|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
380-674 |
5.50e-21 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 99.24 E-value: 5.50e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 380 LHELEKNL-------------MQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEIQKLKDSLEEARE 446
Cdd:COG1196 195 LGELERQLeplerqaekaeryRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 447 QLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELS 526
Cdd:COG1196 275 ELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 527 EGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALE 606
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELE 434
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907190486 607 EEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKD 674
Cdd:COG1196 435 EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAD 502
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
339-644 |
7.50e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 92.31 E-value: 7.50e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 339 EKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEA 418
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 419 RQstskiDCEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLH 498
Cdd:COG1196 301 EQ-----DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 499 KLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLE 578
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907190486 579 EELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSR 644
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG 521
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
292-669 |
1.51e-18 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 91.67 E-value: 1.51e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 292 VEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKDketvfLQYRLQDLQqqYTESQKLSLKKDK 371
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQA-----LLKEKREYE--GYELLKEKEALER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 372 LLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDT---SLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQL 448
Cdd:TIGR02169 238 QKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKkikDLGEEEQLRVKEKIGELEAEIASLERSIAEKEREL 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 449 KVSDQNLTQSKEEAHLSASSLEDAHRKIEncllqdkqkeevikDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEG 528
Cdd:TIGR02169 318 EDAEERLAKLEAEIDKLLAEIEELEREIE--------------EERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 529 QRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEE 608
Cdd:TIGR02169 384 RDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD 463
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907190486 609 IEALRQEAKRKekmaKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEI 669
Cdd:TIGR02169 464 LSKYEQELYDL----KEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASI 520
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
378-765 |
8.94e-18 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 88.97 E-value: 8.94e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 378 ERLHELEKNLmqvqNSLREKEAELEKLqctTKELDTSLQEARQSTSKI--DCEALRAEIQKLKDSLEEAREQLKVSDQNL 455
Cdd:TIGR02169 681 ERLEGLKREL----SSLQSELRRIENR---LDELSQELSDASRKIGEIekEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 456 TQSKEEAHLSASSLEDAHRKIENclLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNA 535
Cdd:TIGR02169 754 ENVKSELKELEARIEELEEDLHK--LEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 536 EKEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEalrqE 615
Cdd:TIGR02169 832 EKEIQELQEQRIDLKEQIKSI-------EKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLR----E 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 616 AKRKEKMAKEHLrkldEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQtQLDSAIQKEKNCfq 695
Cdd:TIGR02169 901 LERKIEELEAQI----EKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQ-RVEEEIRALEPV-- 973
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 696 NMVSKEAYEELVRKsgncQDDLTQALEKLtqatsetkslnrslqqtQERKAQLEDEIAAYEERMKKLNME 765
Cdd:TIGR02169 974 NMLAIQEYEEVLKR----LDELKEKRAKL-----------------EEERKAILERIEEYEKKKREVFME 1022
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
427-758 |
6.25e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 86.14 E-value: 6.25e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 427 CEALRAEIQKLKDSLEEAREQLKVSdQNLTQSKEEAHLSASSLEDAHRKienclLQDKQKEEVIKDLQSQLHKLQKESSK 506
Cdd:COG1196 191 LEDILGELERQLEPLERQAEKAERY-RELKEELKELEAELLLLKLRELE-----AELEELEAELEELEAELEELEAELAE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 507 IEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLdedekkidelfhstQVSEQKQRELTNSIRKLEEELLEIKG 586
Cdd:COG1196 265 LEAELEELRLELEELELELEEAQAEEYELLAELARLEQDI--------------ARLEERRRELEERLEELEEELAELEE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 587 LLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSL---NKYNSSQKVIQ 663
Cdd:COG1196 331 ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAelaAQLEELEEAEE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 664 ELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVS-KEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQ 742
Cdd:COG1196 411 ALLERLERLEEELEELEEALAELEEEEEEEEEALEEaAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA 490
|
330
....*....|....*.
gi 1907190486 743 ERKAQLEDEIAAYEER 758
Cdd:COG1196 491 ARLLLLLEAEADYEGF 506
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
275-919 |
4.74e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 83.57 E-value: 4.74e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 275 TKILKHLQEQKDSqcLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREEtscvIEKKDKETVFLQYRLQD 354
Cdd:TIGR02168 212 AERYKELKAELRE--LELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEK----LEELRLEVSELEEEIEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 355 LQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEArqstsKIDCEALRAEI 434
Cdd:TIGR02168 286 LQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL-----KEELESLEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 435 QKLKDSLEEAREQLKVSDQNLTQSKEEahlsassledahrkiencllqdkqkeevIKDLQSQLHKLQKESSKIEEERKHN 514
Cdd:TIGR02168 361 EELEAELEELESRLEELEEQLETLRSK----------------------------VAQLELQIASLNNEIERLEARLERL 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 515 RQRLQELSSELSEGQRRLSNAEKEKslLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQ 594
Cdd:TIGR02168 413 EDRRERLQQEIEELLKKLEEAELKE--LQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQAR 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 595 LKKSKEQEKALEEEIEALRQEAKRKEKMAKEH-----LRKLDEEKEnlQAELTSRSSHLDSSLNKYNSSQKVIQELNAEI 669
Cdd:TIGR02168 491 LDSLERLQENLEGFSEGVKALLKNQSGLSGILgvlseLISVDEGYE--AAIEAALGGRLQAVVVENLNAAKKAIAFLKQN 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 670 ARQKDSIMILQTQLDSAIQ--------KEKNCFQNMVSKEAYEELVRKSGN-------CQDDLTQALEKLTQ-------- 726
Cdd:TIGR02168 569 ELGRVTFLPLDSIKGTEIQgndreilkNIEGFLGVAKDLVKFDPKLRKALSyllggvlVVDDLDNALELAKKlrpgyriv 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 727 ------------ATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQV 794
Cdd:TIGR02168 649 tldgdlvrpggvITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQI 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 795 lqwqRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPAKLTP--KETCRHHRENDQIMNNVEQWAKEQKIA 872
Cdd:TIGR02168 729 ----SALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEelAEAEAEIEELEAQIEQLKEELKALREA 804
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 1907190486 873 NEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEEKK 919
Cdd:TIGR02168 805 LDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELS 851
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
429-768 |
6.69e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 82.81 E-value: 6.69e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 429 ALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIE 508
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 509 EERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDE-KKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGL 587
Cdd:TIGR02169 751 QEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRiPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEY 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 588 LEEKREQLKKS----KEQEKALEEEIEALRQEAKRKEKMAKEH---LRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQK 660
Cdd:TIGR02169 831 LEKEIQELQEQridlKEQIKSIEKEIENLNGKKEELEEELEELeaaLRDLESRLGDLKKERDELEAQLRELERKIEELEA 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 661 VIQELNAEIARQKDSIMILQTQLdSAIQKEKNCFQNMVSKEAYEELVRKSgncQDDLTQALEKL----TQATSETKSLNR 736
Cdd:TIGR02169 911 QIEKKRKRLSELKAKLEALEEEL-SEIEDPKGEDEEIPEEELSLEDVQAE---LQRVEEEIRALepvnMLAIQEYEEVLK 986
|
330 340 350
....*....|....*....|....*....|..
gi 1907190486 737 SLQQTQERKAQLEDEIAAYEERMKKLNmELKK 768
Cdd:TIGR02169 987 RLDELKEKRAKLEEERKAILERIEEYE-KKKR 1017
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
201-770 |
6.80e-16 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 82.80 E-value: 6.80e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 201 VIQEHQETLKRLSEVWQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTATHrhpptssEDCEDITKILKH 280
Cdd:PRK03918 170 VIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV-------KELEELKEEIEE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 281 LQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLElDLHGLREETSCVIEKKDKETVFLqYRLQDLQQQYT 360
Cdd:PRK03918 243 LEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDEL-REIEKRLSRLE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 361 ESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQcTTKELDTSLQEARQSTSKIDCEALRAEIQKL--- 437
Cdd:PRK03918 321 EEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYE-EAKAKKEELERLKKRLTGLTPEKLEKELEELeka 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 438 KDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENC--LLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNR 515
Cdd:PRK03918 400 KEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCgrELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLR 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 516 QRLQELSSELSEGQRRLSNAEKEKSLlqKTLDEDEKKIDelfhsTQVSEQKQRELtnsiRKLEEELLEIKGlleeKREQL 595
Cdd:PRK03918 480 KELRELEKVLKKESELIKLKELAEQL--KELEEKLKKYN-----LEELEKKAEEY----EKLKEKLIKLKG----EIKSL 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 596 KKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDs 675
Cdd:PRK03918 545 KKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKK- 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 676 imiLQTQLDSA-------------IQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQ 742
Cdd:PRK03918 624 ---LEEELDKAfeelaetekrleeLRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLK 700
|
570 580
....*....|....*....|....*...
gi 1907190486 743 ERKaqleDEIAAYEERMKKLNMELKKLQ 770
Cdd:PRK03918 701 EEL----EEREKAKKELEKLEKALERVE 724
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
206-843 |
8.07e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.68 E-value: 8.07e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 206 QETLKRLSEVWQKVSEQDDLIQELRNKLacsNSLVLEREEAL--IKLQAEFASYTATHRHpptssedceditKILKHLQE 283
Cdd:COG1196 175 EEAERKLEATEENLERLEDILGELERQL---EPLERQAEKAEryRELKEELKELEAELLL------------LKLRELEA 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 284 QKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETSCV---IEKKDKETVFLQYRLQDLQQQYT 360
Cdd:COG1196 240 ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELlaeLARLEQDIARLEERRRELEERLE 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 361 ESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKlqcttkeldtsLQEARQstskidcEALRAEIQKLKDS 440
Cdd:COG1196 320 ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAE-----------AEEALL-------EAEAELAEAEEEL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 441 LEEAREQLKVSDQNLTQSKEEAHLsASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQE 520
Cdd:COG1196 382 EELAEELLEALRAAAELAAQLEEL-EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 521 LSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKidelfHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKE 600
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEELAEAAAR-----LLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAA 535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 601 QEKALEEEIEALRQEAKRKE----KMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSI 676
Cdd:COG1196 536 YEAALEAALAAALQNIVVEDdevaAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARY 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 677 MILQTQLDSAIQKEKNCFQNMVSKEAYEELVRKSGncqDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYE 756
Cdd:COG1196 616 YVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVT---LEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEE 692
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 757 ERMKKLNMELKKLQgfqqqseqevhnfdkklEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKEP 836
Cdd:COG1196 693 LELEEALLAEEEEE-----------------RELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEE 755
|
....*..
gi 1907190486 837 YSPPAKL 843
Cdd:COG1196 756 LPEPPDL 762
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
278-835 |
1.39e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.03 E-value: 1.39e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 278 LKHLQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREE---TSCVIEKKDKETVFLQYRLQD 354
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKElyaLANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 355 LQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQstskiDCEALRAEI 434
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE-----QLETLRSKV 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 435 QKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQ-----KEEVIKDLQSQLHKLQKESSKIEE 509
Cdd:TIGR02168 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQaeleeLEEELEELQEELERLEEALEELRE 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 510 ERKHNRQRLQELSSELSEGQRRL-----------------SNAEKEKSL-----------------------------LQ 543
Cdd:TIGR02168 469 ELEEAEQALDAAERELAQLQARLdslerlqenlegfsegvKALLKNQSGlsgilgvlselisvdegyeaaieaalggrLQ 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 544 KTLDEDEKKIDELFHS--------------TQVSEQKQRELTNSIRK-----------LEEELLEIKGLLE--------- 589
Cdd:TIGR02168 549 AVVVENLNAAKKAIAFlkqnelgrvtflplDSIKGTEIQGNDREILKniegflgvakdLVKFDPKLRKALSyllggvlvv 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 590 ---------------------------------------------EKREQLKKSKEQEKALEEEIEALRQEAKRKEKM-- 622
Cdd:TIGR02168 629 ddldnalelakklrpgyrivtldgdlvrpggvitggsaktnssilERRREIEELEEKIEELEEKIAELEKALAELRKEle 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 623 -AKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKE 701
Cdd:TIGR02168 709 eLEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE 788
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 702 AyeelvrKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVH 781
Cdd:TIGR02168 789 A------QIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE 862
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....
gi 1907190486 782 NFDKKLEEMsnqvlqwQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKE 835
Cdd:TIGR02168 863 ELEELIEEL-------ESELEALLNERASLEEALALLRSELEELSEELRELESK 909
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
389-772 |
2.71e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 80.87 E-value: 2.71e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 389 QVQNSLREKEAELEKLQCTTKELDTSLQearqstsKIDCEALRAEI-QKLKDSLEEAreqlkvsdqnltqskeEAHLSAS 467
Cdd:TIGR02168 176 ETERKLERTRENLDRLEDILNELERQLK-------SLERQAEKAERyKELKAELREL----------------ELALLVL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 468 SLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQkesskieeerkhnrqrlqelsSELSEGQRRLSNAEKEKSLLQKTLD 547
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELE---------------------EKLEELRLEVSELEEEIEELQKELY 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 548 EDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEK---MAK 624
Cdd:TIGR02168 292 ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAeleELE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 625 EHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAiQKEKNCFQNMVSKEAYE 704
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA-ELKELQAELEELEEELE 450
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907190486 705 ELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGF 772
Cdd:TIGR02168 451 ELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGL 518
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
278-829 |
5.79e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.60 E-value: 5.79e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 278 LKHLQEQKDSQclhvEEYQNLVKDLR--------MELEAVSEQKKKIMKDMMKLELDLHGLREEtscvIEKKDKETVFLQ 349
Cdd:COG1196 202 LEPLERQAEKA----ERYRELKEELKeleaelllLKLRELEAELEELEAELEELEAELEELEAE----LAELEAELEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 350 YRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQstskiDCEA 429
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEE-----ELEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 430 LRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEE 509
Cdd:COG1196 349 AEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 510 ERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLE 589
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 590 EKREQLKKS----------------KEQEKALEEEIEALRQEAKRKE----KMAKEHLRKLDEEKENLQAELTSRSSHLD 649
Cdd:COG1196 509 GVKAALLLAglrglagavavligveAAYEAALEAALAAALQNIVVEDdevaAAAIEYLKAAKAGRATFLPLDKIRARAAL 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 650 SSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATS 729
Cdd:COG1196 589 AAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRR 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 730 ETKSLNRSLQQTQE----RKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDL 805
Cdd:COG1196 669 ELLAALLEAEAELEelaeRLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
|
570 580
....*....|....*....|....*...
gi 1907190486 806 KMLAAKESQ----LREFQEEMATLRESL 829
Cdd:COG1196 749 EEEALEELPeppdLEELERELERLEREI 776
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
140-829 |
7.09e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.72 E-value: 7.09e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 140 ELEFRTQELQASYCSLLQYQSILEKQtsdlLVLHRhcklKEDEDPENKGDHPKVRIYTSPCVIQEHQETL----KRLSEV 215
Cdd:TIGR02168 278 ELEEEIEELQKELYALANEISRLEQQ----KQILR----ERLANLERQLEELEAQLEELESKLDELAEELaeleEKLEEL 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 216 WQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASytathrhpptssedceditkilkhLQEQKDSQCLHVEEY 295
Cdd:TIGR02168 350 KEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQ------------------------LELQIASLNNEIERL 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 296 QNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLR-EETSCVIEKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQ 374
Cdd:TIGR02168 406 EARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELA 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 375 DKDERLHELEKNLMQVQNSLRE-KEAELEKLQCT----------------TKELDTSLQEARQSTSKIDCEALRAEIQKL 437
Cdd:TIGR02168 486 QLQARLDSLERLQENLEGFSEGvKALLKNQSGLSgilgvlselisvdegyEAAIEAALGGRLQAVVVENLNAAKKAIAFL 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 438 KDSLEEAR----------EQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKL------- 500
Cdd:TIGR02168 566 KQNELGRVtflpldsikgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAkklrpgy 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 501 ------------------------------QKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDE 550
Cdd:TIGR02168 646 rivtldgdlvrpggvitggsaktnssilerRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 551 KKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKE---KMAKEHL 627
Cdd:TIGR02168 726 RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKeelKALREAL 805
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 628 RKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAiqkekncfqnmvsKEAYEELv 707
Cdd:TIGR02168 806 DELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEEL-------------EELIEEL- 871
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 708 rksgncQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKL 787
Cdd:TIGR02168 872 ------ESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
730 740 750 760
....*....|....*....|....*....|....*....|..
gi 1907190486 788 EEmsnqvlQWQRQHQSDLKMLAAKESQLREFQEEMATLRESL 829
Cdd:TIGR02168 946 SE------EYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
467-835 |
1.80e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 78.19 E-value: 1.80e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 467 SSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEE----ERKHNRQRLQELSSELSEGQRRLSNAEKEKSLL 542
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERyqalLKEKREYEGYELLKEKEALERQKEAIERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 543 QKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKL-EEELLEIKGLLEEKREQLKKSKEQEKALEEEIEalrqEAKRKEK 621
Cdd:TIGR02169 250 EEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSIAEKERELE----DAEERLA 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 622 MAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIarqkdsimilqtqldsaiqkekncfqnmvske 701
Cdd:TIGR02169 326 KLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAEL-------------------------------- 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 702 ayEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVH 781
Cdd:TIGR02169 374 --EEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIK 451
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1907190486 782 NFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKE 835
Cdd:TIGR02169 452 KQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
203-846 |
2.46e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 74.71 E-value: 2.46e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 203 QEHQETLKRLSEVWQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTAthrhpptsseDCEDITKILKHLQ 282
Cdd:TIGR02168 239 EELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN----------EISRLEQQKQILR 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 283 EQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREEtscvIEKKDKETVFLQYRLQDLQQQYTES 362
Cdd:TIGR02168 309 ERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAE----LEELEAELEELESRLEELEEQLETL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 363 QKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEIQKLKDSLE 442
Cdd:TIGR02168 385 RSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALE 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 443 EAREQLKVSDQNLTQSKEEAHLSAS------SLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKL---------------- 500
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQLQArldsleRLQENLEGFSEGVKALLKNQSGLSGILGVLSELisvdegyeaaieaalg 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 501 --------------------QKESSK----IEEERKHNRQRLQELSSELSEGQRR----LSNAEKEKSLLQKTLD----- 547
Cdd:TIGR02168 545 grlqavvvenlnaakkaiafLKQNELgrvtFLPLDSIKGTEIQGNDREILKNIEGflgvAKDLVKFDPKLRKALSyllgg 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 548 -----------EDEKKID----------ELFHSTQVSEQKQRELTNS-------IRKLEEELLEIKGLLEEKREQLKKSK 599
Cdd:TIGR02168 625 vlvvddldnalELAKKLRpgyrivtldgDLVRPGGVITGGSAKTNSSilerrreIEELEEKIEELEEKIAELEKALAELR 704
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 600 EQEKALEEEIEALRQEAKRKEK---MAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSI 676
Cdd:TIGR02168 705 KELEELEEELEQLRKELEELSRqisALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 677 MILQTQLDSAIQkekncfQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYE 756
Cdd:TIGR02168 785 EELEAQIEQLKE------ELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 757 ERMK-------KLNMELKKLQGFQQQSEQEVH-------NFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEM 822
Cdd:TIGR02168 859 AEIEeleelieELESELEALLNERASLEEALAllrseleELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRI 938
|
730 740
....*....|....*....|....
gi 1907190486 823 ATLRESLLADEKEPYSPPAKLTPK 846
Cdd:TIGR02168 939 DNLQERLSEEYSLTLEEAEALENK 962
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
484-828 |
7.98e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 72.79 E-value: 7.98e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 484 KQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvs 563
Cdd:TIGR02169 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEEL------- 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 564 EQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEI--EALRQEAKRKEKMAKEHlRKLDEEKENLQAEL 641
Cdd:TIGR02169 743 EEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLshSRIPEIQAELSKLEEEV-SRIEARLREIEQKL 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 642 TSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDS--AIQKEKNCFQNMVSKEaYEELVRKSGNCQDDLTQ 719
Cdd:TIGR02169 822 NRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEEleEELEELEAALRDLESR-LGDLKKERDELEAQLRE 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 720 ALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKL------NMELKKLQGFQQQSEQEVHNF---DKKLEEM 790
Cdd:TIGR02169 901 LERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDeeipeeELSLEDVQAELQRVEEEIRALepvNMLAIQE 980
|
330 340 350
....*....|....*....|....*....|....*...
gi 1907190486 791 SNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRES 828
Cdd:TIGR02169 981 YEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
374-833 |
8.05e-13 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 72.77 E-value: 8.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 374 QDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIdcEALRAEIQKL--------------KD 439
Cdd:PRK02224 202 KDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREEL--ETLEAEIEDLretiaeterereelAE 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 440 SLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCllqDKQKEEV----------IKDLQSQLHKLQKESSKIEE 509
Cdd:PRK02224 280 EVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREEL---EDRDEELrdrleecrvaAQAHNEEAESLREDADDLEE 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 510 ERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKID---------ELFHSTQVSE-----QKQRELTNSIR 575
Cdd:PRK02224 357 RAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGdapvdlgnaEDFLEELREErdelrEREAELEATLR 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 576 KLEEELLEIKGLLE---------------------EKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAK--EHLRKLDE 632
Cdd:PRK02224 437 TARERVEEAEALLEagkcpecgqpvegsphvetieEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEaeDRIERLEE 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 633 EKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVS-KEAYEELvrksg 711
Cdd:PRK02224 517 RREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAElKERIESL----- 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 712 ncqDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNME-----LKKLQGFQQQSEQEVHNFDKK 786
Cdd:PRK02224 592 ---ERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEfdearIEEAREDKERAEEYLEQVEEK 668
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 1907190486 787 LEEMSNQvlqwQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADE 833
Cdd:PRK02224 669 LDELREE----RDDLQAEIGAVENELEELEELRERREALENRVEALE 711
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
266-834 |
8.20e-13 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 72.79 E-value: 8.20e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 266 TSSEDCEDITKILKHLQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKDKET 345
Cdd:PRK03918 162 NAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIE 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 346 VfLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVqNSLREKEAELEKLQCTTKELDTSLQEARQSTSKI 425
Cdd:PRK03918 242 E-LEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL-KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 426 DCEA--LRAEIQKLkDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENC-LLQDKQKEEVIKDLQSQLHKLQK 502
Cdd:PRK03918 320 EEEIngIEERIKEL-EEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELeRLKKRLTGLTPEKLEKELEELEK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 503 ESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKS---LLQKTLDEDEKK--IDELFHSTQVSEQKQRELTNSIRKL 577
Cdd:PRK03918 399 AKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGkcpVCGRELTEEHRKelLEEYTAELKRIEKELKEIEEKERKL 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 578 EEELLEIKGLLEEKRE--QLKKSKEQEKALEEEIEALRQEakrKEKMAKEHLRKLDEEKENLQAELTSrsshLDSSLNKY 655
Cdd:PRK03918 479 RKELRELEKVLKKESEliKLKELAEQLKELEEKLKKYNLE---ELEKKAEEYEKLKEKLIKLKGEIKS----LKKELEKL 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 656 NSSQKVIQELNAEIARQKDSIMILQTQLdsaiqkekncfqnmvskeayEELVRKSGNCQDDLTQALEKLTQATSETKSLN 735
Cdd:PRK03918 552 EELKKKLAELEKKLDELEEELAELLKEL--------------------EELGFESVEELEERLKELEPFYNEYLELKDAE 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 736 RSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGfqQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQL 815
Cdd:PRK03918 612 KELEREEKELKKLEEELDKAFEELAETEKRLEELRK--ELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRR 689
|
570
....*....|....*....
