their neck and a ...
99-771 1.67e-91

class XXIV A myosin, motor domain; These myosins have a 1-2 IQ motifs in their neck and a coiled-coil region in their C-terminal tail. The function of the class XXIV myosins remain elusive. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276897  Cd Length: 637  Bit Score: 311.95  E-value: 1.67e-91
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQivemYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTG 178
Cdd:cd14937      1 AEVLNMLALRYKKNYIYTIAEPMLISINPYQVIDVDINE----YKNKNTNELPPHVYSYAKDAMTDFINTKTNQSIIISG 76
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  179 ESGAGKTENTKKVIQYLAhvasshKGRKEHTapgELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVG 258
Cdd:cd14937     77 ESGSGKTEASKLVIKYYL------SGVKEDN---EISNTLWDSNFILEAFGNAKTLKNNNSSRYGKYIKIELDEYQNIVS 147
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  259 ANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGNLPIPGQQDREIFQETMESMKIMGF 338
Cdd:cd14937    148 SSIEIFLLENIRVVSQEEEERGYHIFYQIFNGMSQELKNKYKIRSENEYKYIVNKNVVIPEIDDAKDFGNLMISFDKMNM 227
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  339 nHEEIMSMLKMVSAVLQFGNIVFR---KERNTDQASMPDNT--AAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQT 413
Cdd:cd14937    228 -HDMKDDLFLTLSGLLLLGNVEYQeieKGGKTNCSELDKNNleLVNEISNLLGINYENLKDCLVFTEKTIANQKIEIPLS 306
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  414 KEQADFAVEALAKALYERLFRWLVHRINKALDRTKrQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFV 493
Cdd:cd14937    307 VEESVSICKSISKDLYNKIFSYITKRINNFLNNNK-ELNNYIGILDIFGFEIFSKNSLEQLLINIANEEIHSIYLYIVYE 385
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  494 LEQEEYQREGIEWNFIDFGLDlQPCIDLIERPANppgVLSLLDEECWFPKATDKSFVEKVIQELGNHPKFQKPRQLRDKa 573
Cdd:cd14937    386 KETELYKAEDILIESVKYTTN-ESIIDLLRGKTS---IISILEDSCLGPVKNDESIVSVYTNKFSKHEKYASTKKDINK- 460
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  574 DLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVDRIVGLDQVSGMgemsfgsSYKtkkgmfrtv 653
Cdd:cd14937    461 NFVIKHTVSDVTYTITNFISKNKDILPSNIVRLLKVSNNKLVRSLYEDVEVSESLGRKNLI-------TFK--------- 524
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  654 gqlYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRIcRQGFPNRIVFQEFRQRYEILTP 733
Cdd:cd14937    525 ---YLKNLNNIISYLKSTNIYFIKCIKPNENKEKNNFNQKKVFPQLFSLSIIETLNI-SFFFQYKYTFDVFLSYFEYLDY 600
                          650       660       670
                   ....*....|....*....|....*....|....*...
gi 1785379715  734 NAIPKGFMDGKQACAIMIRAlELDPNLYRIGQSKIFFR 771
Cdd:cd14937    601 STSKDSSLTDKEKVSMILQN-TVDPDLYKVGKTMVFLK 637
MYSc_Myo23 cd14884
class XXIII myosin, motor domain; These myosins are predicted to have a neck region with 1-2 ...
99-723 5.96e-78

class XXIII myosin, motor domain; These myosins are predicted to have a neck region with 1-2 IQ motifs and a single MyTH4 domain in its C-terminal tail. The lack of a FERM domain here is odd since MyTH4 domains are usually found alongside FERM domains where they bind to microtubules. At any rate these Class XXIII myosins are still proposed to function in the apicomplexan microtubule cytoskeleton. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276850 [Multi-domain]  Cd Length: 685  Bit Score: 273.71  E-value: 5.96e-78
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMYRGKKRHE-------IPPHIYAISETAYRSMLQDRE 170
Cdd:cd14884      1 PNVLQNLKNRYLKNKIYTFHASLLLALNPYKPLKeLYDQDVMNVYLHKKSNSaasaapfPKAHIYDIANMAYKNMRGKLK 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  171 DQSILCTGESGAGKTENTKKVIQYLAHVasshKGRKEHTapgELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINF 250
Cdd:cd14884     81 RQTIVVSGHSGSGKTENCKFLFKYFHYI----QTDSQMT---ERIDKLIYINNILESMSNATTIKNNNSSRCGRINLLIF 153
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  251 D---------VAGYIVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAG-AGEHMKTDLLLEGFNQYRFLSN-------- 312
Cdd:cd14884    154 EeventqknmFNGCFRNIKIKILLLEINRCIAHNFGERNFHVFYQVLRGlSDEDLARRNLVRNCGVYGLLNPdeshqkrs 233
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  313 --GNLPIPG----------QQDREIFQETMESMKIMGFNHEEIMSMLKMVSAVLQFGNIVFRKerntdqasmpdntaaqk 380
Cdd:cd14884    234 vkGTLRLGSdsldpseeekAKDEKNFVALLHGLHYIKYDERQINEFFDIIAGILHLGNRAYKA----------------- 296
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  381 LCHLLGLNVTEFSRAILMPRIKVGRDYVQKAQTKEQADFAVEALAKALYERLFRWLVHRINKALDRTKRQGA-------- 452
Cdd:cd14884    297 AAECLQIEEEDLENVIKYKNIRVSHEVIRTERRKENATSTRDTLIKFIYKKLFNKIIEDINRNVLKCKEKDEsdnediys 376
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  453 ---SFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGlDLQPCIDLIERpanpp 529
Cdd:cd14884    377 ineAIISILDIYGFEELSGNDFDQLCINLANEKLNNYYINNEIEKEKRIYARENIICCSDVAP-SYSDTLIFIAK----- 450
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  530 gVLSLLDE-----ECWFPKATDKSFV-----EKVIQELGNH------PKFQK---PRQLRDKADLCIIHYAGKVDYKADE 590
Cdd:cd14884    451 -IFRRLDDitklkNQGQKKTDDHFFRyllnnERQQQLEGKVsygfvlNHDADgtaKKQNIKKNIFFIRHYAGLVTYRINN 529
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  591 WLMKNMDPLNDNVATLLHQSTDKYTAElwkdvdrivgldqvsgmgemsfgSSYKTKKGMFRTVGQLYKESLSKLMSTLRN 670
Cdd:cd14884    530 WIDKNSDKIETSIETLISCSSNRFLRE-----------------------ANNGGNKGNFLSVSKKYIKELDNLFTQLQS 586
                          650       660       670       680       690
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1785379715  671 TNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQE 723
Cdd:cd14884    587 TDMYYIRCFLPNAKMLPNTFKRLLVYRQLKQCGSNEMIKILNRGLSHKIPKKE 639
MYSc_Myo20 cd14881
class XX myosin, motor domain; These class 20 myosins are primarily insect myosins with such ...
100-758 1.21e-76

class XX myosin, motor domain; These class 20 myosins are primarily insect myosins with such members as Drosophila, Daphnia, and mosquitoes. These myosins contain a single IQ motif in the neck region. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276847 [Multi-domain]  Cd Length: 633  Bit Score: 268.52  E-value: 1.21e-76
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYknlpiyteqiveMYRGKKRHEIPPHIYA-------ISETAYRSMLQDREDQ 172
Cdd:cd14881      2 AVMKCLQARFYAKEFFTNVGPILLSVNPY------------RDVGNPLTLTSTRSSPlapqllkVVQEAVRQQSETGYPQ 69
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  173 SILCTGESGAGKTENTKKVIQYLAHVASshkGRKEHTApgeLEHqLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFdV 252
Cdd:cd14881     70 AIILSGTSGSGKTYASMLLLRQLFDVAG---GGPETDA---FKH-LAAAFTVLRSLGSAKTATNSESSRIGHFIEVQV-T 141
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  253 AGYIVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFN--QYRFLSNGNLPIPGQQDREIFQETM 330
Cdd:cd14881    142 DGALYRTKIHCYFLDQTRVIRPLPGEKNYHIFYQMLAGLSQEERVKLHLDGYSpaNLRYLSHGDTRQNEAEDAARFQAWK 221
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  331 ESMKIMGFNHEEIMSMLkmvSAVLQFGNIVFrKERNTDQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQK 410
Cdd:cd14881    222 ACLGILGIPFLDVVRVL---AAVLLLGNVQF-IDGGGLEVDVKGETELKSVAALLGVSGAALFRGLTTRTHNARGQLVKS 297
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  411 AQTKEQADFAVEALAKALYERLFRWLVHRINKaldrTKRQGAS--------FIGILDIAGFEIFELNSFEQLCINYTNEK 482
Cdd:cd14881    298 VCDANMSNMTRDALAKALYCRTVATIVRRANS----LKRLGSTlgthatdgFIGILDMFGFEDPKPSQLEHLCINLCAET 373
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  483 LQQLFNHTMFVLEQEEYQREGIEWNF-IDFgLDLQPCIDLIErpANPPGVLSLLDEECwFPKATDKSFVEKVIQELGNHP 561
Cdd:cd14881    374 MQHFYNTHIFKSSIESCRDEGIQCEVeVDY-VDNVPCIDLIS--SLRTGLLSMLDVEC-SPRGTAESYVAKIKVQHRQNP 449
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  562 KFQKPRQLRDKAdLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTdkytaelwkdvdrivgldqvsgmgeMSFGs 641
Cdd:cd14881    450 RLFEAKPQDDRM-FGIRHFAGRVVYDASDFLDTNRDVVPDDLVAVFYKQN-------------------------CNFG- 502
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  642 syktkkgmFRTVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVF 721
Cdd:cd14881    503 --------FATHTQDFHTRLDNLLRTLVHARPHFVRCIRSNTTETPNHFDRGTVVRQIRSLQVLETVNLMAGGYPHRMRF 574
                          650       660       670
                   ....*....|....*....|....*....|....*....
gi 1785379715  722 QEFRQRYEILTPNAIPKGFMDGKQACA--IMIRALELDP 758
Cdd:cd14881    575 KAFNARYRLLAPFRLLRRVEEKALEDCalILQFLEAQPP 613
MYSc_Myo44 cd14905
class XLIV myosin, motor domain; There is little known about the function of the myosin XLIV ...
100-724 4.17e-73

class XLIV myosin, motor domain; There is little known about the function of the myosin XLIV class. Members here include cellular slime mold Polysphondylium and soil-living amoeba Dictyostelium. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276870  Cd Length: 673  Bit Score: 259.25  E-value: 4.17e-73
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYTEQIVEMYrgKKRHEIPPHIYAISETAYRSMLQDREDQSILCTG 178
Cdd:cd14905      2 TLINIIQARYKKEIIYTYIGPILVSVNPLRYLPfLHSQELVRNY--NQRRGLPPHLFALAAKAISDMQDFRRDQLIFIGG 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  179 ESGAGKTENTKKVIQYLAhvaSSHKGRKEHtapgeLEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVG 258
Cdd:cd14905     80 ESGSGKSENTKIIIQYLL---TTDLSRSKY-----LRDYILESGIILESFGHASTDSNHNSSRWGKYFEMFYSLYGEIQG 151
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  259 ANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSN-GNLPIPGQQDREIFQETMESMKIMG 337
Cdd:cd14905    152 AKLYSYFLDENRVTYQNKGERNFHIFYQFLKGITDEEKAAYQLGDINSYHYLNQgGSISVESIDDNRVFDRLKMSFVFFD 231
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  338 FNHEEIMSMLKMVSAVLQFGNIVFRKERNtdQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYVQKAqtkeqa 417
Cdd:cd14905    232 FPSEKIDLIFKTLSFIIILGNVTFFQKNG--KTEVKDRTLIESLSHNITFDSTKLENILISDRSMPVNEAVENR------ 303
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  418 dfavEALAKALYERLFRWLVHRINKALDRTkrQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFVLEQE 497
Cdd:cd14905    304 ----DSLARSLYSALFHWIIDFLNSKLKPT--QYSHTLGILDLFGQESSQLNGYEQFSINFLEERLQQIYLQTVLKQEQR 377
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  498 EYQREGIEW-NFIDFGlDLQPCIDLIERpanppgVLSLLDEECWFPKATDKSFVEKVIQELGNHPKF-QKPRQLRdkadl 575
Cdd:cd14905    378 EYQTERIPWmTPISFK-DNEESVEMMEK------IINLLDQESKNINSSDQIFLEKLQNFLSRHHLFgKKPNKFG----- 445
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  576 cIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKY-------------TAELWKDVD----------RIV------ 626
Cdd:cd14905    446 -IEHYFGQFYYDVRGFIIKNRDEILQRTNVLHKNSITKYlfsrdgvfninatVAELNQMFDakntakksplSIVkvllsc 524
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  627 ------------------GLDQVSGMGEMSFGSSYKTKKGMFRTVGQlykeslsklmstlRNTNPNFVRCIIPNHEKKAG 688
Cdd:cd14905    525 gsnnpnnvnnpnnnsgggGGGGNSGGGSGSGGSTYTTYSSTNKAINN-------------SNCDFHFIRCIKPNSKKTHL 591
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|
gi 1785379715  689 KLEPHLVLDQLRCNGVLEGIRICRQGFP----NRIVFQEF 724
Cdd:cd14905    592 TFDVKSVNEQIKSLCLLETTRIQRFGYTihynNKIFFDRF 631
MYSc_Myo12 cd14874
class XXXIII myosin, motor domain; Little is known about the XXXIII class of myosins. They ...
99-736 4.22e-70

class XXXIII myosin, motor domain; Little is known about the XXXIII class of myosins. They are found predominately in nematodes. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276841 [Multi-domain]  Cd Length: 628  Bit Score: 249.02  E-value: 4.22e-70
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYrgkkrheippHIYAISETAYRSMLQDRED-QSILCT 177
Cdd:cd14874      1 AGIAQNLHERFKKGQTYTKASNVLVFVNDFNKLSIQDQLVIKKC----------HISGVAENALDRIKSMSSNaESIVFG 70
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  178 GESGAGKTENTKKVIQYLAHVASSHKGRKEHTApgelehqllqANPILEAFGNAKTVKNDNSSRFGKFIRINFDvAGYIV 257
Cdd:cd14874     71 GESGSGKSYNAFQVFKYLTSQPKSKVTTKHSSA----------IESVFKSFGCAKTLKNDEATRFGCSIDLLYK-RNVLT 139
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  258 GANIE-TYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGNLPIPGQQDREIFQETMESMKIM 336
Cdd:cd14874    140 GLNLKyTVPLEVPRVISQKPGERNFNVFYEVYHGLNDEMKAKFGIKGLQKFFYINQGNSTENIQSDVNHFKHLEDALHVL 219
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  337 GFNHEEIMSMLKMVSAVLQFGNIVFRKERNTD---QASMPDNTAAQK-LCHLLGLNVTEFSrAILMPRIKVGrdyvqKAQ 412
Cdd:cd14874    220 GFSDDHCISIYKIISTILHIGNIYFRTKRNPNveqDVVEIGNMSEVKwVAFLLEVDFDQLV-NFLLPKSEDG-----TTI 293
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  413 TKEQADFAVEALAKALYERLFRWLVHRINKALDRTKRQGAsfIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMF 492
Cdd:cd14874    294 DLNAALDNRDSFAMLIYEELFKWVLNRIGLHLKCPLHTGV--ISILDHYGFEKYNNNGVEEFLINSVNERIENLFVKHSF 371
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  493 VLEQEEYQREGIEWNF-IDFGLDLQPCIDLIERpaNPPGVLSLLDEECWFPKATDKSFVEKVIQELGNHPKFQKPRQlRD 571
Cdd:cd14874    372 HDQLVDYAKDGISVDYkVPNSIENGKTVELLFK--KPYGLLPLLTDECKFPKGSHESYLEHCNLNHTDRSSYGKARN-KE 448
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  572 KADLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELwkdvdrivgldqvsgmgemsFGSSYKTKKGMFR 651
Cdd:cd14874    449 RLEFGVRHCIGTTWYNVTDFFSRNKRIISLSAVQLLRSSKNPIIGLL--------------------FESYSSNTSDMIV 508
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  652 TVGQLYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEIL 731
Cdd:cd14874    509 SQAQFILRGAQEIADKINGSHAHFVRCIKSNNERQPKKFDIPLVNRQIKNLLLAELLSFRIKGYPVKISKTTFARQYRCL 588

                   ....*
gi 1785379715  732 TPNAI 736
Cdd:cd14874    589 LPGDI 593
MYSc_Myo32 cd14893
class XXXII myosin, motor domain; Class XXXII myosins do not contain any IQ motifs, but ...
102-729 8.91e-66

class XXXII myosin, motor domain; Class XXXII myosins do not contain any IQ motifs, but possess tandem MyTH4 and FERM domains. The myosin classes XXX to XXXIV contain members from Phytophthora species and Hyaloperonospora parasitica. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276858  Cd Length: 741  Bit Score: 239.10  E-value: 8.91e-66
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  102 LHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYT----------EQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDRED 171
Cdd:cd14893      4 LYTLRARYRMEQVYTWVDRVLVGVNPVTPLPIYTpdhmqaynksREQTPLYEKDTVNDAPPHVFALAQNALRCMQDAGED 83
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  172 QSILCTGESGAGKTENTKKVIQYLAHVASS----HKGRKEHTAPGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIR 247
Cdd:cd14893     84 QAVILLGGMGAGKSEAAKLIVQYLCEIGDEteprPDSEGASGVLHPIGQQILHAFTILEAFGNAATRQNRNSSRFAKMIS 163
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  248 INFDVAGYIVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAgEH---MKTDLLL-EGFNQYRFLSN-----GNLPIp 318
Cdd:cd14893    164 VEFSKHGHVIGGGFTTHYFEKSRVIDCRSHERNFHVFYQVLAGV-QHdptLRDSLEMnKCVNEFVMLKQadplaTNFAL- 241
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  319 gqqDREIFQETMESMKIMGFNHEEIMSMLKMVSAVLQFGNIVF-------------RKERNTDQASMPDNTAAQKL--CH 383
Cdd:cd14893    242 ---DARDYRDLMSSFSALRIRKNQRVEIVRIVAALLHLGNVDFvpdpeggksvggaNSTTVSDAQSCALKDPAQILlaAK 318
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  384 LLGLNVTEFSRaILMPRIKVGRDYVQ-----KAQTKEQADFAVEALAKALYERLFRWLVHRINKAL----DRTKRQG--- 451
Cdd:cd14893    319 LLEVEPVVLDN-YFRTRQFFSKDGNKtvsslKVVTVHQARKARDTFVRSLYESLFNFLVETLNGILggifDRYEKSNivi 397
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  452 -ASFIGILDIAGFEIFE--LNSFEQLCINYTNEKLQQLF-NHTMFV----LEQEEYQREG--IEWNFIDFGLDLQPCIDL 521
Cdd:cd14893    398 nSQGVHVLDMVGFENLTpsQNSFDQLCFNYWSEKVHHFYvQNTLAInfsfLEDESQQVENrlTVNSNVDITSEQEKCLQL 477
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  522 IERPanPPGVLSLLDEECWFPKATDKSFVEKVIQ-----------ELGNHPKFQKPRQLRDKADLCII-HYAGKVDYKAD 589
Cdd:cd14893    478 FEDK--PFGIFDLLTENCKVRLPNDEDFVNKLFSgneavgglsrpNMGADTTNEYLAPSKDWRLLFIVqHHCGKVTYNGK 555
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  590 EWLMKNMDPLNDNVATLLHQSTDKytaelwkdVDRIVGLDQVSGMGEMSFGSSY---KTKKGMFRTVGQLYKESLS---- 662
Cdd:cd14893    556 GLSSKNMLSISSTCAAIMQSSKNA--------VLHAVGAAQMAAASSEKAAKQTeerGSTSSKFRKSASSARESKNitds 627
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1785379715  663 ----------KLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYE 729
Cdd:cd14893    628 aatdvynqadALLHALNHTGKNFLVCIKPNETLEEGVFDSAYVMKQIRMNHLVELMQASRSIFTVHLTYGHFFRRYK 704
MYSc_Myo21 cd14882
class XXI myosin, motor domain; The myosins here are comprised of insects. Leishmania class ...
100-771 3.25e-65

class XXI myosin, motor domain; The myosins here are comprised of insects. Leishmania class XXI myosins do not group with them. Myo21, unlike other myosin proteins, contains UBA-like protein domains and has no structural or functional relationship with the myosins present in other organisms possessing cilia or flagella. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. They have diverse tails with IQ, WW, PX, and Tub domains. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276848  Cd Length: 642  Bit Score: 235.02  E-value: 3.25e-65
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTGE 179
Cdd:cd14882      2 NILEELRHRYLMGESYTFIGDILLSLNPNEIKQEYPQEFHAKYRCKSRSDNAPHIFSVADSAYQDMLHHEEPQHIILSGE 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  180 SGAGKTENTKKVIQYLAHVASSHKGRKEhtapgelehQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVGA 259
Cdd:cd14882     82 SYSGKTTNARLLIKHLCYLGDGNRGATG---------RVESSIKAILALVNAGTPLNADSTRCILQYQLTFGSTGKMSGA 152
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  260 NIETYLLEKSRAIRQAKDERTFHVFYQLLAG--AGEHMKTDLLLEGFNqYRFL--SNGNLPIPGQQDR-------EIFQE 328
Cdd:cd14882    153 IFWMYQLEKLRVSTTDGNQSNFHIFYYFYDFieAQNRLKEYNLKAGRN-YRYLriPPEVPPSKLKYRRddpegnvERYKE 231
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  329 TMESMKIMGFNHEEIMSMLKMVSAVLQFGNIVFRKerNTDQASMPDNTAAQKLCHLLGLNVTEFSRAILMPRIKVGRDYV 408
Cdd:cd14882    232 FEEILKDLDFNEEQLETVRKVLAAILNLGEIRFRQ--NGGYAELENTEIASRVAELLRLDEKKFMWALTNYCLIKGGSAE 309
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  409 QKAQTKEQADFAVEALAKALYERLFRWLVHRINKALDRTKrqgASF-----IGILDIAGFEIFELNSFEQLCINYTNEKL 483
Cdd:cd14882    310 RRKHTTEEARDARDVLASTLYSRLVDWIINRINMKMSFPR---AVFgdkysISIHDMFGFECFHRNRLEQLMVNTLNEQM 386
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  484 QQLFNHTMFV---LEQEEYQREGIEWNFIDFGLDLQPCIdlierpANPPGVLSLLDEECwfPKATDKSFVEKVIQElgNH 560
Cdd:cd14882    387 QYHYNQRIFIsemLEMEEEDIPTINLRFYDNKTAVDQLM------TKPDGLFYIIDDAS--RSCQDQNYIMDRIKE--KH 456
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  561 PKFQKPRQlrdKADLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDvdrivglDQVSGMgemsfg 640
Cdd:cd14882    457 SQFVKKHS---AHEFSVAHYTGRIIYDAREFADKNRDFVPPEMIETMRSSLDESVKLMFTN-------SQVRNM------ 520
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  641 ssyKTKKGMFRTVgqlykeSLSKLMSTLRNTNP---NFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGIRICRQGFPN 717
Cdd:cd14882    521 ---RTLAATFRAT------SLELLKMLSIGANSggtHFVRCIRSDLEYKPRGFHSEVVRQQMRALAVLDTAKARQKGFSY 591
                          650       660       670       680       690
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1785379715  718 RIVFQEFRQRYEILTPNAIPKGFMDgKQACAIMIRALELDPnlYRIGQSKIFFR 771
Cdd:cd14882    592 RIPFQEFLRRYQFLAFDFDETVEMT-KDNCRLLLIRLKMEG--WAIGKTKVFLK 642
Motor_domain cd01363
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ...
121-255 2.80e-59

Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.


Pssm-ID: 276814 [Multi-domain]  Cd Length: 170  Bit Score: 201.80  E-value: 2.80e-59
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  121 FCVVINPYKNLPIYTEQIV-EMYRGKKRHEIPPHIYAISETAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVA 199
Cdd:cd01363      1 VLVRVNPFKELPIYRDSKIiVFYRGFRRSESQPHVFAIADPAYQSMLDGYNNQSIFAYGESGAGKTETMKGVIPYLASVA 80
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1785379715  200 SSHKGRKEHTA-------PGELEHQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGY 255
Cdd:cd01363     81 FNGINKGETEGwvylteiTVTLEDQILQANPILEAFGNAKTTRNENSSRFGKFIEILLDIAGF 143
MYSc_Myo24B cd14938
class XXIV B myosin, motor domain; These myosins have a 1-2 IQ motifs in their neck and a ...
100-769 2.72e-55

class XXIV B myosin, motor domain; These myosins have a 1-2 IQ motifs in their neck and a coiled-coil region in their C-terminal tail. The functions of these myosins remain elusive. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276898 [Multi-domain]  Cd Length: 713  Bit Score: 207.00  E-value: 2.72e-55
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYTEQIVEMYR-GKKRHEIPPHIYAISETAYRSMLQDREDQSILCTG 178
Cdd:cd14938      2 SVLYHLKERFKNNKFYTKMGPLLIFINPKINNNINNEETIEKYKcIDCIEDLSLNEYHVVHNALKNLNELKRNQSIIISG 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  179 ESGAGKTENTKKVIQYLAHVASSHKGRKEHTAP---------------GELEHQLLQANPILEAFGNAKTVKNDNSSRFG 243
Cdd:cd14938     82 ESGSGKSEIAKNIINFIAYQVKGSRRLPTNLNDqeednihneentdyqFNMSEMLKHVNVVMEAFGNAKTVKNNNSSRFS 161
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  244 KFIRINFDvAGYIVGANIETYLLEKSRAIRQAKDERTFHVFYQLLAGAGEHMKTDLLLEGFNQYRFLSNGNLPIPGQQDR 323
Cdd:cd14938    162 KFCTIHIE-NEEIKSFHIKKFLLDKERLINRKANENSFNIFYYIINGSSDKFKKMYFLKNIENYSMLNNEKGFEKFSDYS 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  324 EIFQETMESMKIMGFNHEEIMSMLKMVSAVLQFGNI----VFRKE----------------------RNTDQASMPDNTA 377
Cdd:cd14938    241 GKILELLKSLNYIFDDDKEIDFIFSVLSALLLLGNTeivkAFRKKsllmgknqcgqninyetilselENSEDIGLDENVK 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  378 AQKL-CHLLGLNVTEFSRAILMPRIkVGRDYVQKAQTKEQADFAVEALAKALYERLFRWLVHRINKALDRTKR--QGASF 454
Cdd:cd14938    321 NLLLaCKLLSFDIETFVKYFTTNYI-FNDSILIKVHNETKIQKKLENFIKTCYEELFNWIIYKINEKCTQLQNinINTNY 399
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  455 IGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIEWNFIDFGLDLQPCIDLIERPANppGVLSL 534
Cdd:cd14938    400 INVLDMAYFENSKDNSLEQLLINTTNEEIIKIKNDCLYKKRVLSYNEDGIFCEYNSENIDNEPLYNLLVGPTE--GSLFS 477
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  535 LDEECWFPKATDKS-FVEKVIQELGNHPKF-QKPRQLRDKADLCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTD 612
Cdd:cd14938    478 LLENVSTKTIFDKSnLHSSIIRKFSRNSKYiKKDDITGNKKTFVITHSCGDIIYNAENFVEKNIDILTNRFIDMVKQSEN 557
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  613 KYTAELWKDVDRIVGLDQVSGMGEMSFGSSYKTKKGMFRTVGQ----LYKESLSKLMSTLRNTNPNFVRCIIPNHEKKA- 687
Cdd:cd14938    558 EYMRQFCMFYNYDNSGNIVEEKRRYSIQSALKLFKRRYDTKNQmavsLLRNNLTELEKLQETTFCHFIVCMKPNESKREl 637
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  688 GKLEPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPnaipkgfmDGKQACAIMIRALELDPNLYRIGQSK 767
Cdd:cd14938    638 CSFDANIVLRQVRNFSIVEASQLKVGYYPHKFTLNEFLSIFDIKNE--------DLKEKVEALIKSYQISNYEWMIGNNM 709

                   ..
gi 1785379715  768 IF 769
Cdd:cd14938    710 IF 711
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
1014-1885 2.64e-30

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 131.38  E-value: 2.64e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1014 TMAEEEEKVKSLNKLrnkyEAVIADLEDRLKKEEKGRQEMEKMKRKldgETTDLQDQLLELQQQIEELKQQLARKEEELQ 1093
Cdd:COG1196    177 AERKLERTEENLERL----EDLLEELEKQLEKLERQAEKAERYQEL---KAELRELELALLLAKLKELRKELEELEEELS 249
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1094 AALARVDDEVGQKNNLLKQLRDLQSQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRAKRE 1173
Cdd:COG1196    250 RLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELK 329
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1174 QEVTDLKKTIEEdvkvRDAQVTEMRQRHNQVVEEISEQLEQARRFKGNLEKVKQTLESENTDLIKEVKNLQAAKQDSEQR 1253
Cdd:COG1196    330 EKIEALKEELEE----RETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKRE 405
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1254 RKKLEQQVSEFQIRTNEsekvkfeLAEKLQKLQAELDGVSGALGSTEGKSIKLTKDLSTVQSQLQDTQELLQEETRQKLN 1333
Cdd:COG1196    406 IESLEERLERLSERLED-------LKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQR 478
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1334 FSSRVRQLEEEKNNLMENLEEEESAKAQLSRQLQALQQQLLESKKRMEDQGGMVEAMEEAKKKSykelefLQQRFDEKHQ 1413
Cdd:COG1196    479 LEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELIKVKEKYETALEAALGNR------LQAVVVENEE 552
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1414 INDK----LEKTR---------NRLQQELDDLMVDLDHQRQIVSNLEKKQKKFD-------------QMLAEEKNISARY 1467
Cdd:COG1196    553 VAKKaiefLKENKagratflplDRIKPLRSLKSDAAPGFLGLASDLIDFDPKYEpavrfvlgdtlvvDDLEQARRLARKL 632
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1468 GEERDRAEAEAREKETKALSLSRALEEAIDLKDEldRQNKQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQVQEMKTQ 1547
Cdd:COG1196    633 RIKYRIVTLDGDLVEPSGSITGGSRNKRSSLAQK--RELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQ 710
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1548 IEELEDELQAiedgklrlevnmqamkaqferdLQNRDDSNDEKKKLLFKQVREMEVELEEERKQKSQILAAKKKLEMDLQ 1627
Cdd:COG1196    711 LEELERQLEE----------------------LKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELE 768
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1628 dmesqmdsankgrdEAVKQLKKLQLQFKEVWREVEETRAARDEIFVQSRDNEKKLKSLEAELLQLQEDLAAAERAKRQAQ 1707
Cdd:COG1196    769 --------------SLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELE 834
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1708 QERDDLADELSNGVSGKSALLDEKRALEMRISQLEEELDEEQSNTELINDRYRKLTLQVETITTELSAERSFSQKAENAR 1787
Cdd:COG1196    835 EEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERL 914
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1788 QQMERQNKELKVKLNEMDSTMRSKYKITI-ASLEAKISQLEEQMEQESKERIIANKLVRRAEKRLKEVLLQVEEERRNAD 1866
Cdd:COG1196    915 EELEAKLERLEVELPELEEELEEEYEDTLeTELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKE 994
                          890
                   ....*....|....*....
gi 1785379715 1867 QFKEQLEKanirMKQLKRQ 1885
Cdd:COG1196    995 KLLEVIEE----LDKEKRE 1009
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
1127-1943 4.16e-27

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 120.97  E-value: 4.16e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1127 LESEKAARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQElRAKREQEVTDLKKTIEEDVKVRDaqvtemRQRHNQVVE 1206
Cdd:COG1196    170 YKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAE-KAERYQELKAELRELELALLLAK------LKELRKELE 242
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1207 EISEQLEQARR-------FKGNLEKVKQTLESENTDLIKEVKNLQAAKQDSEQRRKKLEQQVSEFQIRTNESEKVKFELA 1279
Cdd:COG1196    243 ELEEELSRLEEeleelqeELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELE 322
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1280 EKLQKLQAELDGVSGALGSTEGKSIKLT---KDLSTVQSQLQDTQE-LLQEETRQKLNFSSRVRQLEEEKNNLMENLEEE 1355
Cdd:COG1196    323 ERLEELKEKIEALKEELEERETLLEELEqllAELEEAKEELEEKLSaLLEELEELFEALREELAELEAELAEIRNELEEL 402
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1356 ESAKAQLSRQLQALQQQLLESKKRMEDQGGMVEAMEEAKKKSYKELEFLQQRFDEKHQINDKLEKTRNRLQQELDDLMVD 1435
Cdd:COG1196    403 KREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKE 482
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1436 LDHQRQIVSNLEKKQKKFDQMLAEEKNISARYGEERDRAEAEAREKETKALSLSRAleeaidlkdeldrqnkqLRAEMDD 1515
Cdd:COG1196    483 LSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELIKVKEKYETALEAA-----------------LGNRLQA 545
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1516 LVSSKDDVGKNVHELERSKRALEQQVQEMKTqIEELEDELQAIEDGKLRLEVNMQAMKAQFERDLQ----------NRDD 1585
Cdd:COG1196    546 VVVENEEVAKKAIEFLKENKAGRATFLPLDR-IKPLRSLKSDAAPGFLGLASDLIDFDPKYEPAVRfvlgdtlvvdDLEQ 624
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1586 SNDEKKKLLFKQVREMEVELEEE--------RKQKSQILAAKKKLEmdlqDMESQMDSANKGRDEAVKQLKKLQLQFKEV 1657
Cdd:COG1196    625 ARRLARKLRIKYRIVTLDGDLVEpsgsitggSRNKRSSLAQKRELK----ELEEELAELEAQLEKLEEELKSLKNELRSL 700
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1658 WREVEETRAARDEIFVQSRDNEKKLKSLEAELLQLQEDLAAAERAKRQAQQERDDLADELSNGVSGKSALLDEKRALEMR 1737
Cdd:COG1196    701 EDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEE 780
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1738 ISQLEEELDEEQSNTELINDRYRKLTLQVETITTELSAERSFSQKAENARQQMERQNKELKVKLNEMDStmrskykiTIA 1817
Cdd:COG1196    781 IEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEE--------ELE 852
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1818 SLEAKISQLEEQMEQESKERIIANKLVRRAEKRLKEVLLQVEEERRNADQFKEQLEKANIRMKQLKRQLeeaEEEASRAN 1897
Cdd:COG1196    853 ELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKL---ERLEVELP 929
                          810       820       830       840
                   ....*....|....*....|....*....|....*....|....*.
gi 1785379715 1898 SNRRRLQRELEDVTEsaesmnrevTTLRSRLSKLERQQRKRAPIQF 1943
Cdd:COG1196    930 ELEEELEEEYEDTLE---------TELEREIERLEEEIEALGPVNL 966
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
861-1713 2.48e-26

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 118.24  E-value: 2.48e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  861 LQKVKD------TQVKTESELKEMANKYQQLFEEKSILaeQLQAETELFAEAEEMRARLASKKQELEEILHDLEARVEEE 934
Cdd:TIGR02168  188 LDRLEDilneleRQLKSLERQAEKAERYKELKAELREL--ELALLVLRLEELREELEELQEELKEAEEELEELTAELQEL 265
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  935 EERTLQLQNEKKKMHQHIQDLEEQLEEEEGARQKLQLEKVTTESRLKKMEEDILLLEDQNAKLAKERKLLddrigeftst 1014
Cdd:TIGR02168  266 EEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDEL---------- 335
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1015 maeeEEKVKSLNKLRNKYEAVIADLEDRLKKEEKGRQEMEKMKRKLDGETTDLQDQLLELQQQIEELKQQLARKEEELQA 1094
Cdd:TIGR02168  336 ----AEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER 411
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1095 ALARVDDEVGQKNNLLKQLRDlqSQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTELEdtldstAAQQELRAKREQ 1174
Cdd:TIGR02168  412 LEDRRERLQQEIEELLKKLEE--AELKELQAELEELEEELEELQEELERLEEALEELREELE------EAEQALDAAERE 483
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1175 evtdlkktiEEDVKVRDAQVTEMRQRHNQVVEEISEQLEQARRFKGNLEKVKQTLESEN--------------TDLIkeV 1240
Cdd:TIGR02168  484 ---------LAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEgyeaaieaalggrlQAVV--V 552
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1241 KNLQAAKQDSEQRRKKLEQQVSEFQIRTNESEKVKFELAEKLQklqaELDGVSGALGSTEGKSIKLTKDLSTVQSQLQDT 1320
Cdd:TIGR02168  553 ENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILK----NIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVV 628
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1321 QELLQE-ETRQKLNFSSRVRQLEEEKNNLMENLeeeesakaqlsrqlqalqqqlleSKKRMEDQGGMVEAMEEAKKKSyK 1399
Cdd:TIGR02168  629 DDLDNAlELAKKLRPGYRIVTLDGDLVRPGGVI-----------------------TGGSAKTNSSILERRREIEELE-E 684
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1400 ELEFLQQRFDEKHQINDKLEKTRNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYGEERDRAEAEAR 1479
Cdd:TIGR02168  685 KIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE 764
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1480 EKETKALSLSRALEEAIDLKDELDRQNKQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQVQEMKTQIEELEDELQAIE 1559
Cdd:TIGR02168  765 ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLE 844
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1560 DGKLRLEVNMQAMKAQFERDLQNRDDSNDEKKKLLfkqvremeveleeerKQKSQILAAKKKLEMDLQDMESQMDSANKG 1639
Cdd:TIGR02168  845 EQIEELSEDIESLAAEIEELEELIEELESELEALL---------------NERASLEEALALLRSELEELSEELRELESK 909
                          810       820       830       840       850       860       870
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1785379715 1640 RDEAVKQLKKLQLQFKEVWREVEETRAARDEIFVQSRDNEK-KLKSLEAELLQLQEDLAAAERAKRQAQQERDDL 1713
Cdd:TIGR02168  910 RSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSlTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
874-1593 3.38e-26

