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Conserved domains on  [gi|1907188718|ref|XP_036009859|]
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phagosome assembly factor 1 isoform X1 [Mus musculus]

Protein Classification

UPF0183 family protein( domain architecture ID 10508485)

UPF0183 family protein similar to Homo sapiens protein C16orf70

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
UPF0183 pfam03676
Uncharacterized protein family (UPF0183); This family of proteins includes Lin-10 from C. ...
1-267 1.56e-134

Uncharacterized protein family (UPF0183); This family of proteins includes Lin-10 from C. elegans.


:

Pssm-ID: 427439  Cd Length: 395  Bit Score: 385.91  E-value: 1.56e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188718   1 MYIYSGNSLQDTKAPVMPLSCFLGNVYAESVDVLRDGTGPSGLRLRLLAAGCGPGvladAKMRVFERAVYFGDSCQDVLS 80
Cdd:pfam03676 159 MSIYDGSSLSDARAPSLPLSCYCGQLYLEEVEVLLDEGNTTGLKLQFYTEGSGRV----LRRSTLKREINFGDSTQDVLS 234
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188718  81 MLGSPHKVFYKSEDKMKIHSPSPHKQVPSKCNDYFFNYFTLGVDILFDANTHKVKKFVLHTNYPGHYNFNIYHRCEFKIP 160
Cdd:pfam03676 235 ELGAPSKIFYKSEDKMKIHSPSDHRPLPTKCSDYFFNYFTLGLDILFDGSTHRVKKFVLHTNFPGHYNFNIYHRCNFRIP 314
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188718 161 LAIKKAIAQRvaildsacgwtyrpaqpslhhllfpENAGGQTEIcTTYSKWDSIQELLGHPVEKPVVLHRSSSPNNTNPF 240
Cdd:pfam03676 315 LSSGAAQTKS-------------------------EENKDLNFI-TPYTKWDEVKKALGGPSERPVVLNRASSTNTTNPF 368
                         250       260
                  ....*....|....*....|....*..
gi 1907188718 241 GSTFCFGLQRMIFEVMQNNHIASVTLY 267
Cdd:pfam03676 369 GSTFCYGYQNIIFEVMKNGHIASVTLY 395
 
Name Accession Description Interval E-value
UPF0183 pfam03676
Uncharacterized protein family (UPF0183); This family of proteins includes Lin-10 from C. ...
1-267 1.56e-134

Uncharacterized protein family (UPF0183); This family of proteins includes Lin-10 from C. elegans.


Pssm-ID: 427439  Cd Length: 395  Bit Score: 385.91  E-value: 1.56e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188718   1 MYIYSGNSLQDTKAPVMPLSCFLGNVYAESVDVLRDGTGPSGLRLRLLAAGCGPGvladAKMRVFERAVYFGDSCQDVLS 80
Cdd:pfam03676 159 MSIYDGSSLSDARAPSLPLSCYCGQLYLEEVEVLLDEGNTTGLKLQFYTEGSGRV----LRRSTLKREINFGDSTQDVLS 234
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188718  81 MLGSPHKVFYKSEDKMKIHSPSPHKQVPSKCNDYFFNYFTLGVDILFDANTHKVKKFVLHTNYPGHYNFNIYHRCEFKIP 160
Cdd:pfam03676 235 ELGAPSKIFYKSEDKMKIHSPSDHRPLPTKCSDYFFNYFTLGLDILFDGSTHRVKKFVLHTNFPGHYNFNIYHRCNFRIP 314
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188718 161 LAIKKAIAQRvaildsacgwtyrpaqpslhhllfpENAGGQTEIcTTYSKWDSIQELLGHPVEKPVVLHRSSSPNNTNPF 240
Cdd:pfam03676 315 LSSGAAQTKS-------------------------EENKDLNFI-TPYTKWDEVKKALGGPSERPVVLNRASSTNTTNPF 368
                         250       260
                  ....*....|....*....|....*..
gi 1907188718 241 GSTFCFGLQRMIFEVMQNNHIASVTLY 267
Cdd:pfam03676 369 GSTFCYGYQNIIFEVMKNGHIASVTLY 395
 
Name Accession Description Interval E-value
UPF0183 pfam03676
Uncharacterized protein family (UPF0183); This family of proteins includes Lin-10 from C. ...
1-267 1.56e-134

Uncharacterized protein family (UPF0183); This family of proteins includes Lin-10 from C. elegans.


Pssm-ID: 427439  Cd Length: 395  Bit Score: 385.91  E-value: 1.56e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188718   1 MYIYSGNSLQDTKAPVMPLSCFLGNVYAESVDVLRDGTGPSGLRLRLLAAGCGPGvladAKMRVFERAVYFGDSCQDVLS 80
Cdd:pfam03676 159 MSIYDGSSLSDARAPSLPLSCYCGQLYLEEVEVLLDEGNTTGLKLQFYTEGSGRV----LRRSTLKREINFGDSTQDVLS 234
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188718  81 MLGSPHKVFYKSEDKMKIHSPSPHKQVPSKCNDYFFNYFTLGVDILFDANTHKVKKFVLHTNYPGHYNFNIYHRCEFKIP 160
Cdd:pfam03676 235 ELGAPSKIFYKSEDKMKIHSPSDHRPLPTKCSDYFFNYFTLGLDILFDGSTHRVKKFVLHTNFPGHYNFNIYHRCNFRIP 314
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188718 161 LAIKKAIAQRvaildsacgwtyrpaqpslhhllfpENAGGQTEIcTTYSKWDSIQELLGHPVEKPVVLHRSSSPNNTNPF 240
Cdd:pfam03676 315 LSSGAAQTKS-------------------------EENKDLNFI-TPYTKWDEVKKALGGPSERPVVLNRASSTNTTNPF 368
                         250       260
                  ....*....|....*....|....*..
gi 1907188718 241 GSTFCFGLQRMIFEVMQNNHIASVTLY 267
Cdd:pfam03676 369 GSTFCYGYQNIIFEVMKNGHIASVTLY 395
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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