gi 1907190486 816 REFQEEMATLRESLLADEK 834
Cdd:PRK03918 690 EEIKKTLEKLKEELEEREK 708
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
201-641 |
9.08e-13 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 72.38 E-value: 9.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 201 VIQEHQETLKRLSEVWQKV-----------SEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTAThrhpptsSE 269
Cdd:PRK02224 242 VLEEHEERREELETLEAEIedlretiaeteREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAV-------EA 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 270 DCEDITKILKHLQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLRE---ETSCVIEKKDKETV 346
Cdd:PRK02224 315 RREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREaveDRREEIEELEEEIE 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 347 FLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKEldtslQEARQSTSKID 426
Cdd:PRK02224 395 ELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECG-----QPVEGSPHVET 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 427 CEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKE--EAHLSASSLEDAHRKIENCLlqdKQKEEVIKDLQSQLHKLQKES 504
Cdd:PRK02224 470 IEEDRERVEELEAELEDLEEEVEEVEERLERAEDlvEAEDRIERLEERREDLEELI---AERRETIEEKRERAEELRERA 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 505 SKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvseQKQRELTNSIRKLEEELLEI 584
Cdd:PRK02224 547 AELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLL--------AAIADAEDEIERLREKREAL 618
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907190486 585 KGLLEEKREQLKKSKEQEKALEEE-----IEALRQEAKRKEKM---AKEHLRKLDEEKENLQAEL 641
Cdd:PRK02224 619 AELNDERRERLAEKRERKRELEAEfdearIEEAREDKERAEEYleqVEEKLDELREERDDLQAEI 683
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
520-839 |
1.10e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 72.41 E-value: 1.10e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 520 ELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSK 599
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 600 EQEKALEEEIEALRQEAKRKEkmakEHLRKLDEEKENLQAELtsrsshldsslnkynsSQKVIQELNAEIARQKDSIMIL 679
Cdd:TIGR02169 751 QEIENVKSELKELEARIEELE----EDLHKLEEALNDLEARL----------------SHSRIPEIQAELSKLEEEVSRI 810
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 680 QTQLDSAIQKEKncfqnmvskeayeelvrksgncqdDLTQALEKLTQATSETKSLNRSLqqtQERKAQLEDEIAAYEERM 759
Cdd:TIGR02169 811 EARLREIEQKLN------------------------RLTLEKEYLEKEIQELQEQRIDL---KEQIKSIEKEIENLNGKK 863
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 760 KKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKEPYSP 839
Cdd:TIGR02169 864 EELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED 943
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
565-923 |
5.85e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.09 E-value: 5.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 565 QKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEaLRQEAKRKEK-MAKEHLRKLDEEKENLQAELTS 643
Cdd:TIGR02168 172 ERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKE-LKAELRELELaLLVLRLEELREELEELQEELKE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 644 RSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMvskeayEELVRKSGNCQDDLTQALEK 723
Cdd:TIGR02168 251 AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQK------QILRERLANLERQLEELEAQ 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 724 LTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQvlqwQRQHQS 803
Cdd:TIGR02168 325 LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ----IASLNN 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 804 DLKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPAKLTPKETCRHHRENDQIMNNVEQWAKEQKIANEKLGNKLREQ 883
Cdd:TIGR02168 401 EIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAA 480
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1907190486 884 VKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEEKKLKAG 923
Cdd:TIGR02168 481 ERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSG 520
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
514-770 |
6.12e-12 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 69.94 E-value: 6.12e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 514 NRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVS--EQKQRELTNSIRKLEEELLEIK---GLL 588
Cdd:COG4913 608 NRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSwdEIDVASAEREIAELEAELERLDassDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 589 EEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNsSQKVIQELNAE 668
Cdd:COG4913 688 AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERF-AAALGDAVERE 766
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 669 IARQkdsimiLQTQLDSAIQKEKNCFQNMVS-----KEAYEELVRKSGNCQDDLTQALEKLTQATSE-----TKSLNRSL 738
Cdd:COG4913 767 LREN------LEERIDALRARLNRAEEELERamrafNREWPAETADLDADLESLPEYLALLDRLEEDglpeyEERFKELL 840
|
250 260 270
....*....|....*....|....*....|....*..
gi 1907190486 739 QQTQERK-----AQLEDEIAAYEERMKKLNMELKKLQ 770
Cdd:COG4913 841 NENSIEFvadllSKLRRAIREIKERIDPLNDSLKRIP 877
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
575-923 |
7.67e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.58 E-value: 7.67e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 575 RKLE---EELLEIKGLLEEKREQLKKSKEQ-EKAleEEIEALRQEAKRKEKMAK-EHLRKLDEEKENLQAELTSRSSHLD 649
Cdd:COG1196 179 RKLEateENLERLEDILGELERQLEPLERQaEKA--ERYRELKEELKELEAELLlLKLRELEAELEELEAELEELEAELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 650 SSlnkynssQKVIQELNAEIARQKDSIMILQTQLDSAiqkekncfqnmvsKEAYEELVRKSGNCQDDLTQALEKLTQATS 729
Cdd:COG1196 257 EL-------EAELAELEAELEELRLELEELELELEEA-------------QAEEYELLAELARLEQDIARLEERRRELEE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 730 EtkslnrsLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLA 809
Cdd:COG1196 317 R-------LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 810 AKESQLREFQEEMATLRESLLADEKEpysppakltpketcRHHRENDQIMNNVEQWAKEQKIANEKLgnKLREQVKYIAK 889
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEEALLER--------------LERLEEELEELEEALAELEEEEEEEEE--ALEEAAEEEAE 453
|
330 340 350
....*....|....*....|....*....|....
gi 1907190486 890 LTGEKDHLHNVMVHLQQENKKLKNEIEEKKLKAG 923
Cdd:COG1196 454 LEEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
429-639 |
1.21e-11 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 67.48 E-value: 1.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 429 ALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIE 508
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 509 EERKHNRQRLQEL------------------SSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQREL 570
Cdd:COG4942 97 AELEAQKEELAELlralyrlgrqpplalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907190486 571 TNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQA 639
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
462-686 |
1.61e-11 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 67.10 E-value: 1.61e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 462 AHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSL 541
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 542 LQKTLDEDEKKIDELFHSTQVSEQKQREL----TNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAK 617
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLAlllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907190486 618 RKEKMAKEhlrkLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSA 686
Cdd:COG4942 175 ELEALLAE----LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
377-919 |
2.08e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 68.17 E-value: 2.08e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 377 DERLHELEKNLMQ---VQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIdcEALRAEIQKLKDSLEEAREQLKVSDQ 453
Cdd:PRK03918 175 KRRIERLEKFIKRtenIEELIKEKEKELEEVLREINEISSELPELREELEKL--EKEVKELEELKEEIEELEKELESLEG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 454 NLTQSKEEAHLSASSLEDAHRKIENclLQDKQKE-EVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRL 532
Cdd:PRK03918 253 SKRKLEEKIRELEERIEELKKEIEE--LEEKVKElKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 533 SNAEKEKSLLQKT---LDEDEKKIDELFHSTQVSEqKQRELTNSIRKLEEELL-----EIKGLLEEKREQLKKSKEQEKA 604
Cdd:PRK03918 331 KELEEKEERLEELkkkLKELEKRLEELEERHELYE-EAKAKKEELERLKKRLTgltpeKLEKELEELEKAKEEIEEEISK 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 605 LEEEIEALRQEAKRKEKmAKEHLRKLDEEKENLQAELTSRssHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLD 684
Cdd:PRK03918 410 ITARIGELKKEIKELKK-AIEELKKAKGKCPVCGRELTEE--HRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELE 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 685 SAIQKEKNCFQNMVSKEAYEELVRK-SGNCQDDLTQA-------LEKLTQATSETKSLNRSLQQTQE---RKAQLEDEIA 753
Cdd:PRK03918 487 KVLKKESELIKLKELAEQLKELEEKlKKYNLEELEKKaeeyeklKEKLIKLKGEIKSLKKELEKLEElkkKLAELEKKLD 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 754 AYEERMKKLNMELKKLqGFqqQSEQEVHNFDKKLEEMSNQVLQwqrqhqsdlkmLAAKESQLREFQEEMATLRESLLADE 833
Cdd:PRK03918 567 ELEEELAELLKELEEL-GF--ESVEELEERLKELEPFYNEYLE-----------LKDAEKELEREEKELKKLEEELDKAF 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 834 KEPYSPPAKLtpkETCRHHRENDQIMNNVEQWakeqkianEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKN 913
Cdd:PRK03918 633 EELAETEKRL---EELRKELEELEKKYSEEEY--------EELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKE 701
|
....*.
gi 1907190486 914 EIEEKK 919
Cdd:PRK03918 702 ELEERE 707
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
548-835 |
2.98e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.79 E-value: 2.98e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 548 EDEKKIDELFHSTQVSEQKQRELtNSIRKLEEELLEIKGLLEEKREQLKK-SKEQEKALE-EEIEALRQEAKRKEKMAKe 625
Cdd:TIGR02169 154 ERRKIIDEIAGVAEFDRKKEKAL-EELEEVEENIERLDLIIDEKRQQLERlRREREKAERyQALLKEKREYEGYELLKE- 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 626 hLRKLDEEKENLQAELTSRSSHLDsslnkynSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVS--KEAY 703
Cdd:TIGR02169 232 -KEALERQKEAIERQLASLEEELE-------KLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGelEAEI 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 704 EELVRKSGNCQDDLTQALEKLTQATSE-------TKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQS 776
Cdd:TIGR02169 304 ASLERSIAEKERELEDAEERLAKLEAEidkllaeIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAET 383
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907190486 777 EQEVHNFDKKLEEMSNQV-------------LQWQRQHQSDLKM-LAAKESQLREFQEEMATLRESLLADEKE 835
Cdd:TIGR02169 384 RDELKDYREKLEKLKREInelkreldrlqeeLQRLSEELADLNAaIAGIEAKINELEEEKEDKALEIKKQEWK 456
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
379-643 |
6.79e-11 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 66.30 E-value: 6.79e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 379 RLHELEKNLMQVQNSLREKEAELEKLQcttkeldtSLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVSDQNLTQS 458
Cdd:pfam05557 3 ELIESKARLSQLQNEKKQMELEHKRAR--------IELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 459 KEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKE 538
Cdd:pfam05557 75 AELNRLKKKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 539 KSLL---QKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEE--ELLEIKGLLEEKREQLKKSKEQEKALEEEIEALR 613
Cdd:pfam05557 155 RQNLekqQSSLAEAEQRIKELEFEIQSQEQDSEIVKNSKSELARipELEKELERLREHNKHLNENIENKLLLKEEVEDLK 234
|
250 260 270
....*....|....*....|....*....|
gi 1907190486 614 QEAKRKEKMaKEHLRKLDEEKENLQAELTS 643
Cdd:pfam05557 235 RKLEREEKY-REEAATLELEKEKLEQELQS 263
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
348-581 |
1.12e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 64.40 E-value: 1.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 348 LQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEarqstskidc 427
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE---------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 428 eaLRAEIQKLKDSLeeaREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKI 507
Cdd:COG4942 95 --LRAELEAQKEEL---AELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907190486 508 EEErkhnRQRLQELSSELSEGQRRLSNAEKEKsllQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEEL 581
Cdd:COG4942 170 EAE----RAELEALLAELEEERAALEALKAER---QKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
201-835 |
1.18e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.86 E-value: 1.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 201 VIQEHQETLKRLSEVWQKVSEQDDLIQELRNklacsnslvLEREEALIKLQAEFASYTATHRhpptsseDCEDITKILKH 280
Cdd:TIGR02169 192 IIDEKRQQLERLRREREKAERYQALLKEKRE---------YEGYELLKEKEALERQKEAIER-------QLASLEEELEK 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 281 LQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMkleldlhglrEETSCVIEKKDKETVFLQYRLQDLQQQYT 360
Cdd:TIGR02169 256 LTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKI----------GELEAEIASLERSIAEKERELEDAEERLA 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 361 ESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKidceaLRAEIQKLKDS 440
Cdd:TIGR02169 326 KLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKD-----YREKLEKLKRE 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 441 LEE---AREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENcLLQDKQKEevIKDLQSQLHKLQKESSKIEEERKHNRQR 517
Cdd:TIGR02169 401 INElkrELDRLQEELQRLSEELADLNAAIAGIEAKINELEE-EKEDKALE--IKKQEWKLEQLAADLSKYEQELYDLKEE 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 518 LQELSSELSEGQRRLSNAEKEKSLLQKTL--------------------------------------------------D 547
Cdd:TIGR02169 478 YDRVEKELSKLQRELAEAEAQARASEERVrggraveevlkasiqgvhgtvaqlgsvgeryataievaagnrlnnvvvedD 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 548 EDEKKIDEL-----------------------------------------------------FHSTQVSE--QKQRELTN 572
Cdd:TIGR02169 558 AVAKEAIELlkrrkagratflplnkmrderrdlsilsedgvigfavdlvefdpkyepafkyvFGDTLVVEdiEAARRLMG 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 573 SIR--KLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEakrkekmakehLRKLDEEKENLQAELTSRSSHLDS 650
Cdd:TIGR02169 638 KYRmvTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRER-----------LEGLKRELSSLQSELRRIENRLDE 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 651 SLNKYNSS-------QKVIQELNAEIARQKDSIMILQTQLDSAIQKekncfqnmvsKEAYEELVRKSGNCQDDLTQALEK 723
Cdd:TIGR02169 707 LSQELSDAsrkigeiEKEIEQLEQEEEKLKERLEELEEDLSSLEQE----------IENVKSELKELEARIEELEEDLHK 776
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 724 LTQATSETK-SLNRS-LQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQH 801
Cdd:TIGR02169 777 LEEALNDLEaRLSHSrIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI 856
|
730 740 750
....*....|....*....|....*....|....
gi 1907190486 802 QSDLKMLAAKESQLREFQEEMATLRESLLADEKE 835
Cdd:TIGR02169 857 ENLNGKKEELEEELEELEAALRDLESRLGDLKKE 890
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
338-829 |
1.92e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 65.04 E-value: 1.92e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 338 IEKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSL----------REKEAELEKLQCT 407
Cdd:TIGR04523 147 IKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLsnlkkkiqknKSLESQISELKKQ 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 408 TKELDTSLQEARQSTSKIDCEALRAE--IQKLKDSLEEAREQLKVSDQNLTQSKEEAhlsaSSLEDAHRKIENCL--LQD 483
Cdd:TIGR04523 227 NNQLKDNIEKKQQEINEKTTEISNTQtqLNQLKDEQNKIKKQLSEKQKELEQNNKKI----KELEKQLNQLKSEIsdLNN 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 484 KQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVS 563
Cdd:TIGR04523 303 QKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSY 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 564 EQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEaKRKEKMAKEHLRKLDEEKENLQAELTS 643
Cdd:TIGR04523 383 KQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKET-IIKNNSEIKDLTNQDSVKELIIKNLDN 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 644 RSSHLdsslnkynssQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMvskeayeelvrksgncqddlTQALEK 723
Cdd:TIGR04523 462 TRESL----------ETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEK--------------------KELEEK 511
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 724 LTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKlqgfqQQSEQEVHNFDKKLEEMSNQ---VLQWQRQ 800
Cdd:TIGR04523 512 VKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKK-----ENLEKEIDEKNKEIEELKQTqksLKKKQEE 586
|
490 500
....*....|....*....|....*....
gi 1907190486 801 HQSDLKMLAAKESQLREFQEEMATLRESL 829
Cdd:TIGR04523 587 KQELIDQKEKEKKDLIKEIEEKEKKISSL 615
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
426-639 |
3.05e-10 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 64.55 E-value: 3.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 426 DCEALRAEIQKLKDS---LEEAREQLKVsdqnLTQSKE--EAHLSASSLEDAHRKIENcLLQDKQKEEVIKDLQSQLHKL 500
Cdd:COG4913 226 AADALVEHFDDLERAheaLEDAREQIEL----LEPIRElaERYAAARERLAELEYLRA-ALRLWFAQRRLELLEAELEEL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 501 QKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAE-KEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKLEE 579
Cdd:COG4913 301 RAELARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEER-------ERRRARLEALLAALGL 373
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 580 ELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQA 639
Cdd:COG4913 374 PLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
374-923 |
3.64e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.39 E-value: 3.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 374 QDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKEldtslQEARQSTskidcEALRAEIQKLKDSLEEAREQLKVSD- 452
Cdd:PTZ00121 1238 DAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKA-----EEARKAD-----ELKKAEEKKKADEAKKAEEKKKADEa 1307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 453 QNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRL 532
Cdd:PTZ00121 1308 KKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKA 1387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 533 SNAEKEKSLlQKTLDEDEKKIDELfHSTQVSEQKQREL---TNSIRKLEEelleikglLEEKREQLKKSKEQEKALEEEI 609
Cdd:PTZ00121 1388 EEKKKADEA-KKKAEEDKKKADEL-KKAAAAKKKADEAkkkAEEKKKADE--------AKKKAEEAKKADEAKKKAEEAK 1457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 610 EALRQEAKRKEKMAKEHLRKLDEEK---ENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDsimilqtQLDSA 686
Cdd:PTZ00121 1458 KAEEAKKKAEEAKKADEAKKKAEEAkkaDEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKAD-------EAKKA 1530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 687 IQKEKNCFQNMVSKEAYEELVRKSGNCQ--DDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNM 764
Cdd:PTZ00121 1531 EEAKKADEAKKAEEKKKADELKKAEELKkaEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAE 1610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 765 ELKKLQGFQQQSEQEvhnfdKKLEEMSNQVLQWQRQHQSDLKmlaaKESQLREFQEEMATLRESLLADEKEpysppaKLT 844
Cdd:PTZ00121 1611 EAKKAEEAKIKAEEL-----KKAEEEKKKVEQLKKKEAEEKK----KAEELKKAEEENKIKAAEEAKKAEE------DKK 1675
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907190486 845 PKETCRHHRENDQIMNNVEQWAKEQKIANEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEEKKLKAG 923
Cdd:PTZ00121 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEE 1754
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
352-789 |
3.74e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 63.89 E-value: 3.74e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 352 LQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQcttKELDTSLQEARQSTSKIdcEALR 431
Cdd:TIGR04523 323 LEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLK---KENQSYKQEIKNLESQI--NDLE 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 432 AEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEER 511
Cdd:TIGR04523 398 SKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSI 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 512 KHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKLEEELLEIKGLLEEK 591
Cdd:TIGR04523 478 NKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSL-------KEKIEKLESEKKEKESKISDLEDELNKD 550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 592 REQLKKS--KEQEKALEEEIEALRQE---AKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELN 666
Cdd:TIGR04523 551 DFELKKEnlEKEIDEKNKEIEELKQTqksLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLS 630
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 667 AEIARQKDSIMILQTQLDS---AIQKEKNCFQNMVSKEayEELVRKSgncqDDLTQALEKLTQATSETKSLNRSLQQTQE 743
Cdd:TIGR04523 631 SIIKNIKSKKNKLKQEVKQikeTIKEIRNKWPEIIKKI--KESKTKI----DDIIELMKDWLKELSLHYKKYITRMIRIK 704
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 1907190486 744 RKAQLEdeiaayeERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEE 789
Cdd:TIGR04523 705 DLPKLE-------EKYKEIEKELKKLDEFSKELENIIKNFNKKFDD 743
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
446-835 |
6.17e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 63.16 E-value: 6.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 446 EQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEER---KHNRQRLQELS 522
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELeklEKEVKELEELK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 523 SELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELtNSIRKLEEELLEIKGLLEEKREQLKKSKEQE 602
Cdd:PRK03918 238 EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL-KELKEKAEEYIKLSEFYEEYLDELREIEKRL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 603 KALEEEIEALRQEAKRKEKMaKEHLRKLDEEKENLQAELtsrsSHLDSSLNKYNSSQKVIQELNAEIARQKD-SIMILQT 681
Cdd:PRK03918 317 SRLEEEINGIEERIKELEEK-EERLEELKKKLKELEKRL----EELEERHELYEEAKAKKEELERLKKRLTGlTPEKLEK 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 682 QLDSAIQKEKNCfqnmvsKEAYEELVRKSGNCQD---DLTQALEKLTQATSETKSLNRSLqqTQERKAQLedeIAAYEER 758
Cdd:PRK03918 392 ELEELEKAKEEI------EEEISKITARIGELKKeikELKKAIEELKKAKGKCPVCGREL--TEEHRKEL---LEEYTAE 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 759 MKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSN-----QVLQWQRQHQSDLKMLAAKEsqLREFQEEMATLRESLLADE 833
Cdd:PRK03918 461 LKRIEKELKEIEEKERKLRKELRELEKVLKKESEliklkELAEQLKELEEKLKKYNLEE--LEKKAEEYEKLKEKLIKLK 538
|
..
gi 1907190486 834 KE 835
Cdd:PRK03918 539 GE 540
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
449-625 |
1.60e-09 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 61.33 E-value: 1.60e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 449 KVSDQNLTQSKEEAhlsASSLEDAHRKIENcllqdkQKEEVIKDLQSQLHKLQKEsskIEEERKHNRQRLQELSSELseg 528
Cdd:PRK12704 27 KIAEAKIKEAEEEA---KRILEEAKKEAEA------IKKEALLEAKEEIHKLRNE---FEKELRERRNELQKLEKRL--- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 529 QRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGL-LEEKREQLKKSKEQEkaLEE 607
Cdd:PRK12704 92 LQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLtAEEAKEILLEKVEEE--ARH 169
|
170
....*....|....*...
gi 1907190486 608 EIEALrqeAKRKEKMAKE 625
Cdd:PRK12704 170 EAAVL---IKEIEEEAKE 184
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
521-761 |
1.76e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 60.93 E-value: 1.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 521 LSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKE 600
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAAL-------KKEEKALLKQLAALERRIAALARRIRALEQELAALEA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 601 QEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQ 680
Cdd:COG4942 84 ELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 681 TQLDSAIQKEKNcfqnmvSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMK 760
Cdd:COG4942 164 ALRAELEAERAE------LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
.