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 117.89  E-value: 3.38e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  874 ELKEMANKYQQLFEEKSILAEQLQAETELFAEAEEMRARLASKKQELEEILHDLEARVEEEEERTLQLQNEKKKMHQHIQ 953
Cdd:COG1196    233 KLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLE 312
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  954 DLEEQLEEEEGARQKLQLEKVTTESRLKKMEEDILLLEDQNAKLAK----ERKLLDDRIGEFTSTMAEEEEKVKSLNKLR 1029
Cdd:COG1196    313 ELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEakeeLEEKLSALLEELEELFEALREELAELEAEL 392
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1030 NKYEAVIADLEDRLKKEEKGRQEMEKMKRKLDGETTDLQDQLLELQQQIEELKQQLARKEEELQAALARVDD---EVGQK 1106
Cdd:COG1196    393 AEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKElerELAEL 472
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1107 N----NLLKQLRDLQSQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTEL-----------------------EDTL 1159
Cdd:COG1196    473 QeelqRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELIkvkekyetaleaalgnrlqavvvENEE 552
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1160 DSTAAQQELRAKREQEVTDLKKTIEEDVKVRDAQVTEMRQRHNQVVEEISEQLEQARRFKGNLEKVKQTLESENTDLIKE 1239
Cdd:COG1196    553 VAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDAAPGFLGLASDLIDFDPKYEPAVRFVLGDTLVVDDLEQARRLARKL 632
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1240 VKNLQAAKQDSEQRRKKLEQQVSEFQIRTNESEKVKF-ELAEKLQKLQAELDGVSGALGSTEGKSIKLTKDLSTVQSQLQ 1318
Cdd:COG1196    633 RIKYRIVTLDGDLVEPSGSITGGSRNKRSSLAQKRELkELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLE 712
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1319 D-------TQELLQEETRQKLNFSSRVRQLEEEKNNLMENLEEEESAKAQLSRQLQALQQQLLESKKRMEDQGGMVEAME 1391
Cdd:COG1196    713 ElerqleeLKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQ 792
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1392 EAKKKSYKELEFLQQRFDEKHQINDKLEKTRNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYGEER 1471
Cdd:COG1196    793 EELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEK 872
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1472 DRAEAEAREKETKALSLSRALEEAIDLKDELDRQNKQLRAEMDDLVSSKDDVgknvhELERSKRALEQQVQEMKTQIEEL 1551
Cdd:COG1196    873 EELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERL-----EVELPELEEELEEEYEDTLETEL 947
                          730       740       750       760
                   ....*....|....*....|....*....|....*....|...
gi 1785379715 1552 EDELQAIEDGKLRLE-VNMQAMkAQFERDLQNRDDSNDEKKKL 1593
Cdd:COG1196    948 EREIERLEEEIEALGpVNLRAI-EEYEEVEERYEELKSQREDL 989
MYSc_Myo33 cd14894
class myosin, motor domain; Class XXXIII myosins have variable numbers of IQ domain and 2 ...
218-712 7.69e-26

class myosin, motor domain; Class XXXIII myosins have variable numbers of IQ domain and 2 tandem ANK repeats that are separated by a PH domain. The myosin classes XXX to XXXIV contain members from Phytophthora species and Hyaloperonospora parasitica. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276859 [Multi-domain]  Cd Length: 871  Bit Score: 116.38  E-value: 7.69e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  218 LLQANPILEAFGNAKTVKNDNSSRFGKF--IRINFDVAGY---IVGANIETYLLEKSRAIRQA------KDERTFHVFYQ 286
Cdd:cd14894    249 VLDSNIVLEAFGHATTSMNLNSSRFGKMttLQVAFGLHPWefqICGCHISPFLLEKSRVTSERgresgdQNELNFHILYA 328
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  287 LLAGAGEH-----MKTDLLLEGFN--QYRFLSNGNLPIPG--------QQDREIFQETMESMKIMGFNHEEIMSMLKMVS 351
Cdd:cd14894    329 MVAGVNAFpfmrlLAKELHLDGIDcsALTYLGRSDHKLAGfvskedtwKKDVERWQQVIDGLDELNVSPDEQKTIFKVLS 408
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  352 AVLQFGNIVFRKERNTDQASMPDN---TAAQKLCHLLGLNVTEFSRAILMPR---IKVGRDYVQKAQTKEQADFAVEALA 425
Cdd:cd14894    409 AVLWLGNIELDYREVSGKLVMSSTgalNAPQKVVELLELGSVEKLERMLMTKsvsLQSTSETFEVTLEKGQVNHVRDTLA 488
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  426 KALYERLFRWLVHRINKAL-------DRTKRQ---------GASFIGILDIAGFEIFELNSFEQLCINYTNEKLQqlfnh 489
Cdd:cd14894    489 RLLYQLAFNYVVFVMNEATkmsalstDGNKHQmdsnasapeAVSLLKIVDVFGFEDLTHNSLDQLCINYLSEKLY----- 563
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  490 tmfvleQEEYQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLSLLDEECWFPKAT----------DKSFVEKVIQElgN 559
Cdd:cd14894    564 ------AREEQVIAVAYSSRPHLTARDSEKDVLFIYEHPLGVFASLEELTILHQSEnmnaqqeekrNKLFVRNIYDR--N 635
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  560 HPKFQKPRQLRDKAD-----------LCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSTDKYTAELWKDVDRivgL 628
Cdd:cd14894    636 SSRLPEPPRVLSNAKrhtpvllnvlpFVIPHTRGNVIYDANDFVKKNSDFVYANLLVGLKTSNSSHFCRMLNESSQ---L 712
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  629 DQVSGMGEMSFGSSYKTKKGMFRTVGQlYKESLSKLMSTLRNTNPNFVRCIIPNHEKKAGKLEPHLVLDQLRCNGVLEGI 708
Cdd:cd14894    713 GWSPNTNRSMLGSAESRLSGTKSFVGQ-FRSHVNVLTSQDDKNMPFYFHCIRPNAKKQPSLVNNDLVEQQCRSQRLIRQM 791

                   ....
gi 1785379715  709 RICR 712
Cdd:cd14894    792 EICR 795
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
863-1687 1.98e-25

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 115.58  E-value: 1.98e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  863 KVKDTQVKTESELKEMANKYQQLFEEKSILAEQLqaetelfaEAEEMRARLASKKQELEEILHDLEARVEEEEERtlQLQ 942
Cdd:COG1196    169 KYKERKEEAERKLERTEENLERLEDLLEELEKQL--------EKLERQAEKAERYQELKAELRELELALLLAKLK--ELR 238
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  943 NEKKKMHQHIQDLEEQLEEEEGARQKLQLEKVTTESRLKKMEEDILLLEDQNAKLAKERKLLDDRIgeftstmAEEEEKV 1022
Cdd:COG1196    239 KELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEI-------SLLRERL 311
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1023 KSLNKLRNKYEAVIADLEDRLKKEEKGRQEMEKMKRKLDGETTDLQDQLLELQQQIEELKQQLARKEEELQAALARVDDE 1102
Cdd:COG1196    312 EELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAE 391
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1103 VGQKNNllkQLRDLQSQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRAKREQEVTDLKKT 1182
Cdd:COG1196    392 LAEIRN---ELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERE 468
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1183 IEEdVKVRDAQVTEMRQRHNQVVEEISEQLEQARRFKGNLEKVKQTLESENT---DLIKE-------------------- 1239
Cdd:COG1196    469 LAE-LQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGpvaELIKVkekyetaleaalgnrlqavv 547
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1240 VKNLQAAKQDSEQRRKKL----------EQQVSEFQIRTNESEKVKF--ELAEKLQKLQAELDGVSGALG--STEGKSIK 1305
Cdd:COG1196    548 VENEEVAKKAIEFLKENKagratflpldRIKPLRSLKSDAAPGFLGLasDLIDFDPKYEPAVRFVLGDTLvvDDLEQARR 627
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1306 LTKDLS------TVQSQLQDTQELLQEETRQKLNFSSRVRQLEEEKNNLMENLEEEESAKAqLSRQLQALQQQLLESKKR 1379
Cdd:COG1196    628 LARKLRikyrivTLDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEE-ELKSLKNELRSLEDLLEE 706
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1380 MEDQGGMVEAMEEAKKKSYKELEFLQQRFDEKHQindKLEKTRNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAE 1459
Cdd:COG1196    707 LRRQLEELERQLEELKRELAALEEELEQLQSRLE---ELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEE 783
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1460 EKNISARYGEERDRAEAEAREKETKALSLSRALEEAIDLKDELDRQNKQLRAEMDDLVSSKDDVGKNVHELERSKRALEQ 1539
Cdd:COG1196    784 LEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKE 863
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1540 QVQEMKTQIEELEDELQAIEDGKLRLEVNMQAMKAQFERDLQNRDDSNDEKKKLLFKQVREMEVELEEERKQKSQ-ILAA 1618
Cdd:COG1196    864 ELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEyEDTL 943
                          810       820       830       840       850       860       870
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1785379715 1619 KKKLEMDLQDMESQMDSANKGRDEAVKQLKKLQLQFKEVWREVEETRAARDEI--FVQSRDNEKKLKSLEA 1687
Cdd:COG1196    944 ETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLleVIEELDKEKRERFKET 1014
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
1082-1934 2.31e-23

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 108.61  E-value: 2.31e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1082 KQQLARKEEELQAALARVDDEVgqkNNLLKQLRDLQSQ------LAELHEDLESEKAARAKAEKQrrDLGEELEALKTEL 1155
Cdd:TIGR02168  174 RKETERKLERTRENLDRLEDIL---NELERQLKSLERQaekaerYKELKAELRELELALLVLRLE--ELREELEELQEEL 248
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1156 EDTLDSTAAQQELRAKREQEVTDLKKTIEEDvkvrDAQVTEMRQRHNQVVEEISEQLEQARRFKGNLEKVKQTLESENTD 1235
Cdd:TIGR02168  249 KEAEEELEELTAELQELEEKLEELRLEVSEL----EEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQ 324
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1236 LIKEVKNLQAAKQDSEQRRKKLEQ---QVSEFQIRTNESEKVKFELAEKLQKLQAELDGVSGALGSTEGKSIKLTKDLST 1312
Cdd:TIGR02168  325 LEELESKLDELAEELAELEEKLEElkeELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIER 404
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1313 VQSQLQDTQELLQeetrqklNFSSRVRQLEEEKNNLMENLEEEESAkaqlsrqlqalqqqllESKKRMEDQGGMVEAMEE 1392
Cdd:TIGR02168  405 LEARLERLEDRRE-------RLQQEIEELLKKLEEAELKELQAELE----------------ELEEELEELQEELERLEE 461
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1393 AkkksykeLEFLQQRFDEKHQINDKLEKTRNRLQQELDDLmvdldhqRQIVSNLEKKQKKFDQMLAEEKNISARYGEERD 1472
Cdd:TIGR02168  462 A-------LEELREELEEAEQALDAAERELAQLQARLDSL-------ERLQENLEGFSEGVKALLKNQSGLSGILGVLSE 527
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1473 RAEAEAReketkalsLSRALEEAidlkdeldrqnkqLRAEMDDLV-SSKDDVGKNVHELERS---KRALEQQVQEMKTQI 1548
Cdd:TIGR02168  528 LISVDEG--------YEAAIEAA-------------LGGRLQAVVvENLNAAKKAIAFLKQNelgRVTFLPLDSIKGTEI 586
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1549 EELEDELQAIEDGKLRLEVNMQAMKAQFERDLQNR----------DDSNDEKKKLLFKQV---------REMEVELEEER 1609
Cdd:TIGR02168  587 QGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvvddlDNALELAKKLRPGYRivtldgdlvRPGGVITGGSA 666
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1610 KQKSQILAAK---KKLEMDLQDMESQMDSANKGRDEAVKQLKKLQLQFKEVWREVEETRAARDEIFVQSRDNEKKLKSLE 1686
Cdd:TIGR02168  667 KTNSSILERRreiEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE 746
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1687 AELLQLQEDLAAAERAKRQAQQERDDLADELSNGVSGKSALLDEKRALEMRISQLEEELDEEQSNTELINDRYRKLTLQV 1766
Cdd:TIGR02168  747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL 826
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1767 ETITTELSAERsfsQKAENARQQMERQNKELkvklnemdstmrSKYKITIASLEAKISQLEEQMEQESKERIIANKLVRR 1846
Cdd:TIGR02168  827 ESLERRIAATE---RRLEDLEEQIEELSEDI------------ESLAAEIEELEELIEELESELEALLNERASLEEALAL 891
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1847 AEKRLKEVLLQVEEERRNADQFKEQLEKANIRMKQLKRQLEEAEEEASRANSN-RRRLQRELEDVTESAESMNREVTTLR 1925
Cdd:TIGR02168  892 LRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERlSEEYSLTLEEAEALENKIEDDEEEAR 971

                   ....*....
gi 1785379715 1926 SRLSKLERQ 1934
Cdd:TIGR02168  972 RRLKRLENK 980
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
968-1719 4.04e-23

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 107.83  E-value: 4.04e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  968 KLQLEKVTTESRLKKMEEDILLLEDQNAKLAKERKLLDdrigeftstmaEEEEKVKSLNKLRNKYEAV-IADLEDRLKKE 1046
Cdd:TIGR02168  169 KYKERRKETERKLERTRENLDRLEDILNELERQLKSLE-----------RQAEKAERYKELKAELRELeLALLVLRLEEL 237
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1047 EKGRQEMEKMKRKLDGETTDLQDQLLELQQQIEELKQQLARKEEELQAALARVDDEVGQKNNLLKQLRDLQSQLAELHED 1126
Cdd:TIGR02168  238 REELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQ 317
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1127 LESEKAARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRAKREQEVTDLKKTIEEDVKVRDAQVTEMRQRHNQvVE 1206
Cdd:TIGR02168  318 LEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ-IA 396
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1207 EISEQLEQarrfkgnlekvkqtLESENTDLIKEVKNLQAakQDSEQRRKKLEQQVSEFQIRTNESEKVKFELAEKLQKLQ 1286
Cdd:TIGR02168  397 SLNNEIER--------------LEARLERLEDRRERLQQ--EIEELLKKLEEAELKELQAELEELEEELEELQEELERLE 460
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1287 AELDGVSGALGSTEGKSIKLTKDLSTVQSQLQDTQELLQEetrqKLNFSSRVRQLEEEKNNLMENLEEEES--------A 1358
Cdd:TIGR02168  461 EALEELREELEEAEQALDAAERELAQLQARLDSLERLQEN----LEGFSEGVKALLKNQSGLSGILGVLSElisvdegyE 536
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1359 KAQLSRQLQALQQQLLESKkrmEDQGGMVEAMEEAK---------------KKSYKELEFLQQRFDEKHQINDkLEKTRN 1423
Cdd:TIGR02168  537 AAIEAALGGRLQAVVVENL---NAAKKAIAFLKQNElgrvtflpldsikgtEIQGNDREILKNIEGFLGVAKD-LVKFDP 612
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1424 RLQQELDDL-----MVD-----------LDHQRQIVS----------NLEKKQKKFDQMLAEEKNISARYGEERDRAEAE 1477
Cdd:TIGR02168  613 KLRKALSYLlggvlVVDdldnalelakkLRPGYRIVTldgdlvrpggVITGGSAKTNSSILERRREIEELEEKIEELEEK 692
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1478 AREKETKALSLSRALEEAIDLKDELDRQNKQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQVQEMKTQIEELEDELQA 1557
Cdd:TIGR02168  693 IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE 772
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1558 IEDGKLRLEVNMQAMKAQFERDLQN-----------RDDSNDEKKKLLFKQVREMEVELEEERKQKS--QILAAKKKLEM 1624
Cdd:TIGR02168  773 AEEELAEAEAEIEELEAQIEQLKEElkalrealdelRAELTLLNEEAANLRERLESLERRIAATERRleDLEEQIEELSE 852
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1625 DLQDMESQMDSANKGRDEAVKQLKKLQLQFKEVWREVEETRAARDEIFVQSRDNEKKLKSLEAELLQLQEDLAAAERAKR 1704
Cdd:TIGR02168  853 DIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLE 932
                          810
                   ....*....|....*
gi 1785379715 1705 QAQQERDDLADELSN 1719
Cdd:TIGR02168  933 GLEVRIDNLQERLSE 947
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
970-1738 4.52e-23

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 107.85  E-value: 4.52e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  970 QLEKVTTEsRLKKMEEDILLLEDQNAK---LAKERKLLDDRIGEFTSTMAEEEEKVKSLNKLRNKYEAVIADLEDRLkke 1046
Cdd:TIGR02169  199 QLERLRRE-REKAERYQALLKEKREYEgyeLLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLL--- 274
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1047 ekgRQEMEKMKRKLDGETTDLQDQLLELQQQIEELKQQLARKEEELQAALARVddevgqkNNLLKQLRDLQSQLAELHED 1126
Cdd:TIGR02169  275 ---EELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERL-------AKLEAEIDKLLAEIEELERE 344
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1127 LESEKAARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRAKREQEVTDLKKTIEEDVKVRDAQVTEMRQRHNQVvE 1206
Cdd:TIGR02169  345 IEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEEL-A 423
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1207 EISEQLEQARrfkgnlEKVKQtLESENTDLIKEVK----NLQAAKQDSEQRRKKLEQQVSEFQIRTNESEKVKFELAEKL 1282
Cdd:TIGR02169  424 DLNAAIAGIE------AKINE-LEEEKEDKALEIKkqewKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAE 496
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1283 QKLQAELDGVSGALGSTE--GKSIK----LTKDLSTVQSQLQDTQE-----------------------LLQEETRQKLN 1333
Cdd:TIGR02169  497 AQARASEERVRGGRAVEEvlKASIQgvhgTVAQLGSVGERYATAIEvaagnrlnnvvveddavakeaieLLKRRKAGRAT 576
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1334 FS--SRVRQLEEEKNNLMENLEEEES----------AKAQLSRQLQALQQQLLESKKRMEDQGGMVE----------AME 1391
Cdd:TIGR02169  577 FLplNKMRDERRDLSILSEDGVIGFAvdlvefdpkyEPAFKYVFGDTLVVEDIEAARRLMGKYRMVTlegelfeksgAMT 656
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1392 EAKKKSYKELEFLQQRFDEKHQINDKLEKtrnrLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYGEER 1471
Cdd:TIGR02169  657 GGSRAPRGGILFSRSEPAELQRLRERLEG----LKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEE 732
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1472 DRAEAEAREKETKALSLSRALEEAIDLKDELD-------RQNKQLRAEMDDLVSSKDDVGknVHELERSKRALEQQVQEM 1544
Cdd:TIGR02169  733 EKLKERLEELEEDLSSLEQEIENVKSELKELEarieeleEDLHKLEEALNDLEARLSHSR--IPEIQAELSKLEEEVSRI 810
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1545 KTQIEELEDELQAIEDGKLRLEVNMQAMKAQfERDLQNRDDSNDEKKKLLFKQVREMEVELEEERKQKSQILAAKKKLEM 1624
Cdd:TIGR02169  811 EARLREIEQKLNRLTLEKEYLEKEIQELQEQ-RIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKK 889
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1625 DLQDMESQMDSANKGRDEA---VKQLKKLQLQFKEVWREVEETRAARDEIF---VQSRDNEKKLKSLEAELLQLQEDLAA 1698
Cdd:TIGR02169  890 ERDELEAQLRELERKIEELeaqIEKKRKRLSELKAKLEALEEELSEIEDPKgedEEIPEEELSLEDVQAELQRVEEEIRA 969
                          810       820       830       840
                   ....*....|....*....|....*....|....*....|
gi 1785379715 1699 AERAKRQAQQERDDLADELSNGVSGKSALLDEKRALEMRI 1738
Cdd:TIGR02169  970 LEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERI 1009
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
998-1822 7.37e-20

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 97.06  E-value: 7.37e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  998 AKERKLLDDRI---GEFTSTMAEEEEKVKSLNKLRNKYEAVIADLEDRLKKEEKGRQEMEKM------------------ 1056
Cdd:TIGR02169  152 PVERRKIIDEIagvAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYqallkekreyegyellke 231
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1057 KRKLDGETTDLQDQLLELQQQIEELKQQLARKEEELQAALARVDDEV--------GQKNNLLKQLRDLQSQLAELhEDLE 1128
Cdd:TIGR02169  232 KEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNkkikdlgeEEQLRVKEKIGELEAEIASL-ERSI 310
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1129 SEKAARAK-AEKQRRDLGEELEALKTELEDTLDSTAAQQELRAKREQEVTDLKKTIEE---DVKVRDAQVTEMRQRHNQV 1204
Cdd:TIGR02169  311 AEKERELEdAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDlraELEEVDKEFAETRDELKDY 390
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1205 VEEiseqLEQARRFKGNLEKVKQTLESENTDLIKEVKNLQAAKQDSEQRRKKLEQQVSEFQIRTNESEKVKFELAEKLQK 1284
Cdd:TIGR02169  391 REK----LEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSK 466
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1285 LQAELDGVSGALGSTEGKSIKLTKDLSTVQSQLQDTQELLQEETRQKLNFSSR-------VRQLEEEKNNLMENLEEEES 1357
Cdd:TIGR02169  467 YEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASiqgvhgtVAQLGSVGERYATAIEVAAG 546
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1358 AKAQLSRqlqalqqqlleskkrMEDQGGMVEAMEEAKKKSYKELEFLQQRFDEKHQINDKLEKTRNRLQQELDdlMVDLD 1437
Cdd:TIGR02169  547 NRLNNVV---------------VEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVD--LVEFD 609
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1438 HQRQ-----------IVSNLEKKQKKFDQ--MLAEEKNISARYG------EERDRAEAEAREKETKALSLSRALEEAIDL 1498
Cdd:TIGR02169  610 PKYEpafkyvfgdtlVVEDIEAARRLMGKyrMVTLEGELFEKSGamtggsRAPRGGILFSRSEPAELQRLRERLEGLKRE 689
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1499 KDELDRQNKQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQVQEMKTQIEELEDELQAIEDGKLRLEVNMQ---AMKAQ 1575
Cdd:TIGR02169  690 LSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKeleARIEE 769
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1576 FERDLQN-RDDSNDEKKKLLFKQVREMEVELEEERKQKSQILAAKKKLEMDLQDMESQMDSANKGRDEAVKQLKKLQLQF 1654
Cdd:TIGR02169  770 LEEDLHKlEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQI 849
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1655 KEVWREVEETRAARDEIFVQSRDNEKKLKSLEAELLQLQEDLAAAERAKRQAQQERDDLADELSNGVSGKSALLDEKRAL 1734
Cdd:TIGR02169  850 KSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEAL 929
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1735 EMRISQLEEELDEEQSNTELINDrYRKLTLQVETITTELSAERSFSQKAENARQQMERQNKELKVKLNEMdSTMRSKYKI 1814
Cdd:TIGR02169  930 EEELSEIEDPKGEDEEIPEEELS-LEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKL-EEERKAILE 1007

                   ....*...
gi 1785379715 1815 TIASLEAK 1822
Cdd:TIGR02169 1008 RIEEYEKK 1015
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
855-1560 2.85e-19

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 95.12  E-value: 2.85e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  855 QAKVVELQKVKDTQVKTESELKEMANKYQQLFEEKSILAEQLQAETELFAEAEEMRARLASKKQELEEILHDLEARVEEE 934
Cdd:TIGR02168  305 QILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETL 384
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  935 EERTLQLQNEKKKMHQHIQDLEEQLEEEEGARQKLQLEKVTTESRLKKMEedillLEDQNAKLAKERKLLDDRIGEFTST 1014
Cdd:TIGR02168  385 RSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE-----LKELQAELEELEEELEELQEELERL 459
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1015 MAEEEEKVKSLNKLRNKYEAVIADLEdrlkkEEKGRQEM-EKMKRKLDGETTDLQDQLLELQQQIEELKQ--QLARKEEE 1091
Cdd:TIGR02168  460 EEALEELREELEEAEQALDAAERELA-----QLQARLDSlERLQENLEGFSEGVKALLKNQSGLSGILGVlsELISVDEG 534
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1092 LQAALARV------------DDEVGQKNNLLKQLRDLQSQLAEL----HEDLESEKAARAKAEKQRRDLGEELEALKTEL 1155
Cdd:TIGR02168  535 YEAAIEAAlggrlqavvvenLNAAKKAIAFLKQNELGRVTFLPLdsikGTEIQGNDREILKNIEGFLGVAKDLVKFDPKL 614
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1156 E-------------DTLDSTAAQQELRAKREQEVTDLKKTIEED------VKVRDAQVTEMRQRHNQVVEEISEQLEQAR 1216
Cdd:TIGR02168  615 RkalsyllggvlvvDDLDNALELAKKLRPGYRIVTLDGDLVRPGgvitggSAKTNSSILERRREIEELEEKIEELEEKIA 694
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1217 rfkgNLEKVKQTLESENTDLIKEVKNLQAAKQDSEQRRKKLEQQVSEFQIRTNESEKVKFELAEKLQKLQAELDGVSGAL 1296
Cdd:TIGR02168  695 ----ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERL 770
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1297 GSTEGKSIKLTKDLSTVQSQLQDTQELLQEETRQKLNFSSRVRQLEEEKNNLMENLEEEESAKAQLSRQLQALQQQLLES 1376
Cdd:TIGR02168  771 EEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEEL 850
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1377 KKRMEDQGGMVEAMEEAKKKSYKELEFLQQRFDEkhqindkLEKTRNRLQQELDDLMVDLDhqrqivsNLEKKQKKFDQM 1456
Cdd:TIGR02168  851 SEDIESLAAEIEELEELIEELESELEALLNERAS-------LEEALALLRSELEELSEELR-------ELESKRSELRRE 916
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1457 LAEEKNISARYGEERDRAEAEAREKETKALSL-SRALEEAIDLKDELDRQNKQLRAEMDDLVSSKDDVGkNVHEL-ERSK 1534
Cdd:TIGR02168  917 LEELREKLAQLELRLEGLEVRIDNLQERLSEEySLTLEEAEALENKIEDDEEEARRRLKRLENKIKELG-PVNLAaIEEY 995
                          730       740
                   ....*....|....*....|....*.
gi 1785379715 1535 RALEQQVQEMKTQIEELEDELQAIED 1560
Cdd:TIGR02168  996 EELKERYDFLTAQKEDLTEAKETLEE 1021
PTZ00121 PTZ00121
MAEBL; Provisional
867-1719 4.48e-19

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 94.82  E-value: 4.48e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  867 TQVKTESELKEMANKYQQLFEEKSILAEQLQAETELFAEA---EEMRARLASKKQE----LEEILHDLEARVEEEEERTL 939
Cdd:PTZ00121  1064 AHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAkktETGKAEEARKAEEakkkAEDARKAEEARKAEDARKAE 1143
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  940 QLQNEKKKMHQHIQDLEEQLEEEEGARQKLQLEKVTTESRLKKMEEDILLLEDQNAKLAKERKllddrigeftstMAEEE 1019
Cdd:PTZ00121  1144 EARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAAR------------KAEEE 1211
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1020 EKVKSLNKLRN--KYEAVIADLEDRLKKEEKGRQEMEkmkRKLDGETTDLQDQLLELQQQIEELKQQLARKEEELQAALA 1097
Cdd:PTZ00121  1212 RKAEEARKAEDakKAEAVKKAEEAKKDAEEAKKAEEE---RNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEE 1288
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1098 RVDDEVGQKNNLLKQLRDLQSQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRAKREQEVT 1177
Cdd:PTZ00121  1289 KKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEA 1368
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1178 DLKKTIEEDVKVRDA-QVTEMRQRHNQVVEEISEQLEQARRFKGNLEKVKQTLESENTdlIKEVKNLQAAKQDSEQRRKK 1256
Cdd:PTZ00121  1369 AEKKKEEAKKKADAAkKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKK--AEEKKKADEAKKKAEEAKKA 1446
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1257 LEQQVSEFQIRTNESEKVKFELAEKLQKL--QAELDGVSGALGSTEGKSIKLTKDLSTVQSQLQDTQELLQEETRQKlnf 1334
Cdd:PTZ00121  1447 DEAKKKAEEAKKAEEAKKKAEEAKKADEAkkKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKK--- 1523
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1335 SSRVRQLEE----EKNNLMENLEEEESAKAQLSRQLQALQQQLLESKKRMEDQGGMVEAMEEAKKKSYKELEFLQQRFDE 1410
Cdd:PTZ00121  1524 ADEAKKAEEakkaDEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEE 1603
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1411 KHQINDKLEKTRNRLQQELDDLMVDLDHQR---QIVSNLEKKQKKFDQMLAEEKNISARYGEERDRAEAEAREKET--KA 1485
Cdd:PTZ00121  1604 EKKMKAEEAKKAEEAKIKAEELKKAEEEKKkveQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEakKA 1683
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1486 LSLSRALEEAIDLKDELDRQNKQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQVQEMKTQIEEL---EDELQAIEDGK 1562
Cdd:PTZ00121  1684 EEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAkkdEEEKKKIAHLK 1763
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1563 LRLEVNMQAMKAQFERDLQNRDDSNDEKKKLLFKQVREMEVELEEERKQ--KSQILAAKKKLEMDLQDMESQMDSANKGR 1640
Cdd:PTZ00121  1764 KEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEggKEGNLVINDSKEMEDSAIKEVADSKNMQL 1843
                          810       820       830       840       850       860       870
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1785379715 1641 DEAvkqlkklqlqfkevwREVEETRAARDEIFVQSRDNEKKLKSleaELLQLQEDLAAAERAKRQAQQERDDLADELSN 1719
Cdd:PTZ00121  1844 EEA---------------DAFEKHKFNKNNENGEDGNKEADFNK---EKDLKEDDEEEIEEADEIEKIDKDDIEREIPN 1904
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
851-1554 7.77e-19

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 94.01  E-value: 7.77e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  851 DEVMQAKVVELQKVKDTQVKTESELKEMANKYQQLFEEKSILAEQLQAETELFAEAEEMRARLASKKQELEEILHDLEAR 930
Cdd:COG1196    280 REELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEA 359
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  931 VEEEEERTLQLQNEKKKMHQHIQDLEEQLEeeeGARQKLQLEKVTTESRLKKMEEDILLLEDQNAKLAKERKLLDDRIGE 1010
Cdd:COG1196    360 KEELEEKLSALLEELEELFEALREELAELE---AELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEE 436
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1011 FTSTMAEEEEKVKSLNKLRNKYEAVIADLEDRL----KKEEKGRQEMEKMKRKLDGETTDLQDQLLELQQQIEELKQ--- 1083
Cdd:COG1196    437 LQTELEELNEELEELEEQLEELRDRLKELERELaelqEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGlpg 516
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1084 ------QLARKEEELQAALAR----------VDDEVGQKN--NLLKQLR---------DLQSQLAELHEDLESEKAARAk 1136
Cdd:COG1196    517 vygpvaELIKVKEKYETALEAalgnrlqavvVENEEVAKKaiEFLKENKagratflplDRIKPLRSLKSDAAPGFLGLA- 595
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1137 AEKQRRDlGEELEALKTELEDTL---DSTAAQQELRAKR--------EQEVTDLKKTI-------------EEDVKVRDA 1192
Cdd:COG1196    596 SDLIDFD-PKYEPAVRFVLGDTLvvdDLEQARRLARKLRikyrivtlDGDLVEPSGSItggsrnkrsslaqKRELKELEE 674
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1193 QVTEMRQRHNQVVEEISEQLEQARRFKGNLEKVKQTLES---ENTDLIKEVKNLQAAKQDSEQRRKKLEQQVSEFQIRTN 1269
Cdd:COG1196    675 ELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEElerQLEELKRELAALEEELEQLQSRLEELEEELEELEEELE 754
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1270 ESEKVKFELAEKLQKLQAELDGVSGALGSTEGKSIKLTKDLSTVQSQLQDTQELLQEETRQKLNFSSRVRQLEEEKNNLM 1349
Cdd:COG1196    755 ELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELE 834
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1350 ENLEEEESAKAQLSRQLQALQQQLLESKKRMEDQGGMVEAMEEAKKKSYKELEFLQQRFDEKHQINDKLEKTRNRLQQEL 1429
Cdd:COG1196    835 EEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERL 914
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1430 DDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKnisarygEERDRAEAEAREKETKALSLsRALEEAIDLKDELDRQNKQL 1509
Cdd:COG1196    915 EELEAKLERLEVELPELEEELEEEYEDTLETE-------LEREIERLEEEIEALGPVNL-RAIEEYEEVEERYEELKSQR 986
                          730       740       750       760
                   ....*....|....*....|....*....|....*....|....*
gi 1785379715 1510 RaemddlvsskddvgknvhELERSKRALEQQVQEMKTQIEELEDE 1554
Cdd:COG1196    987 E------------------DLEEAKEKLLEVIEELDKEKRERFKE 1013
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
1112-1962 8.40e-19

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 93.63  E-value: 8.40e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1112 QLRDLQSQLAELHEdlesekaaraKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRAKREQEVTDLKKTIEEDVKVRD 1191
Cdd:pfam15921   86 QVKDLQRRLNESNE----------LHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELE 155
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1192 AQvtemRQRHNQVVEEISEQLEQARRFKGNLEKVKQTLESENTDLiKEVKNLQAAKQDS-------------EQRRKKLE 1258
Cdd:pfam15921  156 AA----KCLKEDMLNDSNTQIEQLRKMMLSHEGVLQEIRSILVDF-EEASGKKIYEHDSmstihfrslgsaiSKILRELD 230
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1259 QQVSEFQIRT----NESEKVKFELAEKLQKL-QAELDGVSGALGSTEGKSIKLTKDLSTVQSQ---LQDTQELLQEETRQ 1330
Cdd:pfam15921  231 TEISYLKGRIfpveDQLEALKSESQNKIELLlQQHQDRIEQLISEHEVEITGLTEKASSARSQansIQSQLEIIQEQARN 310
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1331 KlnFSSRVRQLEEeknnlmenleeeesakaqLSRQLQALQQQLLESKKRMEDQggmVEAMEeakkksyKELEFLQQRFDE 1410
Cdd:pfam15921  311 Q--NSMYMRQLSD------------------LESTVSQLRSELREAKRMYEDK---IEELE-------KQLVLANSELTE 360
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1411 KHQINDKLEKTRNRLQQELDDLMVDLdHQRQIVSNLEKKQKK--FDQMLAEEKNIsarygeERDRAEAEAREKETKALsl 1488
Cdd:pfam15921  361 ARTERDQFSQESGNLDDQLQKLLADL-HKREKELSLEKEQNKrlWDRDTGNSITI------DHLRRELDDRNMEVQRL-- 431
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1489 sRALEEAidLKDELDRQNKQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQVQEMKTQIEELEDELQAIEDGKLRLEVN 1568
Cdd:pfam15921  432 -EALLKA--MKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEK 508
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1569 MQAMKAQFER--DLQNRDDSNDEKKKLLFKQVREMEVELEEERKQKSQILAAKKKLEMDLQDMESQMDSANK-GRDEAVK 1645
Cdd:pfam15921  509 ERAIEATNAEitKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQhGRTAGAM 588
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1646 QLKKLQLQfKEV---WREVEETRAARDEIFVQSRDNEKKLKSLEAELLQLQEDLAAAERAKRQAQQERDDLADELSNGVS 1722
Cdd:pfam15921  589 QVEKAQLE-KEIndrRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRN 667
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1723 GKSALLDEKRALEMRISQLeeeldeeqsnTELINDRYRKLTLQVETITTELSAERSFSQKAENArqqmerQNKELKVKLN 1802
Cdd:pfam15921  668 ELNSLSEDYEVLKRNFRNK----------SEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGS------DGHAMKVAMG 731
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1803 eMDSTMRSKyKITIASLEAKISQLEEQMEQESKERII----ANKL--------------------VRRAEKRLKEVLLQV 1858
Cdd:pfam15921  732 -MQKQITAK-RGQIDALQSKIQFLEEAMTNANKEKHFlkeeKNKLsqelstvateknkmagelevLRSQERRLKEKVANM 809
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1859 EEERRNAD-QFKE------QLEKANIRMKqLKRQLEEAEEEASRANSNRRRLQRELEDVTESAESMNreVTTLRSRLSKL 1931
Cdd:pfam15921  810 EVALDKASlQFAEcqdiiqRQEQESVRLK-LQHTLDVKELQGPGYTSNSSVKPRLLQPASFTRPHSN--VPSSQSTASFL 886
                          890       900       910
                   ....*....|....*....|....*....|...
gi 1785379715 1932 ERQQRKRAPI-QFTTRTIRQVYQ-LEAVSDEEP 1962
Cdd:pfam15921  887 SHHSIKCEMLkEDPTRDLKQLLQeLRSVINEEP 919
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
844-1555 2.99e-17

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 88.59  E-value: 2.99e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  844 LLQVTRQDEVMQAKVVElqkvKDTQVKTESELKEMANKYQQLFEEK-----SILAEQLQAeteLFAEAEEMRARLASKKQ 918
Cdd:TIGR02169  179 LEEVEENIERLDLIIDE----KRQQLERLRREREKAERYQALLKEKreyegYELLKEKEA---LERQKEAIERQLASLEE 251
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  919 ELEEI---LHDLEARVEEEEERTLQLQNEKKKMHQHIQdleeqleeeegARQKLQLEKVTTEsrLKKMEEDILLLEDQNA 995
Cdd:TIGR02169  252 ELEKLteeISELEKRLEEIEQLLEELNKKIKDLGEEEQ-----------LRVKEKIGELEAE--IASLERSIAEKERELE 318
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  996 KLAKERKLLDDRIGEFTSTMAEEEEKVKSLNKLRNKYEAVIADLEDRL-----------KKEEKGRQEMEKMKRKLDgET 1064
Cdd:TIGR02169  319 DAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELedlraeleevdKEFAETRDELKDYREKLE-KL 397
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1065 TDLQDQLLELQQQIEELKQQLARKEEELQAALARVDDevgQKNNLLKQLRDLQSQLAELHEDLESEKAARAKAEKQRRDL 1144
Cdd:TIGR02169  398 KREINELKRELDRLQEELQRLSEELADLNAAIAGIEA---KINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDL 474
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1145 GEELEALKTELE------DTLDSTAAQQELRAKREQEVTDLKKTIEEDVKVRDAQVTEMRQRH-------------NQVV 1205
Cdd:TIGR02169  475 KEEYDRVEKELSklqrelAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYataievaagnrlnNVVV 554
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1206 EEIS---EQLEQARRFKGN------LEKVKQtlESENTDLIKE------------------------------VKNLQAA 1246
Cdd:TIGR02169  555 EDDAvakEAIELLKRRKAGratflpLNKMRD--ERRDLSILSEdgvigfavdlvefdpkyepafkyvfgdtlvVEDIEAA 632
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1247 K-QDSEQRRKKLEQQVSEFQ-------IRTNESEKVKFELAEKLQKLQAELDGVSGALGStegksikLTKDLSTVQSQLQ 1318
Cdd:TIGR02169  633 RrLMGKYRMVTLEGELFEKSgamtggsRAPRGGILFSRSEPAELQRLRERLEGLKRELSS-------LQSELRRIENRLD 705
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1319 DTQELLQEETRQKLNFSSRVRQLEEEKNNLMENLEEEESAKAQLSRQLQALQQQLLESKKRMEDQGGMVEAMEEAKKKSY 1398
Cdd:TIGR02169  706 ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLE 785
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1399 KELefLQQRFDEKHQINDKLEKTRNRLQQELDDLMVDLdhqrqivsnlekKQKKFDQMLAEEKnisaRYGEERDRAEAEA 1478
Cdd:TIGR02169  786 ARL--SHSRIPEIQAELSKLEEEVSRIEARLREIEQKL------------NRLTLEKEYLEKE----IQELQEQRIDLKE 847
                          730       740       750       760       770       780       790
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1785379715 1479 REKETKalslsRALEEAIDLKDELDRQNKQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQVQEMKTQIEELEDEL 1555
Cdd:TIGR02169  848 QIKSIE-----KEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRL 919
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
915-1296 1.22e-16

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 86.69  E-value: 1.22e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  915 SKKQELEEILHDLEARVEEEEERTLQLQNEKKKMHQHIQDLEEQLEEEEGARQKLQLEKVTTESRLKKMEEDILLLEDQN 994
Cdd:COG1196    667 RELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEEL 746
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  995 AKLAKERKLLDDRIgeftstmAEEEEKVKSLNKLRNKYEAVIADLEDRLKKEEKGRQEMEKMKRKLDGETTDLQDQLLEL 1074
Cdd:COG1196    747 EELEEELEELQERL-------EELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESL 819
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1075 QQQIEELKQQLARKEEELQAALARVDDEVGQKNNLLKQLRDLQSQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTE 1154
Cdd:COG1196    820 EQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESE 899
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1155 LEDTLDSTAAQQELRAKREQEVTDLKktieedVKVRDAQVTEMRQRHNQVVEEISEQLEQARRFKGNLEKVKQTLESENT 1234
Cdd:COG1196    900 LAELKEEIEKLRERLEELEAKLERLE------VELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYE 973
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1785379715 1235 DLIKEVKNLQAAKQDSEQRRKKLEQQVSEF-QIRTNESEKVKFELAEKLQKLQAEL-DGVSGAL 1296
Cdd:COG1196    974 EVEERYEELKSQREDLEEAKEKLLEVIEELdKEKRERFKETFDKINENFSEIFKELfGGGTAEL 1037
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
1184-1945 1.84e-16

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 85.89  E-value: 1.84e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1184 EEDVKVRDA-----QVTEMRQRHNQVVEEISEQLEQARRFKGNLEKVKQTL----ESENTDLIKEVKNLQAAKQDSEQRR 1254
Cdd:TIGR02169  167 EFDRKKEKAleeleEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLkekrEYEGYELLKEKEALERQKEAIERQL 246
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1255 KKLEQQVSEFQIRTNESEKVKFELAEKLQKLQAELDGVsgalgsTEGKSIKLTKDLSTVQSQLQDTQELLQEETRQKLNF 1334
Cdd:TIGR02169  247 ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDL------GEEEQLRVKEKIGELEAEIASLERSIAEKERELEDA 320
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1335 SSRVRQLEEEKNNLMENLEEEESAKAQLSRQLQALQQQLLESKKRMEDQGGMVEAMEEAKKKSYKELEFLQQRFDE-KHQ 1413
Cdd:TIGR02169  321 EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKlKRE 400
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1414 INDkLEKTRNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDqmlaeeknisarygEERDRAEAEAREKETKalslsraLE 1493
Cdd:TIGR02169  401 INE-LKRELDRLQEELQRLSEELADLNAAIAGIEAKINELE--------------EEKEDKALEIKKQEWK-------LE 458
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1494 EAIDLKDELDRQNKQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQVQEMKTQIEELEDELQAI-----------EDGK 1562
Cdd:TIGR02169  459 QLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVhgtvaqlgsvgERYA 538
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1563 LRLEV--------------------------------------NMQAMKA------------------QFERDLQN---- 1582
Cdd:TIGR02169  539 TAIEVaagnrlnnvvveddavakeaiellkrrkagratflplnKMRDERRdlsilsedgvigfavdlvEFDPKYEPafky 618
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1583 --RD----DSNDEKKKL------------LFKQVREMEVELEEERKQKSQILAAKKKLEM---DLQDMESQMDSANKGRD 1641
Cdd:TIGR02169  619 vfGDtlvvEDIEAARRLmgkyrmvtlegeLFEKSGAMTGGSRAPRGGILFSRSEPAELQRlreRLEGLKRELSSLQSELR 698
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1642 EAVKQLKKLQLQFKEVWREVEETRAARDEIfvqsrdnEKKLKSLEAELLQLQEDLAAAERAKRQAQQERDDLADELSNGV 1721
Cdd:TIGR02169  699 RIENRLDELSQELSDASRKIGEIEKEIEQL-------EQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELE 771
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1722 SGKSALLDEKRALEMRISQLEEELDEEQSNTelINDRYRKLTLQVETITTELSAERSFSQKAENARQQMERQNKELKVKL 1801
Cdd:TIGR02169  772 EDLHKLEEALNDLEARLSHSRIPEIQAELSK--LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQI 849
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1802 N------EMDSTMRSKYKITIASLEAKISQLEEQMEQESKERIIANKLVRRAEKRLKEVLLQVEEERRNADQFKEQLEKA 1875
Cdd:TIGR02169  850 KsiekeiENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEAL 929
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1876 NIRMKQLKRQLEEAEEEASRANS------NRRRLQRE---LEDVTESAESMNREVTTLRSRL-SKLERQQRKRAPIQFTT 1945
Cdd:TIGR02169  930 EEELSEIEDPKGEDEEIPEEELSledvqaELQRVEEEiraLEPVNMLAIQEYEEVLKRLDELkEKRAKLEEERKAILERI 1009
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The ...
999-1871 5.17e-16

RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 84.64  E-value: 5.17e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  999 KERKLLDDRIGEFTSTMAEEE------EKVKSLNKLRNKYEAVIADLEDRLKKEEKGRQEMEKMKRKLDGETTDLQDQLL 1072
Cdd:pfam02463  153 ERRLEIEEEAAGSRLKRKKKEalkkliEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYL 232
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1073 ELQQQIEELKQQLARKEEELQAALARVDDEVGQKNNLLKQLRDLQSQLAELHEDLESEKAARAKAEKQRRDLGEELEALK 1152
Cdd:pfam02463  233 KLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDD 312
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1153 TELEDTLDSTAAQQELRAKREQEVTDLKKTIEEDVKVRdaqvtemRQRHNQVVEEISEQLEQARRFKGNLEKvKQTLESE 1232
Cdd:pfam02463  313 EEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIK-------REAEEEEEEELEKLQEKLEQLEEELLA-KKKLESE 384
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1233 NTDLIKEVKNLQAAKQDSEQRRKKLEQQVSE-----FQIRTNESEKVKFELAEKLQKLQAELDGVSGALGSTEGKSIKLT 1307
Cdd:pfam02463  385 RLSSAAKLKEEELELKSEEEKEAQLLLELARqledlLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDE 464
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1308 KDLSTVQSQLQDTQELLQEETRQKLNFSS---RVRQLEEEKNNLMENLEEEESAKAQLSRQLQALQQQLLESKKRMEDQG 1384
Cdd:pfam02463  465 LELKKSEDLLKETQLVKLQEQLELLLSRQkleERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVA 544
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1385 GMVEAMEEAKKKSyKELEFLQQRFDEKHQINDKLEKTRNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNIS 1464
Cdd:pfam02463  545 ISTAVIVEVSATA-DEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAK 623
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1465 ARYGEERDRAEAEAREKETKALSLSRA---LEEAIDLKDELDRQNKQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQV 1541
Cdd:pfam02463  624 VVEGILKDTELTKLKESAKAKESGLRKgvsLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKK 703
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1542 QEMKTQIEELEDELQAIEDGKLRLEVNMQAMKAQFERDLQNRDDSNDEKKKLLFKQVREMEVELEEERKQKSQIL-AAKK 1620
Cdd:pfam02463  704 KEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEeREKT 783
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1621 KLEMDLQDMESQMDSANKGRDEAVKQLKKLQLQFKEVWREVEETRAARDEIFVQSRDNEKKL----KSLEAELLQLQEDL 1696
Cdd:pfam02463  784 EKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEqkleKLAEEELERLEEEI 863
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1697 AAAERAKRQAQQERDDLADELSNGVSGKSALLDEKRALEMRISQLEEELDEEQSNTELINDRYRKLTLQVETITTELSAE 1776
Cdd:pfam02463  864 TKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLE 943
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1777 RSFSQKAENARQQMERQNKELKVKLNEMDSTMRSKYKITIASLEAKISQLEEQMEQESKERIIANKLVRRAEKRLKEVLL 1856
Cdd:pfam02463  944 EADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEFL 1023
                          890
                   ....*....|....*
gi 1785379715 1857 QVEEERRNADQFKEQ 1871
Cdd:pfam02463 1024 ELFVSINKGWNKVFF 1038
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
907-1560 6.97e-16

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 84.04  E-value: 6.97e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  907 EEMRARLASKKQELEEILHDLearveeeeertlqLQNEKKKMHqhiqdleeqLEEEEGARQKLQLEKVTTESRLKKMEED 986
Cdd:COG0419    143 GEFDAFLKSKPKERKEILDEL-------------FGLEKYEKL---------SELLKEVIKEAKAKIEELEGQLSELLED 200
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  987 IL-LLEDQNAKLAKERKLLDdrigeftstmAEEEEKVKSLNKLRNKYEAVIADLEDRLKKEEKGRQEMEKMKrkldgetT 1065
Cdd:COG0419    201 IEdLLEALEEELKELKKLEE----------IQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIE-------S 263
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1066 DLQDQLLELQQQIEELKQQLARKEEELQaALARVDDEVGQKNNLLKQLRDLQSQLAELHEDLESEKAARAKAEKQRRDLG 1145
Cdd:COG0419    264 LELEALKIREEELRELERLLEELEEKIE-RLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLE 342
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1146 EELEALKTELEDTLDstaAQQELRAKREQEVTDLKKTIEEDVKVRDaQVTEMRQRHNQVVEEISEQLEQARRFKGNLEKV 1225
Cdd:COG0419    343 SELEELAEEKNELAK---LLEERLKELEERLEELEKELEKALERLK-QLEEAIQELKEELAELSAALEEIQEELEELEKE 418
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1226 KQTLESENTDLIKEVKNLQAAKQDSEQRRKKLEQQVSEFQIRTNESEKVKFELAEKLQKLQaeldgvsgalgstEGKSIK 1305
Cdd:COG0419    419 LEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELY-------------ELELEE 485
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1306 LTKDLSTVQSQLQDTQELLQEETRQKLNFSSRVRQLEEEKNNLMENLEEEESAKAQLSRQLQALQQQLLESKKRMEDQGG 1385
Cdd:COG0419    486 LEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLE 565
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1386 MVEAMEEAKKKSYKELEFLQQRFDEKHQINDKLEKTRNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFD-QMLAEEKNIS 1464
Cdd:COG0419    566 DRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEElESELEKLNLQ 645
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1465 ARYGEERDRAEAEAREKETKALSLSRALEEAIDLKDELDRQN---KQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQV 1541
Cdd:COG0419    646 AELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLeelEQLEEELEQLREELEELLKKLGEIEQLIEELESRK 725
                          650
                   ....*....|....*....
gi 1785379715 1542 QEMKTQIEELEDELQAIED 1560
Cdd:COG0419    726 AELEELKKELEKLEKALEL 744
PTZ00121 PTZ00121
MAEBL; Provisional
857-1665 1.20e-15

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 83.65  E-value: 1.20e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  857 KVVELQKVKDTQVKTESELKEMANKYQQLFEEKSILAEQLQAETELFAEAEEMR-----ARLASKKQELEEILHDLEARV 931
Cdd:PTZ00121  1183 KAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKkdaeeAKKAEEERNNEEIRKFEEARM 1262
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  932 EEEEERTLQLQNEKKKMHQHIQDleeqleeeegARQKLQLEKVTTESRLKKMEEdiLLLEDQNAKLAKERKllddrigef 1011
Cdd:PTZ00121  1263 AHFARRQAAIKAEEARKADELKK----------AEEKKKADEAKKAEEKKKADE--AKKKAEEAKKADEAK--------- 1321
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1012 tstmAEEEEKVKSLNKLRNKYEAVIADLEDRLKKEEKGRQEMEKMKRKLDGEttdlqdqllelqqqieELKQQLARKEEE 1091
Cdd:PTZ00121  1322 ----KKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAA----------------EKKKEEAKKKAD 1381
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1092 lqaALARVDDEVGQKNNLLKQLRDLQSQLAELHEDLESEKAA---RAKAEKQRRdlgeeLEALKTELEDTLDSTAAQQEL 1168
Cdd:PTZ00121  1382 ---AAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKAdeaKKKAEEKKK-----ADEAKKKAEEAKKADEAKKKA 1453
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1169 RAKREQEvtDLKKTIEEDVKVRDAQVTEMRQRH----NQVVEEISEQLEQARRFKGNLEKVKQTLESENTDLIKEVKNLQ 1244
Cdd:PTZ00121  1454 EEAKKAE--EAKKKAEEAKKADEAKKKAEEAKKadeaKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE 1531
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1245 AAKQDSEQRR----KKLEQQVSEFQIRTNEsEKVKFELAEKLQKLQAELDGVSGALGSTEGKSIKLTKDLSTVQSQLQDT 1320
Cdd:PTZ00121  1532 EAKKADEAKKaeekKKADELKKAEELKKAE-EKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAE 1610
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1321 QELLQEETRQKlnfSSRVRQLEEEKNNLMENLEEEESAKAQLSRQLQALQQQL---LESKKRMEDQGGMVEAMEEAKKKS 1397
Cdd:PTZ00121  1611 EAKKAEEAKIK---AEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKikaAEEAKKAEEDKKKAEEAKKAEEDE 1687
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1398 YKELEFLQQRFDEKHqindKLEKTRNRLQQELD--DLMVDLDHQRQIVSNLEKKQKKFDQMLAEEknisARYGEERDRAE 1475
Cdd:PTZ00121  1688 KKAAEALKKEAEEAK----KAEELKKKEAEEKKkaEELKKAEEENKIKAEEAKKEAEEDKKKAEE----AKKDEEEKKKI 1759
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1476 AEAREKETKALSLSRALEEAIdLKDELDRQNKQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQVQEMktqieELEDEL 1555
Cdd:PTZ00121  1760 AHLKKEEEKKAEEIRKEKEAV-IEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEM-----EDSAIK 1833
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1556 QAIEDGKLRLEVNMQAMKAQFERDLQNRDDSNDEKKkllfkqvreMEVELEEERKQKSQILAAKKKLEMDLQDMESQMDS 1635
Cdd:PTZ00121  1834 EVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEAD---------FNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPN 1904
                          810       820       830
                   ....*....|....*....|....*....|.
gi 1785379715 1636 AN-KGRDEAVKQLKKLQLQFKEvwREVEETR 1665
Cdd:PTZ00121  1905 NNmAGKNNDIIDDKLDKDEYIK--RDAEETR 1933
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
870-1674 2.64e-15

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 82.42  E-value: 2.64e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  870 KTESELKEMANKYQQLFEEKSILAEQLQAETELFAEAEEMRARLASKKQELEEILHDLEARVEEE-EERTLQLQNEKKKM 948
Cdd:TIGR02169  220 KREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGEL 299
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  949 H--------------QHIQDLEEQleeeegaRQKLQLEKVTTESRLKKMEEDIlllEDQNAKLAKerkllddrigeftsT 1014
Cdd:TIGR02169  300 EaeiaslersiaekeRELEDAEER-------LAKLEAEIDKLLAEIEELEREI---EEERKRRDK--------------L 355
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1015 MAEEEEKVKSLNKLRNKYEAVIADLEDRLKKEEKGRQEMEKMKRKLDgettdlqdQLLELQQQIEELKQQLARKEEELQA 1094
Cdd:TIGR02169  356 TEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN--------ELKRELDRLQEELQRLSEELADLNA 427
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1095 ALARVDDevgQKNNLLKQLRDLQSQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTELEDtldstaAQQELRAKREQ 1174
Cdd:TIGR02169  428 AIAGIEA---KINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSK------LQRELAEAEAQ 498
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1175 evtdlKKTIEEDVKVRDAQVTEMRQRHNQVVEEISEQLEQARRFKGNLEKV-----------KQTLESENTDLIKEVKN- 1242
Cdd:TIGR02169  499 -----ARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAagnrlnnvvveDDAVAKEAIELLKRRKAg 573
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1243 ------LQAAKQDSEQRRKKLEQQVSEFQIRTNESEKvKFELAeklqklqaeldgVSGALGST-------EGKSIKLTKD 1309
Cdd:TIGR02169  574 ratflpLNKMRDERRDLSILSEDGVIGFAVDLVEFDP-KYEPA------------FKYVFGDTlvvedieAARRLMGKYR 640
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1310 LSTVQSQLQDTQELLQEETRQKLNFSSRVRQLEEEKNNLMENLEEEESAKAQLSRQLQALQQQLLESKKRMEDQGGMVEA 1389
Cdd:TIGR02169  641 MVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE 720
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1390 MEEAKKKSYKELEFLQQRFDEKHQINDKLEKTRNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKniSARYGE 1469
Cdd:TIGR02169  721 IEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR--IPEIQA 798
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1470 ERDRAEAEAREKETKALSLSRALEEAIDLKDELDRQNKQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQVQEMKTQIE 1549
Cdd:TIGR02169  799 ELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALR 878
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1550 ELEDELQAIEDGKLRLEVNMQAMKAQFERDLQNRDDSNDEKKKLLFKQVREMEVELEEERKQKS------------QILA 1617
Cdd:TIGR02169  879 DLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEdeeipeeelsleDVQA 958
                          810       820       830       840       850       860
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1785379715 1618 AKKKLEMDLQDMES-------QMDSANKGRDEAVKQLKKLQLQFKEVWREVEETRAARDEIFVQ 1674
Cdd:TIGR02169  959 ELQRVEEEIRALEPvnmlaiqEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFME 1022
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
1391-1937 3.07e-14

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 78.65  E-value: 3.07e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1391 EEAKKKSYKELEFLQQRFDEKHQIND-KLEKTRNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYGE 1469
Cdd:COG0419    195 SELLEDIEDLLEALEEELKELKKLEEiQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREE 274
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1470 ERDRAEAEAREKETKALSLSRALEEAIDLKDELDRQNKQLrAEMDDLVSSKDDVGKNVHELERSKRALEQQVQEMKTQIE 1549
Cdd:COG0419    275 ELRELERLLEELEEKIERLEELEREIEELEEELEGLRALL-EELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKN 353
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1550 ELEDELQAIEDGKLRLEVNMQAMKAQFERDLQNRDDSNDEKKKL---LFKQVREMEVELEEERKQKSQILAAKKKLEMDL 1626
Cdd:COG0419    354 ELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEElaeLSAALEEIQEELEELEKELEELERELEELEEEI 433
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1627 QDMESQMDSANKGRdEAVKQLKKLQLQ--------FKEVWREVEETRAARDEIFVQSRDNEKKLKSLEAELLQLQEDLAA 1698
Cdd:COG0419    434 KKLEEQINQLESKE-LMIAELAGAGEKcpvcgqelPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRE 512
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1699 AERAKRQAQQERDDLADELSngvsgksalLDEKRALEMRISQLEEELDEEQSNTELINDRYRKLTLQVETITTELSAERS 1778
Cdd:COG0419    513 LEEELIELLELEEALKEELE---------EKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRT 583
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1779 FSQKAENARQ---QMERQNKELKVKLNEMDSTMRSKYKITIAS-LEAKISQLEEQMEQeSKERIIANKLVRRAEKRLKEV 1854
Cdd:COG0419    584 RKEELEELRErlkELKKKLKELEERLSQLEELLQSLELSEAENeLEEAEEELESELEK-LNLQAELEELLQAALEELEEK 662
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1855 LLQVEEERRNADQFKEQLEKANIRMKQLKRQLEEaeeeasransnRRRLQRELEDVTESAESMNREVTTLRSRLSKLERQ 1934
Cdd:COG0419    663 VEELEAEIRRELQRIENEEQLEEKLEELEQLEEE-----------LEQLREELEELLKKLGEIEQLIEELESRKAELEEL 731

                   ...
gi 1785379715 1935 QRK 1937
Cdd:COG0419    732 KKE 734
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
860-1345 3.28e-14

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 78.65  E-value: 3.28e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  860 ELQKVKDTQVKTESELKEMANKYQQLFEEKSILAEQLQAETELFAEAEEMRARLASKKQELEEILHDLEARVEEEEERTL 939
Cdd:COG0419    257 RLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEE 336
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  940 QLQNEKKKMHQHIQDLEEQLEEEEGARQKLQLEKVTTESRLKKMEEDILLLEDQNAKLAKERKLLDDRIGEFTSTMAEEE 1019
Cdd:COG0419    337 KLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELE 416
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1020 EKVKSLNKLRNKYEAVIADLEDRLKKEEKGRQEMEKMKRKLDGE-TTDLQDQLLELQQQIEELKQQLARKEEELQAA--L 1096
Cdd:COG0419    417 KELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCpVCGQELPEEHEKELLELYELELEELEEELSREkeE 496
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1097 ARVDDEVGQKNNLLKQLRDLQSQLAELHEDLESEKAARAKAEKQRRdlgEELEALKTELEdtLDSTAAQQELRAKREQEV 1176
Cdd:COG0419    497 AELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLL---EELEELKEKLQ--LQQLKEELRQLEDRLQEL 571
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1177 TDLKKTIEEDVKVRDAQvtemrQRHNQVVEEISEQLEQARRFKGNLEKVKQTLEsentdLIKEVKNLQAAKQDSEQRRKK 1256
Cdd:COG0419    572 KELLEELRLLRTRKEEL-----EELRERLKELKKKLKELEERLSQLEELLQSLE-----LSEAENELEEAEEELESELEK 641
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1257 LEQQVSEFQIRTNESEKVKFELAEKLQKLQAELdgvsgALGSTEGKSIKLTKDLSTVQSQLQDTQELLQEETRQKLNFSS 1336
Cdd:COG0419    642 LNLQAELEELLQAALEELEEKVEELEAEIRREL-----QRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQ 716

                   ....*....
gi 1785379715 1337 RVRQLEEEK 1345
Cdd:COG0419    717 LIEELESRK 725
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
851-1212 6.86e-14

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 77.45  E-value: 6.86e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  851 DEVMQAKVvELQKVKDTQVKTESELKEMANKYQQLFEEKSILAEQLQAETELFAEAEEMRARLASKKQELEEILHDLEAR 930
Cdd:COG1196    688 EELKSLKN-ELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEE 766
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  931 VEEEEERTLQLQNEKKKMHQHIQDLEEQLEEEEGARQKLQLEKVTTESRLKKMEEDILLLEDQNAKLAKERKLLDDRIGE 1010
Cdd:COG1196    767 LESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDE 846
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1011 FTSTMAEEEEKVKSLNKLRNKYEAVIADLEDRLKKEEKGRQEMEKMKRKLDGEttdlqdqllelqqqIEELKQQLARKEE 1090
Cdd:COG1196    847 LEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESE--------------LAELKEEIEKLRE 912
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1091 ELQAALARVDDEVGQKNNLLKQLRDLQSQlaELHEDLESEKaarAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRA 1170
Cdd:COG1196    913 RLEELEAKLERLEVELPELEEELEEEYED--TLETELEREI---ERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQRE 987
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|..
gi 1785379715 1171 KREQEVTDLKKTIEEDVKvrdaqvtEMRQRHNQVVEEISEQL 1212
Cdd:COG1196    988 DLEEAKEKLLEVIEELDK-------EKRERFKETFDKINENF 1022
PTZ00121 PTZ00121
MAEBL; Provisional
1125-1876 1.69e-13

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 76.72  E-value: 1.69e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1125 EDLESEKAARAKAEKQRRdlGEELEALKtELEDTLDSTAAQQELRAKREQEVTDLKKtIEEDVKVRDAQVTEMRQRHNQV 1204
Cdd:PTZ00121  1112 EEARKAEEAKKKAEDARK--AEEARKAE-DARKAEEARKAEDAKRVEIARKAEDARK-AEEARKAEDAKKAEAARKAEEV 1187
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1205 VE-------EISEQLEQARRFKgNLEKVKQTLESENTDLIKEVKNLQAAKQDSEQRRKKLEQQVSEFQIRTNESEKVKFE 1277
Cdd:PTZ00121  1188 RKaeelrkaEDARKAEAARKAE-EERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFA 1266
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1278 LAEKLQKLQA--ELDGVSGALGSTEGKSIKLTKDLSTVQSQLQDTQELLQEETRQKlnfssrvrQLEEEKNNLMENLEEE 1355
Cdd:PTZ00121  1267 RRQAAIKAEEarKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKK--------KAEEAKKKADAAKKKA 1338
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1356 ESAKAQLSRQLQALQQQLLESKKRMEDQGGMVEAMEEAKKKSykelEFLQQRFDEKHQInDKLEKTRNRLQQELDDLMVD 1435
Cdd:PTZ00121  1339 EEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKA----DAAKKKAEEKKKA-DEAKKKAEEDKKKADELKKA 1413
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1436 LDHQRQIVSNLEKKQKKFDQMLAEEKNISARYGEERDRAEAEAR---------EKETKALSLSRALEEAIDlKDELDRQN 1506
Cdd:PTZ00121  1414 AAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKkaeeakkkaEEAKKADEAKKKAEEAKK-ADEAKKKA 1492
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1507 KQLRAEMDDLvSSKDDVGKNVHEL---ERSKRALEQQVQEMKTQIEELE--------DELQAIEDGKLRLEVNMQAMKAQ 1575
Cdd:PTZ00121  1493 EEAKKKADEA-KKAAEAKKKADEAkkaEEAKKADEAKKAEEAKKADEAKkaeekkkaDELKKAEELKKAEEKKKAEEAKK 1571
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1576 FERDLQNRDDSNDEKKKLLFKQVREMEVELEEERKQKSQilAAKKKLEMDLQDMESqmdsanKGRDEAVKQLKKLQLQFK 1655
Cdd:PTZ00121  1572 AEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAE--EAKKAEEAKIKAEEL------KKAEEEKKKVEQLKKKEA 1643
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1656 EVWREVEETRAARDEIFVQSRDNEKKlkslEAELLQLQEDLAAAERAKRQAQQERDDLADELSNGVSGKSALLDEKR-AL 1734
Cdd:PTZ00121  1644 EEKKKAEELKKAEEENKIKAAEEAKK----AEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKkAE 1719
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1735 EMRISQLEEELDEEQSNTELINDRYRKLTLQVEtitTELSAERSFSQKAENARQQMERQNKELKVK--LNEMDSTMRSKY 1812
Cdd:PTZ00121  1720 ELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKD---EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEeeLDEEDEKRRMEV 1796
                          730       740       750       760       770       780
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1785379715 1813 KITIASLEakiSQLEEQMEQESKERIIANKLVRRAEKRLKEVLLQVEEERRNADQFKEQLEKAN 1876
Cdd:PTZ00121  1797 DKKIKDIF---DNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKN 1857
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The ...
847-1716 1.86e-13

RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 76.16  E-value: 1.86e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  847 VTRQDEVMQAKVVELQKVKDTQVKTESELKEMANKYQQLFEEKSILAEQLQAETELFAEAEEMRArlASKKQELEEILHD 926
Cdd:pfam02463  164 GSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLY--LDYLKLNEERIDL 241
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  927 LEARveeeeertLQLQNEKKKMHQHIQDLEEQLEEEEGARQKLQLEKVttesrlKKMEEDILLLEDQNAKLAKERKLLDD 1006
Cdd:pfam02463  242 LQEL--------LRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEK------KLQEEELKLLAKEEEELKSELLKLER 307
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1007 RIGEFTSTMAEEEEKVKSLNKLRNKYEAVIADLEDRLKKEEKGRQEMEKMKrkldgettdlqdqllelqqqieelKQQLA 1086
Cdd:pfam02463  308 RKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEE------------------------EELEK 363
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1087 RKEEELQAALARVDDEVGQKNNLLKQLRDLQSQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQ 1166
Cdd:pfam02463  364 LQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQ 443
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1167 ELRAKREQEVTDLKKTIEEDvKVRDAQVTEMRQRHNQVVEEISEQLEQARRFKGNLEKVKQTLESENTDLIKEVKNLQAA 1246
Cdd:pfam02463  444 GKLTEEKEELEKQELKLLKD-ELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGG 522
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1247 KQDSEQRRKKLEQQVSEFQIRTNESEKVKFELAEKLQKLQAELDGVSGALGSTEGKSIKLTKDLstVQSQLQDTQELLQE 1326
Cdd:pfam02463  523 RIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPK--LKLPLKSIAVLEID 600
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1327 ETRQKLNFSSRVRQLEEEKNNLMENLEEEESAKAQLSRQLQALQQQLLESKKRMEDQGGMVEAMEEAKKKSYKELEFLQQ 1406
Cdd:pfam02463  601 PILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQE 680
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1407 RFDEKHQINDKLEKTRNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYGEERDRAEAEA----REKE 1482
Cdd:pfam02463  681 LQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEeksrLKKE 760
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1483 TKALSLSRALEEAIDLKDELDRQNKQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQVQEMKTQIEELEDELQAIEDGK 1562
Cdd:pfam02463  761 EKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELAL 840
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1563 LRLEVNMQAMKAQFErdlQNRDDSNDEKKKLLFKQVREMEVELEEERKQKSQILAAKKKLEMDLQDMESQMDSANKGRDE 1642
Cdd:pfam02463  841 ELKEEQKLEKLAEEE---LERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKEN 917
                          810       820       830       840       850       860       870
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1785379715 1643 AVKQLKKLQLQFKEVWREVEETRAARDEIFVQSRDNEKKLKSLEAELLQLQEDLAAAERAKRQAQQERDDLADE 1716
Cdd:pfam02463  918 EIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYN 991
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
875-1497 3.08e-13

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 75.18  E-value: 3.08e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  875 LKEMANKYQQLFEEKSILAEQLQAETELFAEAEEMRARLASKKQELEEILHDLEARVEEEEERTLQLQN----EKKKMHQ 950
Cdd:COG0419    149 LKSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKleeiQEEQEEE 228
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  951 HIQDLEEQLEEEEGARQKLQLEKVTTESRLKKMEEDILLLEDQNAKLAKERKLLDDRIGEFTSTMAEEEEKVKSLNKLRN 1030
Cdd:COG0419    229 ELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELE 308
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1031 KYEAVIADLEDRLKKEEKGRQEMEKMKRKLDGETTDLQDQLLELQQQIEELKQQLARKEEELQAALARVDDEVGQKNNLL 1110
Cdd:COG0419    309 GLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLE 388
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1111 KQLRDLQSQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRAKREQEVTDLKKTIEEDVKVR 1190
Cdd:COG0419    389 EAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELP 468
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1191 DAQVTEMRQRHNQVVEEISEQL---EQARRFKGNLEKVKQTLESENTDLIKEVKNLQAAKQDSEQRRKKLEQQVSEFQIR 1267
Cdd:COG0419    469 EEHEKELLELYELELEELEEELsreKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEEL 548
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1268 TNESekvkfelaeKLQKLQAELDGVSgalgstegKSIKLTKDLSTVQSQLQDTQELLQEETRQKLNFSSRVRQLEEEKNN 1347
Cdd:COG0419    549 KEKL---------QLQQLKEELRQLE--------DRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQ 611
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1348 LMENLEEEESAKAqlSRQLQALQQQLLESKKRMEDQggmvEAMEEAKKKSYKELEFLQQRFDEKHQINDKLEKTRNRLQQ 1427
Cdd:COG0419    612 LEELLQSLELSEA--ENELEEAEEELESELEKLNLQ----AELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEE 685
                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1428 ELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYgEERDRAEAEArEKETKALSLSRALEEAID 1497
Cdd:COG0419    686 KLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRK-AELEELKKEL-EKLEKALELLEELREKLG 753
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
968-1568 3.24e-13

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 75.18  E-value: 3.24e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  968 KLQLEKVTTESRLKKMEEDIL-LLEDQNAKLAKERKLLDdrigeftstmAEEEEKVKSLNKLRNKYEAVIADLEDRLKKE 1046
Cdd:COG0419    182 EAKAKIEELEGQLSELLEDIEdLLEALEEELKELKKLEE----------IQEEQEEEELEQEIEALEERLAELEEEKERL 251
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1047 EKGRQEMEKMKRKLDgettdlqDQLLELQQQIEELKQQLARKEEELQAaLARVDDEVGQKNNLLKQLRDLQSQLAELHED 1126
Cdd:COG0419    252 EELKARLLEIESLEL-------EALKIREEELRELERLLEELEEKIER-LEELEREIEELEEELEGLRALLEELEELLEK 323
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1127 LESEKAARAKAEKQRRDLGEELEALKTELEDTLDstaAQQELRAKREQEVTDLKKTIEEDVKVRDaQVTEMRQRHNQVVE 1206
Cdd:COG0419    324 LKSLEERLEKLEEKLEKLESELEELAEEKNELAK---LLEERLKELEERLEELEKELEKALERLK-QLEEAIQELKEELA 399
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1207 EISEQLEQARRFKGNLEKVKQTLESENTDLIKEVKNLQAAKQDSEQRRKKLEQQVSEF--------QIRTNESEKVKFEL 1278
Cdd:COG0419    400 ELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGekcpvcgqELPEEHEKELLELY 479
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1279 AEKLQKLQAELDGVSGA--LGSTEGKSIKLTKDLSTVQSQLQDTQELLQEETRQKLnfSSRVRQLEEEKNNLMENLEEEE 1356
Cdd:COG0419    480 ELELEELEEELSREKEEaeLREEIEELEKELRELEEELIELLELEEALKEELEEKL--EKLENLLEELEELKEKLQLQQL 557
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1357 SAKAQLSRQLQALQQQLLESKKRMEDQGGMVEAMEEAKKKSYKELEFLQQRFDEK---------HQINDKLEKTRNRLQQ 1427
Cdd:COG0419    558 KEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLeellqslelSEAENELEEAEEELES 637
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1428 ELDDLMVDLDHQRQI---VSNLEKKQKKFDQMLAEEKNISAR---YGEERDRAE-------------AEAREKETKALSL 1488
Cdd:COG0419    638 ELEKLNLQAELEELLqaaLEELEEKVEELEAEIRRELQRIENeeqLEEKLEELEqleeeleqlreelEELLKKLGEIEQL 717
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1489 SRALEEAIDLKDELDRQNKQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQVQEMKTQIEELEDELQAIEDGKLRLEVN 1568
Cdd:COG0419    718 IEELESRKAELEELKKELEKLEKALELLEELREKLGKAGLRADILRNLLAQIEAEANEILSKLSLNRYDLRRLTIRKDGN 797
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
905-1550 3.72e-13

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 75.06  E-value: 3.72e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  905 EAEEMRARLASKKQEL---EEILHDLEARVEEEEERTLQLQNEKKKMHQHIQDLEEQLEEEEGARQKLQLEKVTTESRLK 981
Cdd:TIGR04523   34 EEKQLEKKLKTIKNELknkEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIK 113
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  982 KMEEDILLLEDQNAKLAKERKLLDDRIGEFTSTMAEEEEKVKSLNKLRNKYEAVIADLEDRLKKEEKGRQEMEKMKRKLD 1061
Cdd:TIGR04523  114 NDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIK 193
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1062 GETTDLQDQLLELQQQIEELKqQLARKEEELQAALARVDDEVGQKNnllKQLRDLQSQLAELHEDLESEKAARAKAEKQR 1141
Cdd:TIGR04523  194 NKLLKLELLLSNLKKKIQKNK-SLESQISELKKQNNQLKDNIEKKQ---QEINEKTTEISNTQTQLNQLKDEQNKIKKQL 269
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1142 RDLGEELEALKTELEDTLDS-TAAQQELRAKREQEVTDLKKTIEEDVKVRDAQVTEMRQR---HNQVVEEISEQLEQARR 1217
Cdd:TIGR04523  270 SEKQKELEQNNKKIKELEKQlNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQisqNNKIISQLNEQISQLKK 349
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1218 FKGNLEKVKQTLESENTDLIKEVKNLQAAKQDSEQRRKKLEQQVSEFQIRTNESEKVKFELAEKLQKLQAELDGVSgalg 1297
Cdd:TIGR04523  350 ELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLE---- 425
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1298 stegKSIKLTKdlSTVQSQLQDTQELLQEETRQKLNFSSRVRQLEEEKNNLMENLEEEESAKaqlsrqlqalqQQLLESK 1377
Cdd:TIGR04523  426 ----KEIERLK--ETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIK-----------QNLEQKQ 488
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1378 KRMEDQGGMVEAMEEAKKKSYKELEFLQQRFDEKHQINDKLEKTRNRLQQELDDLMVDL--DHQRQIVSNLEKKQKKFDQ 1455
Cdd:TIGR04523  489 KELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELnkDDFELKKENLEKEIDEKNK 568
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1456 MLAEEKNISARYGEERDRAEAEAREKETKALSLSRALEEAIDLKDELDRQNKQLRAEMDDLVSSKDDvgknvheLERSKR 1535
Cdd:TIGR04523  569 EIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKN-------IKSKKN 641
                          650
                   ....*....|....*
gi 1785379715 1536 ALEQQVQEMKTQIEE 1550
Cdd:TIGR04523  642 KLKQEVKQIKETIKE 656
PTZ00121 PTZ00121
MAEBL; Provisional
828-1526 5.68e-13

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 74.79  E-value: 5.68e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  828 KLRHWQWWRLFTKVKPLLQVTRQDEVMQAKVVELQKVKDTQVKTESELKEMANKYQQLFEEKSILAEQLQAEtELFAEAE 907
Cdd:PTZ00121  1247 EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAD-EAKKKAE 1325
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  908 EMRARLASKKQELEEILHDLEARVEEEEERTLQLQNEKKKMHQHIQDLEEQLEEEEGARQKLQlEKVTTESRLKKMEEDI 987
Cdd:PTZ00121  1326 EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE-EKKKADEAKKKAEEDK 1404
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  988 LLLEDQNAKLAKERKllddriGEFTSTMAEEEEKVKSLNKlrnkyEAVIADLEDRLKKEEKGRQEMEKMKRKLDgettdl 1067
Cdd:PTZ00121  1405 KKADELKKAAAAKKK------ADEAKKKAEEKKKADEAKK-----KAEEAKKADEAKKKAEEAKKAEEAKKKAE------ 1467
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1068 qdqlLELQQQIEELKQQLARKEEELQaalaRVDDEVGQKNNLLKQLRDLQSQLAELHEDLESEKAARAKAEKQRRdlgEE 1147
Cdd:PTZ00121  1468 ----EAKKADEAKKKAEEAKKADEAK----KKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAK---KA 1536
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1148 LEALKTELEDTLDSTAAQQELRAKREQEVTDLKKTIEEDVKVRDAQVTEMRQRHNQVVEEI-----------SEQLEQAR 1216
Cdd:PTZ00121  1537 DEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVmklyeeekkmkAEEAKKAE 1616
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1217 RFKGNLEKVKQTLESENTDLIKEVKNLQAAKQDSEQRRKKLEQQVSEFQIRTNESEKVKfeLAEKLQKLQAELDGVSGAL 1296
Cdd:PTZ00121  1617 EAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK--KAEEAKKAEEDEKKAAEAL 1694
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1297 GSTEGKSIKLTKDLSTVQSQLQDTQELLQEETRQKLNFSSRVRQLEEEKNNLMEnleeeesAKAQLSRQLQALQQQLLES 1376
Cdd:PTZ00121  1695 KKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEE-------AKKDEEEKKKIAHLKKEEE 1767
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1377 KKRMEDQGGMVEAMEEAKKKsykelEFLQQRFDEKHQINDKLEKTRNRLQQELDDLMVDLDHQRQIVSNLeKKQKKFDQM 1456
Cdd:PTZ00121  1768 KKAEEIRKEKEAVIEEELDE-----EDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAI-KEVADSKNM 1841
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1457 LAEEKNISARYGEERDRAEAEAREKETKALSLSRALEEAIDLKDELDRQNKQLRAEMDDLVSSKDDVGKN 1526
Cdd:PTZ00121  1842 QLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMAGKN 1911
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
1136-1717 8.01e-13

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 73.94  E-value: 8.01e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1136 KAEKQRRDLGEELEALKTELEDTLDSTAAQQELRAKREQEVTDLKKTIEEDVKVRdaqvtemrqrhnqvvEEISEQLEQA 1215
Cdd:PRK03918   162 NAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSEL---------------PELREELEKL 226
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1216 RRFKGNLEKVKQTLES---ENTDLIKEVKNLQAAKQDSEQRRKKLEQQVSEFQIRTNESEKVKfELAEKLQKLQAELDgv 1292
Cdd:PRK03918   227 EKEVKELEELKEEIEElekELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELK-EKAEEYIKLSEFYE-- 303
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1293 sgalgSTEGKSIKLTKDLSTVQSQLQDTQELLQ--EETRQKLN-FSSRVRQLEEEKNNLMENLEEEESAKAQLSRQLQAL 1369
Cdd:PRK03918   304 -----EYLDELREIEKRLSRLEEEINGIEERIKelEEKEERLEeLKKKLKELEKRLEELEERHELYEEAKAKKEELERLK 378
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1370 QQQLLESKKRMEDqggMVEAMEEAKKKSYKELEFLQQRFDEKHQINDKLEKTRNRLQQ---------------------- 1427
Cdd:PRK03918   379 KRLTGLTPEKLEK---ELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKakgkcpvcgrelteehrkelle 455
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1428 ----ELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYGEERDRAEAEAREKETKALSLSRALEEAIDLKDELD 1503
Cdd:PRK03918   456 eytaELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLI 535
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1504 RQNKQLRAEMDDLvSSKDDVGKNVHELERSKRALEQQVQEMKTQI--------EELEDELQAIE----------DGKLRL 1565
Cdd:PRK03918   536 KLKGEIKSLKKEL-EKLEELKKKLAELEKKLDELEEELAELLKELeelgfesvEELEERLKELEpfyneylelkDAEKEL 614
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1566 EVNMQAMKAQFERDLQNRDDSNDEKKKLLFKQVREMEVELEEERKQKSQILAAKKKLEMDLQDMESQMDSANKGRDEAVK 1645
Cdd:PRK03918   615 EREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKK 694
                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1785379715 1646 QLKKLQlqfkevwREVEETRAARDEIfvqsrdneKKLKSLEAELLQLQEDLAAAE-RAKRQAQQERDDLADEL 1717
Cdd:PRK03918   695 TLEKLK-------EELEEREKAKKEL--------EKLEKALERVEELREKVKKYKaLLKERALSKVGEIASEI 752
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
1267-1872 1.09e-12

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 73.64  E-value: 1.09e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1267 RTNESEKVKFELAEKLQKLQAELDGVSGALgstegkSIKLTKDLSTVQSQLQDTQELLQEETRQKLNFSSRVRQLEEEKN 1346
Cdd:COG0419    165 GLEKYEKLSELLKEVIKEAKAKIEELEGQL------SELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALE 238
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1347 NLMENLEEEESAKAQLSRQLQALQQQLLESKKRMEDQggmveamEEAKKKSYKELEFLQQRFDEKHQINDKLEKTRNRLQ 1426
Cdd:COG0419    239 ERLAELEEEKERLEELKARLLEIESLELEALKIREEE-------LRELERLLEELEEKIERLEELEREIEELEEELEGLR 311
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1427 QELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYGEERDRAEAEAREKETKALSLSRALEEAIDLKDELDRQN 1506
Cdd:COG0419    312 ALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAI 391
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1507 KQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQVQEMKTQIEELEDELQAIEDGKLRLEvnmQAMKAQFERDLQNRDDS 1586
Cdd:COG0419    392 QELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIA---ELAGAGEKCPVCGQELP 468
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1587 NDEKKKLLFKQVREMEVELE--EERKQKSQILAAKKKLEMDLQDMESQMDSANKgrdEAVKQLKKLQLQFKEVWREVEET 1664
Cdd:COG0419    469 EEHEKELLELYELELEELEEelSREKEEAELREEIEELEKELRELEEELIELLE---LEEALKEELEEKLEKLENLLEEL 545
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1665 RAARDEIFVQS--------RDNEKKLKSLEAELLQLQEDLAAAERAKRQAQQERDDLA---------DELSNGVSGKSAL 1727
Cdd:COG0419    546 EELKEKLQLQQlkeelrqlEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKeleerlsqlEELLQSLELSEAE 625
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1728 LDEKRALEmRISQLEEELDEEQSNTELINDRYRKLTLQVETITTELSAERSFSQKAENARQQMERQnKELKVKLNEMDST 1807
Cdd:COG0419    626 NELEEAEE-ELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEEL-EQLEEELEQLREE 703
                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1808 MRSKYKI--TIASLEAKISQLEEQME---QESKERIIANKLVRRAEKRLKEVLLQVEEERRNADQFKEQL 1872
Cdd:COG0419    704 LEELLKKlgEIEQLIEELESRKAELEelkKELEKLEKALELLEELREKLGKAGLRADILRNLLAQIEAEA 773
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
849-1555 1.10e-12