gi 1907190486 761 K 761
Cdd:COG4942 238 A 238
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
490-641 |
7.81e-09 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 57.24 E-value: 7.81e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 490 IKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfHSTQVSEQKQRE 569
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNV-RNNKEYEALQKE 97
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907190486 570 LTN---SIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAEL 641
Cdd:COG1579 98 IESlkrRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKI 172
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
483-689 |
7.84e-09 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 59.65 E-value: 7.84e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 483 DKQKEEVIKDLQSQLHKLQ--KESSKI---EEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELF 557
Cdd:COG3206 181 EEQLPELRKELEEAEAALEefRQKNGLvdlSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 558 HSTQvseqkqreltnsIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRkekMAKEHLRKLDEEKENL 637
Cdd:COG3206 261 QSPV------------IQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQ---EAQRILASLEAELEAL 325
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1907190486 638 QAELTSrsshLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQK 689
Cdd:COG3206 326 QAREAS----LQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQR 373
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
616-841 |
1.40e-08 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 57.92 E-value: 1.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 616 AKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAiqkekncfq 695
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEER--------- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 696 nmvsKEAYEELVR---KSGNCQDDLTQAL--EKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQ 770
Cdd:COG3883 85 ----REELGERARalyRSGGSVSYLDVLLgsESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELE 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907190486 771 GFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPA 841
Cdd:COG3883 161 ALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAA 231
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
394-770 |
1.67e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 58.63 E-value: 1.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 394 LREKEAELEKLQCTTKELDTSLQEARQSTSKIdcEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSasSLEDAH 473
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAELQEELEELEEEL--EELEAELEELREELEKLEKLLQLLPLYQELEALEAELA--ELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 474 RKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERK-HNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKK 552
Cdd:COG4717 149 EELEERLEELRELEEELEELEAELAELQEELEELLEQLSlATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 553 IDELFHSTQVSEQKQR----------------------ELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIE 610
Cdd:COG4717 229 LEQLENELEAAALEERlkearlllliaaallallglggSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQ 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 611 ALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKE 690
Cdd:COG4717 309 ALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELR 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 691 KNCFQnmvsKEAYEELVRKSGNCQDDLTQALEKLTQATSETkslnrSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQ 770
Cdd:COG4717 389 AALEQ----AEEYQELKEELEELEEQLEELLGELEELLEAL-----DEEELEEELEELEEELEELEEELEELREELAELE 459
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
376-917 |
2.14e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 58.11 E-value: 2.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 376 KDERLHELEKNLMQVQNSLREKEAELEKLQCTTKEldtslQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVSDQNL 455
Cdd:TIGR04523 31 QDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNK-----DEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 456 TQSKEEahlsassledahrkiencllqdkqkeevIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNA 535
Cdd:TIGR04523 106 SKINSE----------------------------IKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 536 EKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKRE---QLKKSKEQEKALEEEIEAL 612
Cdd:TIGR04523 158 NNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSlesQISELKKQNNQLKDNIEKK 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 613 RQEakrkekmakehLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSImilqTQLDSAIQKEKN 692
Cdd:TIGR04523 238 QQE-----------INEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQL----NQLKSEISDLNN 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 693 CFQNMVSKEAYEELVRKsgncQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGF 772
Cdd:TIGR04523 303 QKEQDWNKELKSELKNQ----EKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 773 QQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPAKLTPKETC--R 850
Cdd:TIGR04523 379 NQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIikN 458
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 851 HHRENDQIMNNVEQWAKEQKIANEKLGNK---LREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEE 917
Cdd:TIGR04523 459 LDNTRESLETQLKVLSRSINKIKQNLEQKqkeLKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEK 528
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
201-852 |
2.65e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 58.21 E-value: 2.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 201 VIQEHQETLKRLsevwqkVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTATHRHPPTSSEDCedITKILKH 280
Cdd:pfam15921 261 LLQQHQDRIEQL------ISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLEST--VSQLRSE 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 281 LQEQKDSQCLHVEEYQ-------NLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKDK-------ETV 346
Cdd:pfam15921 333 LREAKRMYEDKIEELEkqlvlanSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRlwdrdtgNSI 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 347 FLQYRLQDLQQQYTESQKLSLKKDKLlqdKDERLHELEKNLMQVQNslreKEAELEKLQCTTKELDTSLQEARQ-----S 421
Cdd:pfam15921 413 TIDHLRRELDDRNMEVQRLEALLKAM---KSECQGQMERQMAAIQG----KNESLEKVSSLTAQLESTKEMLRKvveelT 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 422 TSKIDCEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAhrkiencllqdKQKEEVIKDLQSQLHKLQ 501
Cdd:pfam15921 486 AKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHL-----------KNEGDHLRNVQTECEALK 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 502 KESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEEL 581
Cdd:pfam15921 555 LQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEK 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 582 LEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEakrkekmakehLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKV 661
Cdd:pfam15921 635 VKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNE-----------LNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKS 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 662 IQelnAEIARQKDSIMILQTQLDSAIQkekncfqnmVSKEAYEELVRKSGNCqDDLTQALEKLTQATSETkslNRSLQQT 741
Cdd:pfam15921 704 AQ---SELEQTRNTLKSMEGSDGHAMK---------VAMGMQKQITAKRGQI-DALQSKIQFLEEAMTNA---NKEKHFL 767
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 742 QERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQW----QRQHQSDLKMLAAKESQLRE 817
Cdd:pfam15921 768 KEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECqdiiQRQEQESVRLKLQHTLDVKE 847
|
650 660 670
....*....|....*....|....*....|....*
gi 1907190486 818 FQEEMATLRESLladekepysPPAKLTPKETCRHH 852
Cdd:pfam15921 848 LQGPGYTSNSSM---------KPRLLQPASFTRTH 873
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
202-763 |
2.79e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 2.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 202 IQEHQETLKRLSEvwqKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTATHRHpptSSEDCEDITKILKHL 281
Cdd:COG1196 248 LEELEAELEELEA---ELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIAR---LEERRRELEERLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 282 QEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKDKETVFLQYRLQDLQQQYTE 361
Cdd:COG1196 322 EEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 362 SQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKI-DCEALRAEIQKLKDS 440
Cdd:COG1196 402 LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLaELLEEAALLEAALAE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 441 LEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQ---------DKQKEEVIKD------LQSQLHKLQKESS 505
Cdd:COG1196 482 LLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAgavavligvEAAYEAALEAalaaalQNIVVEDDEVAAA 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 506 KIEEERKHNRQRLQELSSELSEGQRRLSNAEK-----EKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNS----IRK 576
Cdd:COG1196 562 AIEYLKAAKAGRATFLPLDKIRARAALAAALArgaigAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAalrrAVT 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 577 LEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYN 656
Cdd:COG1196 642 LAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEEL 721
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 657 SSQKVIQELNAEIARQkdsimiLQTQLDSAIQKEKNCFQNMVSKEAYEELVRKsgncQDDLTQALEKL----TQATSETK 732
Cdd:COG1196 722 EEEALEEQLEAEREEL------LEELLEEEELLEEEALEELPEPPDLEELERE----LERLEREIEALgpvnLLAIEEYE 791
|
570 580 590
....*....|....*....|....*....|.
gi 1907190486 733 SLNRSLQQTQERKAQLEDEIAAYEERMKKLN 763
Cdd:COG1196 792 ELEERYDFLSEQREDLEEARETLEEAIEEID 822
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
516-758 |
2.92e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.00 E-value: 2.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 516 QRLQELSSELSEGQRRLSNAEKEKSLLQKtLDEDEKKIDELFhsTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQL 595
Cdd:COG4913 228 DALVEHFDDLERAHEALEDAREQIELLEP-IRELAERYAAAR--ERLAELEYLRAALRLWFAQRRLELLEAELEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 596 KKSKEQEKALEEEIEALRQEAKRkekmAKEHLRKLD-EEKENLQAEltsrsshldsslnkynssqkvIQELNAEIARQKD 674
Cdd:COG4913 305 ARLEAELERLEARLDALREELDE----LEAQIRGNGgDRLEQLERE---------------------IERLERELEERER 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 675 SIMILQTQLDSAiqkeknCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKslnRSLQQTQERKAQLEDEIAA 754
Cdd:COG4913 360 RRARLEALLAAL------GLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAE---AALRDLRRELRELEAEIAS 430
|
....
gi 1907190486 755 YEER 758
Cdd:COG4913 431 LERR 434
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
411-646 |
3.57e-08 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 57.34 E-value: 3.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 411 LDTSLQEARQSTSKIDceaLRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVI 490
Cdd:pfam05667 261 LAGTEATSGASRSAQD---LAELLSSFSGSSTTDTGLTKGSRFTHTEKLQFTNEAPAATSSPPTKVETEEELQQQREEEL 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 491 KDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEgqRRLSNAEKEKSLLQKT-----LDEDEKKIDELFHSTQVSEQ 565
Cdd:pfam05667 338 EELQEQLEDLESSIQELEKEIKKLESSIKQVEEELEE--LKEQNEELEKQYKVKKktldlLPDAEENIAKLQALVDASAQ 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 566 KQRELTNSIRKLEEELL-EIKGLLEEKREQLKKSK---EQEKALEEEIEALRQEAKRKEKMAKEhlrkLDEEKENLQAEl 641
Cdd:pfam05667 416 RLVELAGQWEKHRVPLIeEYRALKEAKSNKEDESQrklEEIKELREKIKEVAEEAKQKEELYKQ----LVAEYERLPKD- 490
|
....*
gi 1907190486 642 TSRSS 646
Cdd:pfam05667 491 VSRSA 495
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
402-737 |
8.81e-08 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 56.45 E-value: 8.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 402 EKLQCTTKELDTSLQEARQSTSKiDCEALRAEIQKlkdsleeAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIE---- 477
Cdd:PLN02939 71 ENGQLENTSLRTVMELPQKSTSS-DDDHNRASMQR-------DEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQnaek 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 478 NCLLQDKQKEEVIKDLQsqlhklqkessKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELF 557
Cdd:PLN02939 143 NILLLNQARLQALEDLE-----------KILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELL 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 558 HSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKA---LEEE---IEALRQEAKRKEKMAKEHLRKLD 631
Cdd:PLN02939 212 IRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERvfkLEKErslLDASLRELESKFIVAQEDVSKLS 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 632 --------EEKENLQAELTSRSSHLDSS---LNKYNSSQKVIQELNAEIARQKDS------IMILQTQLDSAIQKEKNCF 694
Cdd:PLN02939 292 plqydcwwEKVENLQDLLDRATNQVEKAalvLDQNQDLRDKVDKLEASLKEANVSkfssykVELLQQKLKLLEERLQASD 371
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1907190486 695 QNMVSK-EAYEELVRKsgnCQDDLTQALEKltqatSETKSLNRS 737
Cdd:PLN02939 372 HEIHSYiQLYQESIKE---FQDTLSKLKEE-----SKKRSLEHP 407
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
483-794 |
1.11e-07 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 55.70 E-value: 1.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 483 DKQKEEVIKDLQsQLHKLQKESSKIEEERKHNRqRLQELSSELSEGQRRLSNAEKEKSLLQKTLDE-DEKKIDELfhstq 561
Cdd:PRK05771 15 KSYKDEVLEALH-ELGVVHIEDLKEELSNERLR-KLRSLLTKLSEALDKLRSYLPKLNPLREEKKKvSVKSLEEL----- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 562 vseqkqreltnsIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALrqeakrkekmakEHLRKLDEEKENLQael 641
Cdd:PRK05771 88 ------------IKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERL------------EPWGNFDLDLSLLL--- 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 642 tsRSSHLDS-----SLNKYNSSQKVIQELNAEIARQKdsimilqtqldsaiqKEKNCFQNMVSKEAYEELvrksgncqDD 716
Cdd:PRK05771 141 --GFKYVSVfvgtvPEDKLEELKLESDVENVEYISTD---------------KGYVYVVVVVLKELSDEV--------EE 195
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907190486 717 LTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNmelKKLQGFQQQSEQEVHNFDKKLEEMSNQV 794
Cdd:PRK05771 196 ELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELA---KKYLEELLALYEYLEIELERAEALSKFL 270
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
202-612 |
1.12e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.82 E-value: 1.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 202 IQEHQETLKRLSEVWQKVSEQDDLIQE----LRNKLACSNSLVLEREEALIKLQAEFASYTATHRHPPTSSEDCEDItki 277
Cdd:PRK02224 337 AQAHNEEAESLREDADDLEERAEELREeaaeLESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDF--- 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 278 LKHLQEQKDsqclhveEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETS---CVIEKKDKETVFLQYRLQD 354
Cdd:PRK02224 414 LEELREERD-------ELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSphvETIEEDRERVEELEAELED 486
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 355 LQQQYT------ESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARqstskidce 428
Cdd:PRK02224 487 LEEEVEeveerlERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKR--------- 557
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 429 alrAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAhlsassleDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIE 508
Cdd:PRK02224 558 ---EAAAEAEEEAEEAREEVAELNSKLAELKERI--------ESLERIRTLLAAIADAEDEIERLREKREALAELNDERR 626
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 509 EERKHNRQRLQELSSELSEGqrRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKLEEELLEIKGLl 588
Cdd:PRK02224 627 ERLAEKRERKRELEAEFDEA--RIEEAREDKERAEEYLEQVEEKLDEL-------REERDDLQAEIGAVENELEELEEL- 696
|
410 420
....*....|....*....|....
gi 1907190486 589 EEKREQLKKSKEQEKALEEEIEAL 612
Cdd:PRK02224 697 RERREALENRVEALEALYDEAEEL 720
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
267-616 |
1.15e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.23 E-value: 1.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 267 SSEDCEDITKILKHLQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREEtscviekkdketv 346
Cdd:TIGR02169 714 ASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEA------------- 780
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 347 flqyrLQDLQQQYTESQklslkkdkllqdkderlheleknlmqvqnsLREKEAELEKLQCTTKELDTSLQEARQSTSK-- 424
Cdd:TIGR02169 781 -----LNDLEARLSHSR------------------------------IPEIQAELSKLEEEVSRIEARLREIEQKLNRlt 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 425 IDCEALRAEIQKLKDSLEEAREQLKvsdqnltQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKES 504
Cdd:TIGR02169 826 LEKEYLEKEIQELQEQRIDLKEQIK-------SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQL 898
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 505 SKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQReLTNSIRKLE------ 578
Cdd:TIGR02169 899 RELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQR-VEEEIRALEpvnmla 977
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1907190486 579 ----EELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEA 616
Cdd:TIGR02169 978 iqeyEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
339-835 |
1.15e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 55.88 E-value: 1.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 339 EKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERL-HELEKNLMQVQNSLREKEAELEKLQCTTKELD--TSL 415
Cdd:pfam05483 253 ENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLtKELEDIKMSLQRSMSTQKALEEDLQIATKTICqlTEE 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 416 QEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQS 495
Cdd:pfam05483 333 KEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKK 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 496 QL---HKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTN 572
Cdd:pfam05483 413 ILaedEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTA 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 573 SIRKL---------------------EEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLD 631
Cdd:pfam05483 493 HCDKLllenkeltqeasdmtlelkkhQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSE 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 632 EEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQlDSAIQKEKNCFQNMVSKEAYEELVRKSG 711
Cdd:pfam05483 573 ENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKK-GSAENKQLNAYEIKVNKLELELASAKQK 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 712 NCQDDLTQALEKLTQATSETKslnrSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQqqsEQEVHNFDKKLEEMS 791
Cdd:pfam05483 652 FEEIIDNYQKEIEDKKISEEK----LLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALM---EKHKHQYDKIIEERD 724
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 1907190486 792 NQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKE 835
Cdd:pfam05483 725 SELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEE 768
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
487-660 |
1.25e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 54.84 E-value: 1.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 487 EEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDE----------- 555
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEErreelgerara 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 556 -------------LFHSTQVSE-----QKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAK 617
Cdd:COG3883 95 lyrsggsvsyldvLLGSESFSDfldrlSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE 174
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1907190486 618 RKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQK 660
Cdd:COG3883 175 AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAA 217
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
374-829 |
1.73e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 55.57 E-value: 1.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 374 QDKDERLHELEKNLMQVQNSLREkeaeLEKLQCTTKELDTSLQEARQSTSKIDCEA--LRAEIQKLKDSLEEAREQLKVS 451
Cdd:pfam01576 8 QAKEEELQKVKERQQKAESELKE----LEKKHQQLCEEKNALQEQLQAETELCAEAeeMRARLAARKQELEEILHELESR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 452 -------DQNLTQSKEEAHLSASSLEdAHRKIENCLLQDKQKEEV-----IKDLQSQLHKLQKESSKIEEERKHNRQRLQ 519
Cdd:pfam01576 84 leeeeerSQQLQNEKKKMQQHIQDLE-EQLDEEEAARQKLQLEKVtteakIKKLEEDILLLEDQNSKLSKERKLLEERIS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 520 ELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSK 599
Cdd:pfam01576 163 EFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKE 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 600 EQEKALEEEIE---ALRQEAKRKEKMAKEHLRKLDEEKEN--------------LQAELTSRSSHLDSSLNKYNSSQKVI 662
Cdd:pfam01576 243 EELQAALARLEeetAQKNNALKKIRELEAQISELQEDLESeraarnkaekqrrdLGEELEALKTELEDTLDTTAAQQELR 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 663 QELNAEIARQKDSI----MILQTQLDSAIQKEKNCFQNMvsKEAYEELVRKSGNCQ----------DDLTQALEKLTQAT 728
Cdd:pfam01576 323 SKREQEVTELKKALeeetRSHEAQLQEMRQKHTQALEEL--TEQLEQAKRNKANLEkakqalesenAELQAELRTLQQAK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 729 SET----KSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSD 804
Cdd:pfam01576 401 QDSehkrKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEE 480
|
490 500
....*....|....*....|....*
gi 1907190486 805 LKMLAAKESQLREFQEEMATLRESL 829
Cdd:pfam01576 481 TRQKLNLSTRLRQLEDERNSLQEQL 505
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
425-601 |
2.02e-07 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 54.86 E-value: 2.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 425 IDCEALRAEIQKLKdSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAhrkiencllqdkQKEEVIKDLQSQLHKLQKES 504
Cdd:COG2433 363 VDRDEVKARVIRGL-SIEEALEELIEKELPEEEPEAEREKEHEERELT------------EEEEEIRRLEEQVERLEAEV 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 505 SKIEEERKHNRQRLQELSSELSEGQRR----------LSNAEKEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNsI 574
Cdd:COG2433 430 EELEAELEEKDERIERLERELSEARSEerreirkdreISRLDREIERLERELEEERERIEEL-------KRKLERLKE-L 501
|
170 180
....*....|....*....|....*....
gi 1907190486 575 RKLE--EELLEIKGLLEEKREQLKKSKEQ 601
Cdd:COG2433 502 WKLEhsGELVPVKVVEKFTKEAIRRLEEE 530
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
378-624 |
2.22e-07 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 54.93 E-value: 2.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 378 ERLHELekNLMQVQNSLREKEAEleklqcttkeldtSLQEARqstskidceALRAEIQKLKDSLEEAREQLKVSDqnltq 457
Cdd:PRK05771 23 EALHEL--GVVHIEDLKEELSNE-------------RLRKLR---------SLLTKLSEALDKLRSYLPKLNPLR----- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 458 sKEEAHLSASSLEDAHRKIENCLLQDkqkEEVIKDLQSQLHKLQKESSKIEEERKhNRQRLQELSSELSEGQR------- 530
Cdd:PRK05771 74 -EEKKKVSVKSLEELIKDVEEELEKI---EKEIKELEEEISELENEIKELEQEIE-RLEPWGNFDLDLSLLLGfkyvsvf 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 531 --RLSNAEKEKSLLQK--------------------TLDEDEKKIDELFHSTQVSEQK---QRELTNSIRKLEEELLEIK 585
Cdd:PRK05771 149 vgTVPEDKLEELKLESdvenveyistdkgyvyvvvvVLKELSDEVEEELKKLGFERLEleeEGTPSELIREIKEELEEIE 228
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1907190486 586 GLLEEKREQLKKSKEQE----KALEEEIEALRQEAKRKEKMAK 624
Cdd:PRK05771 229 KERESLLEELKELAKKYleelLALYEYLEIELERAEALSKFLK 271
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
538-679 |
2.83e-07 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 54.48 E-value: 2.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 538 EKSLLQKTLDEDEKKIDELFHS---TQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKskeqekaLEEEIEALRQ 614
Cdd:COG2433 383 EELIEKELPEEEPEAEREKEHEereLTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIER-------LERELSEARS 455
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907190486 615 EAKRKEKMAKEhLRKLDEEKENLQAELtsrsshldsslnkyNSSQKVIQELNAEIARQKDSIMIL 679
Cdd:COG2433 456 EERREIRKDRE-ISRLDREIERLEREL--------------EEERERIEELKRKLERLKELWKLE 505
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
497-908 |
2.92e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.39 E-value: 2.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 497 LHKLQKESSKIEEERKHNRQrLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKID--ELFHSTQVSEQKQRELTNSI 574
Cdd:COG4717 70 LKELKELEEELKEAEEKEEE-YAELQEELEELEEELEELEAELEELREELEKLEKLLQllPLYQELEALEAELAELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 575 RKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNK 654
Cdd:COG4717 149 EELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 655 YNS--SQKVIQELNAEIARQKDSIMILQTQL----------------------------DSAIQKEKNCFQNMVSKEAYE 704
Cdd:COG4717 229 LEQleNELEAAALEERLKEARLLLLIAAALLallglggsllsliltiagvlflvlgllaLLFLLLAREKASLGKEAEELQ 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 705 ELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMkklnmelkKLQGFQQQSEQEVHNFD 784
Cdd:COG4717 309 ALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL--------QLEELEQEIAALLAEAG 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 785 KKLEEMSNQVLQWQRQHQSDLKMLAAKESQLRE----FQEEMATLRESLLADEKEPYSPPAKLTPKETCRHHRENDQIMN 860
Cdd:COG4717 381 VEDEEELRAALEQAEEYQELKEELEELEEQLEEllgeLEELLEALDEEELEEELEELEEELEELEEELEELREELAELEA 460
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1907190486 861 NVEQWAKEQKIAN-----EKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQEN 908
Cdd:COG4717 461 ELEQLEEDGELAEllqelEELKAELRELAEEWAALKLALELLEEAREEYREER 513
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
374-613 |
5.02e-07 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 53.76 E-value: 5.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 374 QDKDERLHELEKNLMQVQNSLREKEAELEKLQcttkelDTSLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVSDQ 453
Cdd:PRK11281 76 DRQKEETEQLKQQLAQAPAKLRQAQAELEALK------DDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNS 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 454 NL----TQSkEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDlqSQLHKLQKESSKIEEERKHNRQRLQ--ELSSELSE 527
Cdd:PRK11281 150 QLvslqTQP-ERAQAALYANSQRLQQIRNLLKGGKVGGKALRP--SQRVLLQAEQALLNAQNDLQRKSLEgnTQLQDLLQ 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 528 GQRRLSNA-----EKEKSLLQ-----KTLDEDEKKIDELfhstQVSEQKQRELTNSI--------RKLEEELLEIKGLLE 589
Cdd:PRK11281 227 KQRDYLTAriqrlEHQLQLLQeainsKRLTLSEKTVQEA----QSQDEAARIQANPLvaqeleinLQLSQRLLKATEKLN 302
|
250 260 270
....*....|....*....|....*....|.
gi 1907190486 590 E-------KREQLKKSKEQEKALEEEIEALR 613
Cdd:PRK11281 303 TltqqnlrVKNWLDRLTQSERNIKEQISVLK 333
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
546-779 |
5.26e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.91 E-value: 5.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 546 LDEDEKKIDELfhstqvsEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKE 625
Cdd:COG3883 18 IQAKQKELSEL-------QAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 626 HLRKLDEEKEN---LQAELTSRSshLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEkncfqnmvskea 702
Cdd:COG3883 91 RARALYRSGGSvsyLDVLLGSES--FSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKL------------ 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907190486 703 yEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQE 779
Cdd:COG3883 157 -AELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAA 232
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
201-821 |
6.15e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 53.82 E-value: 6.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 201 VIQEHQETLKRLSEVWQKVSEQDDLIQELRNKLA-CSNSLVLEREEALIKLQAEFASYTATHRHPPTSSEDCE-DITKIL 278
Cdd:TIGR00618 234 ALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRArIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEqQAQRIH 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 279 KHLQEQKDSQCLHVEEYQNLVKDlrmelEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKDKETVFLQyRLQDLQQQ 358
Cdd:TIGR00618 314 TELQSKMRSRAKLLMKRAAHVKQ-----QSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQ-HIHTLQQQ 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 359 YTESQKLSLKKDKLLQDKDERLHELEKnLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEAlRAEIQKLK 438
Cdd:TIGR00618 388 KTTLTQKLQSLCKELDILQREQATIDT-RTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLE-KIHLQESA 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 439 DSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAH---------------------------RKIENCLLQDKQKEEVIK 491
Cdd:TIGR00618 466 QSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQeepcplcgscihpnparqdidnpgpltRRMQRGEQTYAQLETSEE 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 492 DLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELT 571
Cdd:TIGR00618 546 DVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQ 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 572 NSIRK------LEEELLEIKGLLEEKREQLKKSKEQEKAL-----EEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAE 640
Cdd:TIGR00618 626 DLQDVrlhlqqCSQELALKLTALHALQLTLTQERVREHALsirvlPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTL 705
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 641 LTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDsAIQKEKNCFQNMVSKEAYEELVRksgncqddLTQA 720
Cdd:TIGR00618 706 LRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELM-HQARTVLKARTEAHFNNNEEVTA--------ALQT 776
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 721 LEKLTQATSETKSLNRSLQQTQERKAQLEDEIaayEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQ 800
Cdd:TIGR00618 777 GAELSHLAAEIQFFNRLREEDTHLLKTLEAEI---GQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLK 853
|
650 660
....*....|....*....|.