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 73.56  E-value: 1.10e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  849 RQDEVmqAKVVELQKVKDTQVKTESELKEMANKYQQLFEEKSILAEQLQAETELFAEAEEMRARLASKKQELEEILHdle 928
Cdd:PRK03918   133 RQGEI--DAILESDESREKVVRQILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLR--- 207
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  929 aRVEEEEERTLQLQNEKKKMHQHIQDLEEQLEEEEgarqKLQLEKVTTESRLKKMEEDILLLEDQNAKLAKERKLLddri 1008
Cdd:PRK03918   208 -EINEISSELPELREELEKLEKEVKELEELKEEIE----ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEEL---- 278
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1009 geftstmaeeEEKVKSLNKLRNK---YEAVIADLEDRLKKEEKGRQEMEKMKRKLDGettdlQDQLLELQQQIEELKQQL 1085
Cdd:PRK03918   279 ----------EEKVKELKELKEKaeeYIKLSEFYEEYLDELREIEKRLSRLEEEING-----IEERIKELEEKEERLEEL 343
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1086 ARKEEELQAALARVDDEVgqknNLLKQLRDLQSQLAELHEDLESEKAARAKAEKqrrdlgEELEALKTELEDTLDSTAAQ 1165
Cdd:PRK03918   344 KKKLKELEKRLEELEERH----ELYEEAKAKKEELERLKKRLTGLTPEKLEKEL------EELEKAKEEIEEEISKITAR 413
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1166 qelRAKREQEVTDLKKTIEEDVKVRD------AQVTEmrqrhnqvvEEISEQLEQARRFKGNLEKVKQTLESENTDLIKE 1239
Cdd:PRK03918   414 ---IGELKKEIKELKKAIEELKKAKGkcpvcgRELTE---------EHRKELLEEYTAELKRIEKELKEIEEKERKLRKE 481
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1240 VKNLQaaKQDSEQRRKKLEQQVSEfQIRTNESEKVKFELaEKLQKLQAELDGVsgalgstEGKSIKLTKDLSTVQSQLQD 1319
Cdd:PRK03918   482 LRELE--KVLKKESELIKLKELAE-QLKELEEKLKKYNL-EELEKKAEEYEKL-------KEKLIKLKGEIKSLKKELEK 550
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1320 TQELLQEetrqKLNFSSRVRQLEEEKnnlmenleeeesakaqlsrqlqalqqqlLESKKRMEDQGgmVEAMEEAKKKsYK 1399
Cdd:PRK03918   551 LEELKKK----LAELEKKLDELEEEL----------------------------AELLKELEELG--FESVEELEER-LK 595
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1400 ELEFLQQRFDEKHQINDKLEKTRNRLQQELDDLmvdldhqRQIVSNLEKKQKKFDQMLAEEKNISARYGEErdraeaEAR 1479
Cdd:PRK03918   596 ELEPFYNEYLELKDAEKELEREEKELKKLEEEL-------DKAFEELAETEKRLEELRKELEELEKKYSEE------EYE 662
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1785379715 1480 EKETKALSLSRALEEAIDLKDELDRQNKQLRAEMDDLVSSKDDVGKNVHELERSKRALEqQVQEMKTQIEELEDEL 1555
Cdd:PRK03918   663 ELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALE-RVEELREKVKKYKALL 737
PTZ00121 PTZ00121
MAEBL; Provisional
1172-1885 1.74e-12

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 73.25  E-value: 1.74e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1172 REQEVTDLKKTIEEDVKV-RDAQVTEMRQRHNQVVEEISEQLEQARRFKGNLEKVKQTLESENTDL--IKEVKNLQAAKQ 1248
Cdd:PTZ00121  1043 KEKDIIDEDIDGNHEGKAeAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETgkAEEARKAEEAKK 1122
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1249 DSEQRRKKLEQQVSEFQIRTNESEKVKFELAEKLQKLQAELDGVSGALGSTEGKSIKLTKDLSTVQ--SQLQDTQELLQE 1326
Cdd:PTZ00121  1123 KAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRkaEELRKAEDARKA 1202
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1327 ETRQKlnfSSRVRQLEEEKNNlmenleeeesakaqlsrqlqalqqqllESKKRMEDqggmVEAMEEAKKKSYKEleflqq 1406
Cdd:PTZ00121  1203 EAARK---AEEERKAEEARKA---------------------------EDAKKAEA----VKKAEEAKKDAEEA------ 1242
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1407 rfdekhqinDKLEKTRNRLQ-QELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNIS--ARYGEERDRAEAEAR--EK 1481
Cdd:PTZ00121  1243 ---------KKAEEERNNEEiRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAdeAKKAEEKKKADEAKKkaEE 1313
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1482 ETKALSLSRALEEAIDLKDELDRQNKQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQVQEMKTQIEELE---DELQAI 1558
Cdd:PTZ00121  1314 AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKkkaEEKKKA 1393
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1559 EDGKLRLEVNMQamKAQFERDLQNRDDSNDEKKKLLFKQVREMEVELEEERKQKSQilAAKKKLEMDLQDMESQMDSANK 1638
Cdd:PTZ00121  1394 DEAKKKAEEDKK--KADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKAD--EAKKKAEEAKKAEEAKKKAEEA 1469
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1639 GRDEAVKQLKKLQLQFKEVWREVEETRAARDEIFVQSRDNEKKLKSLEAELLQLQEDLAAAERAK-----RQAQQERDdl 1713
Cdd:PTZ00121  1470 KKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKkadeaKKAEEKKK-- 1547
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1714 ADELSNGVSGKSA-----LLDEKRALEMRISQLEEELDEEQSNTELINDRYRKLTLQVETITTELSAERSFSQKAENARQ 1788
Cdd:PTZ00121  1548 ADELKKAEELKKAeekkkAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK 1627
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1789 QMERQNKELKVKLNEMDSTMRSK--------YKITIASLEAKISQ----LEEQMEQESKERIIANKLVRRAE--KRLKEV 1854
Cdd:PTZ00121  1628 AEEEKKKVEQLKKKEAEEKKKAEelkkaeeeNKIKAAEEAKKAEEdkkkAEEAKKAEEDEKKAAEALKKEAEeaKKAEEL 1707
                          730       740       750
                   ....*....|....*....|....*....|.
gi 1785379715 1855 LLQVEEERRNADQFKEQLEKANIRMKQLKRQ 1885
Cdd:PTZ00121  1708 KKKEAEEKKKAEELKKAEEENKIKAEEAKKE 1738
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
1375-1938 3.56e-12

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 71.63  E-value: 3.56e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1375 ESKKRMEDQGGMVEAMEEAKKKSYKELEFLQQRFDEkhqINDKLEKTRNRLQqELDDLMVDLDHQRQIVSNLEKKQKKFD 1454
Cdd:PRK03918   176 RRIERLEKFIKRTENIEELIKEKEKELEEVLREINE---ISSELPELREELE-KLEKEVKELEELKEEIEELEKELESLE 251
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1455 QmlaEEKNISARYGEERDRAEaEAREKETKALSLSRALEEAIDLKDELDRqnkqLRAEMDDLVSSKDDVGKNVHELERSK 1534
Cdd:PRK03918   252 G---SKRKLEEKIRELEERIE-ELKKEIEELEEKVKELKELKEKAEEYIK----LSEFYEEYLDELREIEKRLSRLEEEI 323
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1535 RALEQQVQE---MKTQIEELEDELQAIEDGKLRLEVNMQAmkaqFERDLQNRDDSNDEKKKLLFKQVREMEVELEEERKQ 1611
Cdd:PRK03918   324 NGIEERIKEleeKEERLEELKKKLKELEKRLEELEERHEL----YEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKA 399
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1612 KSQILAAKKKLEmdlqDMESQMDSANKGRDEAVKQLKKLQLQFKEVWREVEEtraardeifvqsRDNEKKLKSLEAELLQ 1691
Cdd:PRK03918   400 KEEIEEEISKIT----ARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTE------------EHRKELLEEYTAELKR 463
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1692 LQEDLAAAERAKRQAQQERDDLADELSNG--VSGKSALLDEKRALEMRISQ-LEEELDEEQSNTELINDRYRKLTLQVET 1768
Cdd:PRK03918   464 IEKELKEIEEKERKLRKELRELEKVLKKEseLIKLKELAEQLKELEEKLKKyNLEELEKKAEEYEKLKEKLIKLKGEIKS 543
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1769 ITTELSAERSFsqkaENARQQMERQNKELKVKLNEMDSTMRSKYKITIASLEAKISQLEEQMEQESKeriianklVRRAE 1848
Cdd:PRK03918   544 LKKELEKLEEL----KKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLE--------LKDAE 611
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1849 KRLKEVLLQVEEERRNADQFKEQLEKANIRMKQLKRQLEEAEEEAS-----RANSNRRRLQRELEDVTESAESMNREVTT 1923
Cdd:PRK03918   612 KELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSeeeyeELREEYLELSRELAGLRAELEELEKRREE 691
                          570
                   ....*....|....*
gi 1785379715 1924 LRSRLSKLERQQRKR 1938
Cdd:PRK03918   692 IKKTLEKLKEELEER 706
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
892-1229 4.65e-12

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 71.63  E-value: 4.65e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  892 LAEQLQAETELFAEAEEMRARLASKKQELEEILHDLEARVEEEEERTLQLQNEKKKMHQHIQDLEEQLEEEEGARQKLQL 971
Cdd:TIGR02168  682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  972 EKVTTESRLKKMEEDILLLEDQNAKLAKERKLLDDRIGEFTSTMAEEEEKVKSLNKLRNKYEAVIADLEDRLKKEEKGRQ 1051
Cdd:TIGR02168  762 EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1052 EMEKMKRK-------LDGETTDLQDQLLELQQQIEELKQQLARKEEELQAALARVDDEVGQKNNLLKQLRDLQSQLAELH 1124
Cdd:TIGR02168  842 DLEEQIEElsediesLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELR 921
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1125 EDLESEKAARAKAEKQRRDLGEEL-EALKTELEDTLDSTAAQQELRAKREQEVTDLKKTIE-------------EDVKVR 1190
Cdd:TIGR02168  922 EKLAQLELRLEGLEVRIDNLQERLsEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKelgpvnlaaieeyEELKER 1001
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*.
gi 1785379715 1191 -------DAQVTEMRQRHNQVVEEISEQLEQarRFKGNLEKVKQTL 1229
Cdd:TIGR02168 1002 ydfltaqKEDLTEAKETLEEAIEEIDREARE--RFKDTFDQVNENF 1045
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
860-1534 5.57e-12

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 71.29  E-value: 5.57e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  860 ELQKVKDTQVKTESELKEMANKYQqlfEEKSILAEQLQAETELFAEAEEMRARLASKKQELEEILHD----------LEA 929
Cdd:pfam05483   86 EAEKIKKWKVSIEAELKQKENKLQ---ENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKEnnatrhlcnlLKE 162
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  930 RVEEEEERTLQLQNEKKKMHQHIQDLEEQLEEEEGARQKLQLEkvTTESRLK---KMEEDILLLEDQNAKLAKERKLLDD 1006
Cdd:pfam05483  163 TCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQ--AENARLEmhfKLKEDHEKIQHLEEEYKKEINDKEK 240
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1007 RIGEFTSTMAEEEEKVKSLNKLRNKYEAVIADLEDRLKKEEKGRQEMEKMKRKLDGETTDLQDQLLELQQQIEELkqqla 1086
Cdd:pfam05483  241 QVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKAL----- 315
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1087 rkEEELQAALARVDDEVGQKNNLLKQLR-----------DLQSQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTEL 1155
Cdd:pfam05483  316 --EEDLQIATKTICQLTEEKEAQMEELNkakaahsfvvtEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSEL 393
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1156 EDtldstaaQQELRAKREQEVTDLKKTIEEDVKVRD--AQVTEMRQRHNQVVEEISEQLEQARRFKGNLEKVKQTLESEN 1233
Cdd:pfam05483  394 EE-------MTKFKNNKEVELEELKKILAEDEKLLDekKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSE 466
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1234 TDLIKEVKNLQAAKQDSEQRRKKLEQQVSEFQIRTNESEKVKFELAEKLQKLQAELDGVSgalgSTEGKSIKLTKDLSTV 1313
Cdd:pfam05483  467 EHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCK----KQEERMLKQIENLEEK 542
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1314 QSQLQDTQELLQEETRQKLN-FSSRVRQLEEEKNNLMENLEEEESAKAQLSRQLQALQQQLLESKKRMEDQGGMVEAMEE 1392
Cdd:pfam05483  543 EMNLRDELESVREEFIQKGDeVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKK 622
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1393 AKKKSYKELEFLQQRFD----EKHQINDKLEKTRNRLQQELDD-------LMVDLDHQRQIVSNLEKKQKKFDQ------ 1455
Cdd:pfam05483  623 KGSAENKQLNAYEIKVNklelELASAKQKFEEIIDNYQKEIEDkkiseekLLEEVEKAKAIADEAVKLQKEIDKrcqhki 702
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1456 -----MLAEEKNISARYGEERDRAEAEAREKETKALSLSRALE-EAIDLKDELDRQNKQLRAEMDDLVSSKDDVGKNVHE 1529
Cdd:pfam05483  703 aemvaLMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEiELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTAI 782

                   ....*
gi 1785379715 1530 LERSK 1534
Cdd:pfam05483  783 LKDKK 787
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
855-1420 6.04e-12

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 70.94  E-value: 6.04e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  855 QAKVVELQKVKDTQVKTESELKEMANKYQQLFEEKSILAEQLQAETELFAEAEEMRARLASKKQELEEILHDLEARVEEE 934
Cdd:COG0419    193 QLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIR 272
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  935 EERTLQLQNEKKKMHQHIQDLEEQLEEEEGARQKLQLEKVTTESR------LKKMEEDILLLEDQNAKLAKERKLLDDRi 1008
Cdd:COG0419    273 EEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELeellekLKSLEERLEKLEEKLEKLESELEELAEE- 351
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1009 geFTSTMAEEEEKVKSLNKLRNKYEAVIADLEDRLKKEEKGRQEMEKMKRKLDGETTDLQDQLLELQQQIEELKQQLARK 1088
Cdd:COG0419    352 --KNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEEL 429
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1089 EEELqaalarvddevgqknNLLKQLRDLQSQLAELHEDLESEKAARAKAEKQRRDLG-EELEALKTELEDTLDSTAAQQE 1167
Cdd:COG0419    430 EEEI---------------KKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHeKELLELYELELEELEEELSREK 494
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1168 LRAKREQEVTDLKKTIEEDVKVRDAQVTEMRQRHNQV---VEEISEQLEQARRFKGNLEkvKQTLESENTDLIKEVKNLQ 1244
Cdd:COG0419    495 EEAELREEIEELEKELRELEEELIELLELEEALKEELeekLEKLENLLEELEELKEKLQ--LQQLKEELRQLEDRLQELK 572
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1245 AAKQDSEQRRKKLEQQvSEFQIRTNESEKVKFELAEKLQKLQAELDGVSgaLGSTEGKSIKLTKDLSTVQSQLQDTQELL 1324
Cdd:COG0419    573 ELLEELRLLRTRKEEL-EELRERLKELKKKLKELEERLSQLEELLQSLE--LSEAENELEEAEEELESELEKLNLQAELE 649
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1325 QEETRQKLNFSSRVRQLEEEKNNLMENLEEEESAKAQLSRQLQALQ---------QQLLESKKRMEDQGGMVEAMEEAKK 1395
Cdd:COG0419    650 ELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEeleqlreelEELLKKLGEIEQLIEELESRKAELE 729
                          570       580
                   ....*....|....*....|....*
gi 1785379715 1396 KSYKELEFLQQRFDEKHQINDKLEK 1420
Cdd:COG0419    730 ELKKELEKLEKALELLEELREKLGK 754
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
998-1532 6.39e-12

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 70.84  E-value: 6.39e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  998 AKERKLLDDRIGEFTSTMAEEEEKVKSLNKLRNKYEAVIADLEDRLKKEEKGRQEMEKMK---RKLDGETTDLQDQLLEL 1074
Cdd:PRK02224   198 EKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEaeiEDLRETIAETEREREEL 277
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1075 QQQIEELKQQLARKEEELQAALARVDDEVGQKNNLLKQLRDLQSQLAELHEDLE----SEKAARAKAEKQRRD------- 1143
Cdd:PRK02224   278 AEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEecrvAAQAHNEEAESLREDaddleer 357
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1144 ---LGEELEALKTELEDTLDSTAAQQELRAKREQEVTDLKKTIE------EDVKVRDAQVTEMRQRHNQVVEEISEQLEQ 1214
Cdd:PRK02224   358 aeeLREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGdapvdlGNAEDFLEELREERDELREREAELEATLRT 437
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1215 ARrfkGNLEKVKQTLES----ENTDLIKEVKNLQAAkQDSEQRRKKLEQQVSEFQIRTNESEKvKFELAEKLQKLQAELD 1290
Cdd:PRK02224   438 AR---ERVEEAEALLEAgkcpECGQPVEGSPHVETI-EEDRERVEELEAELEDLEEEVEEVEE-RLERAEDLVEAEDRIE 512
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1291 gvsgalgstegksiKLTKDLSTVQSQLQDTQELLQEETRQKLNFSSRVRQLEEEKNNLMENLEEEESAKAQLSRQLQALQ 1370
Cdd:PRK02224   513 --------------RLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELN 578
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1371 QQLLESKKRMEDQGGMVEAMEEAKKKSyKELEFLQQRFDEKHQIND----KLEKTRNR---LQQELDDLMVDLDHQR--Q 1441
Cdd:PRK02224   579 SKLAELKERIESLERIRTLLAAIADAE-DEIERLREKREALAELNDerreRLAEKRERkreLEAEFDEARIEEAREDkeR 657
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1442 IVSNLEKKQKKFDQMLAEEKNISARYGE-ERDRAEAEAREKETKALSLSR-ALEEAIDLKDELDRQNKQLRAEMDDlvss 1519
Cdd:PRK02224   658 AEEYLEQVEEKLDELREERDDLQAEIGAvENELEELEELRERREALENRVeALEALYDEAEELESMYGDLRAELRQ---- 733
                          570
                   ....*....|...
gi 1785379715 1520 kddvgKNVHELER 1532
Cdd:PRK02224   734 -----RNVETLER 741
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
850-1151 6.46e-12

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 71.24  E-value: 6.46e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  850 QDEVMQAKVVELQKVKDTQvktESELKEMANKYQQLFEEKSILAEQLQAETELFAEAEEMRARLASKKQELEEILHDLEA 929
Cdd:TIGR02168  706 ELEELEEELEQLRKELEEL---SRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEA 782
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  930 RVEEEEERTLQLQNEKKKMHQHIQDLEEQLEEEEGARQKLQLEKVTTESRLKKMEEDILLLEDQNAKLAKERKLLDDRIG 1009
Cdd:TIGR02168  783 EIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE 862
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1010 EFTSTMAEEEEKVKSLNKLRNKYEAVIADLEDRLKKEEKGRQEMEKMKRKLDGETTDLQDQLLELQQQIEELKQQLARKE 1089
Cdd:TIGR02168  863 ELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQ 942
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1785379715 1090 E--------ELQAALARVDDEVGQKNNLLKQLRDLQSQLAELH-------EDLESEKAARAKAEKQRRDLGEELEAL 1151
Cdd:TIGR02168  943 ErlseeyslTLEEAEALENKIEDDEEEARRRLKRLENKIKELGpvnlaaiEEYEELKERYDFLTAQKEDLTEAKETL 1019
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
1416-1932 6.67e-12

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 70.82  E-value: 6.67e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1416 DKLEKTRNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYGEERDRAEAEAREKETKALSLSRALEEA 1495
Cdd:TIGR04523  176 NLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQL 255
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1496 IDLKDELDRQNKQLRAEMDDLVSSK---DDVGKNVHELERSKRALEQQVQ-----EMKTQIEELEDELQAIEDGKLRLEV 1567
Cdd:TIGR04523  256 NQLKDEQNKIKKQLSEKQKELEQNNkkiKELEKQLNQLKSEISDLNNQKEqdwnkELKSELKNQEKKLEEIQNQISQNNK 335
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1568 NMQAMK---AQFERDLQNRDDSNDEKKKllfkQVREMEVELEEERKQKSQILAAKKKLEMDLQDMESQMDSANKGRDEAV 1644
Cdd:TIGR04523  336 IISQLNeqiSQLKKELTNSESENSEKQR----ELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKD 411
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1645 KQLKKLQLQFKEVWREVEETRAAR-------DEIFVQSRDNEKKLKSLEAELLQLQEDLAAAERAKRQAQQERDDLADEL 1717
Cdd:TIGR04523  412 EQIKKLQQEKELLEKEIERLKETIiknnseiKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKEL 491
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1718 SNGVSGKSALLDEKRALEMrisqleeeldeeqsntelindryrkltlQVETITTELSAERSFSQKAENARQQMERQNKEL 1797
Cdd:TIGR04523  492 KSKEKELKKLNEEKKELEE----------------------------KVKDLTKKISSLKEKIEKLESEKKEKESKISDL 543
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1798 KVKLNEMDSTM-RSKYKITIASLEAKISQLEEqmeqeskeriiANKLVRRAEKRLKEVLLQVEEERRNadqFKEQLEKAN 1876
Cdd:TIGR04523  544 EDELNKDDFELkKENLEKEIDEKNKEIEELKQ-----------TQKSLKKKQEEKQELIDQKEKEKKD---LIKEIEEKE 609
                          490       500       510       520       530
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1785379715 1877 IRMKQLKRQLEEAEEEASRANSNRRRLQRELEDVTESAESMNREVTTLRSRLSKLE 1932
Cdd:TIGR04523  610 KKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEII 665
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
1279-1937 7.02e-12

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 426331 [Multi-domain]  Cd Length: 1081  Bit Score: 70.96  E-value: 7.02e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1279 AEKLQKLQAELDGVSGALGSTEGKSIKLTKDLSTVQSQLQDTQELLQEETRQKLNFSSRVRQLEEeknnlmenleeeesa 1358
Cdd:pfam01576   11 EEELQKVKEKQQKAESELKELEKKHQQLCEEKNILAEQLQAETELFAEAEEMRARLAARKQELEE--------------- 75
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1359 kaqlsrqlqalqqQLLESKKRMEDQGGMVEAMEEAKKKSYKELEFLQQRFDEKHQINDKLE----KTRNRLQQELDDLMV 1434
Cdd:pfam01576   76 -------------ILHELEARLEEEEERSQQLQNEKKKMQQHIQDLEEQLEEEEAARQKLQlekvTTEAKIKKMEEDILL 142
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1435 DLDHQrqivSNLEKKQKKFDQMLAEeknISARYGEErdraeaearEKETKALSLSRALEEAI--DLKDELDRQNKQlRAE 1512
Cdd:pfam01576  143 LEDQN----NKLQKERKLLEERISE---FTSNLAEE---------EEKSKSLNKLKNKHEAMisDLEDRLKKEEKG-RQE 205
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1513 MDDLvssKDDVGKNVHELERSKRALEQQVQEMKTQIEELEDELQAIEDgklRLEvNMQAMKAQFERDLQNRDDSNDEKKK 1592
Cdd:pfam01576  206 LEKA---KRKLEGESSDLQEQIAELQAQIAELRAQLAKKEEELQAALA---RLE-EETAQKNAALKKLRELEAQLSELQE 278
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1593 LLFKQVREMEVELEEERKQKSQILAAKKKLEMDLQDMESQMDSANKgRDEAVKQLKKLQlqfkevwreVEETRAARDEIF 1672
Cdd:pfam01576  279 DLESERAARAKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSK-REQEVTELKKAL---------EEETRSHEAQLQ 348
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1673 VQSRDNEKKLKSLEAELLQLQEDLAAAERAKRQAQQERDDLADELSNGVSGKSALLDEKRALEMRISQLEEELDEEQSNT 1752
Cdd:pfam01576  349 EMRQKHTQALEELTEQLEQAKRNKASLEKAKQALESENAELQAELRSLQQAKQDSEHKRKKLEGQLQELQSRLSESERQR 428
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1753 ELINDRYRKLTLQVETITTELSAERSFSQKAENARQQMERQNKELKVKLNEmDSTMRSKYKITIASLEAKISQLEEQMEQ 1832
Cdd:pfam01576  429 AELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQE-ETRQKLNLSSRLRQLEDEKNSLQEQLEE 507
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1833 ESKERIIANKLVRRAEKRLKEVLLQVEEERRNADQFKEQLEKANIRMKQLKRQLEEAEEEASRANSNRRRLQRELEDVTe 1912
Cdd:pfam01576  508 EEEAKRNVERQLQTLQAQLSDLKKKLEEDAGAVEALEEGRKRLQRELEALTQRLEEKAAAYDKLEKTKNRLQQELDDLL- 586
                          650       660
                   ....*....|....*....|....*
gi 1785379715 1913 saesmnREVTTLRSRLSKLERQQRK 1937
Cdd:pfam01576  587 ------VDLDHQRQLVSNLEKKQKK 605
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
1246-1953 8.83e-12

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 70.51  E-value: 8.83e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1246 AKQDSEQRRKKLEQQ--VSEFQIRTNESEKVKFELAEKLQKLQAELDGVSGALgstegksikltKDLSTVQSQLQDTQEL 1323
Cdd:COG1196    150 INAKPEERRKLIEEAagVSKYKERKEEAERKLERTEENLERLEDLLEELEKQL-----------EKLERQAEKAERYQEL 218
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1324 LQEetRQKLNFSSRVRQLEEEKNNLMENLEEEESAKAQLSrqlqalqqqllESKKRMEDQGGMVEAMEEAKKKSYKELEF 1403
Cdd:COG1196    219 KAE--LRELELALLLAKLKELRKELEELEEELSRLEEELE-----------ELQEELEEAEKEIEELKSELEELREELEE 285
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1404 LQQRFDEKHQINDKLEKTRNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYGEERDRAEAEAREKEt 1483
Cdd:COG1196    286 LQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELE- 364
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1484 kalslsralEEAIDLKDELDRQNKQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQVQEMKTQIEELEDELQAIEDGKL 1563
Cdd:COG1196    365 ---------EKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELE 435
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1564 RLEVNMQAMKAQFERDLQNRDDSNDEKKKLlfkqvremeveleeeRKQKSQILAAKKKLEMDLQDMESQMDSankgrdea 1643
Cdd:COG1196    436 ELQTELEELNEELEELEEQLEELRDRLKEL---------------ERELAELQEELQRLEKELSSLEARLDR-------- 492
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1644 vkqLKKLQLQFKEVWREVEETRAARDEIFVQSRD----NEKKLKSLEAEL---LQ--LQEDLAAAERAKRQAQQERDDLA 1714
Cdd:COG1196    493 ---LEAEQRASQGVRAVLEALESGLPGVYGPVAElikvKEKYETALEAALgnrLQavVVENEEVAKKAIEFLKENKAGRA 569
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1715 DELsngvsgksaLLDEKRALEMRISQLEEELDEEQSNTELINDRYRKL-------TLQVETITTELSAERSFSQKAENAR 1787
Cdd:COG1196    570 TFL---------PLDRIKPLRSLKSDAAPGFLGLASDLIDFDPKYEPAvrfvlgdTLVVDDLEQARRLARKLRIKYRIVT 640
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1788 QQMERQNKELKVKLNEMDSTMRSKYKITIASLEAKISQLEEQMEQESKERIIANKLVRRAEKRLKEVLLQVEEERRNADQ 1867
Cdd:COG1196    641 LDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEE 720
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1868 FKEQLEKANIRMKQLKRQLEEAEEEASRANSNRRRLQRELedvtESAESMNREVTTLRSRL-SKLERQQRKRAPIQFTTR 1946
Cdd:COG1196    721 LKRELAALEEELEQLQSRLEELEEELEELEEELEELQERL----EELEEELESLEEALAKLkEEIEELEEKRQALQEELE 796

                   ....*..
gi 1785379715 1947 TIRQVYQ 1953
Cdd:COG1196    797 ELEEELE 803
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
1036-1594 1.41e-11

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 69.87  E-value: 1.41e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1036 IADLEDRLKKEEKGRQEMEKMKR-KLDGETTDLQDQLLELQQQIEELKQQLARKEEELQAALARV----DDEVGQKNNLL 1110
Cdd:pfam12128  267 YKSDETLIASRQEERQETSAELNqLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHgaflDADIETAAADQ 346
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1111 KQLRDLQSQLAELHEDLE--SEKAARAKAEKQRRDLGEELEaLKTELEDTLDSTAAQQELRakreqevtDLKKTIEEDVk 1188
Cdd:pfam12128  347 EQLPSWQSELENLEERLKalTGKHQDVTAKYNRRRSKIKEQ-NNRDIAGIKDKLAKIREAR--------DRQLAVAEDD- 416
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1189 vRDAQVTEMRQRHNQVVEEISEQleqARRFKGNLEKVK------QTLESENTDLIKEVKNLQAAKQDSEQRRKKLEQQVS 1262
Cdd:pfam12128  417 -LQALESELREQLEAGKLEFNEE---EYRLKSRLGELKlrlnqaTATPELLLQLENFDERIERAREEQEAANAEVERLQS 492
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1263 EFQI----RTNESEKVKF------ELAEKLQKLQAELDGVSGAL-----GSTEGKSIKLTKDLSTVQSQLQDTQ-ELLQE 1326
Cdd:pfam12128  493 ELRQarkrRDQASEALRQasrrleERQSALDELELQLFPQAGTLlhflrKEAPDWEQSIGKVISPELLHRTDLDpEVWDG 572
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1327 ETRQKLNFSS---RVRQLEEEKNNLMENLEEEESAKAQLSRQLQALQQQLLESK-KRMEDQGGMVEAMEEAKKKSYKELE 1402
Cdd:pfam12128  573 SVGGELNLYGvklDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQlVQANGELEKASREETFARTALKNAR 652
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1403 FLQQR-FDEKHQINDKLEKTRNRLQQELDDLMVDLDHQRQIvsnLEKKQKKFDQMLAEEKNISARYGEERDRAEAEAREK 1481
Cdd:pfam12128  653 LDLRRlFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQ---LDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDA 729
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1482 ETKALSLSRALEEAidlkdELDRQNKQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQV-------------------- 1541
Cdd:pfam12128  730 QLALLKAAIAARRS-----GAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIeriavrrqevlryfdwyqet 804
                          570       580       590       600       610
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1785379715 1542 -----QEMKTQIEELEDELQAIEDGKLRLEVNMQAMKAQFERDLQNRDDSNDEKKKLL 1594
Cdd:pfam12128  805 wlqrrPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENL 862
Myosin_N pfam02736
Myosin N-terminal SH3-like domain; This domain has an SH3-like fold. It is found at the ...
31-76 1.45e-11

Myosin N-terminal SH3-like domain; This domain has an SH3-like fold. It is found at the N-terminus of many but not all myosins. The function of this domain is unknown.


Pssm-ID: 426949  Cd Length: 45  Bit Score: 60.91  E-value: 1.45e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 1785379715   31 TAKRQVWVPSEKHGFEAASIKEERGEEVIVELaENGKRVPVAKDDI 76
Cdd:pfam02736    1 DAKKLVWVPDPKEGFVKGEIKEEEGDKVTVET-EDGKTVTVKKDDV 45
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
1622-1936 2.67e-11

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 69.32  E-value: 2.67e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1622 LEMDLQDMESQMDSANKGRdEAVKQLKKLQLqfkEVW-REVEETRAARDEIFVQSRDNEKKLKSLEAELLQLQEDLAAAE 1700
Cdd:TIGR02168  198 LERQLKSLERQAEKAERYK-ELKAELRELEL---ALLvLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELR 273
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1701 RAKRQAQQERDDLADELSNgvsgksaLLDEKRALEMRISQLEEELDEEQSNTELINDRYRKLTLQVETITTELSAERSFS 1780
Cdd:TIGR02168  274 LEVSELEEEIEELQKELYA-------LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKL 346
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1781 QKAENARQQMERQNKELKVKLNEMDSTMRSKYKiTIASLEAKISQLEEQMEQESKERIIANKLVRRAEKRLKEVLLQVEE 1860
Cdd:TIGR02168  347 EELKEELESLEAELEELEAELEELESRLEELEE-QLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE 425
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1785379715 1861 ERRNADqfKEQLEKANIRMKQLKRQLEEAEEEASRANSNRRRLQRELEDVTESAESMNREVTTLRSRLSKLERQQR 1936
Cdd:TIGR02168  426 LLKKLE--EAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE 499
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
938-1883 2.96e-11

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 68.92  E-value: 2.96e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  938 TLQLQNEKKKMHQHIQDLEEQLEEEEGARQKLQLEKvttESRLKKMEEDILLLEDQNAKLAKerklLDDRIGEFTSTMAE 1017
Cdd:TIGR00606  208 ELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSY---ENELDPLKNRLKEIEHNLSKIMK----LDNEIKALKSRKKQ 280
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1018 EEEKVKSLNKLRnkyEAVIADLEDRLKKEEKGRQEMEKMKRKLDGETTDLQDQLLELQQQIEELKQQLARKEEELQAALA 1097
Cdd:TIGR00606  281 MEKDNSELELKM---EKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQAD 357
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1098 RVDDEVgQKNNLLKQLRDLQSQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRAKREQEVT 1177
Cdd:TIGR00606  358 RHQEHI-RARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKK 436
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1178 DLKKTIEEDVKVRDAQVTEMRQRHNQV------VEEISEQLEQARRFKGNLEKVKQTLESENtdLIKEVKNLQAAKQDSE 1251
Cdd:TIGR00606  437 GLGRTIELKKEILEKKQEELKFVIKELqqlegsSDRILELDQELRKAERELSKAEKNSLTET--LKKEVKSLQNEKADLD 514
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1252 QRRKKLEQQVSEFQIRTNESEKVKFELAEKLQKLQA-------ELDGVSGALGSTEGKSI------KLTKDLSTVQSQLQ 1318
Cdd:TIGR00606  515 RKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQirkiksrHSDELTSLLGYFPNKKQledwlhSKSKEINQTRDRLA 594
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1319 DTQELLQEETRQKLNFSSRVRQLEEEKNNLMENLEEEESAKAQLSRQLQALQQQLLESKKRmedqggmveAMEEAKKKSY 1398
Cdd:TIGR00606  595 KLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQR---------AMLAGATAVY 665
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1399 KelEFLQQRFDEKHQ---INDKLEKTRNRLQQELDDLMVDL----DHQRQIVSNLEKKQKKFDQMLAeeknISARYGEER 1471
Cdd:TIGR00606  666 S--QFITQLTDENQSccpVCQRVFQTEAELQEFISDLQSKLrlapDKLKSTESELKKKEKRRDEMLG----LAPGRQSII 739
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1472 DRAEAEAREKETKALSLSRALEEaidLKDELDRQNKQLRAEMDDLVSSKdDVGKNVHELERskraLEQQVQEMKTQIEEL 1551
Cdd:TIGR00606  740 DLKEKEIPELRNKLQKVNRDIQR---LKNDIEEQETLLGTIMPEEESAK-VCLTDVTIMER----FQMELKDVERKIAQQ 811
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1552 EDELQAIEDGKLRLEVNmqamkaQFERDLQNRDDSNDEKKKLLFKqvremeveleEERKQKSQILAAKKKLEmDLQDMES 1631
Cdd:TIGR00606  812 AAKLQGSDLDRTVQQVN------QEKQEKQHELDTVVSKIELNRK----------LIQDQQEQIQHLKSKTN-ELKSEKL 874
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1632 QMDSANKGRDEAVKQLKKLQLQFKEVWREVEEtraARDEIFVQSrdnekklKSLEAELLQLQEDLAAAERAKRQAQQERD 1711
Cdd:TIGR00606  875 QIGTNLQRRQQFEEQLVELSTEVQSLIREIKD---AKEQDSPLE-------TFLEKDQQEKEELISSKETSNKKAQDKVN 944
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1712 DLADELSNGVSGKSALL--------DEKRALEMRISQLEEELDEEQSNTELINDRYRKLTLQVET--ITTELSAERSFSQ 1781
Cdd:TIGR00606  945 DIKEKVKNIHGYMKDIEnkiqdgkdDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTqkIQERWLQDNLTLR 1024
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1782 KAENARQQMERQNKELKVKLNEMDST-MRSKYKI------TIASLEAKISQLEEQMEQESK--ERIIANKLVRRAEKRLK 1852
Cdd:TIGR00606 1025 KRENELKEVEEELKQHLKEMGQMQVLqMKQEHQKleenidLIKRNHVLALGRQKGYEKEIKhfKKELREPQFRDAEEKYR 1104
                          970       980       990
                   ....*....|....*....|....*....|....
gi 1785379715 1853 EVLLQV---EEERRNADQFKEQLEKANIRMKQLK 1883
Cdd:TIGR00606 1105 EMMIVMrttELVNKDLDIYYKTLDQAIMKFHSMK 1138
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The ...
1199-1938 8.27e-11

RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 67.69  E-value: 8.27e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1199 QRHNQVVEEISEQLEQARRFKgNLEKVKQTLESENTDLIKEVKNLQAAKQDSEQRRKKLEqqvsEFQIRTNESEKVKFEL 1278
Cdd:pfam02463  153 ERRLEIEEEAAGSRLKRKKKE-ALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALE----YYQLKEKLELEEEYLL 227
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1279 AEKLQKLQAELDGVSGALGSTEGKSIKLTKDLSTVQSQLQDTQELLQEETRQKLNFssrvrqLEEEKNNLMENLEEEESA 1358
Cdd:pfam02463  228 YLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKL------QEEELKLLAKEEEELKSE 301
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1359 KAQLSRQLQALQQQLLESKKRMEDQGGMVEAMEEAKKKSYKELEFLQQRFDEKHQINDKLEKTRNRLQQELDDLMVDLDH 1438
Cdd:pfam02463  302 LLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKL 381
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1439 QRQIVSNLEKKQKKFDQMLAEEKNISARYGEERDRAEAEAREKETKALSLSRALEEAIDLKDEldrqNKQLRAEMDDLVS 1518
Cdd:pfam02463  382 ESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQG----KLTEEKEELEKQE 457
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1519 SKDDVGKNVHELERSKRALEQQVQEMKTQIEELEDELQAIEDGKLRLEVNMQAMK-AQFERDLQNRDDSNDEKKKLLFKQ 1597
Cdd:pfam02463  458 LKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLlALIKDGVGGRIISAHGRLGDLGVA 537
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1598 VREMEVELEEERKQKSQILAAKKKLEMDLQDMESQMDSaNKGRDEAVKQLKKLQLQFKEVWREVEETRAARDEIFVQSRD 1677
Cdd:pfam02463  538 VENYKVAISTAVIVEVSATADEVEERQKLVRALTELPL-GARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEAD 616
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1678 NEKKLKSLEAELLQLQEDLAAAERAKRQAQQERDD--LADELSNGVSGKSALLDEKRALEMRISQLEEELDEEQSNTELI 1755
Cdd:pfam02463  617 EDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGvsLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILR 696
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1756 NDRYRKLTLQVETITTELSAERSFSQKAENARQQMERQNKELKVKLNEMDSTMRSKYKITIASLEAKISQLE-EQMEQES 1834
Cdd:pfam02463  697 RQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSElSLKEKEL 776
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1835 KERIIANKLVRRAEKRLKEVLLQVEEERRNADQFKEQLEKANIRMkqlKRQLEEAEEEASRANSNRRRLQRELEDVTESA 1914
Cdd:pfam02463  777 AEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQ---LLIEQEEKIKEEELEELALELKEEQKLEKLAE 853
                          730       740
                   ....*....|....*....|....
gi 1785379715 1915 ESMNREVTTLRSRLSKLERQQRKR 1938
Cdd:pfam02463  854 EELERLEEEITKEELLQELLLKEE 877
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
1438-1942 9.25e-11