gi 1907190486 801 HQSDLKMLAAKESQLREFQEE 821
Cdd:TIGR00618 854 YEECSKQLAQLTQEQAKIIQL 874
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
444-643 |
7.74e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.52 E-value: 7.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 444 AREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSS 523
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERAR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 524 ELSEGQRRLSNAEkekSLLQ-KTLDEDekkIDELFHSTQVSEQkQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQE 602
Cdd:COG3883 94 ALYRSGGSVSYLD---VLLGsESFSDF---LDRLSALSKIADA-DADLLEELKADKAELEAKKAELEAKLAELEALKAEL 166
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1907190486 603 KALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTS 643
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAA 207
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
394-638 |
9.07e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.22 E-value: 9.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 394 LREKEAELEKLQCTTK-ELDTSLQEARQSTSKIDCEALR-AEIQKLKDSLEEAREQLKVSDQnltQSKEEAHLSASSLED 471
Cdd:PTZ00121 1502 AKKAAEAKKKADEAKKaEEAKKADEAKKAEEAKKADEAKkAEEKKKADELKKAEELKKAEEK---KKAEEAKKAEEDKNM 1578
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 472 AHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHN----------RQRLQELSSELSEGQRRLSNAEKE--- 538
Cdd:PTZ00121 1579 ALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKaeelkkaeeeKKKVEQLKKKEAEEKKKAEELKKAeee 1658
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 539 ----KSLLQKTLDEDEKKIDELfhstQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKAlEEEIEALRQ 614
Cdd:PTZ00121 1659 nkikAAEEAKKAEEDKKKAEEA----KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKA-EEENKIKAE 1733
|
250 260
....*....|....*....|....*..
gi 1907190486 615 EAKRKEKMAK---EHLRKLDEEKENLQ 638
Cdd:PTZ00121 1734 EAKKEAEEDKkkaEEAKKDEEEKKKIA 1760
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
467-827 |
9.89e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.73 E-value: 9.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 467 SSLEDAHRKIENclLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELS---EGQRRLSNAEKEKSLLQ 543
Cdd:PRK02224 187 GSLDQLKAQIEE--KEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEeheERREELETLEAEIEDLR 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 544 KTLDEDEKKIDELfhSTQVSEQKQRELT-----------------------NSIRKLEEELLEIKGLLEEKREQLKKSKE 600
Cdd:PRK02224 265 ETIAETEREREEL--AEEVRDLRERLEEleeerddllaeaglddadaeaveARREELEDRDEELRDRLEECRVAAQAHNE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 601 QEKALEEEIEALRQEAKRKEKMAKEhlrkLDEEKENLQAELTSRSSHLDsslnkynssqkviqELNAEIARQKDSIMILQ 680
Cdd:PRK02224 343 EAESLREDADDLEERAEELREEAAE----LESELEEAREAVEDRREEIE--------------ELEEEIEELRERFGDAP 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 681 TQLDSAiqkekncfqnmvskEAYEELVRksgncqDDLTQALEKLTQATSETKSLNRSLQQTQERKAQ---------LEDE 751
Cdd:PRK02224 405 VDLGNA--------------EDFLEELR------EERDELREREAELEATLRTARERVEEAEALLEAgkcpecgqpVEGS 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 752 -----IAAYEERMKKLNMELKKLQGfQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLR 826
Cdd:PRK02224 465 phvetIEEDRERVEELEAELEDLEE-EVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELR 543
|
.
gi 1907190486 827 E 827
Cdd:PRK02224 544 E 544
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
382-805 |
1.37e-06 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 52.36 E-value: 1.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 382 ELEKNLMQVQNSLREKEAE-LEKLQCTTKELD---TSLQEARQSTSKID-----CEALRAEIQKLKDSLEEAREQLKVSD 452
Cdd:PRK10929 27 QITQELEQAKAAKTPAQAEiVEALQSALNWLEerkGSLERAKQYQQVIDnfpklSAELRQQLNNERDEPRSVPPNMSTDA 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 453 QNltqskEEAHLSASSLEDAHRKIENclLQDKQKEevIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRL 532
Cdd:PRK10929 107 LE-----QEILQVSSQLLEKSRQAQQ--EQDRARE--ISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTA 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 533 SNAEkekSLLQKTldedekKIDELFHStQVSEQKQRELTnsirKLEEElleikgLLEEKREQLKKskeQEKALEEEIEAL 612
Cdd:PRK10929 178 LQAE---SAALKA------LVDELELA-QLSANNRQELA----RLRSE------LAKKRSQQLDA---YLQALRNQLNSQ 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 613 RQeakRKEKMAKEHLRKLDEEKENLQAELTSrsshldsslnKYNSSQKVIQELNAEiARQKDSIMILQTQLDSAIQKekn 692
Cdd:PRK10929 235 RQ---REAERALESTELLAEQSGDLPKSIVA----------QFKINRELSQALNQQ-AQRMDLIASQQRQAASQTLQ--- 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 693 cfqnmvskeayeelVRksgncqddltQALEKLT---QATSETKSLNRSLQQTQER------KAQLEDEIAayEERMKKLN 763
Cdd:PRK10929 298 --------------VR----------QALNTLReqsQWLGVSNALGEALRAQVARlpempkPQQLDTEMA--QLRVQRLR 351
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 1907190486 764 MElkKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDL 805
Cdd:PRK10929 352 YE--DLLNKQPQLRQIRQADGQPLTAEQNRILDAQLRTQREL 391
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
374-671 |
1.45e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.61 E-value: 1.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 374 QDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQ----STSKIDCEALRAEIQklkdSLEEAREQLK 449
Cdd:COG4913 606 FDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRlaeySWDEIDVASAEREIA----ELEAELERLD 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 450 VSDQNLTQSKEEAhlsassledahrkiencllqdKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELsselsegQ 529
Cdd:COG4913 682 ASSDDLAALEEQL---------------------EELEAELEELEEELDELKGEIGRLEKELEQAEEELDEL-------Q 733
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 530 RRLSNAEKEKSLLQKTLdedekkIDELFHS---TQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKS-KEQEKAL 605
Cdd:COG4913 734 DRLEAAEDLARLELRAL------LEERFAAalgDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREwPAETADL 807
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907190486 606 EEEIEALRQEAKRKEKMAKEHL-RKLDEEKENLQAELTSRSSHLDSSLNK-YNSSQKVIQELNAEIAR 671
Cdd:COG4913 808 DADLESLPEYLALLDRLEEDGLpEYEERFKELLNENSIEFVADLLSKLRRaIREIKERIDPLNDSLKR 875
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
484-838 |
1.51e-06 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 52.39 E-value: 1.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 484 KQKEEVIKDLQSQLHKLQKESSKIEEER----------------KHNRQRLQELSSELSEGQRRLSNAEKEKSLLQK--- 544
Cdd:COG5022 813 RSYLACIIKLQKTIKREKKLRETEEVEFslkaevliqkfgrslkAKKRFSLLKKETIYLQSAQRVELAERQLQELKIdvk 892
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 545 -------TLDEDEKKIDELFHSTQVSEQKQRE-LTNSIRKLEEELLEIKglLEEKREQLKKSKEQEKALEEEIEALRQEA 616
Cdd:COG5022 893 sisslklVNLELESEIIELKKSLSSDLIENLEfKTELIARLKKLLNNID--LEEGPSIEYVKLPELNKLHEVESKLKETS 970
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 617 KRKEKMAKEH------LRKLDEEKENLQAELTSRSSHLDS---SLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAI 687
Cdd:COG5022 971 EEYEDLLKKStilvreGNKANSELKNFKKELAELSKQYGAlqeSTKQLKELPVEVAELQSASKIISSESTELSILKPLQK 1050
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 688 QKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNME-- 765
Cdd:COG5022 1051 LKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLqe 1130
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 766 ----LKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQR--------QHQSDLKMLAAKESQLREFQEEMATLRESLLADE 833
Cdd:COG5022 1131 iskfLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALpspppfaaLSEKRLYQSALYDEKSKLSSSEVNDLKNELIALF 1210
|
....*
gi 1907190486 834 KEPYS 838
Cdd:COG5022 1211 SKIFS 1215
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
484-646 |
2.70e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.98 E-value: 2.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 484 KQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDE----------DEKKI 553
Cdd:COG3883 26 SELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEraralyrsggSVSYL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 554 DELFHSTQVSE------------QKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSK----EQEKALE---EEIEALRQ 614
Cdd:COG3883 106 DVLLGSESFSDfldrlsalskiaDADADLLEELKADKAELEAKKAELEAKLAELEALKaeleAAKAELEaqqAEQEALLA 185
|
170 180 190
....*....|....*....|....*....|..
gi 1907190486 615 EAKRKEKMAKEHLRKLDEEKENLQAELTSRSS 646
Cdd:COG3883 186 QLSAEEAAAEAQLAELEAELAAAEAAAAAAAA 217
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
550-765 |
2.82e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.31 E-value: 2.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 550 EKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKehLRK 629
Cdd:COG4717 52 EKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ--LLP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 630 LDEEKENLQAELtsrsSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDsaiqkekncfqnmvskeayEELVRK 709
Cdd:COG4717 130 LYQELEALEAEL----AELPERLEELEERLEELRELEEELEELEAELAELQEELE-------------------ELLEQL 186
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1907190486 710 SGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNME 765
Cdd:COG4717 187 SLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALE 242
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
138-730 |
3.70e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 3.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 138 QQELEfrtqELQASYCSLLQYQSILEKQTSDLLVLHRHCKLKEDEDpenkgdhpkvriytspcvIQEHQETLKRLSEVWQ 217
Cdd:COG1196 280 ELELE----EAQAEEYELLAELARLEQDIARLEERRRELEERLEEL------------------EEELAELEEELEELEE 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 218 KVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFAsytathrhpptssEDCEDITKILKHLQEQKDSQclhvEEYQN 297
Cdd:COG1196 338 ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA-------------EAEEELEELAEELLEALRAA----AELAA 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 298 LVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETScVIEKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKD 377
Cdd:COG1196 401 QLEELEEAEEALLERLERLEEELEELEEALAELEEEEE-EEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 378 ERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVSDQNLTQ 457
Cdd:COG1196 480 AELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVA 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 458 SKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKhnRQRLQELSSELSEGQRRLSNAEK 537
Cdd:COG1196 560 AAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADAR--YYVLGDTLLGRTLVAARLEAALR 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 538 EKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAK 617
Cdd:COG1196 638 RAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERL 717
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 618 RKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARqkdsimiLQTQLDS--AIqkekncfq 695
Cdd:COG1196 718 EEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER-------LEREIEAlgPV-------- 782
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 1907190486 696 NMVSKEAYEE-------LVRKsgncQDDLTQALEKLTQATSE 730
Cdd:COG1196 783 NLLAIEEYEEleerydfLSEQ----REDLEEARETLEEAIEE 820
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
714-936 |
4.15e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 4.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 714 QDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKL------ 787
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIaelrae 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 788 -----EEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPAKLTPKETCRHHRENDQimNNV 862
Cdd:COG4942 99 leaqkEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER--AEL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907190486 863 EQWAKEQKIANEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIE--EKKLKAGNPRICVKAFPPNK 936
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIArlEAEAAAAAERTPAAGFAALK 252
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
378-829 |
4.33e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.68 E-value: 4.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 378 ERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLkvsdQNLTQ 457
Cdd:COG4913 255 EPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREEL----DELEA 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 458 SKEEAhlSASSLEDAHRKIEncllqdkQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELsegQRRLSNAEK 537
Cdd:COG4913 331 QIRGN--GGDRLEQLEREIE-------RLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEA---AALLEALEE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 538 EKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEE----KREQLK--------KSKEQ---- 601
Cdd:COG4913 399 ELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEalglDEAELPfvgelievRPEEErwrg 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 602 --EKAL---------EEE-----IEALRQEAKR--------KEKMAKEHLRKLDEE--------KEN-----LQAELTSR 644
Cdd:COG4913 479 aiERVLggfaltllvPPEhyaaaLRWVNRLHLRgrlvyervRTGLPDPERPRLDPDslagkldfKPHpfrawLEAELGRR 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 645 SSHL--DS--SLNKYN--------------------------------SSQKVIQELNAEIARQKDSIMILQTQLDSAIQ 688
Cdd:COG4913 559 FDYVcvDSpeELRRHPraitragqvkgngtrhekddrrrirsryvlgfDNRAKLAALEAELAELEEELAEAEERLEALEA 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 689 KEKNCFQnmvSKEAYEELVRKSGNCQD---------DLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERM 759
Cdd:COG4913 639 ELDALQE---RREALQRLAEYSWDEIDvasaereiaELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEI 715
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907190486 760 KKLNMELKKLQGFQQQSEQEVHNFDKK--------LEEMSNQVLQWQRQHQsdlkMLAAKESQLREFQEEMATLRESL 829
Cdd:COG4913 716 GRLEKELEQAEEELDELQDRLEAAEDLarlelralLEERFAAALGDAVERE----LRENLEERIDALRARLNRAEEEL 789
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
428-746 |
4.82e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 50.74 E-value: 4.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 428 EALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEA----HLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKE 503
Cdd:pfam02463 173 EALKKLIEETENLAELIIDLEELKLQELKLKEQAKkaleYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 504 SSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLE 583
Cdd:pfam02463 253 IESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKK 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 584 IKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQ 663
Cdd:pfam02463 333 EKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLE 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 664 ELNAEIARQKDSIMILQTQLD---SAIQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQ 740
Cdd:pfam02463 413 LARQLEDLLKEEKKEELEILEeeeESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSR 492
|
....*.
gi 1907190486 741 TQERKA 746
Cdd:pfam02463 493 QKLEER 498
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
292-829 |
5.95e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.50 E-value: 5.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 292 VEEYQNLVKDLRMELEAVSE----QKKKIMKDMMKLELDLHGLREETSCVIEKKDKETVFLQYRLQDLQQQYTESQKLSL 367
Cdd:pfam15921 80 LEEYSHQVKDLQRRLNESNElhekQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKC 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 368 KKDKLLQDKDERLHELEKNLMQVQNSLRE--------KEAELEKL------------------QCTTKELDT--SLQEAR 419
Cdd:pfam15921 160 LKEDMLEDSNTQIEQLRKMMLSHEGVLQEirsilvdfEEASGKKIyehdsmstmhfrslgsaiSKILRELDTeiSYLKGR 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 420 QSTSKIDCEALRAE--------IQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKI-ENCLLQDKQKEEVI 490
Cdd:pfam15921 240 IFPVEDQLEALKSEsqnkiellLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIqEQARNQNSMYMRQL 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 491 KDLQSQLHKLQkesSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEK-----------SLLQKTLDEDEKKIDEL-FH 558
Cdd:pfam15921 320 SDLESTVSQLR---SELREAKRMYEDKIEELEKQLVLANSELTEARTERdqfsqesgnldDQLQKLLADLHKREKELsLE 396
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 559 STQVSEQKQRELTNSI------RKLEEELLEIK---GLLEEKREQLKKSKEQE-KALEEEIEALRQEAKRKEKM--AKEH 626
Cdd:pfam15921 397 KEQNKRLWDRDTGNSItidhlrRELDDRNMEVQrleALLKAMKSECQGQMERQmAAIQGKNESLEKVSSLTAQLesTKEM 476
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 627 LRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKdSIMILQTQLDSAIQKEKNCFQNMVSK-EAYEE 705
Cdd:pfam15921 477 LRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLR-SRVDLKLQELQHLKNEGDHLRNVQTEcEALKL 555
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 706 LVRKSGNCQDDLTQALEKLTQATSETkslNRSLQQTQERKAQLEDEIaayeermKKLNMELKKLQGFQQQSEQEVHNFDK 785
Cdd:pfam15921 556 QMAEKDKVIEILRQQIENMTQLVGQH---GRTAGAMQVEKAQLEKEI-------NDRRLELQEFKILKDKKDAKIRELEA 625
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 1907190486 786 KLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESL 829
Cdd:pfam15921 626 RVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNEL 669
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
378-619 |
6.14e-06 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 50.07 E-value: 6.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 378 ERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDT-SLQEARQstskidcEALRAEIQKLKDSlEEAREQLKVSDQNLT 456
Cdd:COG0497 165 RAWRALKKELEELRADEAERARELDLLRFQLEELEAaALQPGEE-------EELEEERRRLSNA-EKLREALQEALEALS 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 457 qskeEAHLSASSLedahrkiencllqdkqkeevIKDLQSQLHKLQKESSKIEEerkhNRQRLQELSSELSEGQRRLSNae 536
Cdd:COG0497 237 ----GGEGGALDL--------------------LGQALRALERLAEYDPSLAE----LAERLESALIELEEAASELRR-- 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 537 kekslLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKL---EEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALR 613
Cdd:COG0497 287 -----YLDSLEFDPERLEEV-------EERLALLRRLARKYgvtVEELLAYAEELRAELAELENSDERLEELEAELAEAE 354
|
....*.
gi 1907190486 614 QEAKRK 619
Cdd:COG0497 355 AELLEA 360
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
508-830 |
8.61e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 50.05 E-value: 8.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 508 EEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNS---IRKLEEELLEI 584
Cdd:TIGR01612 529 DIDQNIKAKLYKEIEAGLKESYELAKNWKKLIHEIKKELEEENEDSIHLEKEIKDLFDKYLEIDDEiiyINKLKLELKEK 608
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 585 KGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELtsrSSHLDSSLNK-YNSSQKVIQ 663
Cdd:TIGR01612 609 IKNISDKNEYIKKAIDLKKIIENNNAYIDELAKISPYQVPEHLKNKDKIYSTIKSEL---SKIYEDDIDAlYNELSSIVK 685
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 664 ELNAEIARQKDSIMILQTQLDsaiqKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSE-TKSLNRSLQQTQ 742
Cdd:TIGR01612 686 ENAIDNTEDKAKLDDLKSKID----KEYDKIQNMETATVELHLSNIENKKNELLDIIVEIKKHIHGEiNKDLNKILEDFK 761
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 743 ERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVhNFDKKLEEMSNQVLQWQRQHqsdLKMLAAKESQLREFQEEM 822
Cdd:TIGR01612 762 NKEKELSNKINDYAKEKDELNKYKSKISEIKNHYNDQI-NIDNIKDEDAKQNYDKSKEY---IKTISIKEDEIFKIINEM 837
|
....*...
gi 1907190486 823 ATLRESLL 830
Cdd:TIGR01612 838 KFMKDDFL 845
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
374-625 |
8.77e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 49.06 E-value: 8.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 374 QDKDERLHELEKNLMQVQNSLREKEAELEKLQcttKELDTSLQEARQSTSKIDceALRAEIQKLKDSLEEAREQLK---- 449
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELN---EEYNELQAELEALQAEID--KLQAEIAEAEAEIEERREELGerar 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 450 -VSDQNLTQSKEEAHLSASSLEDahrkiencllqdkqkeevikdLQSQLHKLQKESSkieeerkHNRQRLQELSSELSEg 528
Cdd:COG3883 94 aLYRSGGSVSYLDVLLGSESFSD---------------------FLDRLSALSKIAD-------ADADLLEELKADKAE- 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 529 qrrlsnAEKEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEE 608
Cdd:COG3883 145 ------LEAKKAELEAKLAELEALKAEL-------EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
250
....*....|....*..
gi 1907190486 609 IEALRQEAKRKEKMAKE 625
Cdd:COG3883 212 AAAAAAAAAAAAAAAAA 228
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
477-783 |
1.52e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.86 E-value: 1.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 477 ENCLLQDKQKEEVIKDLQSQLH-KLQKESSKIE-----EERKHNRQRLQELSSELSEGQRRLSNAEKEKSL--LQKTLDE 548
Cdd:COG3206 107 EDPLGEEASREAAIERLRKNLTvEPVKGSNVIEisytsPDPELAAAVANALAEAYLEQNLELRREEARKALefLEEQLPE 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 549 DEKKIDElfhstqvSEQKQREL--TNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEH 626
Cdd:COG3206 187 LRKELEE-------AEAALEEFrqKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 627 LRklDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARqkdsimiLQTQLDSAIQKEKNCFQNMVSKeayeel 706
Cdd:COG3206 260 LQ--SPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAA-------LRAQLQQEAQRILASLEAELEA------ 324
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907190486 707 vrksgncqddLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLnmeLKKLQGFQQQSEQEVHNF 783
Cdd:COG3206 325 ----------LQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESL---LQRLEEARLAEALTVGNV 388
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
352-604 |
1.53e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.86 E-value: 1.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 352 LQDLQQQYTESQKLSLKkdkllQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEarqstskidcEALR 431
Cdd:COG3206 154 ANALAEAYLEQNLELRR-----EEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEA----------KLLL 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 432 AEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAhrkIENCLLQDKQKEevIKDLQSQLHKLQKESSKIEEER 511
Cdd:COG3206 219 QQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL---LQSPVIQQLRAQ--LAELEAELAELSARYTPNHPDV 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 512 KHNRQRLQELSSEL-SEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLE--EELLEikgLL 588
Cdd:COG3206 294 IALRAQIAALRAQLqQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEvaRELYE---SL 370
|
250
....*....|....*.
gi 1907190486 589 EEKREQLKKSKEQEKA 604
Cdd:COG3206 371 LQRLEEARLAEALTVG 386
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
201-887 |
1.70e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.89 E-value: 1.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 201 VIQEHQETLKRLSEVWQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFAS-YTAT--------HRHPPTSSEDC 271
Cdd:TIGR00606 239 IVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKvFQGTdeqlndlyHNHQRTVREKE 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 272 EDITKILKHLQE-QKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHG--------------LREETSC 336
Cdd:TIGR00606 319 RELVDCQRELEKlNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLeldgfergpfserqIKNFHTL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 337 VIEKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTK---ELDT 413
Cdd:TIGR00606 399 VIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDrilELDQ 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 414 SLQEARQSTSKID----CEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEV 489
Cdd:TIGR00606 479 ELRKAERELSKAEknslTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRH 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 490 IKDLQSQL------HKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFhSTQVS 563
Cdd:TIGR00606 559 SDELTSLLgyfpnkKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVC-GSQDE 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 564 EQKQRELTNSIRKLEEELLEIKG---LLEEKREQLK--------------KSKEQEKALEEEIEALRQEAKRKEKMAKEH 626
Cdd:TIGR00606 638 ESDLERLKEEIEKSSKQRAMLAGataVYSQFITQLTdenqsccpvcqrvfQTEAELQEFISDLQSKLRLAPDKLKSTESE 717
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 627 LRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKEAYEEL 706
Cdd:TIGR00606 718 LKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERF 797
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 707 vrksgncQDDLTQALEKLTQATSETKSLNRSLQQTQERKaqledEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKK 786
Cdd:TIGR00606 798 -------QMELKDVERKIAQQAAKLQGSDLDRTVQQVNQ-----EKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSK 865
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 787 LEEMSNQVLQwqrqhqsdLKMLAAKESQLREFQEEMATLRESL---LADEKEPYSPPAKLTPKEtcrhHRENDQIMNNVE 863
Cdd:TIGR00606 866 TNELKSEKLQ--------IGTNLQRRQQFEEQLVELSTEVQSLireIKDAKEQDSPLETFLEKD----QQEKEELISSKE 933
|
730 740
....*....|....*....|....
gi 1907190486 864 QwakEQKIANEKLgNKLREQVKYI 887
Cdd:TIGR00606 934 T---SNKKAQDKV-NDIKEKVKNI 953
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
343-922 |
1.73e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 1.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 343 KETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQST 422
Cdd:PTZ00121 1077 KDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEI 1156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 423 SKIDCEALRAEIQKLKDS---LEEAREQLKVSDQNLTQSKEEAHL--SASSLEDAHRKIENCLLQDKQKEEVIKDLQsQL 497
Cdd:PTZ00121 1157 ARKAEDARKAEEARKAEDakkAEAARKAEEVRKAEELRKAEDARKaeAARKAEEERKAEEARKAEDAKKAEAVKKAE-EA 1235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 498 HKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLS-NAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRK 576
Cdd:PTZ00121 1236 KKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAiKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAK 1315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 577 LEEELLEIKGLLEEKREQLKKSKEQEKALEE----EIEALRQEAKRKEKMAKEHLRKLDEEKENLQA--ELTSRSSHLDS 650
Cdd:PTZ00121 1316 KADEAKKKAEEAKKKADAAKKKAEEAKKAAEaakaEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAakKKAEEKKKADE 1395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 651 SLNKYNSSQKVIQELN--AEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKEAYE--ELVRKSGNCQDDLTQA--LEKL 724
Cdd:PTZ00121 1396 AKKKAEEDKKKADELKkaAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKkaEEAKKAEEAKKKAEEAkkADEA 1475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 725 TQATSETKSLNRSLQQTQERKAQLEDEIAAYEErmKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMsnqvlqwqRQHQSD 804
Cdd:PTZ00121 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA--KKKADEAKKAEEAKKADEAKKAEEAKKADEA--------KKAEEK 1545
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 805 LKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPAKLTPKETCRHHRENDQIMNNVEQWAKEQKIANEKLGNKLREQV 884
Cdd:PTZ00121 1546 KKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEEL 1625
|
570 580 590
....*....|....*....|....*....|....*...
gi 1907190486 885 KYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEEKKLKA 922
Cdd:PTZ00121 1626 KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKA 1663
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
499-685 |
2.03e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.61 E-value: 2.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 499 KLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKLE 578
Cdd:COG4717 50 RLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEEL-------EAELEELREELEKLE 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 579 --EELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYN 656
Cdd:COG4717 123 klLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELE 202
|
170 180
....*....|....*....|....*....
gi 1907190486 657 SSQKVIQELNAEIARQKDSIMILQTQLDS 685
Cdd:COG4717 203 ELQQRLAELEEELEEAQEELEELEEELEQ 231
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
276-835 |
2.17e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 48.68 E-value: 2.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 276 KILKHLQEQKDSQCLHVEeYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREEtscVIEKKDKETVFLQYRLQDL 355
Cdd:pfam12128 242 EFTKLQQEFNTLESAELR-LSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQ---WKEKRDELNGELSAADAAV 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 356 QQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLqcTTKELD-TSLQEARQSTSKIDCEALRAEI 434
Cdd:pfam12128 318 AKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKAL--TGKHQDvTAKYNRRRSKIKEQNNRDIAGI 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 435 QKLKDSLEEAREQLKVS----------------DQNLTQSKEEAHLSASSLEDAHRKI------ENCLLQDKQKEEVIKD 492
Cdd:pfam12128 396 KDKLAKIREARDRQLAVaeddlqaleselreqlEAGKLEFNEEEYRLKSRLGELKLRLnqatatPELLLQLENFDERIER 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 493 LQSQLHKLQKESSKIEEER------------KHNR--QRLQELSSELSEGQRRLS------------------------- 533
Cdd:pfam12128 476 AREEQEAANAEVERLQSELrqarkrrdqaseALRQasRRLEERQSALDELELQLFpqagtllhflrkeapdweqsigkvi 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 534 -----------------NAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELT-------NSIRKLEEELLEIKGLLE 589
Cdd:pfam12128 556 spellhrtdldpevwdgSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKAEealqsarEKQAAAEEQLVQANGELE 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 590 EKREQLKKSKEQEKALEEEIEAL----RQEAKRKEKMAKEHLRKLDEEKENLQAELTS------------RSSHLDSSLN 653
Cdd:pfam12128 636 KASREETFARTALKNARLDLRRLfdekQSEKDKKNKALAERKDSANERLNSLEAQLKQldkkhqawleeqKEQKREARTE 715
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 654 KYNSSQKVIQELNAEIARQKDSIMILQTQLD---SAIQKEKNcfQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSE 730
Cdd:pfam12128 716 KQAYWQVVEGALDAQLALLKAAIAARRSGAKaelKALETWYK--RDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQE 793
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 731 TKSLNRSLQQTQERKAQledeiaAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEmsnqvlqwQRQHQSDLKMLAA 810
Cdd:pfam12128 794 VLRYFDWYQETWLQRRP------RLATQLSNIERAISELQQQLARLIADTKLRRAKLEM--------ERKASEKQQVRLS 859
|
650 660
....*....|....*....|....*.
gi 1907190486 811 KE-SQLREFQEEMATLRESLLADEKE 835
Cdd:pfam12128 860 ENlRGLRCEMSKLATLKEDANSEQAQ 885
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
392-921 |
2.31e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.43 E-value: 2.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 392 NSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLED 471
Cdd:TIGR00618 161 KSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQ 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 472 AH---RKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELssELSEGQRRLSNAEKEKSLLQKTLDE 548
Cdd:TIGR00618 241 SHaylTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAA--PLAAHIKAVTQIEQQAQRIHTELQS 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 549 DEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQL--KKSKEQEKALEEEIEALRQE---AKRKEKMA 623
Cdd:TIGR00618 319 KMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATsiREISCQQHTLTQHIHTLQQQkttLTQKLQSL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 624 KEHLRKLDEEKENLQAELTSRSS---HLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSK 700
Cdd:TIGR00618 399 CKELDILQREQATIDTRTSAFRDlqgQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTK 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 701 EAYEELVRKSGncqddltQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQgfqqqseQEV 780
Cdd:TIGR00618 479 EQIHLQETRKK-------AVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLE-------TSE 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 781 HNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLR--ESLLADEKEPYSPPAKLTPKETCRHHRENDQI 858
Cdd:TIGR00618 545 EDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQniTVRLQDLTEKLSEAEDMLACEQHALLRKLQPE 624
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907190486 859 MNNVEQWAKEQKIAnEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEEKKLK 921
Cdd:TIGR00618 625 QDLQDVRLHLQQCS-QELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQ 686
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
379-555 |
2.36e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.84 E-value: 2.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 379 RLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTskidcEALRAEIQKLKDSLEEAREQLKVSDQNLTQS 458
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTEL-----EDLEKEIKRLELEIEEVEARIKKYEEQLGNV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 459 KeeahlSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEgqrRLSNAEKE 538
Cdd:COG1579 86 R-----NNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE---ELAELEAE 157
|
170
....*....|....*..
gi 1907190486 539 KSLLQKTLDEDEKKIDE 555
Cdd:COG1579 158 LEELEAEREELAAKIPP 174
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
484-835 |
2.49e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 47.97 E-value: 2.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 484 KQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVS 563
Cdd:pfam07888 48 QAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAH 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 564 EQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKeHLRKLDEEKENLQAELTS 643
Cdd:pfam07888 128 EARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELR-SLSKEFQELRNSLAQRDT 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 644 RSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCfqnmvsKEAYEELVRKSGNCQDDLTQALEK 723
Cdd:pfam07888 207 QVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGL------GEELSSMAAQRDRTQAELHQARLQ 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 724 LTQATSETKSLNRSLQQTQERKAQ----LEDEIAAYEERMKKLNMELKKLQGFQQQseqevhnfdkklEEMSNQVLQWQR 799
Cdd:pfam07888 281 AAQLTLQLADASLALREGRARWAQeretLQQSAEADKDRIEKLSAELQRLEERLQE------------ERMEREKLEVEL 348
|
330 340 350
....*....|....*....|....*....|....*.
gi 1907190486 800 QHQSDLKMLAAKESQlREFQEEMATLResLLADEKE 835
Cdd:pfam07888 349 GREKDCNRVQLSESR-RELQELKASLR--VAQKEKE 381
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
434-645 |
3.15e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 47.70 E-value: 3.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 434 IQKLKDSLEEAREQLKVSDQNL-------TQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKL--QKES 504
Cdd:PHA02562 194 QQQIKTYNKNIEEQRKKNGENIarkqnkyDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIksKIEQ 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 505 SKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvseqkqRELTNSIRKLEEELLEI 584
Cdd:PHA02562 274 FQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDEL-----------EEIMDEFNEQSKKLLEL 342
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907190486 585 KGLLEEKREQLKKSKEQEKALEEEIEALRQE-AKRKEKMAK--EHLRKLDEEKENLQAELTSRS 645
Cdd:PHA02562 343 KNKISTNKQSLITLVDKAKKVKAAIEELQAEfVDNAEELAKlqDELDKIVKTKSELVKEKYHRG 406
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
523-690 |
4.13e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.13 E-value: 4.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 523 SELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKK----- 597
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEraral 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 598 ---------------SK-----------------------EQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQA 639
Cdd:COG3883 96 yrsggsvsyldvllgSEsfsdfldrlsalskiadadadllEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEA 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1907190486 640 ELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKE 690
Cdd:COG3883 176 QQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAA 226
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
202-560 |
4.21e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 4.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 202 IQEHQETLK-RLSEVWQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTATHRHpptssedcEDITKILKH 280
Cdd:TIGR02169 728 LEQEEEKLKeRLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH--------SRIPEIQAE 799
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 281 LQEQKdsqclhvEEYQNLVKDLRmELEAvseqkkkimkdmmkleldlhglreetscVIEKKDKETVFLQYRLQDLQQQYT 360
Cdd:TIGR02169 800 LSKLE-------EEVSRIEARLR-EIEQ----------------------------KLNRLTLEKEYLEKEIQELQEQRI 843
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 361 ESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQstskidcealraEIQKLKDS 440
Cdd:TIGR02169 844 DLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELER------------KIEELEAQ 911
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 441 LEEAREQLKVsdqnLTQSKEEAHLSASSLEDAHRKIEncllQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQE 520
Cdd:TIGR02169 912 IEKKRKRLSE----LKAKLEALEEELSEIEDPKGEDE----EIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEE 983
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1907190486 521 LSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHST 560
Cdd:TIGR02169 984 VLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEA 1023
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
296-635 |
4.67e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.66 E-value: 4.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 296 QNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQD 375
Cdd:pfam02463 652 VSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQ 731
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 376 KDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEIQK------LKDSLEEAREQLK 449
Cdd:pfam02463 732 DKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKeeklkaQEEELRALEEELK 811
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 450 VSDQNLTQS-KEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEG 528
Cdd:pfam02463 812 EEAELLEEEqLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESK 891
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 529 QRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEK----- 603
Cdd:pfam02463 892 EEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLlakee 971
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1907190486 604 -------ALEEEIEALRQEAKRKEKMA------KEHLRKLDEEKE 635
Cdd:pfam02463 972 lgkvnlmAIEEFEEKEERYNKDELEKErleeekKKLIRAIIEETC 1016
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
525-643 |
5.33e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.08 E-value: 5.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 525 LSEGQRRLSNAEKEKSLLQKtlDEDEKKIDELfhstqvsEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKA 604
Cdd:PRK12704 44 LEEAKKEAEAIKKEALLEAK--EEIHKLRNEF-------EKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEK 114
|
90 100 110
....*....|....*....|....*....|....*....
gi 1907190486 605 LEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLqAELTS 643
Cdd:PRK12704 115 KEKELEQKQQELEKKEEELEELIEEQLQELERI-SGLTA 152
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
348-666 |
5.45e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.27 E-value: 5.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 348 LQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDC 427
Cdd:pfam02463 188 LIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 428 EALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKE---- 503
Cdd:pfam02463 268 AQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKElkel 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 504 ----------SSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNS 573
Cdd:pfam02463 348 eikreaeeeeEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKE 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 574 IRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLN 653
Cdd:pfam02463 428 ELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARS 507
|
330
....*....|...
gi 1907190486 654 KYNSSQKVIQELN 666
Cdd:pfam02463 508 GLKVLLALIKDGV 520
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
374-918 |
5.79e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 47.35 E-value: 5.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 374 QDKDERLHELEKNLmqvQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEIQKLK---DSLEEAREQLKV 450
Cdd:TIGR00606 297 QGTDEQLNDLYHNH---QRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRhqeHIRARDSLIQSL 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 451 SDQNLTQSKEEAHLSASSLEDAHR-KIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQ 529
Cdd:TIGR00606 374 ATRLELDGFERGPFSERQIKNFHTlVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQ 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 530 RRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEI 609
Cdd:TIGR00606 454 EELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTT 533
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 610 EALRQEAKRKEKMAKEHLRKLDEEKENlqaELTSR----------SSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMIL 679
Cdd:TIGR00606 534 RTQMEMLTKDKMDKDEQIRKIKSRHSD---ELTSLlgyfpnkkqlEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHI 610
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 680 QTQLDSAIQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQ----------ERKAQLE 749
Cdd:TIGR00606 611 NNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTdenqsccpvcQRVFQTE 690
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 750 DEIaayEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESL 829
Cdd:TIGR00606 691 AEL---QEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDI 767
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 830 LADEKEPYSPPAKLTPKETCRHHRENDQ--IMNNVEQWAKEQKIANEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQE 907
Cdd:TIGR00606 768 EEQETLLGTIMPEEESAKVCLTDVTIMErfQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIEL 847
|
570
....*....|.
gi 1907190486 908 NKKLKNEIEEK 918
Cdd:TIGR00606 848 NRKLIQDQQEQ 858
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
43-683 |
6.22e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.94 E-value: 6.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 43 GLKNEAGERDRDVSNLNSKLLSLQLDIKNLHDVCKRQGKTLQENQLCVEEAMLKANHNKKQAQTLVFTDNQMDFRVNK-- 120
Cdd:TIGR04523 23 GYKNIANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKln 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 121 ------QYHLRQLQQLKKKLLTLQQELEFRTQELQASYCSLLQYQSILEKQTSDLLVLHRHCKlKEDEDPENKGDHPKVR 194
Cdd:TIGR04523 103 sdlskiNSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLK-KQKEELENELNLLEKE 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 195 IYTSPCVIQEHQETLKRLSEVWQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTA----THRHPPTSSED 270
Cdd:TIGR04523 182 KLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTeisnTQTQLNQLKDE 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 271 CEDITKILKHLQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKimkdmmkleldlhGLREETSCVIEKKDKEtvflqy 350
Cdd:TIGR04523 262 QNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQ-------------DWNKELKSELKNQEKK------ 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 351 rLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQcttKELDTSLQEARQSTSKIdcEAL 430
Cdd:TIGR04523 323 -LEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLK---KENQSYKQEIKNLESQI--NDL 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 431 RAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEE 510
Cdd:TIGR04523 397 ESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRS 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 511 RKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKLEEELLEIKGLLEE 590
Cdd:TIGR04523 477 INKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSL-------KEKIEKLESEKKEKESKISDLEDELNK 549
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 591 KREQLKKS--KEQEKALEEEIEALRQE---AKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQEL 665
Cdd:TIGR04523 550 DDFELKKEnlEKEIDEKNKEIEELKQTqksLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKL 629
|
650
....*....|....*...
gi 1907190486 666 NAEIARQKDSIMILQTQL 683
Cdd:TIGR04523 630 SSIIKNIKSKKNKLKQEV 647
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
395-848 |
7.24e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 46.74 E-value: 7.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 395 REKEAELEKLQCTTKELDTSLQEARQSTSKIDCE--ALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDA 472
Cdd:pfam10174 271 EEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESEllALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDAL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 473 HRKIEncllqdkQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNaekekslLQKTLDEDEKK 552
Cdd:pfam10174 351 RLRLE-------EKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIEN-------LQEQLRDKDKQ 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 553 IDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQlKKSKEQEKAleEEIEALRQEAKR-KEKMakEHLRKLD 631
Cdd:pfam10174 417 LAGLKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQ-REREDRERL--EELESLKKENKDlKEKV--SALQPEL 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 632 EEKENLQAELTSRSSHLDSSLNKYNSSQKviqELNAEIARQKDSIMILQTQLDSAIQKEkncfqnmVSKEAYEELVrksg 711
Cdd:pfam10174 492 TEKESSLIDLKEHASSLASSGLKKDSKLK---SLEIAVEQKKEECSKLENQLKKAHNAE-------EAVRTNPEIN---- 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 712 ncqddltqalekltqatsetkslnrslqqtqERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMS 791
Cdd:pfam10174 558 -------------------------------DRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELE 606
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 1907190486 792 NQVLqwqRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPAKLTPKET 848
Cdd:pfam10174 607 SLTL---RQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQLQLEEL 660
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
389-839 |
8.21e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 46.83 E-value: 8.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 389 QVQNSLrEKEAELEKLQCTTKELDTSLQEARQSTSKIDceALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEA------ 462
Cdd:PRK11281 40 DVQAQL-DALNKQKLLEAEDKLVQQDLEQTLALLDKID--RQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNdeetre 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 463 HLSASSLEDAHRKIENCL--LQDKQKEevIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSEL---SEGQRRLSNAEK 537
Cdd:PRK11281 117 TLSTLSLRQLESRLAQTLdqLQNAQND--LAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLkggKVGGKALRPSQR 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 538 EksLLQKTLDEDEKKID----ELFHSTQVSE--QKQRELTNS-IRKLEEELLEIKGLLEEKReqLKKSKEQEKaleeeiE 610
Cdd:PRK11281 195 V--LLQAEQALLNAQNDlqrkSLEGNTQLQDllQKQRDYLTArIQRLEHQLQLLQEAINSKR--LTLSEKTVQ------E 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 611 ALRQEAKrkekmakehlrkldeekenlqaeltsrsshldsslNKYNSSQKVIQELNAeiarqkdsimilQTQLDsaiqke 690
Cdd:PRK11281 265 AQSQDEA-----------------------------------ARIQANPLVAQELEI------------NLQLS------ 291
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 691 kncfqnmvskeayEELVRKsgncqddlTQALEKLTQATSETKSLNRSLQQTQErkaQLEDEIAAyeermkklnmelkkLQ 770
Cdd:PRK11281 292 -------------QRLLKA--------TEKLNTLTQQNLRVKNWLDRLTQSER---NIKEQISV--------------LK 333
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907190486 771 G--------FQQQseQEVHNfDKKLEEMSNQVLQWqRQHQSDLkmlaakeSQLREFQEEMATLRESLLADEKEPYSP 839
Cdd:PRK11281 334 GslllsrilYQQQ--QALPS-ADLIEGLADRIADL-RLEQFEI-------NQQRDALFQPDAYIDKLEAGHKSEVTD 399
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
543-669 |
9.32e-05 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 46.36 E-value: 9.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 543 QKTLDEDEKKIDELFHStqvSEQKQRELTNSIRKLEEELLEikglLEEKREQLKKSKEQekaLEEEIEALRQEAKRK--- 619
Cdd:PRK00409 508 KKLIGEDKEKLNELIAS---LEELERELEQKAEEAEALLKE----AEKLKEELEEKKEK---LQEEEDKLLEEAEKEaqq 577
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 620 -----EKMAKEHLRKLDEEKENLQA-----ELTSRSSHLDSSLNKYNSSQKVIQELNAEI 669
Cdd:PRK00409 578 aikeaKKEADEIIKELRQLQKGGYAsvkahELIEARKRLNKANEKKEKKKKKQKEKQEEL 637
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
342-653 |
1.11e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 46.22 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 342 DKETVFLQY---------RLQDLQQQYTESQKLSLKKDKllqdKDERLHELEKnlmQVQNSLRE----KEAELEKLQCTT 408
Cdd:COG5022 865 KKETIYLQSaqrvelaerQLQELKIDVKSISSLKLVNLE----LESEIIELKK---SLSSDLIEnlefKTELIARLKKLL 937
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 409 KELDTSLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVSDQNLTQS-KEEAHLSASSLEDAHRKIENCLLQDKQKE 487
Cdd:COG5022 938 NNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGnKANSELKNFKKELAELSKQYGALQESTKQ 1017
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 488 evIKDLQSQLHKLQKESSKIEEER--KHNRQRLQELSSELSEGQRRLS------NAEKEKSLLQKTLDEDEKKIDELFHS 559
Cdd:COG5022 1018 --LKELPVEVAELQSASKIISSESteLSILKPLQKLKGLLLLENNQLQarykalKLRRENSLLDDKQLYQLESTENLLKT 1095
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 560 TQVSEQK--QRELTNSIRKLE---------EELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLR 628
Cdd:COG5022 1096 INVKDLEvtNRNLVKPANVLQfivaqmiklNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFA 1175
|
330 340
....*....|....*....|....*
gi 1907190486 629 KLDEEKENLQAELTSRSSHLDSSLN 653
Cdd:COG5022 1176 ALSEKRLYQSALYDEKSKLSSSEVN 1200
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
428-780 |
1.18e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.10 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 428 EALRAEIQKLKDSLEEAREqlkvsDQNLTQSKEEA-------HLSAS----------SLEDAHRKIENCL-------LQD 483
Cdd:PRK04863 789 EQLRAEREELAERYATLSF-----DVQKLQRLHQAfsrfigsHLAVAfeadpeaelrQLNRRRVELERALadhesqeQQQ 863
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 484 KQKEEVIKDLQSQLHKLQKESSKIEEErkHNRQRLQELSSELSEGQ----------RRLSNAEKEKSLLQktldEDEKKI 553
Cdd:PRK04863 864 RSQLEQAKEGLSALNRLLPRLNLLADE--TLADRVEEIREQLDEAEeakrfvqqhgNALAQLEPIVSVLQ----SDPEQF 937
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 554 DELFHSTQVSEQKQRELTNSIRKLEEelleikglLEEKREQLKKSKEQEKALEEE--IEALRQEAKRKEKMakehLRKLD 631
Cdd:PRK04863 938 EQLKQDYQQAQQTQRDAKQQAFALTE--------VVQRRAHFSYEDAAEMLAKNSdlNEKLRQRLEQAEQE----RTRAR 1005
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 632 EEKENLQAELTsrsshldsslnKYNSsqkviqelnaeiarqkdsimiLQTQLDSAIQkekncfqnmvskeAYEELVrksg 711
Cdd:PRK04863 1006 EQLRQAQAQLA-----------QYNQ---------------------VLASLKSSYD-------------AKRQML---- 1036
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907190486 712 ncqDDLTQALEKLT---------QATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQ-GFQQQSEQEV 780
Cdd:PRK04863 1037 ---QELKQELQDLGvpadsgaeeRARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLErDYHEMREQVV 1112
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
212-582 |
1.73e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.40 E-value: 1.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 212 LSEVWQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTATHRhppTSSEDCEDITKILKHLQEQKDSQCLH 291
Cdd:TIGR04523 309 NKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENS---EKQRELEEKQNEIEKLKKENQSYKQE 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 292 VEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREEtscvIEKKDKETVFLQYRLQDLQQQYTESQKLSLKKDK 371
Cdd:TIGR04523 386 IKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE----IERLKETIIKNNSEIKDLTNQDSVKELIIKNLDN 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 372 LLQDKDERLHELEK-------NLMQVQNSLREKEAELEKLQCTTKELDTSLQE--ARQSTSKIDCEALRAEIQKLKDSLE 442
Cdd:TIGR04523 462 TRESLETQLKVLSRsinkikqNLEQKQKELKSKEKELKKLNEEKKELEEKVKDltKKISSLKEKIEKLESEKKEKESKIS 541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 443 EAREQLKVSDQNLTQSK------------EEAHLSASSLEDAHRKIENCLlqdKQKEEVIKDLQSQLHKLQKESSKIEEE 510
Cdd:TIGR04523 542 DLEDELNKDDFELKKENlekeideknkeiEELKQTQKSLKKKQEEKQELI---DQKEKEKKDLIKEIEEKEKKISSLEKE 618
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907190486 511 RKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELL 582
Cdd:TIGR04523 619 LEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKELS 690
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
378-687 |
1.93e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.71 E-value: 1.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 378 ERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQStskIDCEALRA-EIQKLKDSLEEAREQLKVSDQNLT 456
Cdd:COG3096 361 ERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQA---LDVQQTRAiQYQQAVQALEKARALCGLPDLTPE 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 457 QSKEEAHLSASSLEDAHRKiencLLQDKQKEEVIKDLQSQLHK----LQKESSKIEEERKHNR---------------QR 517
Cdd:COG3096 438 NAEDYLAAFRAKEQQATEE----VLELEQKLSVADAARRQFEKayelVCKIAGEVERSQAWQTarellrryrsqqalaQR 513
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 518 LQELSSELSEGQRRLSNAEKEKSLLQktldedekkidelfhstQVSEQKQRELTNSIrKLEEELLEIKGLLEEKREQLKK 597
Cdd:COG3096 514 LQQLRAQLAELEQRLRQQQNAERLLE-----------------EFCQRIGQQLDAAE-ELEELLAELEAQLEELEEQAAE 575
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 598 SKEQEKALEEEIEALRQEAKRKEKMAKEhLRKLDEEKENLQAELtsrSSHLDSSLNKYNSSQKVIQELNaEIARQKDSIM 677
Cdd:COG3096 576 AVEQRSELRQQLEQLRARIKELAARAPA-WLAAQDALERLREQS---GEALADSQEVTAAMQQLLERER-EATVERDELA 650
|
330
....*....|
gi 1907190486 678 ILQTQLDSAI 687
Cdd:COG3096 651 ARKQALESQI 660
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
375-779 |
2.18e-04 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 45.05 E-value: 2.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 375 DKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEAR--------QSTSKIDCEALRAEIQKLKDSLEEARE 446
Cdd:pfam13166 93 EIQEKIAKLKKEIKDHEEKLDAAEANLQKLDKEKEKLEADFLDECwkkikrkkNSALSEALNGFKYEANFKSRLLREIEK 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 447 QLKVSDQNLTQSKEEAhLSASSLEDAHRKIENCLLQDKQKEEVIKD--LQSqlhKLQKESSKIEEERKHNrqrlqELSSE 524
Cdd:pfam13166 173 DNFNAGVLLSDEDRKA-ALATVFSDNKPEIAPLTFNVIDFDALEKAeiLIQ---KVIGKSSAIEELIKNP-----DLADW 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 525 LSEGQRRLSNAEKEKSLLQKTLDEDEKK-IDELFhstqvseqkQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEK 603
Cdd:pfam13166 244 VEQGLELHKAHLDTCPFCGQPLPAERKAaLEAHF---------DDEFTEFQNRLQKLIEKVESAISSLLAQLPAVSDLAS 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 604 ---ALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLqaeltSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSImilq 680
Cdd:pfam13166 315 llsAFELDVEDIESEAEVLNSQLDGLRRALEAKRKDP-----FKSIELDSVDAKIESINDLVASINELIAKHNEIT---- 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 681 TQLDSAIQKEKNCFQNMVSKEAYEELVrksgNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMK 760
Cdd:pfam13166 386 DNFEEEKNKAKKKLRLHLVEEFKSEID----EYKDKYAGLEKAINSLEKEIKNLEAEIKKLREEIKELEAQLRDHKPGAD 461
|
410 420
....*....|....*....|.