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 67.09  E-value: 9.25e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1438 HQRQIVSNLEKKQKKFDQMLAEEKNIsarygEERDRAEAEAREKETKALSLSRALEEAIDLKDELDRQNKQLRAEMDDLV 1517
Cdd:COG0419    141 PQGEFDAFLKSKPKERKEILDELFGL-----EKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKEL 215
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1518 SSKDDVgknvhELERSKRALEQQVQEMKTQIEELEDELQAIEDGKLRLEvNMQAMKAQFERDLQNRDDSNDEKKKLLFKQ 1597
Cdd:COG0419    216 KKLEEI-----QEEQEEEELEQEIEALEERLAELEEEKERLEELKARLL-EIESLELEALKIREEELRELERLLEELEEK 289
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1598 VREMEVELEEERKQKSQILAAKKKLEmDLQDMESQMDSANKGRDEAVKQLKKLQLQFKEVWREVEETRAARDEIFvqsRD 1677
Cdd:COG0419    290 IERLEELEREIEELEEELEGLRALLE-ELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERL---KE 365
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1678 NEKKLKSLEAELLQLQEDLAAAERAKRQAQQERDDLADELSNGVSGKSALLDEKRALEmrisQLEEELDEEQSNTELIND 1757
Cdd:COG0419    366 LEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELE----RELEELEEEIKKLEEQIN 441
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1758 RYRKLTLQVETITTELSAERSFSQKAENARQQ--MERQNKELKVKLNEMDSTMRskykitIASLEAKISQLEEQMEQESK 1835
Cdd:COG0419    442 QLESKELMIAELAGAGEKCPVCGQELPEEHEKelLELYELELEELEEELSREKE------EAELREEIEELEKELRELEE 515
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1836 ERIIANKLVRRAEKRLKEVLLQVEEERRNADQFKEQLEKANIR--MKQLKRQLEEAEEEASRANSNRRRLQrELEDVTES 1913
Cdd:COG0419    516 ELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKeeLRQLEDRLQELKELLEELRLLRTRKE-ELEELRER 594
                          490       500
                   ....*....|....*....|....*....
gi 1785379715 1914 AESMNREVTTLRSRLSKLERQQRKRAPIQ 1942
Cdd:COG0419    595 LKELKKKLKELEERLSQLEELLQSLELSE 623
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
838-1719 1.05e-10

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 67.38  E-value: 1.05e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  838 FTKVKPLLQVTRQD--EVMQAKVVELQKVKDTQVKTESELKEMANKYQQLFEEKSIlAEQLQAETELFAEAEEMRARLAS 915
Cdd:TIGR00606  184 YIKALETLRQVRQTqgQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREI-VKSYENELDPLKNRLKEIEHNLS 262
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  916 KKQELEEILHDLEArveeeeeRTLQLQNEKKKMHQhiqdleEQLEEEEGARQKLQLEKVTTESRLKKMEEDILLLEDQNA 995
Cdd:TIGR00606  263 KIMKLDNEIKALKS-------RKKQMEKDNSELEL------KMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELE 329
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  996 KLAKERKLLDDRIGEFTSTMAEEEEKVKSLNKLRNKYEAVIADLEDRLK------------------KEEKGRQEME-KM 1056
Cdd:TIGR00606  330 KLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLEldgfergpfserqiknfhTLVIERQEDEaKT 409
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1057 KRKLDGETTDLQDQLLELQQQIEELKQQLARKEEELQAALARVDDEVGQKNNLLKQLRDLQSQLAELHEDLESEKAARAK 1136
Cdd:TIGR00606  410 AAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSK 489
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1137 AEKQR--RDLGEELEALKTELEDTLDSTAAQQELRAKREQEVTDLKKT--IEEDVKVRDAQVTEMRQRHNQVVEEISEQL 1212
Cdd:TIGR00606  490 AEKNSltETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMemLTKDKMDKDEQIRKIKSRHSDELTSLLGYF 569
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1213 EQARRFKGNLEKVKQTLESENTDLIKEVKNLQAAKQDSEQRR---KKLEQQVSEFQIRTNESEKVKfELAEKLQKLQAEL 1289
Cdd:TIGR00606  570 PNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINnelESKEEQLSSYEDKLFDVCGSQ-DEESDLERLKEEI 648
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1290 DGVSGALGSTEGKSIKLTKDLSTVQSQLQDTQELLQEETRQKLNFSSRVRQLEEEKNNLMENLEEEESakaqlsrqlqal 1369
Cdd:TIGR00606  649 EKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTES------------ 716
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1370 qqQLLESKKRMEDQGGMVEAMEEAKKKSYKELEFLQQRF--------DEKHQI--NDKLEKTRNRLQQELDDLMVDLDHQ 1439
Cdd:TIGR00606  717 --ELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLqkvnrdiqRLKNDIeeQETLLGTIMPEEESAKVCLTDVTIM 794
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1440 RQIVSNLEKKQKKFDQMLAEEKNISARYGEERDRAEAEarEKETKALSLSRALEEAIDLKDELDRQNKQLRAEMDDLVSS 1519
Cdd:TIGR00606  795 ERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQ--EKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSE 872
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1520 KDDVGKNVHElersKRALEQQVQEMKTQIEELedeLQAIEDGKLRLEVNMQAMKAQFERDLQNRDDSNDEKKKLLFKQVR 1599
Cdd:TIGR00606  873 KLQIGTNLQR----RQQFEEQLVELSTEVQSL---IREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVND 945
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1600 EMEVELEEERKQKSQILAAKKKLEMDLQDMESQMDSANKGRDEAVKQLKKLQLQFKEVWREVE----ETRAARDEIFVQS 1675
Cdd:TIGR00606  946 IKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDtqkiQERWLQDNLTLRK 1025
                          890       900       910       920
                   ....*....|....*....|....*....|....*....|....
gi 1785379715 1676 RDNEkkLKSLEAELLQLQEDLaaAERAKRQAQQERDDLADELSN 1719
Cdd:TIGR00606 1026 RENE--LKEVEEELKQHLKEM--GQMQVLQMKQEHQKLEENIDL 1065
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
854-1567 2.23e-10

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 65.89  E-value: 2.23e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  854 MQAKVVELQKVKDTQV---KTESELKE-----MANKYQQLFEEKSILAEQLQAETELFAEAEEMRARLASKKQELEEILH 925
Cdd:pfam15921  115 LQTKLQEMQMERDAMAdirRRESQSQEdlrnqLQNTVHELEAAKCLKEDMLNDSNTQIEQLRKMMLSHEGVLQEIRSILV 194
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  926 DLEarveeeeertlqlQNEKKKMHQHIQDLEEQLEEEEGARQKLQLEKVTTESRLKKMeedILLLEDQNAKLAKERK--- 1002
Cdd:pfam15921  195 DFE-------------EASGKKIYEHDSMSTIHFRSLGSAISKILRELDTEISYLKGR---IFPVEDQLEALKSESQnki 258
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1003 --LLDDRIGEFTSTMAEEEEKVKSLNKLRNKYEAVIADLEDRLK--KEEKGRQEMEKMKRKLDGETTDLQDQLLELQQQI 1078
Cdd:pfam15921  259 elLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEiiQEQARNQNSMYMRQLSDLESTVSQLRSELREAKR 338
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1079 ------EELKQQLARKEEELQAALARVDDEVGQKNNLLKQLRDLQSQLAELHEDLESEKAARAKAekQRRDLGEE--LEA 1150
Cdd:pfam15921  339 myedkiEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRL--WDRDTGNSitIDH 416
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1151 LKTELED------TLDS--TAAQQELRAKREQEVTDLKKTIE--EDVKVRDAQVTEMRQRHNQVVEEISEQleqarrfKG 1220
Cdd:pfam15921  417 LRRELDDrnmevqRLEAllKAMKSECQGQMERQMAAIQGKNEslEKVSSLTAQLESTKEMLRKVVEELTAK-------KM 489
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1221 NLEKVKQTLESENTDLIKEVKNLQAAKQDSEQRRKKLEQQVSEFQIRTNES----------EKVKFELAEK---LQKLQA 1287
Cdd:pfam15921  490 TLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGdhlrnvqtecEALKLQMAEKdkvIEILRQ 569
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1288 ELDGVSGALGSTEGKSIKLTKDLSTVQSQLQDTQELLQEETRQKLNFSSRVRQLEEEKNNLMENLEEEESAKAQLSRQLQ 1367
Cdd:pfam15921  570 QIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVK 649
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1368 ALQQQLLESKKRMEDQGGMVEAMEEakkksykELEFLQQRFDEKhqiNDKLEKTRNRLQQELDDLMVDLDHQRQIVSNLE 1447
Cdd:pfam15921  650 DIKQERDQLLNEVKTSRNELNSLSE-------DYEVLKRNFRNK---SEEMETTTNKLKMQLKSAQSELEQTRNTLKSME 719
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1448 KKQ-KKFDQMLAEEKNISARYGeerdraeaEAREKETKALSLSRALEEAIDLKDELDRQNKQLRAEMDDLVSSKDDVGKN 1526
Cdd:pfam15921  720 GSDgHAMKVAMGMQKQITAKRG--------QIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGE 791
                          730       740       750       760
                   ....*....|....*....|....*....|....*....|....*...
gi 1785379715 1527 VHELERSKRALEQQVQEMKT-------QIEELEDELQAIEDGKLRLEV 1567
Cdd:pfam15921  792 LEVLRSQERRLKEKVANMEValdkaslQFAECQDIIQRQEQESVRLKL 839
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
872-1339 4.43e-10

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 65.06  E-value: 4.43e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  872 ESELKEMANKYQQLFEEKSILAEQLQAETELFAEAEEMRARLASKKQELEEILHDLEA----------RVEEEEERTLQL 941
Cdd:PRK02224   212 ESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAEterereelaeEVRDLRERLEEL 291
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  942 QNEKKKMHQHIQDLEEQLEEEEGARQKLQLEKVTTESRL--------------KKMEEDILLLEDQNAKLAKERKLLDDR 1007
Cdd:PRK02224   292 EEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLeecrvaaqahneeaESLREDADDLEERAEELREEAAELESE 371
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1008 IGEFTSTMAEEEEKVKSLNKLRNKYEAVIADLEDRLKKEEKGRQEMEKMKRKLDGETTDLQDQLLELQQQIeelkqqlaR 1087
Cdd:PRK02224   372 LEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERV--------E 443
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1088 KEEELQAA---------------LARVDDEVGQKNNLLKQLRDLQSQLAELHEDLESEKAArAKAEKQRRDLGEELEALK 1152
Cdd:PRK02224   444 EAEALLEAgkcpecgqpvegsphVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDL-VEAEDRIERLEERREDLE 522
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1153 TELEDTLDSTAAQQELRAKREQEVTDLkktieedvkvrDAQVTEMRQRHNQVVEEISEQLEQARRFKGNLEKVKQTLESE 1232
Cdd:PRK02224   523 ELIAERRETIEEKRERAEELRERAAEL-----------EAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESL 591
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1233 NT---------DLIKEVKNLQAAKQD----SEQRRKKL---------------EQQVSEFQIRTNESEKVKFELAEKLQK 1284
Cdd:PRK02224   592 ERirtllaaiaDAEDEIERLREKREAlaelNDERRERLaekrerkreleaefdEARIEEAREDKERAEEYLEQVEEKLDE 671
                          490       500       510       520       530
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1785379715 1285 LQAELDGVSGALGSTEGkSIKLTKDLSTVQSQLQDTQELLQ---EETRQKLNFSSRVR 1339
Cdd:PRK02224   672 LREERDDLQAEIGAVEN-ELEELEELRERREALENRVEALEalyDEAEELESMYGDLR 728
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
1402-1938 9.34e-10

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 63.91  E-value: 9.34e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1402 EFLQQRFDEKHQINDKLEKTRnrlqQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYGEERDRAEAEArek 1481
Cdd:PRK02224   230 EQARETRDEADEVLEEHEERR----EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEA--- 302
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1482 etkalSLSRALEEAI-DLKDELDRQNKQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQVQEMKTQIEELEDELQ---- 1556
Cdd:PRK02224   303 -----GLDDADAEAVeARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEeare 377
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1557 AIEDGKLRLEvnmqamkaqferDLQNRDDSNDEkkkllfkqvremeveleeerkqksqilaAKKKLEMDLQDMESQMDSA 1636
Cdd:PRK02224   378 AVEDRREEIE------------ELEEEIEELRE----------------------------RFGDAPVDLGNAEDFLEEL 417
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1637 NKGRDEAVKQLKKLQLQFKEVWREVEETRAARDE--------------IFVQSRDNEKKLKSLEAELLQLQEDLAAAEra 1702
Cdd:PRK02224   418 REERDELREREAELEATLRTARERVEEAEALLEAgkcpecgqpvegspHVETIEEDRERVEELEAELEDLEEEVEEVE-- 495
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1703 krqaqqERDDLADELSNGVSGKSALLDEKRALEMRISQLEEELDEEQSNTELINDRyrkltlqVETITTELSAERSFSQK 1782
Cdd:PRK02224   496 ------ERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRER-------AAELEAEAEEKREAAAE 562
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1783 AENARQQMERQNKELKVKLNEMDSTMRSKYKI-----TIASLEAKISQLEEQ------MEQESKERiIANKLVRRAEKRL 1851
Cdd:PRK02224   563 AEEEAEEAREEVAELNSKLAELKERIESLERIrtllaAIADAEDEIERLREKrealaeLNDERRER-LAEKRERKRELEA 641
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1852 KEVLLQVEEERRNADQFKEQLEKANIRMKQLKRQLEEAEEEASRANSNRRRLQR------ELEDVTESAESMNREVTTLR 1925
Cdd:PRK02224   642 EFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEElrerreALENRVEALEALYDEAEELE 721
                          570
                   ....*....|...
gi 1785379715 1926 SRLSKLERQQRKR 1938
Cdd:PRK02224   722 SMYGDLRAELRQR 734
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
852-1432 1.26e-09

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 63.55  E-value: 1.26e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  852 EVMQAKVVELQKV-------KDTQVKTESELKEMANKYQQLFEEKSILAEQLQAETELFAEAEEMRARLASKKQELEEIL 924
Cdd:TIGR02169  364 EELEDLRAELEEVdkefaetRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEK 443
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  925 HDLEARVEEEEERTLQLQNEKKKMHQHIQDLEEQLEEEEGARQKLQLEKVTTESRLKKMEEDILLLEDQnaklakeRKLL 1004
Cdd:TIGR02169  444 EDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAV-------EEVL 516
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1005 DDRIGEFTSTMAE----EEEKVKSL-----NKLRN---KYEAVIADLEDRLKKEEKGR---------------------- 1050
Cdd:TIGR02169  517 KASIQGVHGTVAQlgsvGERYATAIevaagNRLNNvvvEDDAVAKEAIELLKRRKAGRatflplnkmrderrdlsilsed 596
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1051 ------------------------------QEMEKMKR--------KLDGETTDLQDQLLELQQQIEELKQQLARKEEEL 1092
Cdd:TIGR02169  597 gvigfavdlvefdpkyepafkyvfgdtlvvEDIEAARRlmgkyrmvTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAEL 676
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1093 QAALARVDDEVGQKNNLLKQLRDLQSQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRAKR 1172
Cdd:TIGR02169  677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENV 756
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1173 EQEVTDLKKTI---EEDVKVRDAQVTEMRQRHN-QVVEEISEQLEQARRFKGNLEKVKQTLESENTDLIKEVKNLQAAKQ 1248
Cdd:TIGR02169  757 KSELKELEARIeelEEDLHKLEEALNDLEARLShSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ 836
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1249 DSEQRRKKLEQQVSEFQIRTNESEKVKFELAEKLQKLQAELDGVSGALGSTEGKSIKLTKDLSTVQSQLQDtqellQEET 1328
Cdd:TIGR02169  837 ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEE-----LEAQ 911
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1329 RQKLNfsSRVRQLEEEKNNLMENLEEEESAKAQLSRQLQALQQQLLESKKRMEDQGGMvEAMEEAKKKSYKELEFLQQRF 1408
Cdd:TIGR02169  912 IEKKR--KRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEI-RALEPVNMLAIQEYEEVLKRL 988
                          650       660
                   ....*....|....*....|....
gi 1785379715 1409 DEKHQINDKLEKTRNRLQQELDDL 1432
Cdd:TIGR02169  989 DELKEKRAKLEEERKAILERIEEY 1012
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
1119-1735 1.54e-09

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 63.14  E-value: 1.54e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1119 QLAELHEDLESEKAARAKAEKQRRDLGEELEALKTELEDtldstaaqqelraKREQEVTDLKKTIEEDVKVRDAQvtemr 1198
Cdd:PRK02224   160 QLGKLEEYRERASDARLGVERVLSDQRGSLDQLKAQIEE-------------KEEKDLHERLNGLESELAELDEE----- 221
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1199 qrhnqvVEEISEQLEQARRFKGNLEKV----KQTLEsENTDLIKEVKNLQAAKQDSEQRRKKLEQQVSEFQIRTNesekv 1274
Cdd:PRK02224   222 ------IERYEEQREQARETRDEADEVleehEERRE-ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLE----- 289
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1275 kfELAEKLQKLQAELDGVSGALGSTEGKSIKLTKDLSTVQSQLQDTQELLQEETRQKLNFSSRVRQLEEEKNNLMENLEE 1354
Cdd:PRK02224   290 --ELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAE 367
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1355 EESAkaqlsrqlqalqqqLLESKKRMEDQGGMVEAMEEAKKKSYKELEFLQQRFDEKHQINDKLEKTRNRLQQELDDLMV 1434
Cdd:PRK02224   368 LESE--------------LEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEA 433
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1435 DLdhqrqivSNLEKKQKKFDQMLAEEK-----------NISARYGEERDRAEAEAREKETKALSLSrALEEAIDLKDELd 1503
Cdd:PRK02224   434 TL-------RTARERVEEAEALLEAGKcpecgqpvegsPHVETIEEDRERVEELEAELEDLEEEVE-EVEERLERAEDL- 504
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1504 rqnKQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQVQEMKTQIEELEDELQAIEDGKLRLEVNMQAMK---AQFERDL 1580
Cdd:PRK02224   505 ---VEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAReevAELNSKL 581
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1581 QNRDDSNDEKKKLlfkqvremeveleeerkqkSQILAAKKKLEMDLQDMESQMDSANKGRDEAVKQLKKLQLQFKEVWRE 1660
Cdd:PRK02224   582 AELKERIESLERI-------------------RTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAE 642
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1661 VEETRA----ARDEIFVQSRDN-EKKLKSLEAELLQLQEDLAAAERAKRQAQQERDDLaDELSNGVSGKSALLDEKRALE 1735
Cdd:PRK02224   643 FDEARIeearEDKERAEEYLEQvEEKLDELREERDDLQAEIGAVENELEELEELRERR-EALENRVEALEALYDEAEELE 721
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
1082-1874 2.55e-09

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 62.35  E-value: 2.55e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1082 KQQLARKEEELQAALARVDDEVGQKNNLLKQLRDLQSQLAELHEDLESEKaarakaeKQRRDLGEELEALKTELEDtlds 1161
Cdd:TIGR04523   46 KNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNK-------DKINKLNSDLSKINSEIKN---- 114
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1162 taaQQELRAKREQEVTDLKKTIEEDVKVRDAQVTEMRQRHNQVvEEISEQLEQARRFKGNLEKVKQTLESENTDLIKEVK 1241
Cdd:TIGR04523  115 ---DKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKEL-EKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNID 190
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1242 NLQAAKQDSE----------QRRKKLEQQVSEFQIRTNESEKVKFELAEKLQKLQAELDGVSGALGSTEGKSIKLTKDLS 1311
Cdd:TIGR04523  191 KIKNKLLKLElllsnlkkkiQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLS 270
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1312 TVQSQLQDTQELLQEETRQKLNFSSRVRQLEEEKnnlmenleeeesakaqlsrqlqalqqqlleskkrmeDQGGMVEAME 1391
Cdd:TIGR04523  271 EKQKELEQNNKKIKELEKQLNQLKSEISDLNNQK------------------------------------EQDWNKELKS 314
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1392 EAKKKSyKELEFLQQRFDEKHQINDKLEKTRNRLQQELddlmvdldhqrqivSNLEKKQKKFDQMLAEEKNisarygeer 1471
Cdd:TIGR04523  315 ELKNQE-KKLEEIQNQISQNNKIISQLNEQISQLKKEL--------------TNSESENSEKQRELEEKQN--------- 370
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1472 dRAEAEAREKETKALSLSRALEEAIDLKDELDRQnKQLRAEMDdlvsskddvgKNVHELERSKRALEQQVQEMKTQIEEL 1551
Cdd:TIGR04523  371 -EIEKLKKENQSYKQEIKNLESQINDLESKIQNQ-EKLNQQKD----------EQIKKLQQEKELLEKEIERLKETIIKN 438
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1552 EDELQAIEDGKLRLEVNMQAMKAQFERDLQNRDDSNDEKKKLLFKQVREMEVELEEErKQKSQILAAKKKLEMDLQDMES 1631
Cdd:TIGR04523  439 NSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKE-KELKKLNEEKKELEEKVKDLTK 517
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1632 QMDSANKGRDEAVKQLKKLQLQFKEVWREVEEtraarDEIFVQSRDNEKKLKSLEAELLQLQEDLAAAERAKRQAQQERD 1711
Cdd:TIGR04523  518 KISSLKEKIEKLESEKKEKESKISDLEDELNK-----DDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELID 592
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1712 DLADElsngvsgKSALLDEKRALEMRISQleeeldeEQSNTELINDRYRKLTLQVETIttelsaeRSFSQKAENARQQME 1791
Cdd:TIGR04523  593 QKEKE-------KKDLIKEIEEKEKKISS-------LEKELEKAKKENEKLSSIIKNI-------KSKKNKLKQEVKQIK 651
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1792 RQNKELKVKLNEMDSTMR-SKYKITiasleaKISQLEEQMEQESKERI---IANKLVRRAEKRLKEVLLQVEEERRNADQ 1867
Cdd:TIGR04523  652 ETIKEIRNKWPEIIKKIKeSKTKID------DIIELMKDWLKELSLHYkkyITRMIRIKDLPKLEEKYKEIEKELKKLDE 725

                   ....*..
gi 1785379715 1868 FKEQLEK 1874
Cdd:TIGR04523  726 FSKELEN 732
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
874-1313 2.95e-09

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 62.47  E-value: 2.95e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  874 ELKEMANKYQQLFEEKSILAEQLQAETELFAEAEEMRARLASKKQELEEILHD----LEARVEEEEERTLQLQNEKKKMH 949
Cdd:COG0419    302 ELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNElaklLEERLKELEERLEELEKELEKAL 381
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  950 QHIQDLEEQLEEEEGARQKLQLEKVTTESRLKKMEEDILLLEDQNAKLAKERKLLDDRIG--EFTSTMAEEEEKVKSL-- 1025
Cdd:COG0419    382 ERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINqlESKELMIAELAGAGEKcp 461
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1026 -----------NKLRNKYEAVIADLEDRLKKEEKGRQEMEKMKrKLDGETTDLQDQLLELQQQIEELKQQLARKEEELQA 1094
Cdd:COG0419    462 vcgqelpeeheKELLELYELELEELEEELSREKEEAELREEIE-ELEKELRELEEELIELLELEEALKEELEEKLEKLEN 540
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1095 ALA--RVDDEVGQKNNLLKQLRDLQSQLAELHEDLESEKAARA---------KAEKQRRDLGEELEALKTELEDTLDSTA 1163
Cdd:COG0419    541 LLEelEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTrkeeleelrERLKELKKKLKELEERLSQLEELLQSLE 620
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1164 AQQELRA--KREQEVTDLKKTIEEDVKVRDAQVTEMRQRHNQvVEEISEQLEQARRFKGNLEKVKQTLESENtDLIKEVK 1241
Cdd:COG0419    621 LSEAENEleEAEEELESELEKLNLQAELEELLQAALEELEEK-VEELEAEIRRELQRIENEEQLEEKLEELE-QLEEELE 698
                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1785379715 1242 NLQAAKQDSEQRRKKLEQQVSEFQIRTNESEKVKFELaEKLQKLQAELDGVSGALGSTEGKSIKLTKDLSTV 1313
Cdd:COG0419    699 QLREELEELLKKLGEIEQLIEELESRKAELEELKKEL-EKLEKALELLEELREKLGKAGLRADILRNLLAQI 769
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
1405-1938 3.11e-09

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 62.09  E-value: 3.11e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1405 QQRFDEKHQINDKLEKTRNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQmlaEEKNISARYGEERDRAEAEAREKETK 1484
Cdd:COG0419    174 ELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEE---QEEEELEQEIEALEERLAELEEEKER 250
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1485 ALSLSRALEEAIDLKDELDRQNKQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQVQEMKTQIEELEDELQAIEdgklr 1564
Cdd:COG0419    251 LEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLK----- 325
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1565 levNMQAMKAQFERDLQNRDDSNDEKKKLLFKQVREMEVELEEERKQKSQILAAKKKLEMDLQDMESQMDSANKGRDEAV 1644
Cdd:COG0419    326 ---SLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELS 402
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1645 KQLKKLQLQFKEVWREVEETRAARDEIFVQSRDNEKKLKSLEAELLQLQEDLAAAERAKRQAQQERDDLADELSNGVSGK 1724
Cdd:COG0419    403 AALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELE 482
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1725 SALLDEKRALEMRISQLEEELDeeqsntELINDRYRKLTLQVETITTELSAERSFSQKAENARQQMER-QNKELKVKLNE 1803
Cdd:COG0419    483 LEELEEELSREKEEAELREEIE------ELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEElEELKEKLQLQQ 556
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1804 MDStMRSKYKITIASLEAKISQLEEQMEQESKERII--ANKLVRRAEKRLKEVLLQVEE--ERRNADQFKEQLEKANIRM 1879
Cdd:COG0419    557 LKE-ELRQLEDRLQELKELLEELRLLRTRKEELEELreRLKELKKKLKELEERLSQLEEllQSLELSEAENELEEAEEEL 635
                          490       500       510       520       530
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1785379715 1880 KQLKRQLEEaeeeasrANSNRRRLQRELEDVTESAESMNREVTTLRSRLSKLERQQRKR 1938
Cdd:COG0419    636 ESELEKLNL-------QAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKL 687
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
861-1325 3.20e-09

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 61.96  E-value: 3.20e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  861 LQKVKDTQVKTESELKEMANKYQQLFEEKSILAEQLQAETELFAEAEEMRARLASKKQELEEILHDLEARVEEEEERTLQ 940
Cdd:TIGR04523  206 LKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKE 285
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  941 LQNEKKKMHQHIQDLEEQLEEEEGARQKLQLE-----KVTTESRLKKMEEDILLLEDQNAKLAKERKLLDDRIGEFTSTM 1015
Cdd:TIGR04523  286 LEKQLNQLKSEISDLNNQKEQDWNKELKSELKnqekkLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQREL 365
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1016 AEEEEKVKSLNKLRNKYEAVIADLEDRLKKEEKGRQEMEKMKRKLDgettdlqdqllelqqqieelkQQLARKEEELQAA 1095
Cdd:TIGR04523  366 EEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKD---------------------EQIKKLQQEKELL 424
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1096 LARVDDEVGQKNNLLKQLRDLQSQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTELEDTldstaaQQELRAKREQ- 1174
Cdd:TIGR04523  425 EKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQK------QKELKSKEKEl 498
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1175 -EVTDLKKTIEEDVKVRDAQVTEMRQRHNQVVEEISEQLEQARRFKGNLEKVKQTLESENtdLIKEVKNLQAAKQDSEQR 1253
Cdd:TIGR04523  499 kKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKEN--LEKEIDEKNKEIEELKQT 576
                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1785379715 1254 RKKLEQQVSEFQIRTNESEKVKFELAEKLQKLQAELDGVSGALGSTEGKSIKLTKDLSTVQSQLQDTQELLQ 1325
Cdd:TIGR04523  577 QKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVK 648
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
850-1245 3.50e-09

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 61.98  E-value: 3.50e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  850 QDEVMQAKVVELQKVKDTQVKTEsELKEMANKYQQLFEEKSILAEQLQAETELFAEAEEMRARLASKKQELEEILHDLEA 929
Cdd:PRK02224   327 RDRLEECRVAAQAHNEEAESLRE-DADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPV 405
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  930 RVEEEEERTLQLQNEKKKMHQHIQDLEEQLEEEEGARQKLQ--------------LEKVTTESRLKKMEEDILLLEDQNA 995
Cdd:PRK02224   406 DLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEalleagkcpecgqpVEGSPHVETIEEDRERVEELEAELE 485
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  996 KLAKERKLLDDRIgEFTSTMAEEEEKVKSLNKLRNKYEAVIADLEDRLKKEEKGRQEMEKMKRKLDGETTDLQDQLLELQ 1075
Cdd:PRK02224   486 DLEEEVEEVEERL-ERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAE 564
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1076 QQIEELKQQLARKEEELQAALARVDDevgqknnlLKQLRDLQSQLAELHEDLES---EKAARAKAEKQRRDLGEELEALK 1152
Cdd:PRK02224   565 EEAEEAREEVAELNSKLAELKERIES--------LERIRTLLAAIADAEDEIERlreKREALAELNDERRERLAEKRERK 636
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1153 TELEDTLDStAAQQELRAKREQEVTDLKKtIEEDVKVRDAQVTEMRQRHNQVVEEIsEQLEQARRFKGNLEKVKQTLESe 1232
Cdd:PRK02224   637 RELEAEFDE-ARIEEAREDKERAEEYLEQ-VEEKLDELREERDDLQAEIGAVENEL-EELEELRERREALENRVEALEA- 712
                          410
                   ....*....|...
gi 1785379715 1233 ntdLIKEVKNLQA 1245
Cdd:PRK02224   713 ---LYDEAEELES 722
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
1196-1933 4.12e-09

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 61.62  E-value: 4.12e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1196 EMRQRHNQVVEEISeQLEQARRFKGNLEKVKQTLESEntdlIKEVKNLQAAKQDSEQRRKKLEQQVSEFQIRTNESEKVK 1275
Cdd:PRK03918   142 ESDESREKVVRQIL-GLDDYENAYKNLGEVIKEIKRR----IERLEKFIKRTENIEELIKEKEKELEEVLREINEISSEL 216
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1276 FELAEKLQKLQAELDgvsgalgstegksikltkdlstvqsQLQDTQELLQEETRQKLNFSSRVRQLEEEKNNLMENLEee 1355
Cdd:PRK03918   217 PELREELEKLEKEVK-------------------------ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIE-- 269
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1356 esakaqlsrqlqalqqqllESKKRMEDQGGMVEAMEEAKKKSyKELEFLQQRFDEKHQINDKLEKTRNRLQQELDDLmvd 1435
Cdd:PRK03918   270 -------------------ELKKEIEELEEKVKELKELKEKA-EEYIKLSEFYEEYLDELREIEKRLSRLEEEINGI--- 326
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1436 ldhQRQIvSNLEKKQKKFDQMLAEEKNISARYGEERDRAEAeareketkalslsraLEEAIDLKDELDRQNKQLRAEmdd 1515
Cdd:PRK03918   327 ---EERI-KELEEKEERLEELKKKLKELEKRLEELEERHEL---------------YEEAKAKKEELERLKKRLTGL--- 384
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1516 lvsSKDDVGKNVHELERSKRALEQQVQEMKTQIEELEDELQAIEDGKLRLEvnmqamKAQFERDLQNRDDSNDEKKKLLF 1595
Cdd:PRK03918   385 ---TPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK------KAKGKCPVCGRELTEEHRKELLE 455
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1596 K---QVREMEVELEEERKQKSQILAAKKKLEMDLQDME--SQMDSANKGRDEAVKQLKKLQLQ-FKEVWREVEETRAARD 1669
Cdd:PRK03918   456 EytaELKRIEKELKEIEEKERKLRKELRELEKVLKKESelIKLKELAEQLKELEEKLKKYNLEeLEKKAEEYEKLKEKLI 535
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1670 EIFVQSRDNEKKLKSLEAellqLQEDLAAAERAKRQAQQERDDLADELSNgVSGKSALLDEKRALEMrisqleeeldeeq 1749
Cdd:PRK03918   536 KLKGEIKSLKKELEKLEE----LKKKLAELEKKLDELEEELAELLKELEE-LGFESVEELEERLKEL------------- 597
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1750 sntELINDRYRKLtlqvetittelsaersfsqkaENARQQMERQNKELKVKLNEMDST--MRSKYKITIASLEAKISQLE 1827
Cdd:PRK03918   598 ---EPFYNEYLEL---------------------KDAEKELEREEKELKKLEEELDKAfeELAETEKRLEELRKELEELE 653
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1828 EQMEQESKERIiaNKLVRRAEKRLKEVLLQVEEERRNADQFKEQLEKanirmkqLKRQLEEAeeeaSRANSNRRRLQREL 1907
Cdd:PRK03918   654 KKYSEEEYEEL--REEYLELSRELAGLRAELEELEKRREEIKKTLEK-------LKEELEER----EKAKKELEKLEKAL 720
                          730       740
                   ....*....|....*....|....*..
gi 1785379715 1908 EDVTESAESMNREVTTLRSR-LSKLER 1933
Cdd:PRK03918   721 ERVEELREKVKKYKALLKERaLSKVGE 747
235kDa-fam TIGR01612
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ...
1000-1879 5.99e-09

reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.


Pssm-ID: 130673 [Multi-domain]  Cd Length: 2757  Bit Score: 61.61  E-value: 5.99e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1000 ERKLLDDR--IGEFTSTMAEEEEKVKSLNKLrNKYEAVIADLEDRLkkeEKGRQEMEKMKRKLDGETTDLQDQLLELQQQ 1077
Cdd:TIGR01612  889 EKKFNDSKslINEINKSIEEEYQNINTLKKV-DEYIKICENTKESI---EKFHNKQNILKEILNKNIDTIKESNLIEKSY 964
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1078 IEELKQQLARKEEELQAAL--ARVDDEVGQKNNLLKQLRDLQSQLAELHEDL------ESEKAAR---AKAEKQRRDLGE 1146
Cdd:TIGR01612  965 KDKFDNTLIDKINELDKAFkdASLNDYEAKNNELIKYFNDLKANLGKNKENMlyhqfdEKEKATNdieQKIEDANKNIPN 1044
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1147 ELEALKTELEDTLDstaaqqELRAKREQEVTDLKKTIEEDVKVRDAQVTEMRQR--HNQVVEEISEQleqARRFKGNLEK 1224
Cdd:TIGR01612 1045 IEIAIHTSIYNIID------EIEKEIGKNIELLNKEILEEAEINITNFNEIKEKlkHYNFDDFGKEE---NIKYADEINK 1115
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1225 VKQTLESENTDLIKEVKNLQAAKQDSEQRRKKLEQQVSEFQIRTNES---EKVKfELAEKLQKLQAELDgvsgalgstEG 1301
Cdd:TIGR01612 1116 IKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDLEDVADKAisnDDPE-EIEKKIENIVTKID---------KK 1185
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1302 KSI--KLTKDLSTVqSQLQDTQELLQEETRQKLNFSSRVRQLEEEKNNlmenleeeesakaqlsrqlqalqqqllESKKR 1379
Cdd:TIGR01612 1186 KNIydEIKKLLNEI-AEIEKDKTSLEEVKGINLSYGKNLGKLFLEKID---------------------------EEKKK 1237
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1380 MEDqggMVEAME-------EAKKKSYKELEFLQQRFDEKHQINdklekTRNRLQQELDDLMVDLDHQRQIVSNLEKKQKK 1452
Cdd:TIGR01612 1238 SEH---MIKAMEayiedldEIKEKSPEIENEMGIEMDIKAEME-----TFNISHDDDKDHHIISKKHDENISDIREKSLK 1309
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1453 FDQMLAEEKNISarygEERDRAEAEAREKETKALSLSRALEEAIDLKDELDRQN-KQLRAEMDDLVSSKDDVGKNVH-EL 1530
Cdd:TIGR01612 1310 IIEDFSEESDIN----DIKKELQKNLLDAQKHNSDINLYLNEIANIYNILKLNKiKKIIDEVKEYTKEIEENNKNIKdEL 1385
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1531 ERSKRaLEQQVQEmKTQIEELEDELQAIEDGKLRLEV--NMQAMKAQFERDLQNRD------DSNDEKKKLLFKQVREME 1602
Cdd:TIGR01612 1386 DKSEK-LIKKIKD-DINLEECKSKIESTLDDKDIDECikKIKELKNHILSEESNIDtyfknaDENNENVLLLFKNIEMAD 1463
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1603 VELEEERKQKSQilAAKKKLEMDLQDMESQMDSANKGRDEA---VKQLKKLQLQFKEVWREVEE------TRAARDEIFV 1673
Cdd:TIGR01612 1464 NKSQHILKIKKD--NATNDHDFNINELKEHIDKSKGCKDEAdknAKAIEKNKELFEQYKKDVTEllnkysALAIKNKFAK 1541
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1674 QSRDNEKKLKSLEAELLQLQEDLAAAERAKRQAQQERDDLADELSNGVSGKSALLDEKRALE------MRISQLEEELDE 1747
Cdd:TIGR01612 1542 TKKDSEIIIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSLEnfenkfLKISDIKKKIND 1621
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1748 EQSNTELINDRYRklTLQVETITTELSAERSFSQKAENARQQMERQNKELKVKLNEMDStMRSKykitIASLEAKISQLE 1827
Cdd:TIGR01612 1622 CLKETESIEKKIS--SFSIDSQDTELKENGDNLNSLQEFLESLKDQKKNIEDKKKELDE-LDSE----IEKIEIDVDQHK 1694
                          890       900       910       920       930       940
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1785379715 1828 EQME----QESKERIIANKLVRRAEKRLKEVLLQVEEERRNADQFK-----EQLEKANIRM 1879
Cdd:TIGR01612 1695 KNYEigiiEKIKEIAIANKEEIESIKELIEPTIENLISSFNTNDLEgidpnEKLEEYNTEI 1755
Cast pfam10174
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ...
1082-1486 7.39e-09

RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.