gi 1907190486 761 KLNMELKK--LQGFQQQSEQE 779
Cdd:pfam13166 462 EINKLLKAfgFGELELSFNEE 482
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
298-601 |
2.71e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.04 E-value: 2.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 298 LVKDLRMELEAVSEQKKKIMKDMMKLELDlhglREETSCVIEKKDKetvflQYRLQDLQQQYTESQKLSLKKDKLLQDKD 377
Cdd:TIGR00606 793 IMERFQMELKDVERKIAQQAAKLQGSDLD----RTVQQVNQEKQEK-----QHELDTVVSKIELNRKLIQDQQEQIQHLK 863
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 378 ERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKI--DCEALRAEIQKLKDSLEEAREQLKVSDQNL 455
Cdd:TIGR00606 864 SKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDspLETFLEKDQQEKEELISSKETSNKKAQDKV 943
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 456 TQSKEEAHLSASSLEDAHRKI-ENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSN 534
Cdd:TIGR00606 944 NDIKEKVKNIHGYMKDIENKIqDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTL 1023
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907190486 535 AEKEKSLlqKTLDEDEKKIDELFHSTQVSEQKQ--RELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQ 601
Cdd:TIGR00606 1024 RKRENEL--KEVEEELKQHLKEMGQMQVLQMKQehQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKE 1090
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
499-827 |
2.92e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.95 E-value: 2.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 499 KLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSnaekeksllqkTLDEDEKKIDELFHSTQVSEQKQRELT---NSIR 575
Cdd:PRK04863 290 ELRRELYTSRRQLAAEQYRLVEMARELAELNEAES-----------DLEQDYQAASDHLNLVQTALRQQEKIEryqADLE 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 576 KLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALR--------------------QEAKRKEKMAKE-------HLR 628
Cdd:PRK04863 359 ELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKsqladyqqaldvqqtraiqyQQAVQALERAKQlcglpdlTAD 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 629 KLDEEKENLQAELTSRSSHLDSSLNKYNSSQkviqelnaEIARQKDSIMILQTQLDSAIQKE--KNCFQNMVskEAYEEL 706
Cdd:PRK04863 439 NAEDWLEEFQAKEQEATEELLSLEQKLSVAQ--------AAHSQFEQAYQLVRKIAGEVSRSeaWDVARELL--RRLREQ 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 707 VRKSGNCQdDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQgfQQQSEqevhnfdkk 786
Cdd:PRK04863 509 RHLAEQLQ-QLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLS--ESVSE--------- 576
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1907190486 787 LEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRE 827
Cdd:PRK04863 577 ARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLRE 617
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
469-921 |
3.01e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.63 E-value: 3.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 469 LEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDE 548
Cdd:TIGR04523 49 LKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNK 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 549 DEKKIDElfhstqvSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAK--RKEKMAKEH 626
Cdd:TIGR04523 129 LEKQKKE-------NKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDkiKNKLLKLEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 627 LRKLDEEKENLQAELTSRSSHLDsslNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKEA-YEE 705
Cdd:TIGR04523 202 LLSNLKKKIQKNKSLESQISELK---KQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKeLEQ 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 706 LVRKSGNCQDDLTQALEKLTQATSE-----TKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEV 780
Cdd:TIGR04523 279 NNKKIKELEKQLNQLKSEISDLNNQkeqdwNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESEN 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 781 HNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLrefqeematlreslladekepysppakltpketcrhhrendqimN 860
Cdd:TIGR04523 359 SEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQI--------------------------------------------N 394
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907190486 861 NVEQWAKEQKIANEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEEKKLK 921
Cdd:TIGR04523 395 DLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELI 455
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
338-538 |
3.19e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.05 E-value: 3.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 338 IEKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQE 417
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 418 ARQSTSKID--------------CEALRAEI---QKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENcl 480
Cdd:COG3883 98 SGGSVSYLDvllgsesfsdfldrLSALSKIAdadADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEA-- 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1907190486 481 lQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKE 538
Cdd:COG3883 176 -QQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAA 232
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
523-640 |
3.22e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 44.69 E-value: 3.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 523 SELSEGQRRLSNAEKEKSLLQKTLDEDEKKidelfhstqvseqkqreltnSIRKLEEELLEikglLEEKREQLKKSKEQE 602
Cdd:COG0542 411 EELDELERRLEQLEIEKEALKKEQDEASFE--------------------RLAELRDELAE----LEEELEALKARWEAE 466
|
90 100 110
....*....|....*....|....*....|....*...
gi 1907190486 603 KALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAE 640
Cdd:COG0542 467 KELIEEIQELKEELEQRYGKIPELEKELAELEEELAEL 504
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
700-835 |
3.83e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 3.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 700 KEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQ----- 774
Cdd:COG4717 52 EKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQllply 131
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907190486 775 ----QSEQEVHNFDKKLEEMSNQVLQWQRQHQSdlkmLAAKESQLREFQEEMATLRESLLADEKE 835
Cdd:COG4717 132 qeleALEAELAELPERLEELEERLEELRELEEE----LEELEAELAELQEELEELLEQLSLATEE 192
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
206-817 |
4.00e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.40 E-value: 4.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 206 QETLKRLSEVWQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYtathrhpptsSEDCEDITKILKHLQEQK 285
Cdd:pfam01576 415 QELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSL----------ESQLQDTQELLQEETRQK 484
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 286 DSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLR---EETSCVIEKKDKETVFLQYRLQDLQQQYTES 362
Cdd:pfam01576 485 LNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKkklEEDAGTLEALEEGKKRLQRELEALTQQLEEK 564
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 363 QKLSLKKDKLLqdkdERLHELEKNLMQVQNSLREKEAELEKLQcttKELDTSLQEARQSTSKIDCEALRAE--------- 433
Cdd:pfam01576 565 AAAYDKLEKTK----NRLQQELDDLLVDLDHQRQLVSNLEKKQ---KKFDQMLAEEKAISARYAEERDRAEaeareketr 637
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 434 ----------IQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIencllqdkqkEEVIKDLQSQLHKLQKE 503
Cdd:pfam01576 638 alslaraleeALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRAL----------EQQVEEMKTQLEELEDE 707
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 504 SSKIEEERKHNRQRLQELSSELS-EGQRRLSNAEKEKSLLQKTLDEDEKKIDElfhstqvsEQKQRELTNSIRK-LEEEL 581
Cdd:pfam01576 708 LQATEDAKLRLEVNMQALKAQFErDLQARDEQGEEKRRQLVKQVRELEAELED--------ERKQRAQAVAAKKkLELDL 779
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 582 LEIKGLL-------EEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLdeekENLQAELTSRSSHLDSSLNK 654
Cdd:pfam01576 780 KELEAQIdaankgrEEAVKQLKKLQAQMKDLQRELEEARASRDEILAQSKESEKKL----KNLEAELLQLQEDLAASERA 855
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 655 YNSSQKVIQELNAEIARQKDSimilqtqlDSAIQKEKNCFQNMVSkEAYEELVRKSGNCQddltQALEKLTQATSETKSL 734
Cdd:pfam01576 856 RRQAQQERDELADEIASGASG--------KSALQDEKRRLEARIA-QLEEELEEEQSNTE----LLNDRLRKSTLQVEQL 922
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 735 NRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQG-FQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKES 813
Cdd:pfam01576 923 TTELAAERSTSQKSESARQQLERQNKELKAKLQEMEGtVKSKFKSSIAALEAKIAQLEEQLEQESRERQAANKLVRRTEK 1002
|
....
gi 1907190486 814 QLRE 817
Cdd:pfam01576 1003 KLKE 1006
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
402-675 |
4.18e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 43.74 E-value: 4.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 402 EKLQCTTKELDTSLQEARQSTSKIdcEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLL 481
Cdd:COG4372 31 EQLRKALFELDKLQEELEQLREEL--EQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 482 QDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQ 561
Cdd:COG4372 109 EAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDEL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 562 VSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAEL 641
Cdd:COG4372 189 LKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAIL 268
|
250 260 270
....*....|....*....|....*....|....
gi 1907190486 642 TSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDS 675
Cdd:COG4372 269 VEKDTEEEELEIAALELEALEEAALELKLLALLL 302
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
207-633 |
4.32e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 4.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 207 ETLKRLSEVWQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTATHRHPPTSSEDcEDITKILKHLQEQKD 286
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQEL-EALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 287 SQCLHVEEYQNLVKDLRMELEAVSEqkkkimkdmmkLELDLHGLREETSCVIEKKDKEtvfLQYRLQDLQQQYTESQKLS 366
Cdd:COG4717 150 ELEERLEELRELEEELEELEAELAE-----------LQEELEELLEQLSLATEEELQD---LAEELEELQQRLAELEEEL 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 367 LKKDKLLQDKDERLHELEKNLM--QVQNSLREKE---------AELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEIQ 435
Cdd:COG4717 216 EEAQEELEELEEELEQLENELEaaALEERLKEARlllliaaalLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAR 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 436 KLKDSLEEARE-QLKVSDQNLTQSKEEAHLSASSLEDAHRKIEncLLQDKQKEEVIKDLQSQLHKLQKESsKIEEERKHN 514
Cdd:COG4717 296 EKASLGKEAEElQALPALEELEEEELEELLAALGLPPDLSPEE--LLELLDRIEELQELLREAEELEEEL-QLEELEQEI 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 515 RQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFhstqvSEQKQRELTNSIRKLEEELLEIKGLLEEKREQ 594
Cdd:COG4717 373 AALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELL-----GELEELLEALDEEELEEELEELEEELEELEEE 447
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 1907190486 595 LKKSKEQEKALEEEIEALR-----QEAKRKEKMAKEHLRKLDEE 633
Cdd:COG4717 448 LEELREELAELEAELEQLEedgelAELLQELEELKAELRELAEE 491
|
|
| PRK00106 |
PRK00106 |
ribonuclease Y; |
436-627 |
4.68e-04 |
|
ribonuclease Y;
Pssm-ID: 178867 [Multi-domain] Cd Length: 535 Bit Score: 44.09 E-value: 4.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 436 KLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSL-EDAHRKiencllQDKQKEEVIKDLQSQLHKLQKEsskIEEERKHN 514
Cdd:PRK00106 25 KMKSAKEAAELTLLNAEQEAVNLRGKAERDAEHIkKTAKRE------SKALKKELLLEAKEEARKYREE---IEQEFKSE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 515 RQRLQELSSELSEGQRRLsnaekeksllqktldedEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQ 594
Cdd:PRK00106 96 RQELKQIESRLTERATSL-----------------DRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAE 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1907190486 595 LKKS-------------KEQEKALEEEI-----EALRQEAKRKEKMAKEHL 627
Cdd:PRK00106 159 LERVaalsqaeareiilAETENKLTHEIatrirEAEREVKDRSDKMAKDLL 209
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
428-917 |
5.25e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.06 E-value: 5.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 428 EALRAEIQKLKDSLEEAREQLKVSDQNLTQskeeahlsassledahrkiencllqdkqkeevikdLQSQLHKLQKESSKI 507
Cdd:pfam12128 600 EELRERLDKAEEALQSAREKQAAAEEQLVQ-----------------------------------ANGELEKASREETFA 644
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 508 EEERKHNRQRLQELSSELSEGQRRLSNA-EKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQREltnsirkleeelleikG 586
Cdd:pfam12128 645 RTALKNARLDLRRLFDEKQSEKDKKNKAlAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKE----------------Q 708
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 587 LLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENlqaeltsrsshldsSLNKYNSSQKVIQELN 666
Cdd:pfam12128 709 KREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWYKR--------------DLASLGVDPDVIAKLK 774
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 667 AEIArqkdsimilqtqldSAIQKEKNCFQNMVSKEAYEELVRKSGNCQDD-LTQALEKLTQATSETK-SLNRSLQQTQER 744
Cdd:pfam12128 775 REIR--------------TLERKIERIAVRRQEVLRYFDWYQETWLQRRPrLATQLSNIERAISELQqQLARLIADTKLR 840
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 745 KAQLEDEIAAYEERMKKLNMELKKLQGFQQ-----QSEQEVHNFDKKLEEMSNQVLQWQRQHQSdlkMLAAKESQLREFQ 819
Cdd:pfam12128 841 RAKLEMERKASEKQQVRLSENLRGLRCEMSklatlKEDANSEQAQGSIGERLAQLEDLKLKRDY---LSESVKKYVEHFK 917
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 820 EEMATLRESLLADEKEPYSPPAKLTPKETCRHHRENdQIMNNVEQWAK---EQKIaneklgNKLREQVKYIAK-LTGEKD 895
Cdd:pfam12128 918 NVIADHSGSGLAETWESLREEDHYQNDKGIRLLDYR-KLVPYLEQWFDvrvPQSI------MVLREQVSILGVdLTEFYD 990
|
490 500
....*....|....*....|..
gi 1907190486 896 HLHNVMVHLQQENKKLKNEIEE 917
Cdd:pfam12128 991 VLADFDRRIASFSRELQREVGE 1012
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
480-638 |
5.33e-04 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 43.84 E-value: 5.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 480 LLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHS 559
Cdd:pfam05262 177 ISDKKVVEALREDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 560 TQVSEQKQReltNSIRKLEEELLEIKGLLEEKREQ--LKKSKEQEKALEEEIEALRQEAKRKEKMAK----EHLRKLDEE 633
Cdd:pfam05262 257 AKNLPKPAD---TSSPKEDKQVAENQKREIEKAQIeiKKNDEEALKAKDHKAFDLKQESKASEKEAEdkelEAQKKREPV 333
|
....*
gi 1907190486 634 KENLQ 638
Cdd:pfam05262 334 AEDLQ 338
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
488-802 |
5.52e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 43.35 E-value: 5.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 488 EVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDElfhstqvSEQKQ 567
Cdd:COG4372 24 ILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQA-------AQAEL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 568 RELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSH 647
Cdd:COG4372 97 AQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQAL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 648 LDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQA 727
Cdd:COG4372 177 SEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVI 256
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907190486 728 TSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQ 802
Cdd:COG4372 257 LKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELA 331
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
430-598 |
5.54e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 5.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 430 LRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEahlsassLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKL--QKESSKI 507
Cdd:COG1579 22 LEHRLKELPAELAELEDELAALEARLEAAKTE-------LEDLEKEIKRLELEIEEVEARIKKYEEQLGNVrnNKEYEAL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 508 EEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDElfhstqvseqKQRELTNSIRKLEEELLEikgl 587
Cdd:COG1579 95 QKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEE----------KKAELDEELAELEAELEE---- 160
|
170
....*....|.
gi 1907190486 588 LEEKREQLKKS 598
Cdd:COG1579 161 LEAEREELAAK 171
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
576-709 |
6.37e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.61 E-value: 6.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 576 KLEEELLEIKGLLEE-KREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLdeEKENLQAEltsrsSHLDSSLNK 654
Cdd:PRK12704 32 KIKEAEEEAKRILEEaKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKL--EKRLLQKE-----ENLDRKLEL 104
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1907190486 655 YNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQ---NMVSKEAYEELVRK 709
Cdd:PRK12704 105 LEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELErisGLTAEEAKEILLEK 162
|
|
| Caldesmon |
pfam02029 |
Caldesmon; |
508-846 |
6.48e-04 |
|
Caldesmon;
Pssm-ID: 460421 [Multi-domain] Cd Length: 495 Bit Score: 43.32 E-value: 6.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 508 EEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTldedekkiDELFHSTQVSEQKQRELTNSIRKLEEELLEikgl 587
Cdd:pfam02029 10 ERRRRAREERRRQKEEEEPSGQVTESVEPNEHNSYEED--------SELKPSGQGGLDEEEAFLDRTAKREERRQK---- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 588 leEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHL---RKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQE 664
Cdd:pfam02029 78 --RLQEALERQKEFDPTIADEKESVAERKENNEEEENSSWekeEKRDSRLGRYKEEETEIREKEYQENKWSTEVRQAEEE 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 665 LNAEIARQKDSIMI-LQTQLDSAIQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQE 743
Cdd:pfam02029 156 GEEEEDKSEEAEEVpTENFAKEEVKDEKIKKEKKVKYESKVFLDQKRGHPEVKSQNGEEEVTKLKVTTKRRQGGLSQSQE 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 744 RK----AQLEDEIAAYEERMK---KLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQV-LQWQRQHQSDLKMLAAKESQL 815
Cdd:pfam02029 236 REeeaeVFLEAEQKLEELRRRrqeKESEEFEKLRQKQQEAELELEELKKKREERRKLLeEEEQRRKQEEAERKLREEEEK 315
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1907190486 816 REFQEEMATLR-----------ESLLADEKEPYSPpakLTPK 846
Cdd:pfam02029 316 RRMKEEIERRRaeaaekrqklpEDSSSEGKKPFKC---FSPK 354
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
482-607 |
7.37e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 43.66 E-value: 7.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 482 QDKQK-EEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRR----LSNAEKEkslLQKTLDEDEKKIDEL 556
Cdd:PRK00409 513 EDKEKlNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEedklLEEAEKE---AQQAIKEAKKEADEI 589
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1907190486 557 FHSTQVSEQKQRELTNSiRKLEEELLEIKGLLEEKREQLKKSKEQEKALEE 607
Cdd:PRK00409 590 IKELRQLQKGGYASVKA-HELIEARKRLNKANEKKEKKKKKQKEKQEELKV 639
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
442-784 |
7.42e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 43.41 E-value: 7.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 442 EEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQD-KQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRlQE 520
Cdd:COG5185 228 IINIEEALKGFQDPESELEDLAQTSDKLEKLVEQNTDLRLEKlGENAESSKRLNENANNLIKQFENTKEKIAEYTKS-ID 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 521 LSSELSEGQRRLSNAEKEKSLLQKTLdEDEKKIDELFHSTqvsEQKQRELTNSIRKLEEELLEIKGL--LEEKREQLKKS 598
Cdd:COG5185 307 IKKATESLEEQLAAAEAEQELEESKR-ETETGIQNLTAEI---EQGQESLTENLEAIKEEIENIVGEveLSKSSEELDSF 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 599 KEQEKALEEEIEALRQEAKRKEKMAKEHLRK----LDEEKENLQAELtsrsshlDSSLNKYNSSQKVIQELNAEIARQKD 674
Cdd:COG5185 383 KDTIESTKESLDEIPQNQRGYAQEILATLEDtlkaADRQIEELQRQI-------EQATSSNEEVSKLLNELISELNKVMR 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 675 SIMilqtqldsaiqkekncfqnmvskeayeelvrksGNCQDDLTQALEKLTQATSETK-SLNRSLQQTQERKAQLEDEIA 753
Cdd:COG5185 456 EAD---------------------------------EESQSRLEEAYDEINRSVRSKKeDLNEELTQIESRVSTLKATLE 502
|
330 340 350
....*....|....*....|....*....|.
gi 1907190486 754 AYEERMKklnmelKKLQGFQQQSEQEVHNFD 784
Cdd:COG5185 503 KLRAKLE------RQLEGVRSKLDQVAESLK 527
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
378-752 |
7.87e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 7.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 378 ERLHELEKNLMQVQNSLREKEA-------ELEKLQCTTKELDTSLQEAR----------QSTSKIdcEALRAEIQKLKDS 440
Cdd:COG3096 285 ERALELRRELFGARRQLAEEQYrlvemarELEELSARESDLEQDYQAASdhlnlvqtalRQQEKI--ERYQEDLEELTER 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 441 LEEAREQLKVSDQNLTQSKEEAHLS-------ASSLEDAHRKIE---NCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEE 510
Cdd:COG3096 363 LEEQEEVVEEAAEQLAEAEARLEAAeeevdslKSQLADYQQALDvqqTRAIQYQQAVQALEKARALCGLPDLTPENAEDY 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 511 RKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhSTQVSEQKQRELTN---SIRKLEEELLEIKGL 587
Cdd:COG3096 443 LAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKIAGEV--ERSQAWQTARELLRryrSQQALAQRLQQLRAQ 520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 588 LEEKREQLkkskEQEKALEEEIEALRQEAKRKEKMAKEhlrkLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNA 667
Cdd:COG3096 521 LAELEQRL----RQQQNAERLLEEFCQRIGQQLDAAEE----LEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRA 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 668 EIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKEAyeelvrksgnCQDDLTQALEKLTQATSETkslnrslQQTQERKAQ 747
Cdd:COG3096 593 RIKELAARAPAWLAAQDALERLREQSGEALADSQE----------VTAAMQQLLEREREATVER-------DELAARKQA 655
|
....*
gi 1907190486 748 LEDEI 752
Cdd:COG3096 656 LESQI 660
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
202-672 |
7.91e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.39 E-value: 7.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 202 IQEHQETLKRLSEvwqKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTATHRhppTSSEDCEDITKILKHL 281
Cdd:COG1196 332 LEELEEELEELEE---ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL---EALRAAAELAAQLEEL 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 282 QEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREEtscvIEKKDKETVFLQYRLQDLQQQYTE 361
Cdd:COG1196 406 EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE----EEALLELLAELLEEAALLEAALAE 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 362 SQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEA---------ELEKLQCTTKELDTSLQEARQSTSKIDCEALRA 432
Cdd:COG1196 482 LLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLrglagavavLIGVEAAYEAALEAALAAALQNIVVEDDEVAAA 561
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 433 EIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAH---------------------------RKIENCLLQDKQ 485
Cdd:COG1196 562 AIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDlvasdlreadaryyvlgdtllgrtlvaARLEAALRRAVT 641
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 486 KEEVIKDLQSQLHKLQKESSKIEEERKHN----RQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQ 561
Cdd:COG1196 642 LAGRLREVTLEGEGGSAGGSLTGGSRRELlaalLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEEL 721
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 562 VSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEK---MAKEHLRKLDEEKENLQ 638
Cdd:COG1196 722 EEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPvnlLAIEEYEELEERYDFLS 801
|
490 500 510
....*....|....*....|....*....|....
gi 1907190486 639 AELTSrsshLDSSLNKYnssQKVIQELNAEIARQ 672
Cdd:COG1196 802 EQRED----LEEARETL---EEAIEEIDRETRER 828
|
|
| FapA |
pfam03961 |
Flagellar Assembly Protein A beta solenoid domain; This entry represents the C-terminal beta ... |
565-647 |
8.01e-04 |
|
Flagellar Assembly Protein A beta solenoid domain; This entry represents the C-terminal beta solenoid domain of FapA and its homologs. Members of this family include FapA (flagellar assembly protein A) found in Vibrio vulnificus. The synthesis of flagella allows bacteria to respond to chemotaxis by facilitating motility. Studies examining the role of FapA show that the loss or delocalization of FapA results in a complete failure of the flagellar biosynthesis and motility in response to glucose mediated chemotaxis. The polar localization of FapA is required for flagellar synthesis, and dephosphorylated EIIAGlc (Glucose-permease IIA component) inhibited the polar localization of FapA through direct interaction. This entry shows similarity to pfam03775 suggesting a similar functional role.