Pssm-ID: 431111 [Multi-domain]  Cd Length: 766  Bit Score: 60.99  E-value: 7.39e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1082 KQQLARKEEELQAALARVDDEVGQkNNLLKQLRD---------------LQSQLAELHEDLESEKAARAKAEKQRRDLGE 1146
Cdd:pfam10174  295 KQELSKKESELLALQTKLETLTNQ-NSDCKQHIEvlkesltakeqraaiLQTEVDALRLRLEEKESFLNKKTKQLQDLTE 373
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1147 ELEALKTELEDTLDSTAAqqelrakREQEVTDLKKTIE---EDVKVRDAQVTEMRQRHNQVVEEISEQ------LEQARR 1217
Cdd:pfam10174  374 EKSTLAGEIRDLKDMLDV-------KERKINVLQKKIEnlqEQLRDKDKQLAGLKERVKSLQTDSSNTdtalttLEEALS 446
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1218 FKGN-LEKVKQTLESENTDLIKEVknlqaakQDSEQRRKKLEQQVSEFQIRTNESEKVKFELAEKLQKLQAELDGVSGAL 1296
Cdd:pfam10174  447 EKERiIERLKEQREREDRERLEEL-------ESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKL 519
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1297 GSTEGKSIKLTKDLSTVQSQLQDTQELlQEETRQKLNFSSRVRQLEEEknnlmENLEEEESAKAQLSRQLQALQQQLLES 1376
Cdd:pfam10174  520 KSLEIAVEQKKEECSKLENQLKKAHNA-EEAVRTNPEINDRIRLLEQE-----VARYKEESGKAQAEVERLLGILREVEN 593
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1377 KKRMEDQggMVEAMEEAKKKSYKELEFLQQRFDEKHQI-------------NDKLEKTRNRLQQELDDLMVDLDHQRQIV 1443
Cdd:pfam10174  594 EKNDKDK--KIAELESLTLRQMKEQNKKVANIKHGQQEmkkkgaqlleearRREDNLADNSQQLQLEELMGALEKTRQEL 671
                          410       420       430       440
                   ....*....|....*....|....*....|....*....|...
gi 1785379715 1444 SNLEKKQKKFDQMLAEEKNISARYGEERDRAEAEAREKETKAL 1486
Cdd:pfam10174  672 DATKARLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQEAL 714
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
860-1316 7.88e-09

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 60.80  E-value: 7.88e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  860 ELQKVKDTQVKTESELKEMANKYQQLFEEKSILAEQLQAETELFAEAEemrarlaskkqELEEILHDLEARVEEEEERTL 939
Cdd:TIGR04523  174 ELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQIS-----------ELKKQNNQLKDNIEKKQQEIN 242
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  940 QLQNEKKKMHQHIQDLEEQLEEEEGARQKLQLEKVTTESRLKKMEEDILLLEDQNAKLAKERKllDDRIGEFTSTMAEEE 1019
Cdd:TIGR04523  243 EKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKE--QDWNKELKSELKNQE 320
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1020 EKVKSLNKLRNKYEAVIADLEDRLKKEEKGRQEMEKMKRKLDGETTDLQDQLLELQQQIEELKQQLARKEEELQAALARV 1099
Cdd:TIGR04523  321 KKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKI 400
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1100 DDEVGQKNNLLKQLRDLQSQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRAKREQEVTDL 1179
Cdd:TIGR04523  401 QNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKI 480
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1180 KKTIEEDVKVRDAQVTEMRQRHNQVVEEISEQLEQARRFKGNLEKVKQtLESENTDLIKEVKNLQAA--KQDSEQRRKKL 1257
Cdd:TIGR04523  481 KQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEK-LESEKKEKESKISDLEDElnKDDFELKKENL 559
                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1785379715 1258 EQQVSEFQIR-------TNESEKVKFELAEKLQKLQAELDGVSGALGSTEGKSIKLTKDLSTVQSQ 1316
Cdd:TIGR04523  560 EKEIDEKNKEieelkqtQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKE 625
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
845-1143 1.20e-08

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 60.50  E-value: 1.20e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  845 LQVTRQDEVMQAKVVELQKVKDTQVKTESELKEMANKYQQLFEEKSILAEQLQAETELFAEAEEMRARLASKKQELEEIL 924
Cdd:COG1196    716 RQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEEL 795
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  925 HDLEARVEEEEERTLQLQNEKKKMHQHIQDLEEQLEEEEGARQKLQLEKVTTESRLKKMEEDILLLEDQNAKLAKERKLL 1004
Cdd:COG1196    796 EELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEEL 875
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1005 DDRIGEFTSTMAEEEEKVKSLNKLRNKYEAVIADLEDRLKKEEkgrqemEKMKRKLDGETTDLQDQLLELQQQIEELKQQ 1084
Cdd:COG1196    876 EDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELE------AKLERLEVELPELEEELEEEYEDTLETELER 949
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1085 LARKEEELQAALARVDDEV-GQKNNLLKQLRDLQSQLAELHEDLESEKAARAKAEKQRRD 1143
Cdd:COG1196    950 EIERLEEEIEALGPVNLRAiEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRE 1009
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
827-1469 1.05e-07

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 57.29  E-value: 1.05e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  827 LKLRHWQWWRLFTKVKPLLQVTRQDEVMQAKVVELQkvkdTQVKTESELKEMANKYQQlfeeKSILAEQLQAETELFAEA 906
Cdd:TIGR00618  238 TQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELR----AQEAVLEETQERINRARK----AAPLAAHIKAVTQIEQQA 309
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  907 EEMRARLASKKQELEEILHDLEARVEEEEERTLQLQNEKKKMHQHIQDLEEQLEEEEGARQKLQleKVTTESRLKKMEED 986
Cdd:TIGR00618  310 QRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQ--QHTLTQHIHTLQQQ 387
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  987 ILLLEDQNAKLAKERKLLDDRIGEFTSTMAEEEE------KVKSLNKLRNKYEAVIADLEDRLKKEEKGRQ-EMEKMKRK 1059
Cdd:TIGR00618  388 KTTLTQKLQSLCKELDILQREQATIDTRTSAFRDlqgqlaHAKKQQELQQRYAELCAAAITCTAQCEKLEKiHLQESAQS 467
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1060 LDGETTDLQDQLLELQQQIEELKQQLARKEE-----------ELQAALARVD-DEVGQKNNLLKQLRDLQSQLAELHEDL 1127
Cdd:TIGR00618  468 LKEREQQLQTKEQIHLQETRKKAVVLARLLElqeepcplcgsCIHPNPARQDiDNPGPLTRRMQRGEQTYAQLETSEEDV 547
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1128 ESEKAARakaEKQRRDLGEELEALKTELEDTLDSTAAQQELRAKREQEVTDLKKTIEEDVKVRDAQVTEMRQRHNQVVEE 1207
Cdd:TIGR00618  548 YHQLTSE---RKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPE 624
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1208 ISEQLEQA--RRFKGNLEKVKQTLESENTDLIKE--VKNLQAAKQDSEQRRKKLEQQVSEFQIRTNESEKVKFELAEKLQ 1283
Cdd:TIGR00618  625 QDLQDVRLhlQQCSQELALKLTALHALQLTLTQErvREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQT 704
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1284 KLQAELDGVSGALGSTEGKSIKLTKDLSTVQSQLQDTQELLQEETRQklnfssRVRQLEEEKNNLMENLEEEESAKAQLS 1363
Cdd:TIGR00618  705 LLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQ------ARTVLKARTEAHFNNNEEVTAALQTGA 778
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1364 RQLQALQQQLLESKKRMEDQGGMVEAMEEAKKKSYkelEFLQQRFDEKHQINDKLEKTRNRLqQELDDLMVDLDHQRQiv 1443
Cdd:TIGR00618  779 ELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIP---SDEDILNLQCETLVQEEEQFLSRL-EEKSATLGEITHQLL-- 852
                          650       660
                   ....*....|....*....|....*.
gi 1785379715 1444 sNLEKKQKKFDQMLAEEKNISARYGE 1469
Cdd:TIGR00618  853 -KYEECSKQLAQLTQEQAKIIQLSDK 877
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
1112-1342 1.18e-07

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 56.57  E-value: 1.18e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1112 QLRDLQSQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTELEdtldstAAQQELRAKREQEVTDLKKTieedvkvrd 1191
Cdd:COG4372     75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQERE------AVRQELAAARQNLAKAQQEL--------- 139
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1192 AQVTEMRQRHNQVVEEISEQLEQARRFKGNLEKVKQTLESENTDLIKEVKNLQAAKQDSEQRRKKLEQQVSEFQIRTnes 1271
Cdd:COG4372    140 ARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQART--- 216
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1785379715 1272 ekvkfelaEKLQKLQAELDGVSGALGSTEGKSIKLTKDLSTVQSQLQDTQELLQEETRQKLNFSSRVRQLE 1342
Cdd:COG4372    217 --------EELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLE 279
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
860-1244 2.04e-07

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 56.18  E-value: 2.04e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  860 ELQKVKDTQVKTESELKEMANKYQQLFEEKSILAEQLqaeTELFAEAEEMRARLASKKQELEEILHDLEARVEEEEertl 939
Cdd:TIGR04523  315 ELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKEL---TNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIK---- 387
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  940 QLQNEKKKMHQHIQDLEEQLEEEegarqklqlekvttESRLKKMEEDILLLEDQNAKLAKERKLLDDRIGEFTSTMAEEE 1019
Cdd:TIGR04523  388 NLESQINDLESKIQNQEKLNQQK--------------DEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKE 453
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1020 EKVKSLNKLRNKYEAVIADLEDRLKKEEkgrQEMEKMKRKLDGETTDLQDQLLELQQQIEELKqQLARKEEELQAALARV 1099
Cdd:TIGR04523  454 LIIKNLDNTRESLETQLKVLSRSINKIK---QNLEQKQKELKSKEKELKKLNEEKKELEEKVK-DLTKKISSLKEKIEKL 529
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1100 DDEVGQKNNllkQLRDLQSQLAELHEDLESEkaaraKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRAKREQEVTDL 1179
Cdd:TIGR04523  530 ESEKKEKES---KISDLEDELNKDDFELKKE-----NLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDL 601
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1785379715 1180 KKTIEEdvkvrdaqvtemrqrHNQVVEEISEQLEQARRFKGNLEKVKQTLESENTDLIKEVKNLQ 1244
Cdd:TIGR04523  602 IKEIEE---------------KEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIK 651
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
1636-1953 2.75e-07

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 55.42  E-value: 2.75e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1636 ANKGRDEAVKQLKKLQLQFKEVWREVEETRAARDEIFVQSRDNEKKLKSLEAELLQLQEDLAAAERAKRQAQQERDDLAD 1715
Cdd:COG4372     65 LNRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTK 144
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1716 ELSNGVSGKSALLDEKRALEMRISQLEEELDEEQSNTELINDRYRKLTLQVETITTElsaersfSQKAENARQQMERQNK 1795
Cdd:COG4372    145 QAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQE-------AQNLATRANAAQARTE 217
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1796 ELkvklnemdstmrSKYKITIASLEAKISQLEEQMEQESKERIIANKLVRRAEKRLKEvllqVEEERRNADQFKEQLEKA 1875
Cdd:COG4372    218 EL------------ARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQR----LETAQARLEQEVAQLEAY 281
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1876 NIRMKQLKRQLEEAEEEASRANSNRRRLQRE--LEDVTESAESMNRevtTLRSRLSKLERQQRKRAPI-QFTTRTIRQVY 1952
Cdd:COG4372    282 YQAYVRLRQQAAATQRGQVLAGAAQRVAQAQaqAQAQAQLLSSANR---PAALRLRRSPRRGRRQRPVtRHTTRRRRPAT 358

                   .
gi 1785379715 1953 Q 1953
Cdd:COG4372    359 R 359
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
1177-1883 2.89e-07

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 55.88  E-value: 2.89e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1177 TDLKKTIEEDVKVRDAQVTEMRQRHNQVVEE---ISEQLEQARRFKGNLEKVKQTLE---SENTDLIKEVKNLQAAKQDS 1250
Cdd:pfam05483   81 SKLYKEAEKIKKWKVSIEAELKQKENKLQENrkiIEAQRKAIQELQFENEKVSLKLEeeiQENKDLIKENNATRHLCNLL 160
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1251 EQRRKKLEQQVSEFQIRTNESEKVKFELAEKLQKLQAELDGVS-GALGSTEGKSIKLTKDLSTVQSQLQDTQELLQEETR 1329
Cdd:pfam05483  161 KETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRvQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEK 240
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1330 QklnFSSRVRQLEEEKNNLMENLEEEESAKAQLSRQLQALQQQLLESKKRMEDQGGMVEAMEEAKKKSYKELEfLQQRFD 1409
Cdd:pfam05483  241 Q---VSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMS-TQKALE 316
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1410 EKHQIndkLEKTRNRLQQELDDLMVDLDHQRQ----IVSNLEKKQKKFDQMLAEEKNisaRYGEERDRAEAEAREKETKa 1485
Cdd:pfam05483  317 EDLQI---ATKTICQLTEEKEAQMEELNKAKAahsfVVTEFEATTCSLEELLRTEQQ---RLEKNEDQLKIITMELQKK- 389
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1486 lslSRALEEAIDLKDELDRQNKQLR---AEMDDLVSSKDDVGKNVHELERSKRALEQQVQEMKTQIEELEDELQAIEDGK 1562
Cdd:pfam05483  390 ---SSELEEMTKFKNNKEVELEELKkilAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSE 466
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1563 LRLEVNMQAMKAQFERDLQNRDDSNDEKKKLLFKQVREMEVELE---EERKQKSQILAAKKKLEMDLQDMESQMDSANKG 1639
Cdd:pfam05483  467 EHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDmtlELKKHQEDIINCKKQEERMLKQIENLEEKEMNL 546
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1640 RDEAVKQLKKLQLQFKEVWREVEETRAARDEIFVQSRDNEKKLKSLEAELLQLQEDLAAAERAKRQAQQERDDLADElsn 1719
Cdd:pfam05483  547 RDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKK--- 623
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1720 gvsgKSALLDEKRALEMRISQLEEELDEEQSNTELINDRYRKlTLQVETITTELSAERSFSQK--AENARQQMERQNKEL 1797
Cdd:pfam05483  624 ----GSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQK-EIEDKKISEEKLLEEVEKAKaiADEAVKLQKEIDKRC 698
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1798 KVKLNEMDSTM---RSKYKITIASLEAKISQLEEQMEQESKERIIANKLVRRAEKRLKEVLLQVEEERRNADQFKEQLEK 1874
Cdd:pfam05483  699 QHKIAEMVALMekhKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKE 778

                   ....*....
gi 1785379715 1875 ANIRMKQLK 1883
Cdd:pfam05483  779 NTAILKDKK 787
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
873-1463 5.84e-07

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 54.64  E-value: 5.84e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  873 SELKEMANKYQQLFEEKSILAEQLQAETELFAEAEEMRARLASKKQELEEILHDLEARVEEEEERTLQLQNEKKKMHQHI 952
Cdd:TIGR04523   89 DKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQK 168
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  953 QDLEEQLEEEEGARQKLQLEKVTTESRLKKMEEDILLLEdqnaKLAKERKLLDDRIGEFTSTMAEEEEKVKSLNKLRNKY 1032
Cdd:TIGR04523  169 EELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLK----KKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEK 244
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1033 EAVIADLEDRLKKEekgRQEMEKMKRKLDGETtdlqdqllelqQQIEELKQQLARKEEELQAALARVDDEVGQKNNLLkq 1112
Cdd:TIGR04523  245 TTEISNTQTQLNQL---KDEQNKIKKQLSEKQ-----------KELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDW-- 308
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1113 LRDLQSQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTELED-TLDSTAAQQELRAKrEQEVTDLKKTIEEDVKvrd 1191
Cdd:TIGR04523  309 NKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNsESENSEKQRELEEK-QNEIEKLKKENQSYKQ--- 384
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1192 aQVTEMRQRHNQVVEEISEQLEQARRFKGNLEKvkqtLESENTDLIKEVKNLQAAKQDSEQRRKKLEQQVSEFQIRTNES 1271
Cdd:TIGR04523  385 -EIKNLESQINDLESKIQNQEKLNQQKDEQIKK----LQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNL 459
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1272 EKVKFELAEKLQKLQAELDGVSGALGSTEGKSIKLTKDLSTVQSQLQDTQELLQEETRQKLNFSSRVRQLEEEKnnlmen 1351
Cdd:TIGR04523  460 DNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEK------ 533
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1352 leeeesakaqlsrQLQALQQQLLESKKRMEDQGGMVEAMEEAKKKSYKELEFLQQRFDEKHQINDKLEKTRNRLQQELDD 1431
Cdd:TIGR04523  534 -------------KEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKD 600
                          570       580       590
                   ....*....|....*....|....*....|....*.
gi 1785379715 1432 LMVDLDHQRQIVSNLEKK----QKKFDQMLAEEKNI 1463
Cdd:TIGR04523  601 LIKEIEEKEKKISSLEKElekaKKENEKLSSIIKNI 636
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
1645-1977 6.99e-07

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 54.68  E-value: 6.99e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1645 KQLKKLQLQfkevwreveeTRAARDEIFVQSRDNEKKLKSLEAELLQLQEDLAAAERAKRQAQQERDDLADELSNGVSGK 1724
Cdd:TIGR02168  200 RQLKSLERQ----------AEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKL 269
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1725 SALLDEKRALEMRIsqleeeldeeqsntELINDRYRKLTLQVETITTELsaersfsQKAENARQQMERQNKELKVKLNEM 1804
Cdd:TIGR02168  270 EELRLEVSELEEEI--------------EELQKELYALANEISRLEQQK-------QILRERLANLERQLEELEAQLEEL 328
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1805 DStMRSKYKITIASLEAKISQLEEQMEQESKERIIANKLVRRAEKRLKEVllqveeerrnadqfKEQLEKANIRMKQLKR 1884
Cdd:TIGR02168  329 ES-KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEL--------------EEQLETLRSKVAQLEL 393
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1885 QLEEAEEEASRANSNRRRLQRELEDVTESAESMNREVTTLRSRLSKLERQQRKRAPIQFTTRTIRQVYQLEAVSDEEPES 1964
Cdd:TIGR02168  394 QIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEA 473
                          330
                   ....*....|...
gi 1785379715 1965 HSGEPSANHQQQQ 1977
Cdd:TIGR02168  474 EQALDAAERELAQ 486
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
1526-1941 3.17e-06

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 52.37  E-value: 3.17e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1526 NVHELERSKRALEQQVQEMKTQIEELEDELQAIEDGKLRLEvnmqAMKAQFERDLQNRDDSNDEKKKL---------LFK 1596
Cdd:PRK03918   156 GLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIK----EKEKELEEVLREINEISSELPELreeleklekEVK 231
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1597 QVREMEVELEEERKQKSQILAAKKKLEMDLQDMESQMDSANKGRDEAVKQLKKLQlQFKEVWREVEETRAARDEIFVQSR 1676
Cdd:PRK03918   232 ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELR 310
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1677 DNEKKLKSLEAELLQLQEDLAAAERAKRQAQQERDDLadelsngvsgkSALLDEKRALEMRISQLEEELDEEqsnTELIN 1756
Cdd:PRK03918   311 EIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKL-----------KELEKRLEELEERHELYEEAKAKK---EELER 376
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1757 DRYRKLTLQVETITTELsaersfsQKAENARQQMERQNKELKVKLNEMDSTMRSKYKITIASLEAKIS------QLEEQM 1830
Cdd:PRK03918   377 LKKRLTGLTPEKLEKEL-------EELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcgrELTEEH 449
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1831 EQESKERIIANklVRRAEKRLKEVLLQVEEERRNADQFKEQLEKAN--IRMKQLKRQLEEAEEEASRANSNR-RRLQREL 1907
Cdd:PRK03918   450 RKELLEEYTAE--LKRIEKELKEIEEKERKLRKELRELEKVLKKESelIKLKELAEQLKELEEKLKKYNLEElEKKAEEY 527
                          410       420       430
                   ....*....|....*....|....*....|....
gi 1785379715 1908 EDVTESAESMNREVTTLRSRLSKLERQQRKRAPI 1941
Cdd:PRK03918   528 EKLKEKLIKLKGEIKSLKKELEKLEELKKKLAEL 561
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
947-1708 3.98e-06

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 52.28  E-value: 3.98e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  947 KMHQHIQDLEEQLEEEEGARQKLQLEKVTTESRLKKMEEDILLLEDQNAKLAKERKLLDDRIGEFTSTMAEEEEKVKSLN 1026
Cdd:TIGR00618  174 PLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQE 253
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1027 KlRNKYEAVIADLEDRLKKEEKGRQEMEKMKRKLDgeTTDLQDQLLELQQQIEELKQQLARKEEELQAALARVDDEVGQK 1106
Cdd:TIGR00618  254 E-QLKKQQLLKQLRARIEELRAQEAVLEETQERIN--RARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKR 330
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1107 NNLLKQLRDLQSQLAELHEDLESEKAARAKAEKQRRDLGEELEAlkTELEDTLDSTAAQQELRAKREQEVTDLKKTIEED 1186
Cdd:TIGR00618  331 AAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQ--HTLTQHIHTLQQQKTTLTQKLQSLCKELDILQRE 408
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1187 VKVRDAQVTEMR-QRHNQVVEEISEQLEQARrfkgnLEKVKQTLESENTDLIKEVKNLQAAKQdSEQRRKKLEQQVSEFQ 1265
Cdd:TIGR00618  409 QATIDTRTSAFRdLQGQLAHAKKQQELQQRY-----AELCAAAITCTAQCEKLEKIHLQESAQ-SLKEREQQLQTKEQIH 482
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1266 IRTNESEKVKFELAEKLQKLQAELDGVSGALGSTEGKSIKLTKDLSTVQSQLQDTQELLQEETRQKLNFSSRVRQLEEEK 1345
Cdd:TIGR00618  483 LQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLK 562
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1346 NNLMENLEEEEsakaqlsrqlqalqqqlleskkrmedqggmveAMEEAKKKSYKELEFLQQRFDEKHQINDKLEKTRNRL 1425
Cdd:TIGR00618  563 EQMQEIQQSFS--------------------------------ILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDML 610
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1426 QQELDDLMVDLDHQrQIVSNLEKKQKKFDQMLAEEKNISARYGEERdraeaeAREKETKALSLSRALEEaidlkdeldRQ 1505
Cdd:TIGR00618  611 ACEQHALLRKLQPE-QDLQDVRLHLQQCSQELALKLTALHALQLTL------TQERVREHALSIRVLPK---------EL 674
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1506 NKQLRAEMDDLVSSKDDVGKNVHELERSKRALeqqvQEMKTQIEELEDELQAIEdgklrlevnmQAMKAQfERDLQNRDD 1585
Cdd:TIGR00618  675 LASRQLALQKMQSEKEQLTYWKEMLAQCQTLL----RELETHIEEYDREFNEIE----------NASSSL-GSDLAARED 739
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1586 SNDEKKKLLFKQVREMEVELEEERKQKSQILAAKKKLEMDLQDMESQMDSANKGRDEAVKQLKKLQLQFKEVWREVEETR 1665
Cdd:TIGR00618  740 ALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDIL 819
                          730       740       750       760
                   ....*....|....*....|....*....|....*....|....
gi 1785379715 1666 AARDEIFVQSRDNEK-KLKSLEAELLQLQEDLAAAERAKRQAQQ 1708
Cdd:TIGR00618  820 NLQCETLVQEEEQFLsRLEEKSATLGEITHQLLKYEECSKQLAQ 863
PRK01156 PRK01156
chromosome segregation protein; Provisional
1390-1933 1.13e-05

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 50.67  E-value: 1.13e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1390 MEEAKKKSYKELEFLQQRFDEKHQINDKLEKTRNRLQQELDDLMVDLDHQRQIVSNL---EKKQKKFDQMLAE-EKNISA 1465
Cdd:PRK01156   188 LEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELsslEDMKNRYESEIKTaESDLSM 267
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1466 RYGEERDRAEAEAREKETKALSLSRALEEAID-LKDELDRQN-KQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQVQE 1543
Cdd:PRK01156   268 ELEKNNYYKELEERHMKIINDPVYKNRNYINDyFKYKNDIENkKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSR 347
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1544 MKtQIEELEDELQAIEDGKLRLEVNMQAMKAQFERDLQNRDDSNDEKKKLLFKQVRemeveleeerkQKSQILAAKKKLE 1623
Cdd:PRK01156   348 YD-DLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEI-----------DPDAIKKELNEIN 415
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1624 MDLQDMESQMDSANKGRDEAVKQLKKLQLQFKEVWRE----VEETRAARDEIFVQSRDNEKKLKSLEAELLQLQEDLAAA 1699
Cdd:PRK01156   416 VKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQsvcpVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDI 495
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1700 ERAKRQAQQERDDLADELSNGVSGKSALLDEKRALEMRISQLEEELDEEQSNTELINDRYRKLTL----QVETITTELSA 1775
Cdd:PRK01156   496 DEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLedldSKRTSWLNALA 575
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1776 ERSfSQKAENARQQMERQNKELK---VKLNEMDSTM---RSKYKITIASLEAKISQLEEQMeQESKERIIANKLVRRAEK 1849
Cdd:PRK01156   576 VIS-LIDIETNRSRSNEIKKQLNdleSRLQEIEIGFpddKSYIDKSIREIENEANNLNNKY-NEIQENKILIEKLRGKID 653
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1850 RLKEVLLQVEEERRNADQFKEQLEKANIRMKQLKRQLeeaeeeaSRANSNRRRLQRELEDVTESAESMNREVTTLRSRLS 1929
Cdd:PRK01156   654 NYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKAL-------DDAKANRARLESTIEILRTRINELSDRINDINETLE 726

                   ....
gi 1785379715 1930 KLER 1933
Cdd:PRK01156   727 SMKK 730
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
1427-1949 1.44e-05

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 50.22  E-value: 1.44e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1427 QELDDLMVDLDHQRQIVSN---LEKKQKKFDQMLAEEKNISARYGEERDRAEAEAREKETKALSLSRALEEAIDLKDELd 1503
Cdd:pfam12128  221 QQVEHWIRDIQAIAGIMKIrpeFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQW- 299
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1504 rqnKQLRAEMD-DLVSSKDDVGKNVHELER-------------SKRALEQ-QVQEMKTQIEELEDELQAIEDGKLRLEVN 1568
Cdd:pfam12128  300 ---KEKRDELNgELSAADAAVAKDRSELEAledqhgafldadiETAAADQeQLPSWQSELENLEERLKALTGKHQDVTAK 376
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1569 MQAMKAQfeRDLQNRDDSNDEKKKLlfkqvremEVELEEERKQKSQILAAKKKLEMDLQD-MESQMDSANKGRDEAVKQL 1647
Cdd:pfam12128  377 YNRRRSK--IKEQNNRDIAGIKDKL--------AKIREARDRQLAVAEDDLQALESELREqLEAGKLEFNEEEYRLKSRL 446
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1648 KKLQLQ-------------------------------FKEVWR---EVEETRAARDEIFVQSRDNEKKLKSLEAELLQLQ 1693
Cdd:pfam12128  447 GELKLRlnqatatpelllqlenfderierareeqeaaNAEVERlqsELRQARKRRDQASEALRQASRRLEERQSALDELE 526
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1694 EDLAAA-----ERAKRQAQQERDDLADELS-------------NGVSGKSAL------LDEKR-----------ALEMRI 1738
Cdd:pfam12128  527 LQLFPQagtllHFLRKEAPDWEQSIGKVISpellhrtdldpevWDGSVGGELnlygvkLDLKRidvpewaaseeELRERL 606
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1739 SQLEEELDEEQSNTELINDRYRKLTLQVETITTELSAERSFSQKAENARQQMERQNKELKVKLNEMDSTMRSKYKITIAS 1818
Cdd:pfam12128  607 DKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNS 686
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1819 LEAKISQLEEQMeQESKERIIANKLVRRAEKrlKEVLLQVEEERRNA-DQFKEQLEKANI----RMKQLKRQLEEAEEEA 1893
Cdd:pfam12128  687 LEAQLKQLDKKH-QAWLEEQKEQKREARTEK--QAYWQVVEGALDAQlALLKAAIAARRSgakaELKALETWYKRDLASL 763
                          570       580       590       600       610
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1785379715 1894 SRANSNRRRLQRELEDVTESAESMNREvttlRSRLSKLERQQRKRAPIQFTTRTIR 1949
Cdd:pfam12128  764 GVDPDVIAKLKREIRTLERKIERIAVR----RQEVLRYFDWYQETWLQRRPRLATQ 815
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
1100-1960 1.46e-05

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 50.22  E-value: 1.46e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1100 DDEVGQKNNLLKqlRDLQSQLAELHEDLESEKAARAKAEKQRRDLgEELEALKTELEDTLDSTAAQQELRAKREQEVTDL 1179
Cdd:pfam12128  208 DDGVVPPKSRLN--RQQVEHWIRDIQAIAGIMKIRPEFTKLQQEF-NTLESAELRLSHLHFGYKSDETLIASRQEERQET 284
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1180 KKTIEEDVKVRDAQVTEMRQRHNQvveEISEQLEQARRFKGNLEKVkqtlesentdlikEVKNLQAAKQDSEQRRKKLEQ 1259
Cdd:pfam12128  285 SAELNQLLRTLDDQWKEKRDELNG---ELSAADAAVAKDRSELEAL-------------EDQHGAFLDADIETAAADQEQ 348
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1260 QVSeFQIRTNESEKVKFELAEKLQKLQAELDGVSGALGSTEGKSIKLTKDLSTVQSQLQDTQELLQEETRQKLNFSSRvR 1339
Cdd:pfam12128  349 LPS-WQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELR-E 426
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1340 QLEEEKNNLMENLEEEESAkAQLSRQLQALQQQLLESKKRMEDQGGMVEAMEEAKKKSYKELEFLQQ-------RFDEKH 1412
Cdd:pfam12128  427 QLEAGKLEFNEEEYRLKSR-LGELKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSelrqarkRRDQAS 505
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1413 QINDKLEKTRNRLQQELDDLMVDLDHQR-QIVSNLEKKQKKFDQMLAEEKNISARYGEERDRAEAEAREKETKALSLSRA 1491
Cdd:pfam12128  506 EALRQASRRLEERQSALDELELQLFPQAgTLLHFLRKEAPDWEQSIGKVISPELLHRTDLDPEVWDGSVGGELNLYGVKL 585
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1492 LEEAIDLKDELDrQNKQLRAEMDDLVSSKDDvgknvhELERSKRALEQQVQ---EMKTQIEELEDELQAIEDGKL---RL 1565
Cdd:pfam12128  586 DLKRIDVPEWAA-SEEELRERLDKAEEALQS------AREKQAAAEEQLVQangELEKASREETFARTALKNARLdlrRL 658
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1566 EVNMQAMKAQFERDLQNRDDS--------NDEKKKLLFKQVREMEVELEEERKQKSQILAAKKKLEMDLQDMESQMDSAN 1637
Cdd:pfam12128  659 FDEKQSEKDKKNKALAERKDSanerlnslEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAI 738
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1638 KGRDEAVK-QLKKLqlqfkEVWREVEETRAARDEIFVQSRdnEKKLKSLEAELLQLQEDLAAAERAKRQAQ----QERDD 1712
Cdd:pfam12128  739 AARRSGAKaELKAL-----ETWYKRDLASLGVDPDVIAKL--KREIRTLERKIERIAVRRQEVLRYFDWYQetwlQRRPR 811
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1713 LADELSNgvsgksallDEKRALEMRISQLEEELDEEQSNTELINDRYRKLTLQVEtITTELSAERSFSQKAenARQQMER 1792
Cdd:pfam12128  812 LATQLSN---------IERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVR-LSENLRGLRCEMSKL--ATLKEDA 879
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1793 QNKELKVKLNEMD---STMRSKYKITIASLEAKISQLEEQMEQESKERIIANKLVRRAEKRLKEVLLQVEEERRNADQFK 1869
Cdd:pfam12128  880 NSEQAQGSIGERLaqlEDLKLKRDYLSESVKKYVEHFKNVIADHSGSGLAETWESLREEDHYQNDKGIRLLDYRKLVPYL 959
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1870 EQLekANIRMKQLKRQLEEAEEEASRANSNrrrLQRELEDVTESAESMNREVTTLRSRLSKLERQQRKRAPIQFTTRTIR 1949
Cdd:pfam12128  960 EQW--FDVRVPQSIMVLREQVSILGVDLTE---FYDVLADFDRRIASFSRELQREVGEEAFFEGVSESAVRIRSKVSELE 1034
                          890
                   ....*....|.
gi 1785379715 1950 QVYQLEAVSDE 1960
Cdd:pfam12128 1035 YWPELRVFVKA 1045
Motor_domain cd01363
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ...
657-681 1.76e-05

Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.


Pssm-ID: 276814 [Multi-domain]  Cd Length: 170  Bit Score: 46.95  E-value: 1.76e-05
                           10        20
                   ....*....|....*....|....*
gi 1785379715  657 YKESLSKLMSTLRNTNPNFVRCIIP 681
Cdd:cd01363    146 INESLNTLMNVLRATRPHFVRCISP 170
COG5281 COG5281
Phage-related minor tail protein [Mobilome: prophages, transposons];
1083-1546 2.33e-05

Phage-related minor tail protein [Mobilome: prophages, transposons];


Pssm-ID: 227606 [Multi-domain]  Cd Length: 833  Bit Score: 49.64  E-value: 2.33e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1083 QQLARKEEELQAALARVDDEVGQKNNLLKQLRDLQ-SQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTELEDTLDS 1161
Cdd:COG5281    233 EQLGDVAQAAARFASASGESIDKTIKAFSKLTDDPvNGAKALNRQFHYLTAAQLEQIAALQRAGDTAAAAAAAAEAAAAM 312
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1162 TAAQQELRAKREQEVTDLKKTIEEDVKVRDAQVTEMRQRHNQVVEEISEQLEQARRFKGNLEKVKQTLESENTDLIKEVk 1241
Cdd:COG5281    313 DDRTARVKENMGTLETAWDALADAAKKMWDAVLGIGREDKQAALLAAKLAAEKLARVTAQGALNARLKLAQDDLTQAEL- 391
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1242 NLQAAKQDSEQRRKKLEQQVSEFQIRTNEsekvKFELAEKLQKLQAEldgVSGALGSTEGKSIKLTKDLSTVQSQLQDTQ 1321
Cdd:COG5281    392 NYAAADQAANQEGALNAREDEAEVLSTQE----ERRDILKNLLADAE---KRTARQEELNKALAKAKILQADKAAKAYQE 464
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1322 ELLQEETRQKLNFSSRVRQLEEEKNNLMENLEEeesakaqlsrqlqalqqqllesKKRMEDQGGMVEAMEEAKKKSYKEL 1401
Cdd:COG5281    465 DILQREAQSRGKTAAAERSQEQMTAALKALLAF----------------------QQQIADLSGAKEKASDQKSLLWKAE 522
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1402 EFLQQRFDEKHQINDKLEKTRNRLQQELddlmvdLDHQRQIVSNLEKKQKKFDQMLAEeknisarYGEERDRAEAEAREK 1481
Cdd:COG5281    523 EQYALLKEEAKQRQLQEQKALLEHKKET------LEYTSQLAELLDQQADRFELSAQA-------AGSQKERGSDLYREA 589
                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1785379715 1482 ET-KALSLSRALEEAIDLKDELDRQNKQLRAEMDDLVSSKDDVGKNVHELERSKR-----ALEQQVQEMKT 1546
Cdd:COG5281    590 LAqNAAALNKALNELAAYWSALDLLQGDWKAGALSALANYRDSATDVASQAAQLFtnafdGMANNAAKFAT 660
46 PHA02562
endonuclease subunit; Provisional
1416-1596 2.98e-05

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 48.86  E-value: 2.98e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1416 DKLEKTRNR-LQQELDDLMVDLDH-QRQIVS--------------NLEKKQKKFDQMLAEEKNISARYGEERDRAEAEAR 1479
Cdd:PHA02562   169 DKLNKDKIReLNQQIQTLDMKIDHiQQQIKTynknieeqrkkngeNIARKQNKYDELVEEAKTIKAEIEELTDELLNLVM 248
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1480 EKETKALSLSRALEEAIDLKDELDRQNK---------------QLRAEMDDLVSSKDDVGKNV-HELERSKRALEQ---- 1539
Cdd:PHA02562   249 DIEDPSAALNKLNTAAAKIKSKIEQFQKvikmyekggvcptctQQISEGPDRITKIKDKLKELqHSLEKLDTAIDEleei 328
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1785379715 1540 ---------QVQEMKTQIEELEDELQAIEDGKLRLEVNMQAMKAQFERDLQNRDDSNDEKKKLLFK 1596
Cdd:PHA02562   329 mdefneqskKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKT 394
NtpI COG1269
Archaeal/vacuolar-type H+-ATPase subunit I/STV1 [Energy production and conversion];
997-1286 3.23e-05

Archaeal/vacuolar-type H+-ATPase subunit I/STV1 [Energy production and conversion];


Pssm-ID: 224188 [Multi-domain]  Cd Length: 660  Bit Score: 48.90  E-value: 3.23e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  997 LAKERKLLDDRIGEFTSTMAEE-EEKVKSLNKL-----RNKYEAVIADLEDRLKKEEKGRQEMEKMKRKLDGEttdlqdq 1070
Cdd:COG1269     14 LKSELDPVLAELHDFGLVHLEDlEEGEKGLKELeklkvAEVAQISLSSLLSEVLDYLRSVKGLEGRLFILPEE------- 86
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1071 llelqqqieelKQQLARKEEELQAALARVDDEVGQKNNLLKQLRDLQSQLAELHEDLESEKAARAKAEkqrrDLGEELEA 1150
Cdd:COG1269     87 -----------VEKLEAELKSLEEVIKPAEKFSSEVEELTRKLEERLSELDEELEDLEDLLEELEPLA----YLDFDLSL 151
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1151 LKTELEDTLDSTAAQQELRAKREQEVTDLKKTIEEDVKVRDAQVTEMRQRHNQVVEEISEQLEqARR-----FKGNLEKV 1225
Cdd:COG1269    152 LRGLKFLLVRLGLVRREKLEALVGVIEDEVALYGENVEASVVIVVAHGAEDLDKVSKILNELG-FELyevpeFDGGPSEL 230
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1785379715 1226 KQTLESENTDLIKEVKNLQAAKQD-SEQRRKKLeqqvsEFQIRTNESEKVKFELAEKLQKLQ 1286
Cdd:COG1269    231 ISELEEVIAEIQDELESLRSELEAlAEKIAEEL-----LAVREILEIEKALGDVLSKLARTE 287
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
764-1125 4.79e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 48.51  E-value: 4.79e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  764 GQSKIFFRAGVLAHLEEERDLKITDIIVFFQAAARgylARRAFYKKQQQMSALKVVQRNCAAYLKLRHWQWWRLFTKVKP 843
Cdd:TIGR02168  668 TNSSILERRREIEELEEKIEELEEKIAELEKALAE---LRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ 744
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  844 LLQ-VTRQDEVMQAKVVELQKVKDTQVKTESELKEMANKYQQLFEEKSILAEQLQAETELFAEAEEMRARLASKKQELEE 922
Cdd:TIGR02168  745 LEErIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE 824
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  923 ILHDLEARVEEEEERTLQLQNEKKKMHQHIQDLEEQLEEEEGARQKLQLEKVTTESRLKKMEEDILLLEDQNAKLAKERK 1002
Cdd:TIGR02168  825 RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR 904
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1003 LLDDRIGEFTSTMAEEEEKVKSLNKLRNKYEAVIADLEDRLKkeEKGRQEMEKMKRKldgettdlqdqLLELQQQIEELK 1082
Cdd:TIGR02168  905 ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS--EEYSLTLEEAEAL-----------ENKIEDDEEEAR 971
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1083 QQLARKEEELQ-------AALARVDDEVGQKNNLLKQLRDLQSQLAELHE 1125
Cdd:TIGR02168  972 RRLKRLENKIKelgpvnlAAIEEYEELKERYDFLTAQKEDLTEAKETLEE 1021
PLN02939 PLN02939
transferase, transferring glycosyl groups
896-1188 5.78e-05

transferase, transferring glycosyl groups


Pssm-ID: 215507 [Multi-domain]  Cd Length: 977  Bit Score: 48.36  E-value: 5.78e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  896 LQAETELFAEAEEMRARLASKKQELEEILHDLEARVEEEEERTLQLQNEKKKMHQHIQDLEEQLEEEEGARQKLQLEKVT 975
Cdd:PLN02939   102 MQRDEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSE 181
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  976 TESRLKKMEE---DILLLEDQNAKLAKERKLLDDRIGEFTSTMAEEEEKVKSLN-KLRNKYEAV------IADLEDRLKK 1045
Cdd:PLN02939   182 TDARIKLAAQekiHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENmLLKDDIQFLkaelieVAETEERVFK 261
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1046 EEKGRQEMEKMKRKLDgetTDLQDQLLELQQQIEELKQQLARKEEELQAALARVDDEVGQKNNLLKQLRDLQSQLAELHE 1125
Cdd:PLN02939   262 LEKERSLLDASLRELE---SKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEA 338
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1785379715 1126 DLESEKAARAKAEKQRRdLGEELEALKTELEDTLDSTAAQQELRAKREQEVTD-LKKTIEEDVK 1188
Cdd:PLN02939   339 SLKEANVSKFSSYKVEL-LQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDtLSKLKEESKK 401
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
1022-1289 6.30e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 47.79  E-value: 6.30e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1022 VKSLNKLRNKYEAVIADLEDRLKKEEKGRQEMEKMKRKLDGETTDLQDQLLELQQQIEELKQQLARKEEELQAALARvdd 1101
Cdd:COG4942     33 AAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ--- 109
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1102 EVGQKNNLLKQLRDLQSQ-----LAELHEDLESEKAARAKAEKQR--RDLGEELEALKTELEDTLDSTAAQQELRAKREQ 1174
Cdd:COG4942    110 EREQRRRLAEQLAALQRSgrnppPALLVSPEDAQRSVRLAIYYGAlnPARAERIDALKATLKQLAAVRAEIAAEQAELTT 189
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1175 EVTDLKKTIEEDVKVRDAQvTEMRQRHNQVVEEISEQLEQARRFKGNLEKVKQTLESENTdlikEVKNLQAAKQDSEQRR 1254
Cdd:COG4942    190 LLSEQRAQQAKLAQLLEER-KKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA----KAREAAAAAEAAAARA 264
                          250       260       270
                   ....*....|....*....|....*....|....*
gi 1785379715 1255 KKLEQQVSEFQIRTNESEKVKFELAEKLQKLQAEL 1289
Cdd:COG4942    265 RAAEAKRTGETYKPTAPEKMLISSTGGFGALRGQL 299
MscK COG3264
Small-conductance mechanosensitive channel [Cell wall/membrane/envelope biogenesis];
1107-1333 8.66e-05

Small-conductance mechanosensitive channel [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 225803 [Multi-domain]  Cd Length: 835  Bit Score: 47.76  E-value: 8.66e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1107 NNLLKQLRDLQSQLAELhedlesEKAARAKAEKQRRDLGEEL---EALKTELEDTLDSTAAQQELraKREQEVTDLKKTI 1183
Cdd:COG3264      6 NNVLQELLQSRRELLTA------ESAQLEAALQLLQEAVNSKrqeEAEPAAEEAELQAELIQQEL--AINDQLSQALNQQ 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1184 EEDVKV---RDAQVTEMRQRhnqvVEEISEQL-EQARRFKGNLEKVKQtlesentdLIKEVKNLQAAKQDSEQrrkkleq 1259
Cdd:COG3264     78 TERLNAlasDDRQLANLLLQ----LLQSSRTIrEQIAVLRGSLLLSRI--------LLQQLGPLPEAGQPQEQ------- 138
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1260 qvsefqirtnesekvkFELAEKLQKLQAELDGVSGALGSTEGKSIKLTKDLSTV-----------------------QSQ 1316
Cdd:COG3264    139 ----------------FEVTQERDALQAEKAYINALEGQAEQLTAEVRDILDQIldtrrellnsllsqreaislqlnQQQ 202
                          250
                   ....*....|....*..
gi 1785379715 1317 LQDTQELLQEETRQKLN 1333
Cdd:COG3264    203 LSAASDELRSLLHQQSF 219
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
1387-1578 9.29e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 47.02  E-value: 9.29e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1387 VEAMEEAKKKSYKELEFLQQRFDEKHQINDKLEKTRNRLQQELDDLmvdlDHQ-RQIVSNLEKKQKKFDQMLAEEKNISA 1465
Cdd:COG4942     33 AAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASL----EAQlIETADDLKKLRKQIADLNARLNALEV 108
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1466 RYGEERDRAEA---------------------EAREKETKALSLSRALEEAIDLKDELDRQNKQLRAEMDDLVSSKDDVG 1524
Cdd:COG4942    109 QEREQRRRLAEqlaalqrsgrnpppallvspeDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELT 188
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1785379715 1525 KNVHELERSKRALEQQVQEMKTQIEELEDELQAIEDGKLRLEVNMQAMKAQFER 1578
Cdd:COG4942    189 TLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIAS 242
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
1387-1960 9.76e-05

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 47.73  E-value: 9.76e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1387 VEAMEEAKKKSYKELEFLQQRFDEKHQINDKLEKTRNRLQQELDDLMVDLDHQRQIVSNlEKKQKKFDQMLAEEKNISAR 1466
Cdd:TIGR00606  257 IEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVR-EKERELVDCQRELEKLNKER 335
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1467 YGEERDRAEAEAREKEtkaLSLSRALEEAIDLKDELDRQNKQLRAEMDDLVSSKDDVG--KNVHELERskralEQQVQEM 1544
Cdd:TIGR00606  336 RLLNQEKTELLVEQGR---LQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERqiKNFHTLVI-----ERQEDEA 407
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1545 KTqIEELEDELQAIEDGKLRLEVNMQAMKAQFERDLQNrddsndEKKKLLFKQVREMEVELEEERKQKSqilaAKKKLEM 1624
Cdd:TIGR00606  408 KT-AAQLCADLQSKERLKQEQADEIRDEKKGLGRTIEL------KKEILEKKQEELKFVIKELQQLEGS----SDRILEL 476
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1625 DLQDMESQMDSANKGRDEAVKQLKKLQLQFKEVWREVEETRAARDEIFVQSRDNEKKLKSLEaelLQLQEDLAAAERAKR 1704
Cdd:TIGR00606  477 DQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQME---MLTKDKMDKDEQIRK 553
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1705 QAQQERDDLADELSNGVSGK------SALLDEKRALEMRISQLEEELDEEQSNTELINDRYRKLTLQVETITT---ELSA 1775
Cdd:TIGR00606  554 IKSRHSDELTSLLGYFPNKKqledwlHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDklfDVCG 633
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1776 ERSFSQKAENARQQMERQNKELKVklnemdstmrskykitIASLEAKISQLEEQMEQESKERIIANKLVRRAEKRLKEVL 1855
Cdd:TIGR00606  634 SQDEESDLERLKEEIEKSSKQRAM----------------LAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFI 697
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1856 LQVEEERRNADQFKEQLEKaniRMKQLKRQLEEAEEEASRANSNRRRLQRELEDVTESAESMNREVTTLRSRLSKLERQ- 1934
Cdd:TIGR00606  698 SDLQSKLRLAPDKLKSTES---ELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLl 774
                          570       580       590
                   ....*....|....*....|....*....|.
gi 1785379715 1935 -----QRKRAPIQFTTRTIRQVYQLEAVSDE 1960
Cdd:TIGR00606  775 gtimpEEESAKVCLTDVTIMERFQMELKDVE 805
PLN03229 PLN03229
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
967-1309 1.15e-04

acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional


Pssm-ID: 178768 [Multi-domain]  Cd Length: 762  Bit Score: 47.16  E-value: 1.15e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  967 QKLQLEKVTTESRLKKMEEDILLledqnaklaKERKLLDDRIGEFTSTMAEEEEKVKSLnKLRNKYEAVIADLEDRLKK- 1045
Cdd:PLN03229   372 QQIKIAINENMDELGKMDTEELL---------KHRMLKFRKIGGFQEGVPVDPERKVNM-KKREAVKTPVRELEGEVEKl 441
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1046 ---------------EEKGRQEMEKMKRKLDGETTDLQDQLLELQQQIEEL-----------------KQQLARKEEELQ 1093
Cdd:PLN03229   442 keqilkakessskpsELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLReefskansqdqlmhpvlMEKIEKLKDEFN 521
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1094 AALARVDDEVGQKNNLlKQLRDLQ-----SQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTELEDTLDSTAAqqEL 1168
Cdd:PLN03229   522 KRLSRAPNYLSLKYKL-DMLNEFSrakalSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEALKAEVASSGASSGD--EL 598
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1169 RAKREQEVTDLKKTIEEDV----KVRDAQVTEMRQRHNQVVEEISEQleqarRFKGNLEKVKQTLESENTDLIK--EVKN 1242
Cdd:PLN03229   599 DDDLKEKVEKMKKEIELELagvlKSMGLEVIGVTKKNKDTAEQTPPP-----NLQEKIESLNEEINKKIERVIRssDLKS 673
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1785379715 1243 ------LQAAK------QDSEQRRKKLEQQVSEfQIRTNESEKvkfELAEKLQKLQAELdgvSGALGSTEGKSIKLTKD 1309
Cdd:PLN03229   674 kiellkLEVAKasktpdVTEKEKIEALEQQIKQ-KIAEALNSS---ELKEKFEELEAEL---AAARETAAESNGSLKND 745
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
1542-1935 1.17e-04

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 47.32  E-value: 1.17e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1542 QEMKTQIEELEDELQAIEDGKLRLEVNMQAMKAQFERDLQNRDD--SNDEKKKLLFKQVREMEVELEEERKQKSQILAAK 1619
Cdd:TIGR04523  162 NDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNlkKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEI 241
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1620 KKLEMDLQDMESQMDSANKGRDEAVKQLKKLQLQFKEvwreveetraardeifvqsrdNEKKLKSLEAELLQLQEDLaaa 1699
Cdd:TIGR04523  242 NEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQ---------------------NNKKIKELEKQLNQLKSEI--- 297
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1700 ERAKRQAQQERD-DLADELSNgvsgksaLLDEKRALEMRISQleeeldeeqsNTELINdryrKLTLQVETITTELSAERS 1778
Cdd:TIGR04523  298 SDLNNQKEQDWNkELKSELKN-------QEKKLEEIQNQISQ----------NNKIIS----QLNEQISQLKKELTNSES 356
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1779 FSQKAENarqQMERQNKELKVKLNEMDSTMRSKYKIT--IASLEAKIS---QLEEQMEQESKERIIANKLVRRAEKRLKE 1853
Cdd:TIGR04523  357 ENSEKQR---ELEEKQNEIEKLKKENQSYKQEIKNLEsqINDLESKIQnqeKLNQQKDEQIKKLQQEKELLEKEIERLKE 433
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1854 VLLQVEEERRNAD----QFKEQLEKANIRMKQLKRQLEEAEEEASRANSNRRRLQRELEDVTESAESMNREVTTLRSRLS 1929
Cdd:TIGR04523  434 TIIKNNSEIKDLTnqdsVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVK 513

                   ....*.
gi 1785379715 1930 KLERQQ 1935
Cdd:TIGR04523  514 DLTKKI 519
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
846-1305 1.24e-04

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 47.40  E-value: 1.24e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  846 QVTRQDEVMQAKVVELQKVKDTQVKTESElKEMANKYQQLFEEKSI---------------LAEQLQAETELFAEAEEMR 910
Cdd:pfam15921  445 QMERQMAAIQGKNESLEKVSSLTAQLEST-KEMLRKVVEELTAKKMtlessertvsdltasLQEKERAIEATNAEITKLR 523
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  911 ARLASKKQELEEILHDLE-ARVEEEEERTLQLQNEKKK-----MHQHIQDLEEQLEEEEGARQKLQLEKVTTESRLKKME 984
Cdd:pfam15921  524 SRVDLKLQELQHLKNEGDhLRNVQTECEALKLQMAEKDkvieiLRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRR 603
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  985 edillLEDQNAKLAKERKllDDRIGEFTSTMAE-EEEKVKSLNKLRNKYEAViadledrlkkeekgrQEMEKMKRKLDGE 1063
Cdd:pfam15921  604 -----LELQEFKILKDKK--DAKIRELEARVSDlELEKVKLVNAGSERLRAV---------------KDIKQERDQLLNE 661
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1064 TTDLQDQLLELQQQIEELKQQLARKEEELQAAlarvddevgqKNNLLKQLRDLQSQLAELHEDLESEKAARAKAEKQrrd 1143
Cdd:pfam15921  662 VKTSRNELNSLSEDYEVLKRNFRNKSEEMETT----------TNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKV--- 728
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1144 lgeelealkteledtldSTAAQQELRAKREQeVTDLKKTI---EEDVKVRDAQVTEMRQRHNQVVEEISEQLEQARRFKG 1220
Cdd:pfam15921  729 -----------------AMGMQKQITAKRGQ-IDALQSKIqflEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAG 790
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1221 NLEkvkqTLESENTDLIKEVKNLQAAKQdseqrrkKLEQQVSEFQ--IRTNESEKVKFELAEKLQklQAELDGVsgalGS 1298
Cdd:pfam15921  791 ELE----VLRSQERRLKEKVANMEVALD-------KASLQFAECQdiIQRQEQESVRLKLQHTLD--VKELQGP----GY 853

                   ....*..
gi 1785379715 1299 TEGKSIK 1305
Cdd:pfam15921  854 TSNSSVK 860
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
1626-1862 1.31e-04

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 46.96  E-value: 1.31e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1626 LQDMESQMdsANKGRDEAVKQLKKLQLQFKEVWREVE----------ETRAARDEIFVQSRDNEKKLKSLEAELLQLQED 1695
Cdd:PRK02224   189 LDQLKAQI--EEKEEKDLHERLNGLESELAELDEEIEryeeqreqarETRDEADEVLEEHEERREELETLEAEIEDLRET 266
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1696 LAAAERakrqaqqERDDLADElsngVSGKSALLDEkraLEMRISQLEEELDEEQSNTELINDRYRKLTLQVETITTELSA 1775
Cdd:PRK02224   267 IAETER-------EREELAEE----VRDLRERLEE---LEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEE 332
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1776 ER----SFSQKAENARQ---QMERQNKELKVKLNEMDSTMRSKyKITIASLEAKISQLEEQMEQESKERIIANKLVRRAE 1848
Cdd:PRK02224   333 CRvaaqAHNEEAESLREdadDLEERAEELREEAAELESELEEA-REAVEDRREEIEELEEEIEELRERFGDAPVDLGNAE 411
                          250
                   ....*....|....
gi 1785379715 1849 KRLKEVLLQVEEER 1862
Cdd:PRK02224   412 DFLEELREERDELR 425
CwlO1 COG3883
Uncharacterized N-terminal domain of peptidoglycan hydrolase CwlO [Function unknown];
1107-1289 1.64e-04

Uncharacterized N-terminal domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 226400 [Multi-domain]  Cd Length: 265  Bit Score: 45.48  E-value: 1.64e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1107 NNLLKQLRDLQSQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRAKREQEV-TDLKKTIEE 1185
Cdd:COG3883     41 SELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMqVNGTATSYI 120
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1186 DVKVRDAQVTEMRQRhnqvVEEISEQLEQARRFKGNLEKVKQTLESENTDLIKEVKNLQAAKQDSEQRRKKLEQQVsefq 1265
Cdd:COG3883    121 DVILNSKSFSDLISR----VTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQK---- 192
                          170       180
                   ....*....|....*....|....
gi 1785379715 1266 irtNESEKVKFELAEKLQKLQAEL 1289
Cdd:COG3883    193 ---AEKNALIAALAAKEASALGEK 213
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
1632-1965 2.20e-04

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 46.27  E-value: 2.20e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1632 QMDSANKGRDEAVKQLKKLQLQFKEVWREVEETRAARD-EIFVQSR---DNEKKLKSLEAELLQLQEDlaaaERAKRQAQ 1707
Cdd:pfam17380  289 QQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQaEMDRQAAiyaEQERMAMERERELERIRQE----ERKRELER 364
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1708 QERDDLADELSNGVSGKSALLDEKRALEmRISQLEEELDEEQSNTElinDRYRKLTLQVETITtELSAERSFSQKAENAR 1787
Cdd:pfam17380  365 IRQEEIAMEISRMRELERLQMERQQKNE-RVRQELEAARKVKILEE---ERQRKIQQQKVEME-QIRAEQEEARQREVRR 439
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1788 QQMERQNKELKVKLNEMDstmRSKYKITIASLEAKISQLEEQMEQESKERIIANKLVRRA-EKRLKEVLLQ-VEEERRNA 1865
Cdd:pfam17380  440 LEEERAREMERVRLEEQE---RQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKIlEKELEERKQAmIEEERKRK 516
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1866 DQFKEQLEKANIRMKQLKRQLEEAEEEASRANSNRRRLQRELEDVTESA---ESMNREVTTLRSRLSKLERQQRKRAPIQ 1942
Cdd:pfam17380  517 LLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERsrlEAMEREREMMRQIVESEKARAEYEATTP 596
                          330       340
                   ....*....|....*....|....*
gi 1785379715 1943 FTtrTIRQVYQLEAVSDEEP--ESH 1965
Cdd:pfam17380  597 IT--TIKPIYRPRISEYQPPdvESH 619
PTZ00121 PTZ00121
MAEBL; Provisional
840-1278 2.32e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 46.29  E-value: 2.32e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  840 KVKPLLQVTRQDEVMQAKVVELQKVKDTQVKTESELKEMANKYQQLFEEKSILAEQLQAETELFAEAEEMRarlasKKQE 919
Cdd:PTZ00121  1556 ELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK-----KAEE 1630
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  920 leeilhdlearveeeeertlqlqnEKKKMHQhiqdleeqleeeegaRQKLQLEKVTTESRLKKMEEDILLLEDQNAKLAK 999
Cdd:PTZ00121  1631 ------------------------EKKKVEQ---------------LKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAE 1671
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1000 ERKLLDDRIGEftstmAEEEEKVKslnklrnkyeaviadlEDRLKKEEKGRQEMEKMKRKlDGETTDLQDQLLELQQQIE 1079
Cdd:PTZ00121  1672 EDKKKAEEAKK-----AEEDEKKA----------------AEALKKEAEEAKKAEELKKK-EAEEKKKAEELKKAEEENK 1729
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1080 ELKQQLARKEEELQAALARVDDEVGQKNnllkQLRDLQSQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTeLEDTL 1159
Cdd:PTZ00121  1730 IKAEEAKKEAEEDKKKAEEAKKDEEEKK----KIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKK-IKDIF 1804
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1160 DSTAAQQELRAKREQEVTDLKKTieedvkvRDAQVTEMRQRHNQVVEEiSEQLEQARRFKGNLEKVKQTLES----ENTD 1235
Cdd:PTZ00121  1805 DNFANIIEGGKEGNLVINDSKEM-------EDSAIKEVADSKNMQLEE-ADAFEKHKFNKNNENGEDGNKEAdfnkEKDL 1876
                          410       420       430       440
                   ....*....|....*....|....*....|....*....|...
gi 1785379715 1236 LIKEVKNLQAAKQDSEQRRKKLEQQVSEFQIRTNESEKVKFEL 1278
Cdd:PTZ00121  1877 KEDDEEEIEEADEIEKIDKDDIEREIPNNNMAGKNNDIIDDKL 1919
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
1460-1675 2.76e-04

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 225288 [Multi-domain]  Cd Length: 652  Bit Score: 45.85  E-value: 2.76e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1460 EKNISaRYGEERDRAEAEAREkeTKALSLSRALEEAIDLKDELDRQNKQLRAEMDDLVSSKD--DVGKNVHELERSKRAL 1537
Cdd:COG2433    365 ERKLP-ELGIWKDVERIKALV--IRGYPLAEALSKVKEEERPREKEGTEEEERREITVYEKRikKLEETVERLEEENSEL 441
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1538 EQQVQEMKTQIEELEDELQAIEDgklRLEVnmqamKAQFERDLQNRDDSNDEKKKLLfkqvremeveleeeRKQKSQILA 1617
Cdd:COG2433    442 KRELEELKREIEKLESELERFRR---EVRD-----KVRKDREIRARDRRIERLEKEL--------------EEKKKRVEE 499
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1618 AKKKLE--MDLQDMESQmdsankGRDEAVKQLKKLQLQFKEVwREVEETRAARDEIFVQS 1675
Cdd:COG2433    500 LERKLAelRKMRKLELS------GKGTPVKVVEKLTLEAIEE-AEEEYGIKEGDVILVED 552
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
1115-1919 4.30e-04

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 45.42  E-value: 4.30e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1115 DLQSQLAELHEDLESEKAARAKAEKQRRDLGE---ELEALKTELEDTLDSTAAQQELRAKREQEVTDLKKTIEEDVKVRD 1191
Cdd:TIGR00606  221 EIRDQITSKEAQLESSREIVKSYENELDPLKNrlkEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTD 300
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1192 AQVTEMRQRHNQVVEEISEQLEQARRFKGNLEKVKQTLESENTDLIKEV--KNLQAAKQDSEQRRKKLEQQVSEFQIRTN 1269
Cdd:TIGR00606  301 EQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQgrLQLQADRHQEHIRARDSLIQSLATRLELD 380
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1270 ESEKVKFELAEKLQKLQAELDGVsgalgstEGKSIKLTKDLSTVQSQLQDTQELLqEETRQKLNFSSRVRQLEEEKNnlm 1349
Cdd:TIGR00606  381 GFERGPFSERQIKNFHTLVIERQ-------EDEAKTAAQLCADLQSKERLKQEQA-DEIRDEKKGLGRTIELKKEIL--- 449
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1350 enleeeeSAKAQLSRQLQALQQQLLESKKRMEDqggmveaMEEAKKKSYKELEFLqqrfdEKHQINDKLEKTRNRLQQEL 1429
Cdd:TIGR00606  450 -------EKKQEELKFVIKELQQLEGSSDRILE-------LDQELRKAERELSKA-----EKNSLTETLKKEVKSLQNEK 510
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1430 DDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYGEERDRAEAEAREketkALSLSRALEEAIDLKDELDRQNKQL 1509
Cdd:TIGR00606  511 ADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDE----LTSLLGYFPNKKQLEDWLHSKSKEI 586
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1510 RAEMDDLVsskdDVGKNVHELERSKRALEQQVQEMKTQIEELEDELQAIeDGKLRLEVNMQAMKAQFERdlQNRDDSNDE 1589
Cdd:TIGR00606  587 NQTRDRLA----KLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDV-CGSQDEESDLERLKEEIEK--SSKQRAMLA 659
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1590 KKKLLFKQVREMEVELEEERKQKSQ-ILAAKKKLEMDLQDMESQMDSANKGRDEAVKQLKKLQLQFKEVWREVEETRAAR 1668
Cdd:TIGR00606  660 GATAVYSQFITQLTDENQSCCPVCQrVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSII 739
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1669 DEIFVQSRDNEKKLKSLEAELLQLQEDLAAAERAKRQAQQErDDLADELSNGVSGKSALLDEKRALEMRISQleeeldee 1748
Cdd:TIGR00606  740 DLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPE-EESAKVCLTDVTIMERFQMELKDVERKIAQ-------- 810
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1749 qsntelindryrkltlqvetittelsaersfsQKAENARQQMERQNKELKVKLNEMDSTMRskykitiasleaKISQLEE 1828
Cdd:TIGR00606  811 --------------------------------QAAKLQGSDLDRTVQQVNQEKQEKQHELD------------TVVSKIE 846
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1829 QMEQESKERIIANKLVRRAEKRLKEVLLQVEEERRNADQFKEQLEKANIRMKQLKRQLEEAEEEASRANSNRRRLQRELE 1908
Cdd:TIGR00606  847 LNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKE 926
                          810
                   ....*....|.
gi 1785379715 1909 DVTESAESMNR 1919
Cdd:TIGR00606  927 ELISSKETSNK 937
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
1485-1719 4.58e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 44.71  E-value: 4.58e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1485 ALSLSRALEEAIDLKDELDRQNKQLRAEMDDLVSSKDDVGKnvhelerSKRALEQQVQEMKTQIEELEDELQAIEDGKLR 1564
Cdd:COG4942     19 ASLLSAAVLAAAFSAAADDKQLKQIQKEIAALEKKIREQQD-------QRAKLEKQLKSLETEIASLEAQLIETADDLKK 91
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1565 LEVNMQAMKAQFERdLQNRDDSNDEKKKLLFKQVREMEVELEEERKQKSQILAAKKKLEMDLQDMesqmdsaNKGRDEAV 1644
Cdd:COG4942     92 LRKQIADLNARLNA-LEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGAL-------NPARAERI 163
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1785379715 1645 KQLKKLQLQFKEVWREVEETRAARDEIFVQSRDNEKKLKSLEAELLQLQEDLAAAERAKRQAQQERDDLADELSN 1719
Cdd:COG4942    164 DALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKN 238
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
884-1260 4.88e-04

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 429718 [Multi-domain]  Cd Length: 488  Bit Score: 44.88  E-value: 4.88e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  884 QLFEEKSILAEQLQAETELFAEAEEMRARLASKKQELEEILHDLEARVEEEEERTLQLQNEKKKMHQHIQDLEEQLEEEE 963
Cdd:pfam07888   35 RLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKVEELEEKYKELSRSGEELA 114
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  964 GARQKLQLEKVTTESRLKKMEEDILLLEDQNAKLAKERKLLDDRIGEFTSTMAEEEEKVKSLNklrnkyeaviADLEDRL 1043
Cdd:pfam07888  115 EEKDALLAQRAESEARIRELEEDIKTLTQRVLERETELERMKERVKKAGAQRKEEEAERKQLQ----------AKLQQTE 184
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1044 KKEEKGRQEMEKMKRKLDGETTDLqdqllelqqqieelkQQLARKEEELQAALARVDDEVGQKNNLLKQLRDLQSQLAEL 1123
Cdd:pfam07888  185 EELRSLSKEFQELRNSLAQRDTQV---------------LQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNAS 249
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1124 HEDLESEKAARAKAEKQRRDLGEELEALKTELEDT----LDSTAAQQELRAKREQEVTDLKKTIEEDVKVRDAQVTEMRQ 1199
Cdd:pfam07888  250 ERKVEGLGEELSSMAAQRDRTQAELHQARLQAAQLtlqlADASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQR 329
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1785379715 1200 RHNQVVEEISE----QLEQARRFKGNLEKVKQT------LESENTDLIKEVKNLQAAKQDSEQRRKKLEQQ 1260
Cdd:pfam07888  330 LEERLQEERMEreklEVELGREKDCNRVQLSESrrelqeLKASLRVAQKEKEQLQAEKQELLEYIRQLEQR 400
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
1104-1886 5.91e-04

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 44.96  E-value: 5.91e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1104 GQKNNLLKQLRDLQSQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRAKREQEVTDLKKTI 1183
Cdd:TIGR00618  152 GEFAQFLKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHL 231
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1184 EEDVKvrdaqvtEMRQRHNQVVEEISEQLEQARRFKgnLEKVKQTLESENTDLIKEVKNLQAAKQDSEQRRKKLEQQVSE 1263
Cdd:TIGR00618  232 REALQ-------QTQQSHAYLTQKREAQEEQLKKQQ--LLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAV 302
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1264 FQIRtNESEKVKFELAEKLQKLQAELDGVSGALgSTEGKSIKLTKDLSTVQSQ------LQDTQELLQEETRQKLNFSSR 1337
Cdd:TIGR00618  303 TQIE-QQAQRIHTELQSKMRSRAKLLMKRAAHV-KQQSSIEEQRRLLQTLHSQeihirdAHEVATSIREISCQQHTLTQH 380
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1338 VRQLEEEKNNLMENLEeeeSAKAQLSRQLQALQQQLLESKKRMEDQGGMVEAmEEAKKKSYKELEFLQQRFDEKHQIndk 1417
Cdd:TIGR00618  381 IHTLQQQKTTLTQKLQ---SLCKELDILQREQATIDTRTSAFRDLQGQLAHA-KKQQELQQRYAELCAAAITCTAQC--- 453
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1418 lEKTRNRLQQELddlmvdldhqrqivsnlEKKQKKFDQMLAEEKNISARygeerdraeaearEKETKALSLSRALEEAiD 1497
Cdd:TIGR00618  454 -EKLEKIHLQES-----------------AQSLKEREQQLQTKEQIHLQ-------------ETRKKAVVLARLLELQ-E 501
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1498 LKDELDRQNKQLRAEMDDLvsskDDVGKNVHELERskraLEQQVQEMKTQIEELEDELQAIEDGKLRLEVNMQAMKAQFE 1577
Cdd:TIGR00618  502 EPCPLCGSCIHPNPARQDI----DNPGPLTRRMQR----GEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFS 573
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1578 RDLQNRDDSNDEKKKLLfKQVREMEVELEEERKQKSQILAAKKKLEMDLQDmesqmdSANKGRDEAVKQLKKLQLQFKEV 1657
Cdd:TIGR00618  574 ILTQCDNRSKEDIPNLQ-NITVRLQDLTEKLSEAEDMLACEQHALLRKLQP------EQDLQDVRLHLQQCSQELALKLT 646
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1658 WREVEETRAARDEIfvqsRDNEKKLKSLEAELLQL-QEDLAAAERAKRQAQQERDDLADELSNGVSGKSALLDEKRALEM 1736
Cdd:TIGR00618  647 ALHALQLTLTQERV----REHALSIRVLPKELLASrQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNE 722
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1737 RISQLEEELDEEQSNTELINDRYRKLTLQVETITTELSAERSFSQKAENARQQMERQNKELKVKLNEMDSTMrskykiti 1816
Cdd:TIGR00618  723 IENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLR-------- 794
                          730       740       750       760       770       780       790
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1817 ASLEAKISQLEEQMEQESKERiianklvrraekrLKEVLLQVEEERRNADQFKEQLEKANIRMKQLKRQL 1886
Cdd:TIGR00618  795 EEDTHLLKTLEAEIGQEIPSD-------------EDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQL 851
PRK12704 PRK12704
phosphodiesterase; Provisional
1773-1884 6.10e-04

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 44.77  E-value: 6.10e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1773 LSAERSFSQKAENARQQMERQNKELKVKLNEMDSTMRSKYKITIASLEAKISQLEEQMEQesKERIIANKL--VRRAEKR 1850
Cdd:PRK12704    34 KEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQ--KEENLDRKLelLEKREEE 111
                           90       100       110
                   ....*....|....*....|....*....|....
gi 1785379715 1851 LKEVLLQVEEERRNADQFKEQLEKanIRMKQLKR 1884
Cdd:PRK12704   112 LEKKEKELEQKQQELEKKEEELEE--LIEEQLQE 143
PRK12704 PRK12704
phosphodiesterase; Provisional
1820-1938 6.58e-04

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 44.38  E-value: 6.58e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1820 EAKISQLEEQMEQESKEriiANKlvrRAEKRLKEVLLQVEEERRNA-DQFKEQLEKANIRMKQLKRQLEEAEEEASRANS 1898
Cdd:PRK12704    30 EAKIKEAEEEAKRILEE---AKK---EAEAIKKEALLEAKEEIHKLrNEFEKELRERRNELQKLEKRLLQKEENLDRKLE 103
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1785379715 1899 NRRRLQRELEDVTESAESMNREVTTLRSRLSKLERQQRKR 1938
Cdd:PRK12704   104 LLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
1475-1837 6.94e-04

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 429718 [Multi-domain]  Cd Length: 488  Bit Score: 44.49  E-value: 6.94e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1475 EAEAREKETKALSLSRALEEAIDLKDELDRQNKQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQVQEMKTQIEELEDE 1554
Cdd:pfam07888   58 EKEKERYKRDREQWERQRRELESRVAELKEELRQSREKVEELEEKYKELSRSGEELAEEKDALLAQRAESEARIRELEED 137
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1555 LQAIEDGKLRLEVNMQAMKAQFERDLQNRDDSNDEKKKLLFKQVremeveleeerkqksQILAAKKKLEMDLQDMESQMD 1634
Cdd:pfam07888  138 IKTLTQRVLERETELERMKERVKKAGAQRKEEEAERKQLQAKLQ---------------QTEEELRSLSKEFQELRNSLA 202
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1635 SankgRDEAVKQLK----KLQLQFKEVWREVEETRAARDEIfvqsRDNEKKLKSLEAELLQLQEDLA--AAERAKRQAQQ 1708
Cdd:pfam07888  203 Q----RDTQVLQLQdtitTLTQKLTTAHRKEAENEALLEEL----RSLQERLNASERKVEGLGEELSsmAAQRDRTQAEL 274
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1709 ERDDL-ADELSNGVSGKSALLDEKRAlemrisQLEEELDEEQSNTELINDRYRKLTLQVETITTELSAERSFSQKAE--- 1784
Cdd:pfam07888  275 HQARLqAAQLTLQLADASLALREGRA------RWAQERETLQQSAEADKDRIEKLSAELQRLEERLQEERMEREKLEvel 348
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1785 -NARQQMERQNKELKVKLNEMDSTMRSKYKITIASLEAK------ISQLEEQMEQESKER 1837
Cdd:pfam07888  349 gREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKqelleyIRQLEQRLETVADAK 408
YhaN COG4717
Uncharacterized protein YhaN, contains AAA domain [Function unknown];
860-1561 8.07e-04

Uncharacterized protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 227061 [Multi-domain]  Cd Length: 984  Bit Score: 44.45  E-value: 8.07e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  860 ELQKVKDTQVKTESELKEMAnKYQQLFEEKsilaeqlqaetelfaeaEEMRARLASKKQELEEILHDLEArvEEEEERTL 939
Cdd:COG4717    186 LLEKLKQERNEIDEAEKEYA-TYHKLLESR-----------------RAEHARLAELRSELRADRDHIRA--LRDAVELW 245
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  940 QLQNEKKKMHQHIqDLEEQLEEEEGARQKLQLEKVttESRLKKMEEDILLLEDQNAKLAKERKLLddrigeftstmAEEE 1019
Cdd:COG4717    246 PRLQEWKQLEQEL-TRRREELATFPRDGVLRLEKR--EAHLQKTEAEIDALLVRLAELKDLASQL-----------IPAK 311
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1020 EKVKSLNKLRNKYEAVIADLEDRLKKEEKGRQEMEKMKRKLDGETTDLQDQLLELQQQIEELKQQLARKEEELQAALARV 1099
Cdd:COG4717    312 EAVLQALVRLHQQLSEIKASAFELTETLAGIEADLRDKEEAAGNGFEAERVHDLRSLECMLRYQSSQRELKQTEAAYCKR 391
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1100 DDEVGQKNNLLKQLRDLQSQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRAKREQEVTDL 1179
Cdd:COG4717    392 LDEKRLFEDEAEEEARQRLADDEEEVRAGDEAREEKIAANSQVIDKEEVCNLYDRRDTAWQKQRFLREKQTAFERQKTEH 471
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1180 KKTIeedvKVRDAQVTemrqrhnQVVEEISEQLEQARRFKGnlEKVKQTLESENTDLIKEVKNLQAAKQDSEQrrKKLEQ 1259
Cdd:COG4717    472 TKII----ALRLAGML-------LVALSRLLTSLIFQIIFA--VAQIVFLSAEIKSSSRAVREEKAAVTDIPE--ELARL 536
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1260 QVSEFQIRTNESEKVKFELAEKLQKLQAELDGVSGALGSTEGKsikltkdlstvQSQLQDTQELLQEETRQKLNFSSRVR 1339
Cdd:COG4717    537 LITDELPELAVDLLVQSRIRQHWQQLRKALDQLEAAYEALEGR-----------FAAAEAAMAEWQSEWEEALDELGLSR 605
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1340 QLEEEKNNLMENLEEEESAKAQLSRQLQALQQQLLESKKRMEDQGGMVEAMEEAKkksYKELEFLQQRFDEKHQINDKLE 1419
Cdd:COG4717    606 ELSPEQQLDILSTMKDLKKLMQKKAELTHQVARLREEQAAFEERVEGLLAVLEAQ---FIDLSTLFCVQRLRVAAELQKE 682
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1420 KTRNRLQQELDDLMVDLDHQRQivsNLEKKQKKFDQMLAEEKNISARYGEERDRAEAEAREKETKALSLSRALEEAIDLK 1499
Cdd:COG4717    683 EARLALEGNIERTKELNDELRA---ELELHRKEILDLFDCGTADTEDAFREAAREEQQLTQRESRLESLEAQLEGVAAEA 759
                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1785379715 1500 DELDRQNKQlraemddlvssKDDVGKNVHELERSKRALEQQVQEMKTQIEELEDELQAIEDG 1561
Cdd:COG4717    760 YELSASLDQ-----------RELKEEELALLEEAIDALDEEVEELHAQVAALSRQIAQLEGG 810
ADIP pfam11559
Afadin- and alpha -actinin-Binding; This family is found in mammals where it is localized at ...
1487-1584 8.37e-04

Afadin- and alpha -actinin-Binding; This family is found in mammals where it is localized at cell-cell adherens junctions, and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins localized at Cell-Cell Adherens Junctions.


Pssm-ID: 431934 [Multi-domain]  Cd Length: 151  Bit Score: 41.92  E-value: 8.37e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1487 SLSRALEEAIDLKDELDRQNKQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQVQEMKTQIEELEDELQAIEDGKLRLE 1566
Cdd:pfam11559   42 ELLQQRDRDLEFRESLNETIRTLEAEIERLQSKIERLKTQLEDLERELALLQAKERQLEKKLKTLEQKLKNEKEELQRLK 121
                           90
                   ....*....|....*...
gi 1785379715 1567 VNMQAMKAQFERDLQNRD 1584
Cdd:pfam11559  122 NALQQIKTQFAHEVKKRD 139
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
981-1284 8.90e-04

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 44.25  E-value: 8.90e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  981 KKMEEDILLLEDQNAKLAKERKLLDDRIGEFTSTMAEEEEKVKSLNKLRNKYEAVIADLEDRLKKEEKGRQEMEKMKRKL 1060
Cdd:COG4372     67 RNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQA 146
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1061 DgETTDLQDQLLELQQQIEELKQQLARKEEELQAALARVDDEVgqknnllkqlRDLqsqlaelhedleseKAARAKAEKQ 1140
Cdd:COG4372    147 Q-DLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQV----------LDL--------------KLRSAQIEQE 201
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1141 RRDLGEELEALKTELEDTLDSTAAQQELRAKREQevtdlkktieedvkvRDAQVTEMRQRHNQVVEEISEQLEQARRfkg 1220
Cdd:COG4372    202 AQNLATRANAAQARTEELARRAAAAQQTAQAIQQ---------------RDAQISQKAQQIAARAEQIRERERQLQR--- 263
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1785379715 1221 nlekvkqtLESENTDLIKEVKNLQAAKQDS-EQRRKKLEQQVSEFQ----IRTNESEKVKFELAEKLQK 1284
Cdd:COG4372    264 --------LETAQARLEQEVAQLEAYYQAYvRLRQQAAATQRGQVLagaaQRVAQAQAQAQAQAQLLSS 324
MscK COG3264
Small-conductance mechanosensitive channel [Cell wall/membrane/envelope biogenesis];
1092-1297 1.11e-03

Small-conductance mechanosensitive channel [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 225803 [Multi-domain]  Cd Length: 835  Bit Score: 43.91  E-value: 1.11e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1092 LQAALA-RVDDEVGQKNNLLKQLRDLQSQLAELHEdLESEKAArAKAEKQRRDLGEELEALKtELEDTLD------STAA 1164
Cdd:COG3264      9 LQELLQsRRELLTAESAQLEAALQLLQEAVNSKRQ-EEAEPAA-EEAELQAELIQQELAIND-QLSQALNqqterlNALA 85
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1165 QQELRAK--REQeVTDLKKTIEEDVKVRDAQVTEMRQRhNQVVEEISEQLEQARRFKGNLEKVK-QTLESENTDLIKEVK 1241
Cdd:COG3264     86 SDDRQLAnlLLQ-LLQSSRTIREQIAVLRGSLLLSRIL-LQQLGPLPEAGQPQEQFEVTQERDAlQAEKAYINALEGQAE 163
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1785379715 1242 NL-QAAKQDSEQ----RRKKLEQQVSEfqiRTNESEKVKFELAEK-LQKLQAELDGVSGALG 1297
Cdd:COG3264    164 QLtAEVRDILDQildtRRELLNSLLSQ---REAISLQLNQQQLSAaSDELRSLLHQQSFWVS 222
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
1124-1482 1.21e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 43.96  E-value: 1.21e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1124 HEDLESEKAARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRAKREQEvtdLKKTIEEDVKVRDAQVTEmrqrhnq 1203
Cdd:pfam17380  298 QERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERE---LERIRQEERKRELERIRQ------- 367
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1204 vvEEISEQLEQARRfkgnLEKVKQTLESENTDLIKEVKNLQAAKQDSEQRRKKLEQQVSEFqirtnesEKVKFElaeklq 1283
Cdd:pfam17380  368 --EEIAMEISRMRE----LERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEM-------EQIRAE------ 428
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1284 klqaeldgvsgalgstegksikltkdlstvqsqlqdtqellQEETRQKlnfssRVRQLEEEKNNLMENLEEEESAKAQLS 1363
Cdd:pfam17380  429 -----------------------------------------QEEARQR-----EVRRLEEERAREMERVRLEEQERQQQV 462
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1364 RQLQALQQQLLESKKRMEDQGGMVEAMEEAKKKsykeleFLQQRFDEKHQINDKLEKTRNRLQQELDDLMVDL--DHQRQ 1441
Cdd:pfam17380  463 ERLRQQEEERKRKKLELEKEKRDRKRAEEQRRK------ILEKELEERKQAMIEEERKRKLLEKEMEERQKAIyeEERRR 536
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|.
gi 1785379715 1442 IVSNLEKKQKKFDQMLAEEKNISaRYGEERDRAEAEAREKE 1482
Cdd:pfam17380  537 EAEEERRKQQEMEERRRIQEQMR-KATEERSRLEAMERERE 576
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
1530-1939 1.44e-03

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 426331 [Multi-domain]  Cd Length: 1081  Bit Score: 43.61  E-value: 1.44e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1530 LERSKRALEQQVQEMKTQIEELEDELQAIEDGKLRLEVNMQAMKAQFERDLQNRDDSNDEKKKLLFKqVREMEVELEEER 1609
Cdd:pfam01576   66 LAARKQELEEILHELEARLEEEEERSQQLQNEKKKMQQHIQDLEEQLEEEEAARQKLQLEKVTTEAK-IKKMEEDILLLE 144
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1610 KQKSQILAAKKKLEMDLQDMESQMDSankgRDEAVKQLKKLQLQFKEVWREVEEtRAARDEIFVQsrDNEKKLKSLEAEL 1689
Cdd:pfam01576  145 DQNNKLQKERKLLEERISEFTSNLAE----EEEKSKSLNKLKNKHEAMISDLED-RLKKEEKGRQ--ELEKAKRKLEGES 217
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1690 LQLQEDLAaaeraKRQAQqerddlADELSNGVSGKSallDEKRALEMRISQLEEELDEEQSNTelindryRKLTLQVETI 1769
Cdd:pfam01576  218 SDLQEQIA-----ELQAQ------IAELRAQLAKKE---EELQAALARLEEETAQKNAALKKL-------RELEAQLSEL 276
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1770 TTELSAERSFSQKAENARQQMERQNKELKVKLNE-MDST-----MRSKYkitiaslEAKISQLEEQMEQESKERiiaNKL 1843
Cdd:pfam01576  277 QEDLESERAARAKAEKQRRDLGEELEALKTELEDtLDTTaaqqeLRSKR-------EQEVTELKKALEEETRSH---EAQ 346
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1844 VRRAEKRLKEVLLQVEEERRNADQFKEQLEKANIRMKQLKRQLEEAEEEASRANSNRRRLQRELEdvtesaesmnREVTT 1923
Cdd:pfam01576  347 LQEMRQKHTQALEELTEQLEQAKRNKASLEKAKQALESENAELQAELRSLQQAKQDSEHKRKKLE----------GQLQE 416
                          410
                   ....*....|....*.
gi 1785379715 1924 LRSRLSKLERQQRKRA 1939
Cdd:pfam01576  417 LQSRLSESERQRAELA 432
PRK12704 PRK12704
phosphodiesterase; Provisional
1082-1257 1.70e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 43.23  E-value: 1.70e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1082 KQQLARKEEELQAALARVDDEVGQKNNLLKQLRDLQSQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTELEDTLDS 1161
Cdd:PRK12704    32 KIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEE 111
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1162 TAAQQELRAKREQEVTDLKKTIEedvkvrdaqvtEMRQRHNQVVEEISE-QLEQARRFKgnLEKVKQTLESENTDLIKEV 1240
Cdd:PRK12704   112 LEKKEKELEQKQQELEKKEEELE-----------ELIEEQLQELERISGlTAEEAKEIL--LEKVEEEARHEAAVLIKEI 178
                          170
                   ....*....|....*..
gi 1785379715 1241 KNLqaAKQDSEQRRKKL 1257
Cdd:PRK12704   179 EEE--AKEEADKKAKEI 193
GumC COG3206
Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell wall/membrane ...
971-1265 1.73e-03

Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 225747 [Multi-domain]  Cd Length: 458  Bit Score: 43.20  E-value: 1.73e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  971 LEKVTTESRLKKM-EEDILLLEDQNAKLAKERKLLDDRIGEFTSTMAEEEEKVKSLNKLRNKYEAVIADLEDRLKKE--- 1046
Cdd:COG3206     95 LEKVIDKLKLDDDpEFVGKPLIASFLRLLKDLIGPDPTIFEISYRLDDLLESLKVLRAGRSRVIELSYTSNDPKLAAkla 174
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1047 EKGRQEMEKMKRKLDGETTDLQDQLLELQQQIEELKQQLARKEEELQAALARVDDEVGQKNNLLKQLRDLQSQLAelhed 1126
Cdd:COG3206    175 NALAQAYLADQLEAQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQHGLTDAARGQLLSEQQLSALNTQLQ----- 249
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1127 leSEKAARAKAEKQRRDLGEELEAlkTELEDTLDSTAAQQELRAKREQEVTdlKKTIEEDVKvrdaqvTEMRQRHNQVVe 1206
Cdd:COG3206    250 --SARARLAQAEARLASLLQLLPL--GREAAALREVLESPTIQDLRQQYAQ--VRQQIADLS------TELGAKHPQLV- 316
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1785379715 1207 EISEQLEQARRF-KGNLEKVKQTLESENTDLIKEVKNLQAAKQDSEQRRKKL---EQQVSEFQ 1265
Cdd:COG3206    317 ALEAQLAELRQQiAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLpklQVQLRELE 379
Gp58 pfam07902
gp58-like protein; Sequences found in this family are derived from a number of bacteriophage ...
1104-1341 1.76e-03

gp58-like protein; Sequences found in this family are derived from a number of bacteriophage and prophage proteins. They are similar to gp58, a minor structural protein of Lactococcus delbrueckii bacteriophage LL-H.