Pssm-ID: 461111 [Multi-domain] Cd Length: 272 Bit Score: 42.29 E-value: 8.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 565 QKQRELTNSIRKLEEELLEIKGLLEekreqlKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSR 644
Cdd:pfam03961 156 EKLEELEKELEELEEELEKLKKRLK------KLPKKARGQLPPEKREQLEKLLETKNKLSEELEELEEELKELKEELESL 229
|
...
gi 1907190486 645 SSH 647
Cdd:pfam03961 230 LGE 232
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
559-835 |
8.29e-04 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 42.59 E-value: 8.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 559 STQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQ 638
Cdd:COG1340 2 KTDELSSSLEELEEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEERD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 639 aELTSRSSHLDSSLNKYNSSQKVIQELNAEIArqkdsimilqtQLDSAIQKEKNCFQNMV-SKEAYEELVRKSgncqDDL 717
Cdd:COG1340 82 -ELNEKLNELREELDELRKELAELNKAGGSID-----------KLRKEIERLEWRQQTEVlSPEEEKELVEKI----KEL 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 718 TQALEKLTQATSETKSLNRSLQQTQERKAQLEDeiaaYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQW 797
Cdd:COG1340 146 EKELEKAKKALEKNEKLKELRAELKELRKEAEE----IHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEA 221
|
250 260 270
....*....|....*....|....*....|....*...
gi 1907190486 798 QRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKE 835
Cdd:COG1340 222 QEKADELHEEIIELQKELRELRKELKKLRKKQRALKRE 259
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
531-919 |
8.94e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 8.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 531 RLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIE 610
Cdd:TIGR04523 34 EEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIK 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 611 ALRQEAKRKE---KMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAI 687
Cdd:TIGR04523 114 NDKEQKNKLEvelNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIK 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 688 QKEKNCFQNMVSKEAYEELVRKsgncqddltqALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELK 767
Cdd:TIGR04523 194 NKLLKLELLLSNLKKKIQKNKS----------LESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQN 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 768 KLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQ-----HQSDLKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPAK 842
Cdd:TIGR04523 264 KIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEisdlnNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQ 343
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907190486 843 LTPKETCRHHRENDQIMNNVEQWAKEQKIanEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEEKK 919
Cdd:TIGR04523 344 ISQLKKELTNSESENSEKQRELEEKQNEI--EKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQ 418
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
485-673 |
1.04e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.80 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 485 QKEEVIKDLQSQLHKLQKEsskiEEERKHNRQRLQELSSELSEGQR--RLSNAEKEKSLLQKTLDEDEKKIDELFHSTQV 562
Cdd:pfam17380 338 EQERMAMERERELERIRQE----ERKRELERIRQEEIAMEISRMREleRLQMERQQKNERVRQELEAARKVKILEEERQR 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 563 SEQKQRELTNSIRKLEEEL--LEIKGLLEEKREQLKKSKEQEKALEEEIEALRQ-EAKRKEK---MAKEHLRKLDEEKEN 636
Cdd:pfam17380 414 KIQQQKVEMEQIRAEQEEArqREVRRLEEERAREMERVRLEEQERQQQVERLRQqEEERKRKkleLEKEKRDRKRAEEQR 493
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1907190486 637 ---LQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQK 673
Cdd:pfam17380 494 rkiLEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEE 533
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
42-760 |
1.04e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.11 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 42 KGLKNEAGERDRDVSNLNSKLLSLQLDIKNLHDVCKRQGKTLQENQLCVEEAMLKANHNKKQAQTLvftDNQMDFRVNKQ 121
Cdd:TIGR00606 401 ERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQL---EGSSDRILELD 477
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 122 YHLRqlqqlkkklltlQQELEFRTQELQASYCSLLQYQSILEKQTSDLLvlhrHCKLKEDEDPENKGDHPKVRIYTSPCV 201
Cdd:TIGR00606 478 QELR------------KAERELSKAEKNSLTETLKKEVKSLQNEKADLD----RKLRKLDQEMEQLNHHTTTRTQMEMLT 541
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 202 IQEHQETLKRLSEVWQKVSEQDDLIQELRNKLACSNSLVLER------EEALIKLQAEFASYTATHRHpptSSEDCEDIT 275
Cdd:TIGR00606 542 KDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSkeinqtRDRLAKLNKELASLEQNKNH---INNELESKE 618
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 276 KILKHLQEQKDSQClHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETS--CVIEKKDKET-VFLQYRL 352
Cdd:TIGR00606 619 EQLSSYEDKLFDVC-GSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQscCPVCQRVFQTeAELQEFI 697
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 353 QDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEarqstskidceaLRA 432
Cdd:TIGR00606 698 SDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQR------------LKN 765
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 433 EIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSaSSLEDAHRKIENCLLQ------DKQKEEVIKDLQSQLHKLQKESSK 506
Cdd:TIGR00606 766 DIEEQETLLGTIMPEEESAKVCLTDVTIMERFQ-MELKDVERKIAQQAAKlqgsdlDRTVQQVNQEKQEKQHELDTVVSK 844
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 507 IE------EERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFhsTQVSEQKQRELTNSIRKleee 580
Cdd:TIGR00606 845 IElnrkliQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLI--REIKDAKEQDSPLETFL---- 918
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 581 lleiKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQK 660
Cdd:TIGR00606 919 ----EKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQE 994
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 661 VIQE----LNAEIARQKDSIMILQTQLDSAIQKEKncfqnmvSKEAYEELVRKSGNC-QDDLTQALEKLTQATSETKSLN 735
Cdd:TIGR00606 995 KINEdmrlMRQDIDTQKIQERWLQDNLTLRKRENE-------LKEVEEELKQHLKEMgQMQVLQMKQEHQKLEENIDLIK 1067
|
730 740
....*....|....*....|....*
gi 1907190486 736 RSLQQTQERKAQLEDEIAAYEERMK 760
Cdd:TIGR00606 1068 RNHVLALGRQKGYEKEIKHFKKELR 1092
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
483-630 |
1.11e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 42.77 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 483 DKQKEEVIKDLQSQLHKLQKESSK-IEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEkkiDELFHSTQ 561
Cdd:PRK12705 36 ERILQEAQKEAEEKLEAALLEAKElLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLE---NQLEEREK 112
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 562 VSEQKQRELTNSIRKLEEELLEIKGLL-EEKREQLKKSKEQEkaLEEEIEalrQEAKRKEKMAKEHLRKL 630
Cdd:PRK12705 113 ALSARELELEELEKQLDNELYRVAGLTpEQARKLLLKLLDAE--LEEEKA---QRVKKIEEEADLEAERK 177
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
483-829 |
1.16e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 42.64 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 483 DKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQV 562
Cdd:COG5185 168 LTQELNQNLKKLEIFGLTLGLLKGISELKKAEPSGTVNSIKESETGNLGSESTLLEKAKEIINIEEALKGFQDPESELED 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 563 SEQKQRELTNSIRKLEEELLEIkglLEEKREQLKKSKEQEKALEEEIEALRQEAKrkEKMAKEHLRKLDEEKENLQAELT 642
Cdd:COG5185 248 LAQTSDKLEKLVEQNTDLRLEK---LGENAESSKRLNENANNLIKQFENTKEKIA--EYTKSIDIKKATESLEEQLAAAE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 643 SRSSHLDSSLnkynssqkviqELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALE 722
Cdd:COG5185 323 AEQELEESKR-----------ETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVELSKSSEELDSFKDTIESTKE 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 723 KLTQATSETKslnrslQQTQERKAQLEDEIAAYEERMKKLNMELKKL-------QGFQQQSEQEVHNFDKKLEEMSNQVL 795
Cdd:COG5185 392 SLDEIPQNQR------GYAQEILATLEDTLKAADRQIEELQRQIEQAtssneevSKLLNELISELNKVMREADEESQSRL 465
|
330 340 350
....*....|....*....|....*....|....*.
gi 1907190486 796 QWQRQH--QSDLKMLAAKESQLREFQEEMATLRESL 829
Cdd:COG5185 466 EEAYDEinRSVRSKKEDLNEELTQIESRVSTLKATL 501
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
278-660 |
1.21e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 278 LKHLQEQKDSQCLHVEEYQNLVKDLRM--ELEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKDKETVFLQYrlqdl 355
Cdd:PTZ00121 1527 AKKAEEAKKADEAKKAEEKKKADELKKaeELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLY----- 1601
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 356 qQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEiq 435
Cdd:PTZ00121 1602 -EEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE-- 1678
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 436 KLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAhRKIEncllQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNR 515
Cdd:PTZ00121 1679 EAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEK-KKAE----ELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDE 1753
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 516 QRLQELSSELSEGQRRLSNAEKEKSLL---------QKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEE-ELLEIK 585
Cdd:PTZ00121 1754 EEKKKIAHLKKEEEKKAEEIRKEKEAVieeeldeedEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEmEDSAIK 1833
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907190486 586 GLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQK 660
Cdd:PTZ00121 1834 EVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMA 1908
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
485-821 |
1.22e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.04 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 485 QKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQ-VS 563
Cdd:pfam02463 655 EEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQdKI 734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 564 EQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKmakEHLRKLDEEKENLQAELTS 643
Cdd:pfam02463 735 NEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEK---EEKLKAQEEELRALEEELK 811
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 644 RSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSaiqkEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEK 723
Cdd:pfam02463 812 EEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAE----EELERLEEEITKEELLQELLLKEEELEEQKLKDE 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 724 LTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQG------FQQQSEQEVHNFDKKLEEMSNQVLQW 797
Cdd:pfam02463 888 LESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEepeellLEEADEKEKEENNKEEEEERNKRLLL 967
|
330 340
....*....|....*....|....
gi 1907190486 798 QRQHQSDLKMLAAKESQLREFQEE 821
Cdd:pfam02463 968 AKEELGKVNLMAIEEFEEKEERYN 991
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
393-607 |
1.28e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 393 SLREKEAELEKLQCTTKELDtsLQEARQSTSKID-CEALRAEIQKLKDSLEEAREQLkvsdQNLTQSKEEAHLSASSLED 471
Cdd:COG4717 50 RLEKEADELFKPQGRKPELN--LKELKELEEELKeAEEKEEEYAELQEELEELEEEL----EELEAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 472 AHRKIENcLLQDKQKEEVIKDLQSQLHKLQKEsskiEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSL-LQKTLDEDE 550
Cdd:COG4717 124 LLQLLPL-YQELEALEAELAELPERLEELEER----LEELRELEEELEELEAELAELQEELEELLEQLSLaTEEELQDLA 198
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1907190486 551 KKIDELfhstqvsEQKQRELTNSIRKLEEELLEikglLEEKREQLKKSKEQEKALEE 607
Cdd:COG4717 199 EELEEL-------QQRLAELEEELEEAQEELEE----LEEELEQLENELEAAALEER 244
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
484-754 |
1.38e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 42.73 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 484 KQKEEVIKDLQSQLhklQKESSK-------IEEERKHNRQRLQELSSELSE-GQRRLSNAEKEKSllQKTLDEDEKKIDE 555
Cdd:PTZ00108 995 KRKEYLLGKLEREL---ARLSNKvrfikhvINGELVITNAKKKDLVKELKKlGYVRFKDIIKKKS--EKITAEEEEGAEE 1069
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 556 LFHSTQVSEQKQRE---------------LTN-SIRKLEEELLEIKGLLEEKR---------EQLKKSKEQEKALEEEIE 610
Cdd:PTZ00108 1070 DDEADDEDDEEELGaavsydyllsmpiwsLTKeKVEKLNAELEKKEKELEKLKnttpkdmwlEDLDKFEEALEEQEEVEE 1149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 611 ALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKY----NSSQKVIQELNAEIARQKDSIMILQTQLDSA 686
Cdd:PTZ00108 1150 KEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVvgnsKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDE 1229
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907190486 687 IQKEKNCFQNMV---SKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAA 754
Cdd:PTZ00108 1230 EQKTKPKKSSVKrlkSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGS 1300
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
486-624 |
1.59e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.88 E-value: 1.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 486 KEEVIKDLQSQLHKLqkeSSKIEEERKHNrqrlQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvsEQ 565
Cdd:PRK09039 51 KDSALDRLNSQIAEL---ADLLSLERQGN----QDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAA-------EG 116
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907190486 566 KQRELTnsirkleEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQ-----EAKRKEKMAK 624
Cdd:PRK09039 117 RAGELA-------QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAaldasEKRDRESQAK 173
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
281-829 |
1.63e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.58 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 281 LQEQKDSQCLHVEEYQNLVKDLR---MELEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKD--KETVFLQYRLQDL 355
Cdd:PRK01156 171 LKDVIDMLRAEISNIDYLEEKLKssnLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNnlKSALNELSSLEDM 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 356 QQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKEldtSLQEARQSTSKIDcealrAEIQ 435
Cdd:PRK01156 251 KNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKN---DIENKKQILSNID-----AEIN 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 436 KLKDSLEEAREQLKVSDQNLTQSKEeahlsassledaHRKIENCLLQDKQKEEvikDLQSQLHKLQKESSKIEEERKHNR 515
Cdd:PRK01156 323 KYHAIIKKLSVLQKDYNDYIKKKSR------------YDDLNNQILELEGYEM---DYNSYLKSIESLKKKIEEYSKNIE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 516 QRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLE-EELLEIKG--LLEEKR 592
Cdd:PRK01156 388 RMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNgQSVCPVCGttLGEEKS 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 593 EQLKKSKEQEKA-LEEEI-----------EALRQEAKRKEKMAKEHLRKL---DEEKENLQAELTS---RSSHLDSSLNK 654
Cdd:PRK01156 468 NHIINHYNEKKSrLEEKIreieievkdidEKIVDLKKRKEYLESEEINKSineYNKIESARADLEDikiKINELKDKHDK 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 655 YNSSQKVIQELNAEIARQK-DSIMILQTQLDS----AIQKEKNCFQNMVsKEAYEELVRKSGNCQDDLTQALEKLTQATS 729
Cdd:PRK01156 548 YEEIKNRYKSLKLEDLDSKrTSWLNALAVISLidieTNRSRSNEIKKQL-NDLESRLQEIEIGFPDDKSYIDKSIREIEN 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 730 ETKSLNRSLQQTQERKAQLED---EIAAYEER---MKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQ- 802
Cdd:PRK01156 627 EANNLNNKYNEIQENKILIEKlrgKIDNYKKQiaeIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEi 706
|
570 580
....*....|....*....|....*....
gi 1907190486 803 --SDLKMLAAKESQLREFQEEMATLRESL 829
Cdd:PRK01156 707 lrTRINELSDRINDINETLESMKKIKKAI 735
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
376-525 |
2.02e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.49 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 376 KDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEArqstskidcEALRAEIQKLKDSLEEAREQLKVSDQNL 455
Cdd:PRK09039 51 KDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAA---------EAERSRLQALLAELAGAGAAAEGRAGEL 121
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907190486 456 TQS-KEEAHLSASSLedahRKIEncLLQDKqkeevIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSEL 525
Cdd:PRK09039 122 AQElDSEKQVSARAL----AQVE--LLNQQ-----IAALRRQLAALEAALDASEKRDRESQAKIADLGRRL 181
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
374-740 |
2.39e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 41.67 E-value: 2.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 374 QDKDERLHELEKNLMQVQNS--LREKEAELEKLQCTTKELDtSLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVS 451
Cdd:pfam09731 124 QEKEKALEEVLKEAISKAESatAVAKEAKDDAIQAVKAHTD-SLKEASDTAEISREKATDSALQKAEALAEKLKEVINLA 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 452 DQNLTQSKEEahLSASSLEDAHRKIENcLLQDKQKEEVIKDLQSQLHKLQKESskiEEERKHNRQRLQ----ELSSELSE 527
Cdd:pfam09731 203 KQSEEEAAPP--LLDAAPETPPKLPEH-LDNVEEKVEKAQSLAKLVDQYKELV---ASERIVFQQELVsifpDIIPVLKE 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 528 GQrrLSNAEKEKSLLQKTLDEDEKkidelfHSTQVSEQKQRELtnsiRKLEEELLEIKGLLEEKREQLkkSKEQEKALEE 607
Cdd:pfam09731 277 DN--LLSNDDLNSLIAHAHREIDQ------LSKKLAELKKREE----KHIERALEKQKEELDKLAEEL--SARLEEVRAA 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 608 EIEALRQEAKRKEkmakEHLRKLDEEKenLQAELTSRSSHLDSSLNKYNSSQKviQELNAEIARqkdsimilqtQLDSAI 687
Cdd:pfam09731 343 DEAQLRLEFERER----EEIRESYEEK--LRTELERQAEAHEEHLKDVLVEQE--IELQREFLQ----------DIKEKV 404
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1907190486 688 QKEKNCFQNMVSkEAYEELvrksgncqddltQALEKLTQATSETKSLNRSLQQ 740
Cdd:pfam09731 405 EEERAGRLLKLN-ELLANL------------KGLEKATSSHSEVEDENRKAQQ 444
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
342-556 |
2.63e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.35 E-value: 2.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 342 DKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQcttkeldtslqearqs 421
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAE---------------- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 422 tskidcealrAEIQKLKDSLEEAREQLKVSDQNLtqSKEEAHLSASSLEDAHRKIEN-CLLQDKQKeEVIKDLQSQLHKL 500
Cdd:COG3883 79 ----------AEIEERREELGERARALYRSGGSV--SYLDVLLGSESFSDFLDRLSAlSKIADADA-DLLEELKADKAEL 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1907190486 501 QKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDEL 556
Cdd:COG3883 146 EAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAEL 201
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
588-829 |
2.68e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 2.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 588 LEEKREQLKKSKEQEKALEEeIEALRQEAKRkekmAKEHLRKLDEEKENLQAELTSRsshldsslnKYNSSQKVIQELNA 667
Cdd:COG4913 237 LERAHEALEDAREQIELLEP-IRELAERYAA----ARERLAELEYLRAALRLWFAQR---------RLELLEAELEELRA 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 668 EIARQKDSIMILQTQLDSAIQKEkncfqnmvskEAYEELVRKSGncqddlTQALEKLtqatsetkslnrslqqtQERKAQ 747
Cdd:COG4913 303 ELARLEAELERLEARLDALREEL----------DELEAQIRGNG------GDRLEQL-----------------EREIER 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 748 LEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRE 827
Cdd:COG4913 350 LERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIA 429
|
..
gi 1907190486 828 SL 829
Cdd:COG4913 430 SL 431
|
|
| RNase_Y_N |
pfam12072 |
RNase Y N-terminal region; |
449-625 |
2.78e-03 |
|
RNase Y N-terminal region;
Pssm-ID: 463456 [Multi-domain] Cd Length: 201 Bit Score: 40.25 E-value: 2.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 449 KVSDQNLTQSKEEAhlsASSLEDAHRKIENcllqdkQKEEVIKDLQSQLHKLQKEsskIEEERKHNRQRLQELSSELseg 528
Cdd:pfam12072 23 SIAEAKIGSAEELA---KRIIEEAKKEAET------KKKEALLEAKEEIHKLRAE---AERELKERRNELQRQERRL--- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 529 QRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGL-LEEKREQLKKSKEQEKALE- 606
Cdd:pfam12072 88 LQKEETLDRKDESLEKKEESLEKKEKELEAQQQQLEEKEEELEELIEEQRQELERISGLtSEEAKEILLDEVEEELRHEa 167
|
170 180
....*....|....*....|.