Pssm-ID: 369586 [Multi-domain]  Cd Length: 594  Bit Score: 43.02  E-value: 1.76e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1104 GQKNNLLKQLRDLQSQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTELEDTLDSTAAQqelrakreqevtdLKKTI 1183
Cdd:pfam07902   71 GESTGLFKSLEEMLSQLKELNLELTDTKNSNLWSKIKLNNNGMLREYHNDTIKTEIVESAEG-------------IATRI 137
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1184 EEDVKVRDAQVTEMRQRHNQVVEEISEQLeqARRFKGNLEKVKQTLESENTDLIKEVKNLQ---AAKQDSEQRR------ 1254
Cdd:pfam07902  138 SEDTDKKLALINETISGIRREYQDADRQL--SSSYQAGIEGLKATMASDKIGLQAEIQASAqglSQRYDNEIRKlsakit 215
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1255 -----------KKLEQQVSEFqirTNESEKVKFELAEKLQKL----QAELDGVSGALGSTEGKSIKLTKDLSTVQSQLQD 1319
Cdd:pfam07902  216 ttssgtteayeSKLDDLRAEF---TRSNQGMRTELESKISGLqstqQSTAYQISQEISNREGAVSRVQQDLDSYQRRLQD 292
                          250       260       270
                   ....*....|....*....|....*....|...
gi 1785379715 1320 TQEL----------LQEETR-QKLNFSSRVRQL 1341
Cdd:pfam07902  293 AEKNyssltqtvkgLQSTVSdPNSKLESRITQL 325
PRK05431 PRK05431
seryl-tRNA synthetase; Provisional
1490-1560 2.05e-03

seryl-tRNA synthetase; Provisional


Pssm-ID: 235461 [Multi-domain]  Cd Length: 425  Bit Score: 42.75  E-value: 2.05e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1785379715 1490 RALEEAIDLKDELDRQNKQLRAEMDDLVSSKDDVGKNVHELERSK---RALEQQVQEMKTQIEELEDELQAIED 1560
Cdd:PRK05431    21 RGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGedaEALIAEVKELKEEIKALEAELDELEA 94
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
1112-1321 2.08e-03

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 429718 [Multi-domain]  Cd Length: 488  Bit Score: 42.95  E-value: 2.08e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1112 QLRDLQSQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTELedtlDSTAAQQELRAKREQEVTDLKKTIEEDVKVRD 1191
Cdd:pfam07888   74 QRRELESRVAELKEELRQSREKVEELEEKYKELSRSGEELAEEK----DALLAQRAESEARIRELEEDIKTLTQRVLERE 149
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1192 AQVTEMRQRHNQVVEEISEQLEQARRFKGNLEKVKQTLESENTDLikevknlQAAKQDSEQRRKKLEQQVSEFQIRTNES 1271
Cdd:pfam07888  150 TELERMKERVKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEF-------QELRNSLAQRDTQVLQLQDTITTLTQKL 222
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1272 EKVKFELAEkLQKLQAELDGVSGALGSTEGKSIKLTKDLSTVQSQLQDTQ 1321
Cdd:pfam07888  223 TTAHRKEAE-NEALLEELRSLQERLNASERKVEGLGEELSSMAAQRDRTQ 271
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
1388-1937 2.10e-03

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 43.17  E-value: 2.10e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1388 EAMEEAKKKSYKELEFLQQRFDEKHQINDKLEKTRNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARY 1467
Cdd:pfam05483   88 EKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKETCARS 167
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1468 GEERDRAEAEAREKETKALSLSRALEEAIDLKDELDRQNKQLRAEMDdlVSSKDDVGKNVHELERSKRAL---EQQVQEM 1544
Cdd:pfam05483  168 AEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMH--FKLKEDHEKIQHLEEEYKKEIndkEKQVSLL 245
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1545 KTQIEELEDELQaieDGKLRLEVNMQAMKaqferDLQNRDDSNDEKKKLLFKQVREMEVELEEERKQKSQILAAKKKLEM 1624
Cdd:pfam05483  246 LIQITEKENKMK---DLTFLLEESRDKAN-----QLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEE 317
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1625 DLQ-----------DMESQMDSANKGRDE---------------------AVKQLKKLQLQFKEVWREVEETRAARDEIF 1672
Cdd:pfam05483  318 DLQiatkticqlteEKEAQMEELNKAKAAhsfvvtefeattcsleellrtEQQRLEKNEDQLKIITMELQKKSSELEEMT 397
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1673 VQSRDNEKKLKSLEAELLQLQ---------EDLAAAERAKRQA--------QQERDDLADELSNGVSGKSALLDEKRALE 1735
Cdd:pfam05483  398 KFKNNKEVELEELKKILAEDEklldekkqfEKIAEELKGKEQElifllqarEKEIHDLEIQLTAIKTSEEHYLKEVEDLK 477
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1736 MRISQLEEELDEEQSNTELINDRYRKLTLQVETITTELSAERsfsQKAENARQQMERQNK------ELKVKLNEMDSTMR 1809
Cdd:pfam05483  478 TELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQ---EDIINCKKQEERMLKqienleEKEMNLRDELESVR 554
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1810 SKYKITIASLEAKISQLEEQMEQESKERIIANKLVRRAEKRLKEVLLQVEEERRNADQFKE--------------QLEKA 1875
Cdd:pfam05483  555 EEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQenkalkkkgsaenkQLNAY 634
                          570       580       590       600       610       620
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1785379715 1876 NIRMKQLKRQLEEAEEEASRANSNrrrLQRELEDVTESAESMNREVTTLRSRLSKLERQQRK 1937
Cdd:pfam05483  635 EIKVNKLELELASAKQKFEEIIDN---YQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKE 693
PRK12704 PRK12704
phosphodiesterase; Provisional
1131-1344 2.16e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 42.84  E-value: 2.16e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1131 KAARAKAEKQRRDLGEELEALKTEledtldstaaqQELRAKreQEVTDLKKTIEEDVKVRDaqvtemrqrhnqvvEEISE 1210
Cdd:PRK12704    34 KEAEEEAKRILEEAKKEAEAIKKE-----------ALLEAK--EEIHKLRNEFEKELRERR--------------NELQK 86
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1211 QLEQARRFKGNLEKVKQTLESENTDLIKEVKNLQAAKQDSEQRRKKLEqqvsefqirtnesekvkfelaEKLQKLQAELD 1290
Cdd:PRK12704    87 LEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELE---------------------ELIEEQLQELE 145
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1785379715 1291 GVSGaLGSTEGKSIKLTKdlstvqsqlqdtqelLQEETRQKLnfSSRVRQLEEE 1344
Cdd:PRK12704   146 RISG-LTAEEAKEILLEK---------------VEEEARHEA--AVLIKEIEEE 181
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
1428-1651 2.68e-03

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 42.32  E-value: 2.68e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1428 ELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYGEERDRAEAEAREketkalsLSRALEEAIDLKDELDRQNK 1507
Cdd:COG4372     75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAA-------ARQNLAKAQQELARLTKQAQ 147
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1508 QLRAEMDDLVSSKDDVGKNVHELERSKRALEQQVQEMKTQIEELEDELQAIEDGKLRLEVNMQAMKAQfERDLQNRDDSn 1587
Cdd:COG4372    148 DLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQAR-TEELARRAAA- 225
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1785379715 1588 dekkkllFKQVREMEVELEEERKQKSQILAAKkklEMDLQDMESQMDSANKGRDEAVKQLKKLQ 1651
Cdd:COG4372    226 -------AQQTAQAIQQRDAQISQKAQQIAAR---AEQIRERERQLQRLETAQARLEQEVAQLE 279
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 ...
1211-1912 3.12e-03

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 substr. MG1655 [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225638 [Multi-domain]  Cd Length: 1480  Bit Score: 42.57  E-value: 3.12e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1211 QLEQARRFKGNLEKVKQTLESEN---TDLIKEVKNLQAAKQDSEQRRKKLEQQVSEFQIRTNESEKVKF------ELAEK 1281
Cdd:COG3096    284 HLDQALEFRRELYTSRQQLAAEQyrhVDMSRELAELNGAEGDLEADYQAASDHLNLVQTALRQQEKIERyqadleELTIR 363
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1282 LQKLQAELDGVSGALGSTEGKSIKLTKDLSTVQSQLQDTQELLQEETRQKLNFSSRVRQLEEEKNNLMENLEEEESAKAQ 1361
Cdd:COG3096    364 LEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYQQAIAALERAKELCHLPDLTADSAEEW 443
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1362 LSRQLQALQQQLlESKKRMEDQGGMVEAMeeakkksykeleflQQRFDEKHQINDKL--EKTRNRLQQELDDLM---VDL 1436
Cdd:COG3096    444 LETFQAKEEEAT-EKLLSLEQKMSMAQAA--------------HSQFEQAYQLVVAIagELARSEAWDVARELLregPDQ 508
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1437 DHQRQIVSNLEKKQKKFDQMLAEEK---------NISARYGEERDRAEAEAREKETKALSLSRALEEAIDLKDELDRQNK 1507
Cdd:COG3096    509 RHLAEQVQPLRMRLSELEQRLRQQQsaerlladfCKRQGKNLDAEELEALHQELEALIESLSDSVSNAREQRMALRQEQE 588
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1508 QLRAEMDDLVS------SKDDVGKNVHELERSKRALEQQVQEMKTQIEELEDELQAIEDgklRLEVNMQAMKAQFERdLQ 1581
Cdd:COG3096    589 QLQSRIQSLMQrapvwlAAQNALEQLSEQSGEEFTDSQDVTEYMQQLLEREREATVERD---ELGARKNALDEEIER-LS 664
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1582 NRDDSNDEKKKLLFK-----------------------------QVREMEVELEEERKQKSQILAAKKKL---EMDLQDM 1629
Cdd:COG3096    665 QPGGSEDQRLNALAErfggvllseiyddvtiedapyfsalygpsRHAIVVPDLSQVKEHLEGLTDCPEDLyliEGDPQSF 744
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1630 ESQMDSANKGRDEAVKQLKKLQLQ---------FKEVWRE--VEETRAARDEI---FVQSRDNEKKLKSLEAELLQ-LQE 1694
Cdd:COG3096    745 DDSVFSVDELEKAVVVKIADRQWRysrfpeiplFGRAAREqrLESLHAERDVLserHATLSFDVQKTQRLHQAFSRfIGS 824
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1695 DLAAA-----ERAKRQAQQERDDLADELSNGVSGK------------------------SALLDEkrALEMRISQLEEEL 1745
Cdd:COG3096    825 HLAVAfeadpEAEIRQLNSRRNELERALSNHENDNqqqriqfdqakegvtalnrlipqlNLLADE--SLADRVEEIRERL 902
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1746 DEEQSNTELINDRYRKLTlQVETITTELSAERSFSQKAENARQQMERQNKELKVKLNEMDSTMRSKYKITI---ASLEAK 1822
Cdd:COG3096    903 DEAQEAARFIQQHGNTLS-KLEPIASVLQSDPEQFEQLKEDYAQAQQMQRQARQQAFALTEVVQRRAHFSYsdsAEMLSE 981
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1823 ISQLEEQM----EQESKERIIANKLVRRAEKRLKE---VLLQV------------------------------EEERRNA 1865
Cdd:COG3096    982 NSDLNEKLrqrlEQAEAERTRAREQLRQHQAQLSQynqVLASLkssydtkkellnelqqelqdigvradsgaeERARIRR 1061
                          810       820       830       840
                   ....*....|....*....|....*....|....*....|....*..
gi 1785379715 1866 DQFKEQLEKANIRMKQLKRQLEEAEEEASRANSNRRRLQRELEDVTE 1912
Cdd:COG3096   1062 DELHAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMRE 1108
HEC1 COG5185
Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, ...
1120-1432 3.15e-03

Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227512 [Multi-domain]  Cd Length: 622  Bit Score: 42.28  E-value: 3.15e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1120 LAELHEDLESEKAARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRAKReQEVTDLKKTIEEDVKVRDAQVTEMRQ 1199
Cdd:COG5185    245 LKLEDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKI-KTLREKWRALKSDSNKYENYVNAMKQ 323
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1200 RH-------NQVVEEISEQLEQARRFKGNLEKVKQTLESE----------NTDLIKEVKNLQAAKQDSEQRRKKLEQQVS 1262
Cdd:COG5185    324 KSqewpgklEKLKSEIELKEEEIKALQSNIDELHKQLRKQgisteqfelmNQEREKLTRELDKINIQSDKLTKSVKSRKL 403
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1263 EFQIRTNESEKVKFE-------------------------------------LAEKLQKLQAELDGVSGALGSTE-GKSI 1304
Cdd:COG5185    404 EAQGIFKSLEKTLRQydsliqnitrsrsqighnvndsslkinieqlfpkgsgINESIKKSILELNDEIQERIKTEeNKSI 483
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1305 KLTKDLSTVQSqlqDTQELLQEETRQKLNFSSRVRQLEEEKNNLMENLEeeeSAKAQLSRQLQALQQQLLESKKRMEDQG 1384
Cdd:COG5185    484 TLEEDIKNLKH---DINELTQILEKLELELSEANSKFELSKEENERELV---AQRIEIEKLEKELNDLNLLSKTSILDAE 557
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1385 GMVEAME-----------EAKKKSYKEL-EFLQQRFDEKHQINDKLEKTRNRLQQELDDL 1432
Cdd:COG5185    558 QLVQSTEikldelkvdlnRKRYKIHKQViHVIDITSKFKINIQSSLEDLENELGKVIEEL 617
MAD pfam05557
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ...
928-1326 3.46e-03

Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.


Pssm-ID: 428520 [Multi-domain]  Cd Length: 660  Bit Score: 42.41  E-value: 3.46e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  928 EARVEEEEERTLQLQNEKKKMhqhiqdleeqleEEEGARQKLQLEKVTTESRLKKMEEdilllEDQNAKLAKERKLLDDR 1007
Cdd:pfam05557    1 RAELIESKARLSQLQNEKKQM------------ELEHKRARIELERKASALARQLERE-----SDRNQELQKRIRLLEKR 63
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1008 IGEFTSTMAEEEEkvksLNKLRNKYEAVIADLEdrlKKEEKGRQEMEKMKRKLDGETtdlqdqlLELQQQIEELKQQLAR 1087
Cdd:pfam05557   64 EAEAEEALREQAE----LNRLKKKNLEALNKKL---NEKESQLADAREVISCLKNEL-------SELRRQIQRQELELSS 129
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1088 KEEELQAALARVDDEVGQKNNLLKQLRDLQSQLAELHEDLESEKAARAKAEKQRRDlGEELEALKTELEDTLDSTAAQQE 1167
Cdd:pfam05557  130 TNSELEELQERLDLQKAKAQEAEQLRQNLEAQQSSLAEAEQRIKELEFEIQSQEQD-SEIVKNSKSELARIPELERELER 208
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1168 LRAKREQ-------------EVTDLKKTIEEDVKVRDAQVT-EMRQRHNQVVEEISEQLEQ-----------ARRFKGNL 1222
Cdd:pfam05557  209 LREHNKHlnenienklllkeEVEDLKRKLEREEGYREELATlELEKEKLEQELKSWEKLAQdtglnlrspedLSRRIEQL 288
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1223 EKVKQTLESENTDLIKEVKNLQAAKQDSEQRRKKLEQQVSEFQIRTNESEKVKFELAEKLQKLQAELDGVSGALGS---- 1298
Cdd:pfam05557  289 QQREITLKEENSSLTSSARQLEKAQRELEQELAQYLKNIEDLNKKLKRHKALVRRLQRRVLLLTKERDGMRAILESydke 368
                          410       420       430
                   ....*....|....*....|....*....|
gi 1785379715 1299 --TEGKSIKLTKDLSTVQSQLQDTQELLQE 1326
Cdd:pfam05557  369 ltPSNYSPQLLERIEEAEDMTQDMQAHNEE 398
YhaN COG4717
Uncharacterized protein YhaN, contains AAA domain [Function unknown];
1105-1693 4.16e-03

Uncharacterized protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 227061 [Multi-domain]  Cd Length: 984  Bit Score: 42.14  E-value: 4.16e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1105 QKNNLLKQLRDLQSQLAELhedlESEKAARAKAEKQRRDLGEELEALKTELEDTLDSTAAQQEL--RAKREQEvtdlKKT 1182
Cdd:COG4717    182 QINQLLEKLKQERNEIDEA----EKEYATYHKLLESRRAEHARLAELRSELRADRDHIRALRDAveLWPRLQE----WKQ 253
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1183 IEEdvkvrdaQVTEMRQRHNQVVEEISEQLEQARRFKGNLEKVKQTLESENTDLIKEVKNLQAAKQDSEQRRKKLEQQVs 1262
Cdd:COG4717    254 LEQ-------ELTRRREELATFPRDGVLRLEKREAHLQKTEAEIDALLVRLAELKDLASQLIPAKEAVLQALVRLHQQL- 325
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1263 efqirtNESEKVKFELAEKLQKLQAELDGVSGALGSTEGKSIKLTKDLSTVQSQLQDTQELLQEETRQKLNFSSRVRQLE 1342
Cdd:COG4717    326 ------SEIKASAFELTETLAGIEADLRDKEEAAGNGFEAERVHDLRSLECMLRYQSSQRELKQTEAAYCKRLDEKRLFE 399
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1343 EEKNNLMENLEEEESAKAQLSRQLQALQQQLLESKKRMEDQGGMVEAMEEAKKKSYKELEflQQRFDEKHqindKLEKTR 1422
Cdd:COG4717    400 DEAEEEARQRLADDEEEVRAGDEAREEKIAANSQVIDKEEVCNLYDRRDTAWQKQRFLRE--KQTAFERQ----KTEHTK 473
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1423 NRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYGEERDRAEAEAREKETKALSLSRALEEAIDLK--D 1500
Cdd:COG4717    474 IIALRLAGMLLVALSRLLTSLIFQIIFAVAQIVFLSAEIKSSSRAVREEKAAVTDIPEELARLLITDELPELAVDLLvqS 553
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1501 ELDRQNKQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQVQEMKTQI--------EELEDELQAIEDGKlRLEVNMQAM 1572
Cdd:COG4717    554 RIRQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAEWQSEWEEALDELglsrelspEQQLDILSTMKDLK-KLMQKKAEL 632
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1573 KAQFERDLQNRDDSNDEKKKLLFKQVREMEVELEEERKQKSQILA------AKKKLEMDLQDMESQMDSANKGRDEAVKQ 1646
Cdd:COG4717    633 THQVARLREEQAAFEERVEGLLAVLEAQFIDLSTLFCVQRLRVAAelqkeeARLALEGNIERTKELNDELRAELELHRKE 712
                          570       580       590       600
                   ....*....|....*....|....*....|....*....|....*..
gi 1785379715 1647 LKKLqLQFKEVWREVEETRAARDEifVQSRDNEKKLKSLEAELLQLQ 1693
Cdd:COG4717    713 ILDL-FDCGTADTEDAFREAAREE--QQLTQRESRLESLEAQLEGVA 756
Cast pfam10174
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ...
1402-1925 4.45e-03

RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.


Pssm-ID: 431111 [Multi-domain]  Cd Length: 766  Bit Score: 42.12  E-value: 4.45e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1402 EFLQQRFDEKHQINDKLEKTRNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLaEEKNISARYGEERDR-----AEA 1476
Cdd:pfam10174  112 ELTEENFRRLQSEHERQAKELFLLRKTLEEMELRIETQKQTLGARDESIKKLLEML-QSKGLPKKSGEEDWErtrriAEA 190
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1477 EAREKETKALsLSRALEEAIDLKDELDRQNK--QLRAEMDDLVSSKDDVGKNVHELERSKRALEQQVQE----------- 1543
Cdd:pfam10174  191 EMQLGHLEVL-LDQKEKENIHLREELHRRNQlqPDPAKTKALQTVIEMKDTKISSLERNIRDLEDEVQMlktngllhted 269
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1544 -----------------MKTQIEELEDELQAIE------------------DGKLRLEVNMQAMKAQFERD--LQNRDDS 1586
Cdd:pfam10174  270 reeeikqmevykshskfMKNKIDQLKQELSKKEsellalqtkletltnqnsDCKQHIEVLKESLTAKEQRAaiLQTEVDA 349
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1587 ----NDEKKKLLFKQVremeveleeerKQKSQILAAKKKLEMDLQDMESQMDSANKGRDEAVKQLKKLQLQFKEVWREVE 1662
Cdd:pfam10174  350 lrlrLEEKESFLNKKT-----------KQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLA 418
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1663 ETRAARDEIFVQSRDNEKKLKSLEaELLQLQEDLAAA-----ERAKRQAQQERDDLADELSNGVSGKSALLDEKRALEMR 1737
Cdd:pfam10174  419 GLKERVKSLQTDSSNTDTALTTLE-EALSEKERIIERlkeqrEREDRERLEELESLKKENKDLKEKVSALQPELTEKESS 497
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1738 ISQLEEELDEEQSNTELINDRYRKLTLQVETITTELSAERSFSQKAENARQQmERQNKELKVKLNEMDSTMrSKYKITIA 1817
Cdd:pfam10174  498 LIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNAEEA-VRTNPEINDRIRLLEQEV-ARYKEESG 575
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1818 SLEAKISQL-----EEQMEQESKERIIANkLVRRAEKRLKEV--------LLQVEEERRNADQFKEQL-EKANIRMKQLK 1883
Cdd:pfam10174  576 KAQAEVERLlgilrEVENEKNDKDKKIAE-LESLTLRQMKEQnkkvanikHGQQEMKKKGAQLLEEARrREDNLADNSQQ 654
                          570       580       590       600
                   ....*....|....*....|....*....|....*....|..
gi 1785379715 1884 RQLEEAEEEASRANSNRRRLQRELEDVTESAESMNREVTTLR 1925
Cdd:pfam10174  655 LQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLR 696
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
1537-1937 4.50e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 41.93  E-value: 4.50e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1537 LEQQVQEMKTQIEELEDELQAIEDGKLRLEVNMQAMKAQFERDLQNRDDSNDEKKKllfkqvremeveleeerkQKSQIl 1616
Cdd:TIGR04523   38 LEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKK------------------NKDKI- 98
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1617 aakKKLEMDLQDMESQMDSANKGRDEAVKQLKKLQLQFKEVWR-------EVEETRAARDEIFVQSRDNEKKLKSLEAEL 1689
Cdd:TIGR04523   99 ---NKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKnidkfltEIKKKEKELEKLNNKYNDLKKQKEELENEL 175
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1690 LQLQEDLAAAERAKRQAQQERDDLADELSNGVSgksaLLDEKRALEMRISQLEEELDEEQSNTELINDRYRKLTLQVETI 1769
Cdd:TIGR04523  176 NLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKK----KIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNT 251
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1770 TTELSAERSFSQKA----ENARQQMERQNKELKVKLNEMdstmrSKYKITIASLEAK-----ISQLEEQMEQESKERIIA 1840
Cdd:TIGR04523  252 QTQLNQLKDEQNKIkkqlSEKQKELEQNNKKIKELEKQL-----NQLKSEISDLNNQkeqdwNKELKSELKNQEKKLEEI 326
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1841 NKLVRRAEK---RLKEVLLQVEEERRNAD----QFKEQLEKANIRMKQLKRQLEEAEEEASRANSNRRRLQRELEDVTES 1913
Cdd:TIGR04523  327 QNQISQNNKiisQLNEQISQLKKELTNSEsensEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKL 406
                          410       420
                   ....*....|....*....|....
gi 1785379715 1914 AESMNREVTTLRSRLSKLERQQRK 1937
Cdd:TIGR04523  407 NQQKDEQIKKLQQEKELLEKEIER 430
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
1006-1935 4.95e-03

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 41.96  E-value: 4.95e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1006 DRIGEFTSTMAEEEEKVKSLNKLRNKYEAVIADLEDRLKKEEKGRQEMEKMKRKLDGETtdlqDQLLELQQQIEELKQQL 1085
Cdd:TIGR00606  189 ETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENEL----DPLKNRLKEIEHNLSKI 264
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1086 ARKEEELQAALARVDDEVGQKNNL-LKQLRDLQSQLAELHEDLESEKAARAKAEKQRRDLGEELEALKTELEDtLDSTAA 1164
Cdd:TIGR00606  265 MKLDNEIKALKSRKKQMEKDNSELeLKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRL-LNQEKT 343
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1165 QQELRAKREQEVTDLkktIEEDVKVRDAQVTEMRQRHNqvVEEISEQLEQARRFKGNLEKVKQTLESENTDLIKEVKNLQ 1244
Cdd:TIGR00606  344 ELLVEQGRLQLQADR---HQEHIRARDSLIQSLATRLE--LDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQ 418
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1245 AAKQDSEQRRKKLEQQVSEFQiRTNESEKvkfelaEKLQKLQAELDGVSGALGSTEGKS---IKLTKDLSTVQSQLQDTQ 1321
Cdd:TIGR00606  419 SKERLKQEQADEIRDEKKGLG-RTIELKK------EILEKKQEELKFVIKELQQLEGSSdriLELDQELRKAERELSKAE 491
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1322 ELLQEETRQKlnfssRVRQLEEEKNNLMENLEEEESAKAQLSRQLQALQQQLLESKKRMEDQggmvEAMEEAKKKSYKEL 1401
Cdd:TIGR00606  492 KNSLTETLKK-----EVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKD----EQIRKIKSRHSDEL 562
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1402 EFLQQRFDEKHQINDKLEKTRNRLQQ---ELDDLMVDLDHQRQIVSNLEKKQKKFD-QMLAEEKNISARYGEERDRAEAE 1477
Cdd:TIGR00606  563 TSLLGYFPNKKQLEDWLHSKSKEINQtrdRLAKLNKELASLEQNKNHINNELESKEeQLSSYEDKLFDVCGSQDEESDLE 642
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1478 AREKETKALSLSRALEEAidLKDELDRQNKQLRAEMDDLVSSKDDVGKNVHELERSKRALEQQVQEMKTQIEELEDELQA 1557
Cdd:TIGR00606  643 RLKEEIEKSSKQRAMLAG--ATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKK 720
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1558 IEdgKLRLEVNMQAMKAQFERDLqnrddsndeKKKLLFKQVREMEVELEEERKQKSQILAAKKKLEMDLQDMESQMDSAN 1637
Cdd:TIGR00606  721 KE--KRRDEMLGLAPGRQSIIDL---------KEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLT 789
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1638 KgrdeaVKQLKKLQLQFKEVWREVEETRAArdeifVQSRDNEKKLKSLEAELLQLQEDLAAAERAKRQAQQERDDLADEL 1717
Cdd:TIGR00606  790 D-----VTIMERFQMELKDVERKIAQQAAK-----LQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQI 859
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1718 SNGVSGKSALLDEKRALEMRISQLEEELDEEQSNTELINDRYRKLTLQVETITTELSAERSFSQKAENARQQMERQNKEL 1797
Cdd:TIGR00606  860 QHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKA 939
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1798 KVKLNEMDSTMRSKYkITIASLEAKIsqleeqmeQESKERIIANKlvrraEKRLKEVLLQVEEERRNADQFKEQLEKANI 1877
Cdd:TIGR00606  940 QDKVNDIKEKVKNIH-GYMKDIENKI--------QDGKDDYLKQK-----ETELNTVNAQLEECEKHQEKINEDMRLMRQ 1005
                          890       900       910       920       930
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1785379715 1878 RMKQLKRQleeaeEEASRANSNRRRLQRELEDVTESAESMNREVTTLRSRLSKLERQQ 1935
Cdd:TIGR00606 1006 DIDTQKIQ-----ERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQK 1058
PRK12704 PRK12704
phosphodiesterase; Provisional
1457-1558 5.03e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 41.69  E-value: 5.03e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1457 LAEEKNISARYGEERDRAEAEAREKETKALSLSRALEEAIDLKDELDRQNKQLRAE------------------MDDLVS 1518
Cdd:PRK12704    28 IAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNElqklekrllqkeenldrkLELLEK 107
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1785379715 1519 SKDDVGKNVHELERSKRALEQQVQEMKTQIEELEDELQAI 1558
Cdd:PRK12704   108 REEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERI 147
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
1682-1937 5.18e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 41.63  E-value: 5.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1682 LKSLEAELLQLQEDLAAAERAKRQAQQERDDLADELSNGVSGKSALLDEKRALEMRISQleeeldeeqsntelINDRYRK 1761
Cdd:COG4942     33 AAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKK--------------LRKQIAD 98
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1762 LTLQVETITTELSAERSFSQKAENARQQMERqNKELKVKLNEMDSTMrskykitiaslEAKISQLEEQMEQESKERIIAN 1841
Cdd:COG4942     99 LNARLNALEVQEREQRRRLAEQLAALQRSGR-NPPPALLVSPEDAQR-----------SVRLAIYYGALNPARAERIDAL 166
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1842 KLVRRAEKRLKEVLLQVEEERRNA----DQFKEQLEKANIRMKQLKRQLEEAEEEASRANSNRRRLQRELEDVTESAESM 1917
Cdd:COG4942    167 KATLKQLAAVRAEIAAEQAELTTLlseqRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAA 246
                          250       260
                   ....*....|....*....|
gi 1785379715 1918 NREVTTLRSRLSKLERQQRK 1937
Cdd:COG4942    247 AAKAREAAAAAEAAAARARA 266
PRK05771 PRK05771
V-type ATP synthase subunit I; Validated
1471-1698 5.23e-03

V-type ATP synthase subunit I; Validated


Pssm-ID: 235600 [Multi-domain]  Cd Length: 646  Bit Score: 41.84  E-value: 5.23e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1471 RDRAEAEAREKETKALSLSRALEEAID-LKDELDRQNKQLRAEMDDLVSSKDDVGKnvhELERSKRALEQQVQEMKTQIE 1549
Cdd:PRK05771    34 EDLKEELSNERLRKLRSLLTKLSEALDkLRSYLPKLNPLREEKKKVSVKSLEELIK---DVEEELEKIEKEIKELEEEIS 110
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1550 ELEDELQAIEDGKLRLEVnmqaMKAqFERDLQNRDDS----------NDEKKKLLFKQVREMEVELEEERKQKSQILAAK 1619
Cdd:PRK05771   111 ELENEIKELEQEIERLEP----WGN-FDLDLSLLLGFkyvsvfvgtvPEDKLEELKLESDVENVEYISTDKGYVYVVVVV 185
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1785379715 1620 KKlemdlqdmesqmdsanKGRDEAVKQLKKlqLQFKEVwrEVEETRAARDEIfvqsRDNEKKLKSLEAELLQLQEDLAA 1698
Cdd:PRK05771   186 LK----------------ELSDEVEEELKK--LGFERL--ELEEEGTPSELI----REIKEELEEIEKERESLLEELKE 240
Mitofilin pfam09731
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ...
1083-1251 5.35e-03

Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.


Pssm-ID: 430783 [Multi-domain]  Cd Length: 618  Bit Score: 41.67  E-value: 5.35e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1083 QQLARKEEELQA-ALARVDDEVGQKNNLLKQLRDLQSQLAELH-------EDLESEKAARAKAEKQRRDLGEELEALKTE 1154
Cdd:pfam09731  297 DQLSKKLAELKKrEEKHIERALEKQKEELDKLAEELSARLEEVraadeaqLRLEFEREREEIRESYEEKLRTELERQAEA 376
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1155 LEDTLDSTAAQQELRAKREQEvTDLKKTIEEDVKVRDAQVTEMRQRHN---QVVEEISEQLEQARRFK---GNLEKVKQT 1228
Cdd:pfam09731  377 HEEHLKDVLVEQEIELQREFL-QDIKEKVEEERAGRLLKLNELLANLKgleKATSSHSEVEDENRKAQqlwLAVEALRST 455
                          170       180
                   ....*....|....*....|....*...
gi 1785379715 1229 LESENTD-----LIKEVKNLQAAKQDSE 1251
Cdd:pfam09731  456 LEDGSADsrprpLVRELKALKELASDDE 483
PRK11637 PRK11637
AmiB activator; Provisional
1082-1284 5.83e-03

AmiB activator; Provisional


Pssm-ID: 236942 [Multi-domain]  Cd Length: 428  Bit Score: 41.22  E-value: 5.83e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1082 KQQLARKEEELQ-------AALARVDDEVGQKNNLLKQLRDLQSQLAELHEDLESEKAARAKAEK----QRRDLGEELEA 1150
Cdd:PRK11637    53 QQDIAAKEKSVRqqqqqraSLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQqqaaQERLLAAQLDA 132
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1151 L-----KTELEDTLDSTAAQQE---------LRAKREQEVTDLKKTIEEdvkvRDAQVTEMRQRHNQVVEEISEQLEQAR 1216
Cdd:PRK11637   133 AfrqgeHTGLQLILSGEESQRGerilayfgyLNQARQETIAELKQTREE----LAAQKAELEEKQSQQKTLLYEQQAQQQ 208
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1785379715 1217 RFKGNLEKVKQTLESENTDLIKEVKNLQAAKQDSEQRRKKLEQQVSEFQIRTN----ESEKVKFELAEKLQK 1284
Cdd:PRK11637   209 KLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAEREAKARAErearEAARVRDKQKQAKRK 280
46 PHA02562
endonuclease subunit; Provisional
992-1181 5.84e-03

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 41.54  E-value: 5.84e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715  992 DQNAKLAKERK----LLDDRIGEFTSTMAEEEEkvkSLNKLRNKYEAVIADLEdRLKKEEKgrqemekMKRKlDGETTDL 1067
Cdd:PHA02562   223 DELVEEAKTIKaeieELTDELLNLVMDIEDPSA---ALNKLNTAAAKIKSKIE-QFQKVIK-------MYEK-GGVCPTC 290
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1068 QDQLLELQQQIEELKQQLARKEEELQAALARVDDEVGQKNNLLKQ---LRDLQSQLAELHEDLESE-------KAARAKA 1137
Cdd:PHA02562   291 TQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQskkLLELKNKISTNKQSLITLvdkakkvKAAIEEL 370
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....
gi 1785379715 1138 EKQRRDLGEELEALKTELEDtLDSTAAQQELRAKREQEVTDLKK 1181
Cdd:PHA02562   371 QAEFVDNAEELAKLQDELDK-IVKTKSELVKEKYHRGIVTDLLK 413
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
1379-1940 7.69e-03

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 41.49  E-value: 7.69e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1379 RMEDQGGMVEAMEEAKKKSYKELEFLQQRfdekhqinDKLEKTRNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLA 1458
Cdd:TIGR00618  220 RKQVLEKELKHLREALQQTQQSHAYLTQK--------REAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARK 291
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1459 EEK--NISARYGE-ERDRAEAEAREKETKALSLSRALEEAIDLKDELD----RQNKQLRAEMDDLVSSKDDVGKNVHELE 1531
Cdd:TIGR00618  292 AAPlaAHIKAVTQiEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSieeqRRLLQTLHSQEIHIRDAHEVATSIREIS 371
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1532 RSKRALEQQVQEMKTQIEELEDELQAI--EDGKLRLEVNMQAMKAQFERDLQN-----RDDSNDEKKKLLFKQVREMEVE 1604
Cdd:TIGR00618  372 CQQHTLTQHIHTLQQQKTTLTQKLQSLckELDILQREQATIDTRTSAFRDLQGqlahaKKQQELQQRYAELCAAAITCTA 451
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1605 LEEERKQKSQI-----LAAKKKLEMDLQDMESQMDSANKGRDEAVKQLKKLQLQFKEVWREVEETRAARDEIFVQSR--- 1676
Cdd:TIGR00618  452 QCEKLEKIHLQesaqsLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRrmq 531
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1677 ---DNEKKLKSLEAELL-QLQEDLAAAERAKRQAQQERDDLAdELSNGVSGKSALLDEKRALEMRISQLEEELDEEQSNT 1752
Cdd:TIGR00618  532 rgeQTYAQLETSEEDVYhQLTSERKQRASLKEQMQEIQQSFS-ILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDML 610
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1753 ELINDRyRKLTLQVETITTELSA-ERSFSQKAENARQQMERQNKEL-KVKLNEMDSTMRSKYKITIASLEAKISQLEEQM 1830
Cdd:TIGR00618  611 ACEQHA-LLRKLQPEQDLQDVRLhLQQCSQELALKLTALHALQLTLtQERVREHALSIRVLPKELLASRQLALQKMQSEK 689
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1831 EQESKERII---ANKLVRRAEKRLKEVLLQVEEERRNADQFKEQLEKANIRMKQLKRQLEEAEEEA--SRANSNRRRLQR 1905
Cdd:TIGR00618  690 EQLTYWKEMlaqCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVlkARTEAHFNNNEE 769
                          570       580       590       600
                   ....*....|....*....|....*....|....*....|....
gi 1785379715 1906 ---------ELEDVTESAESMNREVTTLRSRLSKLERQQRKRAP 1940
Cdd:TIGR00618  770 vtaalqtgaELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIP 813
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
1246-1525 7.83e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 40.86  E-value: 7.83e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1246 AKQDSEQRRKKLEQQVSEFQIRTNESEKVKFELAEKLQKLQAELDGVSGALGSTEGKSIKLTKDLSTVQSQLQDTQELLQ 1325
Cdd:COG4942     32 SAAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQER 111
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1326 EETRQ---KLNFSSRVRQLEEEKNNLMENLEEEESAKAQLSRQLQALQQQLLESKKRMEDQGGMVEAMEEAKKKsykELE 1402
Cdd:COG4942    112 EQRRRlaeQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQA---ELT 188
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1403 FLQQRFDEKHQINDKLEKTRNRLQQELDdlmvdldhqrqivSNLEKKQKKFDQMLAEEKNIsaryGEERDRAEAEAREKE 1482
Cdd:COG4942    189 TLLSEQRAQQAKLAQLLEERKKTLAQLN-------------SELSADQKKLEELRANESRL----KNEIASAEAAAAKAR 251
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|...
gi 1785379715 1483 TKALSLSRALEEAIDLKDELDRQNKQLRAEMDDLVSSKDDVGK 1525
Cdd:COG4942    252 EAAAAAEAAAARARAAEAKRTGETYKPTAPEKMLISSTGGFGA 294
PRK09039 PRK09039
peptidoglycan -binding protein;
1111-1286 9.10e-03

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 40.33  E-value: 9.10e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1111 KQLRDLQSQLAELHEDLESEKAARAkaekqrrDLGEELEALKTELEDTLDSTAAQQELRAKREQEVTDLKKTIEEDVKVR 1190
Cdd:PRK09039    53 SALDRLNSQIAELADLLSLERQGNQ-------DLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQEL 125
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785379715 1191 DAQVTEMRQRHNQvVEEISEQLEQARRfkgnlekvkqtlesentdlikEVKNLQAAKQDSEQRRKKLEQQVSEFQIRTNE 1270
Cdd:PRK09039   126 DSEKQVSARALAQ-VELLNQQIAALRR---------------------QLAALEAALDASEKRDRESQAKIADLGRRLNV 183
                          170
                   ....*....|....*.
gi 1785379715 1271 SekvkfeLAEKLQKLQ 1286
Cdd:PRK09039   184 A------LAQRVQELN 193
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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