gi 1907190486 607 -EEIEALRQEAKRK-EKMAKE 625
Cdd:pfam12072 168 aVMIKEIEEEAKEEaDKKAKE 188
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
430-912 |
2.81e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.81 E-value: 2.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 430 LRAEIQKLKDsleeAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEE 509
Cdd:PRK01156 178 LRAEISNIDY----LEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNR 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 510 ERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTN----------SIRKLEE 579
Cdd:PRK01156 254 YESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNidaeinkyhaIIKKLSV 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 580 ------ELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSrSSHLDSSLN 653
Cdd:PRK01156 334 lqkdynDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEID-PDAIKKELN 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 654 KYNSSqkvIQELNAEIARqkdsimiLQTQLDSAIQKEKNCFQNM---------------VSKEAYEELVRKSGNcqdDLT 718
Cdd:PRK01156 413 EINVK---LQDISSKVSS-------LNQRIRALRENLDELSRNMemlngqsvcpvcgttLGEEKSNHIINHYNE---KKS 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 719 QALEKLTQATSETKSLNRSLQQTQERKAQLE----DEIAAYEERMKKLNMELKKLQgfqqQSEQEVHNFDKKLEEMSNQV 794
Cdd:PRK01156 480 RLEEKIREIEIEVKDIDEKIVDLKKRKEYLEseeiNKSINEYNKIESARADLEDIK----IKINELKDKHDKYEEIKNRY 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 795 ----LQWQRQHQSD-LKMLA--------AKESQLREFQEEMATLRESLlaDEKEPYSPPAKLTPKETCRHHRENDQIMNN 861
Cdd:PRK01156 556 kslkLEDLDSKRTSwLNALAvislidieTNRSRSNEIKKQLNDLESRL--QEIEIGFPDDKSYIDKSIREIENEANNLNN 633
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 1907190486 862 VEQWAKEQKIANEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLK 912
Cdd:PRK01156 634 KYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLK 684
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
273-922 |
2.97e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.50 E-value: 2.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 273 DITKILKHLQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKDKETVFLQYRL 352
Cdd:pfam02463 230 DYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRK 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 353 QDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLmqvqnslreKEAELEKLQCTTKELDTSLQEARQSTSKIDcealra 432
Cdd:pfam02463 310 VDDEEKLKESEKEKKKAEKELKKEKEEIEELEKEL---------KELEIKREAEEEEEEELEKLQEKLEQLEEE------ 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 433 eiQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERK 512
Cdd:pfam02463 375 --LLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEE 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 513 HNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKR 592
Cdd:pfam02463 453 LEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLG 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 593 E-QLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIAR 671
Cdd:pfam02463 533 DlGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKAT 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 672 QKDSIMILQTQLDSAIQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQaTSETKSLNRSLQQTQERKAQLEDE 751
Cdd:pfam02463 613 LEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKAS-LSELTKELLEIQELQEKAESELAK 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 752 IAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQwqrqhqsDLKMLAAKESQLREFQEEMATLRESLLA 831
Cdd:pfam02463 692 EEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINE-------ELKLLKQKIDEEEEEEEKSRLKKEEKEE 764
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 832 DEKEpysppakLTPKETCRHHRENDQIMNNVEQWAKEQKIANEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKL 911
Cdd:pfam02463 765 EKSE-------LSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEE 837
|
650
....*....|.
gi 1907190486 912 KNEIEEKKLKA 922
Cdd:pfam02463 838 LALELKEEQKL 848
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
575-924 |
3.31e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.60 E-value: 3.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 575 RKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLD--SSL 652
Cdd:COG5022 785 RLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKrfSLL 864
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 653 NKYNSSQKVIQELnaEIARQKdsimilQTQLDSAIQKEKNCFQnmVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETK 732
Cdd:COG5022 865 KKETIYLQSAQRV--ELAERQ------LQELKIDVKSISSLKL--VNLELESEIIELKKSLSSDLIENLEFKTELIARLK 934
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 733 SLNRSLQ---------QTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQS---EQEVHNFDKKLEEmsnqvlqwqrq 800
Cdd:COG5022 935 KLLNNIDleegpsieyVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGnkaNSELKNFKKELAE----------- 1003
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 801 HQSDLKMLAAKESQLREFQEEMATLResllADEKEPYSPPAKLtpketcrhhrendQIMNNVEqwakEQKIANEKLGNKL 880
Cdd:COG5022 1004 LSKQYGALQESTKQLKELPVEVAELQ----SASKIISSESTEL-------------SILKPLQ----KLKGLLLLENNQL 1062
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1907190486 881 REQVKYIaKLTGEKDHLHNVMVHLQQENKKLKNEIEEKKLKAGN 924
Cdd:COG5022 1063 QARYKAL-KLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTN 1105
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
511-790 |
3.71e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.26 E-value: 3.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 511 RKHNRQRLQELSSELSEGQRRLSNA----EKEKSLL-------QKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEE 579
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESnelhEKQKFYLrqsvidlQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVH 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 580 ELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQaelTSRSSHLDSSLNKynssq 659
Cdd:pfam15921 153 ELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMS---TMHFRSLGSAISK----- 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 660 kVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSK--EAYEELVRKSgncQDDLTQALEKLTQATSETKSLNRS 737
Cdd:pfam15921 225 -ILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQhqDRIEQLISEH---EVEITGLTEKASSARSQANSIQSQ 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 738 LQQTQER-----------------------------KAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLE 788
Cdd:pfam15921 301 LEIIQEQarnqnsmymrqlsdlestvsqlrselreaKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQ 380
|
..
gi 1907190486 789 EM 790
Cdd:pfam15921 381 KL 382
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
378-624 |
3.81e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 40.28 E-value: 3.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 378 ERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTskidcEALRAEIQKLKDSLEEAREQLKVSDQNLTQ 457
Cdd:COG1340 22 EEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKR-----DELNEKVKELKEERDELNEKLNELREELDE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 458 SKEEA---HLSASSLEDAHRKIE--------NCLLQDKQKE--EVIKDLQSQLHKLQKESsKIEEERKHNRQRLQELSSE 524
Cdd:COG1340 97 LRKELaelNKAGGSIDKLRKEIErlewrqqtEVLSPEEEKElvEKIKELEKELEKAKKAL-EKNEKLKELRAELKELRKE 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 525 LSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKA 604
Cdd:COG1340 176 AEEIHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEAQEKADELHEEIIELQKELRELRKELKKLRKKQRA 255
|
250 260
....*....|....*....|
gi 1907190486 605 LEEEIEALRQEAKRKEKMAK 624
Cdd:COG1340 256 LKREKEKEELEEKAEEIFEK 275
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
387-691 |
4.04e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 40.82 E-value: 4.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 387 LMQVQNSLREKEAELEKLQCTTKELDTSLQEARQstskiDCEALRAEIQKLKDSLEEAREQlkVSDQNLTQSKEEAHLSA 466
Cdd:pfam19220 50 LLELEALLAQERAAYGKLRRELAGLTRRLSAAEG-----ELEELVARLAKLEAALREAEAA--KEELRIELRDKTAQAEA 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 467 --SSLEDAHRKIENCLLQDK-------QKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEK 537
Cdd:pfam19220 123 leRQLAAETEQNRALEEENKalreeaqAAEKALQRAEGELATARERLALLEQENRRLQALSEEQAAELAELTRRLAELET 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 538 EKSLLQKTLDEDEKKID-------------ELFHSTQVSEQ-----KQRELTNSIRKLEEELLEIKGLLEEKREQL---- 595
Cdd:pfam19220 203 QLDATRARLRALEGQLAaeqaereraeaqlEEAVEAHRAERaslrmKLEALTARAAATEQLLAEARNQLRDRDEAIraae 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 596 KKSKEQEKA---LEEEIEALRQEAKRKEKMAKEHLR---KLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEI 669
Cdd:pfam19220 283 RRLKEASIErdtLERRLAGLEADLERRTQQFQEMQRaraELEERAEMLTKALAAKDAALERAEERIASLSDRIAELTKRF 362
|
330 340
....*....|....*....|..
gi 1907190486 670 ARQKDSIMILQTQLDSAIQKEK 691
Cdd:pfam19220 363 EVERAALEQANRRLKEELQRER 384
|
|
| Caldesmon |
pfam02029 |
Caldesmon; |
374-640 |
4.25e-03 |
|
Caldesmon;
Pssm-ID: 460421 [Multi-domain] Cd Length: 495 Bit Score: 40.62 E-value: 4.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 374 QDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTslqearqstsKIDCEALRAEIQKLKDSLEEAREQLKVSDQ 453
Cdd:pfam02029 80 QEALERQKEFDPTIADEKESVAERKENNEEEENSSWEKEE----------KRDSRLGRYKEEETEIREKEYQENKWSTEV 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 454 NLTQSKEEAHlsasslEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEE-ERKHNRQRLQELSSELSE----- 527
Cdd:pfam02029 150 RQAEEEGEEE------EDKSEEAEEVPTENFAKEEVKDEKIKKEKKVKYESKVFLDqKRGHPEVKSQNGEEEVTKlkvtt 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 528 -GQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRE-LTNSIRKLEEELLEIKglleekreqlKKSKEQEKAL 605
Cdd:pfam02029 224 kRRQGGLSQSQEREEEAEVFLEAEQKLEELRRRRQEKESEEFEkLRQKQQEAELELEELK----------KKREERRKLL 293
|
250 260 270
....*....|....*....|....*....|....*
gi 1907190486 606 EEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAE 640
Cdd:pfam02029 294 EEEEQRRKQEEAERKLREEEEKRRMKEEIERRRAE 328
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
574-670 |
4.53e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.84 E-value: 4.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 574 IRKLEEELLEikglLEEKREQLKKskEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSShLDSSLN 653
Cdd:COG0542 413 LDELERRLEQ----LEIEKEALKK--EQDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEE-LEQRYG 485
|
90
....*....|....*..
gi 1907190486 654 KYNSSQKVIQELNAEIA 670
Cdd:COG0542 486 KIPELEKELAELEEELA 502
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
272-690 |
4.76e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 40.89 E-value: 4.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 272 EDITKILKHLQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHglREETSCVIEKKDKETVFL-QY 350
Cdd:pfam07111 245 QELLDTMQHLQEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEFP--KKCRSLLNRWREKVFALMvQL 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 351 RLQDLQQQYTESQKLSLKKDKLlqdkdERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARqstskidcEAL 430
Cdd:pfam07111 323 KAQDLEHRDSVKQLRGQVAELQ-----EQVTSQSQEQAILQRALQDKAAEVEVERMSAKGLQMELSRAQ--------EAR 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 431 RAEIQKlkdsLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKI---ENCLLQDKQKEEVIKDLQSQ---LHKLQKES 504
Cdd:pfam07111 390 RRQQQQ----TASAEEQLKFVVNAMSSTQIWLETTMTRVEQAVARIpslSNRLSYAVRKVHTIKGLMARkvaLAQLRQES 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 505 SKIEEERKHNRQRLQELSSELSEGQRRLsNAEKEKS--LLQKtldedekkidELFHSTQVSEQKQRELTNSIRKLEEELL 582
Cdd:pfam07111 466 CPPPPPAPPVDADLSLELEQLREERNRL-DAELQLSahLIQQ----------EVGRAREQGEAERQQLSEVAQQLEQELQ 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 583 EIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLR-KLDEEKENLQAELTSRSSHLDSSLNKYNSSQKV 661
Cdd:pfam07111 535 RAQESLASVGQQLEVARQGQQESTEEAASLRQELTQQQEIYGQALQeKVAEVETRLREQLSDTKRRLNEARREQAKAVVS 614
|
410 420
....*....|....*....|....*....
gi 1907190486 662 IQELNAEIARQKDSIMILQTQLDSAIQKE 690
Cdd:pfam07111 615 LRQIQHRATQEKERNQELRRLQDEARKEE 643
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
377-794 |
4.92e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 40.59 E-value: 4.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 377 DERLHELEK-----NLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTskidcEALRAEIQKLKDSLEEAREQLKVS 451
Cdd:PRK04778 85 EEQLFEAEElndkfRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESE-----EKNREEVEQLKDLYRELRKSLLAN 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 452 DQNLTQSKEEAHLSASSLEDAHRKIENclLQDK----QKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSE 527
Cdd:PRK04778 160 RFSFGPALDELEKQLENLEEEFSQFVE--LTESgdyvEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKA 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 528 GQRRLsnaEKEKSLLqktldeDEKKIDELFHstqvseqkqrELTNSIRKLEEELLEIKglLEEKREQLKKSKEQEKAL-- 605
Cdd:PRK04778 238 GYREL---VEEGYHL------DHLDIEKEIQ----------DLKEQIDENLALLEELD--LDEAEEKNEEIQERIDQLyd 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 606 --EEEIEAlRQEAKRKEKMAKEHLRKLDEEKENLQAELT--SRSSHL-DSSLNKYNSSQKVIQELNA-------EIARQK 673
Cdd:PRK04778 297 ilEREVKA-RKYVEKNSDTLPDFLEHAKEQNKELKEEIDrvKQSYTLnESELESVRQLEKQLESLEKqydeiteRIAEQE 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 674 -------DSIMILQTQLDsAIQKEKNCFQNMVSKEAYEELvrksgncqddltQALEKLTQATSETKSLNRSLQQTQ---- 742
Cdd:PRK04778 376 iayselqEELEEILKQLE-EIEKEQEKLSEMLQGLRKDEL------------EAREKLERYRNKLHEIKRYLEKSNlpgl 442
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 1907190486 743 -----ERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQV 794
Cdd:PRK04778 443 pedylEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENA 499
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
650-898 |
5.18e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.77 E-value: 5.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 650 SSLNKYNSSQkvIQELNAEIARQKDSIMILQTQLDsaIQKEkncFQNMVSKEAYEELVRKSgncqddltqalEKLTQATS 729
Cdd:PHA02562 166 SEMDKLNKDK--IRELNQQIQTLDMKIDHIQQQIK--TYNK---NIEEQRKKNGENIARKQ-----------NKYDELVE 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 730 ETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGfQQQSEQEVHNF-----------------DKKLEEMSN 792
Cdd:PHA02562 228 EAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKS-KIEQFQKVIKMyekggvcptctqqisegPDRITKIKD 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 793 QVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRE--SLLADEKEPYSppakltpketcRHHRENDQIMNNVEQWAKEQK 870
Cdd:PHA02562 307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLElkNKISTNKQSLI-----------TLVDKAKKVKAAIEELQAEFV 375
|
250 260 270
....*....|....*....|....*....|.
gi 1907190486 871 IANE---KLGNKLREQVKYIAKLTGEKDHLH 898
Cdd:PHA02562 376 DNAEelaKLQDELDKIVKTKSELVKEKYHRG 406
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
383-664 |
5.53e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 40.80 E-value: 5.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 383 LEKnLMQVQNSLREKEAELEKLQCTT------KELDtSLQEARQSTSKIDcEALRAEIQKLK-----DSLEEAREQLKVS 451
Cdd:PTZ00108 1101 KEK-VEKLNAELEKKEKELEKLKNTTpkdmwlEDLD-KFEEALEEQEEVE-EKEIAKEQRLKsktkgKASKLRKPKLKKK 1177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 452 DQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSqlhklqkESSKIEEERKHNRQRLQELSSELSEGQRR 531
Cdd:PTZ00108 1178 EKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSS-------GSDQEDDEEQKTKPKKSSVKRLKSKKNNS 1250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 532 LSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQrelTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEA 611
Cdd:PTZ00108 1251 SKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPP---PPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKS 1327
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1907190486 612 lRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQE 664
Cdd:PTZ00108 1328 -EKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDE 1379
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
264-478 |
5.82e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 5.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 264 PPTSSEDCEDITKILKHLQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREEtscvIEKKDK 343
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAE----LAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 344 ETVFLQYRLQDLQQQYTE----SQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEAR 419
Cdd:COG4942 91 EIAELRAELEAQKEELAEllraLYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1907190486 420 QSTSKIdcEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIEN 478
Cdd:COG4942 171 AERAEL--EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
324-674 |
5.90e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.27 E-value: 5.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 324 ELDLHGLREETSCVIEKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEK 403
Cdd:COG4372 12 RLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 404 LQCTTKELDTSLQEARQSTSKI--DCEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENC-- 479
Cdd:COG4372 92 AQAELAQAQEELESLQEEAEELqeELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALeq 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 480 ---LLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDEL 556
Cdd:COG4372 172 elqALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEEL 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 557 FHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKEN 636
Cdd:COG4372 252 LEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELA 331
|
330 340 350
....*....|....*....|....*....|....*...
gi 1907190486 637 LQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKD 674
Cdd:COG4372 332 LAILLAELADLLQLLLVGLLDNDVLELLSKGAEAGVAD 369
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
543-672 |
6.45e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 39.95 E-value: 6.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 543 QKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLE-------IKGLLEEKREQLKKSKEQEKALEEEIEALRQE 615
Cdd:PRK09039 52 DSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAaeaersrLQALLAELAGAGAAAEGRAGELAQELDSEKQV 131
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907190486 616 AKRkekmAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVI----QELNAEIARQ 672
Cdd:PRK09039 132 SAR----ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIadlgRRLNVALAQR 188
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
428-768 |
6.49e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 40.22 E-value: 6.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 428 EALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAhlsassLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKI 507
Cdd:PLN03229 425 EAVKTPVRELEGEVEKLKEQILKAKESSSKPSELA------LNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKA 498
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 508 EEERKHNRQRLQELSSELS-EGQRRLSNAEKEKSLLQKtLDedekKIDELFHSTQVSEQKQR--ELTNSIRKLEEELLEi 584
Cdd:PLN03229 499 NSQDQLMHPVLMEKIEKLKdEFNKRLSRAPNYLSLKYK-LD----MLNEFSRAKALSEKKSKaeKLKAEINKKFKEVMD- 572
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 585 KGLLEEKREQLKKSKEQEKAleEEIEALRQEAKRK-EKMAKEHLRKLDE--EKENLQAELTSRSSHLDSSLNKYNSSQKV 661
Cdd:PLN03229 573 RPEIKEKMEALKAEVASSGA--SSGDELDDDLKEKvEKMKKEIELELAGvlKSMGLEVIGVTKKNKDTAEQTPPPNLQEK 650
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 662 IQELNAEIARQKDSImILQTQLDSAIQKEKncfqnmvskeayEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQT 741
Cdd:PLN03229 651 IESLNEEINKKIERV-IRSSDLKSKIELLK------------LEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNSSEL 717
|
330 340
....*....|....*....|....*..
gi 1907190486 742 QERKAQLEDEIAAYEERMKKLNMELKK 768
Cdd:PLN03229 718 KEKFEELEAELAAARETAAESNGSLKN 744
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
344-643 |
6.55e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 40.22 E-value: 6.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 344 ETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLH-ELEKNLMQVQN--SLREKeaeLEKLQCTTKELDTSLQEARQ 420
Cdd:PLN03229 480 IAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKdEFNKRLSRAPNylSLKYK---LDMLNEFSRAKALSEKKSKA 556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 421 stskidcEALRAEI-QKLKDSLE--EAREQLKVSDQNLTQSKeeahlsASSLEDahrkienclLQDKQKEEVIKdlqsql 497
Cdd:PLN03229 557 -------EKLKAEInKKFKEVMDrpEIKEKMEALKAEVASSG------ASSGDE---------LDDDLKEKVEK------ 608
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 498 hklqkesskieeerkHNRQRLQELSSEL-SEGQRRLSNAEKEKSLLQKTLDEDEK-KIDELfhstqvSEQKQRELTNSIR 575
Cdd:PLN03229 609 ---------------MKKEIELELAGVLkSMGLEVIGVTKKNKDTAEQTPPPNLQeKIESL------NEEINKKIERVIR 667
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907190486 576 kleeeLLEIKGLLEE-KREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLrKLDEEKENLQAELTS 643
Cdd:PLN03229 668 -----SSDLKSKIELlKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNSS-ELKEKFEELEAELAA 730
|
|
| Mod_r |
pfam07200 |
Modifier of rudimentary (Mod(r)) protein; This family represents a conserved region ... |
546-661 |
7.52e-03 |
|
Modifier of rudimentary (Mod(r)) protein; This family represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic, and both of these regions are represented in this family. Members of this family include the Vps37 subunit of the endosomal sorting complex ESCRT-I, a complex involved in recruiting transport machinery for protein sorting at the multivesicular body (MVB). The yeast ESCRT-I complex consists of three proteins (Vps23, Vps28 and Vps37). The mammalian homolog of Vps37 interacts with Tsg101 (Pfam: PF05743) through its mod(r) domain and its function is essential for lysosomal sorting of EGF receptors.
Pssm-ID: 462117 [Multi-domain] Cd Length: 146 Bit Score: 37.98 E-value: 7.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 546 LDEDEKKIDELFHST---QVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRK-EK 621
Cdd:pfam07200 11 LLNDEDKLDAFVHSLpqvKALQAEKEELLAENESLAEENLSLEPELEELRSQLQELLEELKALKSEYEEKEQELDELlSK 90
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1907190486 622 MAKEHL--------RKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKV 661
Cdd:pfam07200 91 FSPDALlarlqaaaAEAEEESEALAESFLEGEIDLDEFLKQFKEKRKL 138
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
724-919 |
7.54e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 7.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 724 LTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMsnqvlqwqrqhQS 803
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL-----------EA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 804 DLKMLAAKESQLREFQEEM-ATLRESLLADEK-EPYSPPAKLTPKETCRHHRENDQIMNNVEQWAKEQKianEKLGNKLR 881
Cdd:COG4942 84 ELAELEKEIAELRAELEAQkEELAELLRALYRlGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQA---EELRADLA 160
|
170 180 190
....*....|....*....|....*....|....*...
gi 1907190486 882 EQVKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEEKK 919
Cdd:COG4942 161 ELAALRAELEAERAELEALLAELEEERAALEALKAERQ 198
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
589-883 |
8.25e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.33 E-value: 8.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 589 EEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAkehlRKLDEEKEN---LQAELTSRSSHLDSSLNKYNSSQKviqel 665
Cdd:PRK04863 279 NERRVHLEEALELRRELYTSRRQLAAEQYRLVEMA----RELAELNEAesdLEQDYQAASDHLNLVQTALRQQEK----- 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 666 naeIARQKDSIMILQTQLDSaiqkekncfQNMVSKEAYEELVRksgnCQDDLTQALEKLTQATSETKSLNRSLQQTQERK 745
Cdd:PRK04863 350 ---IERYQADLEELEERLEE---------QNEVVEEADEQQEE----NEARAEAAEEEVDELKSQLADYQQALDVQQTRA 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 746 AQLEDEIAAYeERMKKLN----MELKKLQGFQQQseqevhnFDKKLEEMSNQVLQWQRQhqsdlkmLAAKESQLREFQEE 821
Cdd:PRK04863 414 IQYQQAVQAL-ERAKQLCglpdLTADNAEDWLEE-------FQAKEQEATEELLSLEQK-------LSVAQAAHSQFEQA 478
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907190486 822 MATLREslLADEKEPysPPAKLTPKETCRHHRENDQIMNNVEQW-----AKEQKIANEKLGNKLREQ 883
Cdd:PRK04863 479 YQLVRK--IAGEVSR--SEAWDVARELLRRLREQRHLAEQLQQLrmrlsELEQRLRQQQRAERLLAE 541
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
488-768 |
8.34e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 39.51 E-value: 8.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 488 EVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQ 567
Cdd:COG1340 1 SKTDELSSSLEELEEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEER 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 568 RELTNSIRKLEEELLEIKglleEKREQLKKSKEQEKALEEEIEALRQEAKRkEKMAKEHLRKLDEEKENLQAELtsrssh 647
Cdd:COG1340 81 DELNEKLNELREELDELR----KELAELNKAGGSIDKLRKEIERLEWRQQT-EVLSPEEEKELVEKIKELEKEL------ 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 648 ldSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVS-KEAYEELVRKSgncqDDLTQALEKLTQ 726
Cdd:COG1340 150 --EKAKKALEKNEKLKELRAELKELRKEAEEIHKKIKELAEEAQELHEEMIElYKEADELRKEA----DELHKEIVEAQE 223
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1907190486 727 ATSEtksLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKK 768
Cdd:COG1340 224 KADE---LHEEIIELQKELRELRKELKKLRKKQRALKREKEK 262
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
593-691 |
8.36e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.06 E-value: 8.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 593 EQLKKSKEQEKALEEEIEALRQEakrKEKMAKEHLRKLDEEKENLQAELTSrsshLDSSLNKYNSSQKVIQELNAEIARQ 672
Cdd:COG0542 411 EELDELERRLEQLEIEKEALKKE---QDEASFERLAELRDELAELEEELEA----LKARWEAEKELIEEIQELKEELEQR 483
|
90
....*....|....*....
gi 1907190486 673 KDSIMILQTQLDSAIQKEK 691
Cdd:COG0542 484 YGKIPELEKELAELEEELA 502
|
|
| GAS |
pfam13851 |
Growth-arrest specific micro-tubule binding; This family is the highly conserved central ... |
477-621 |
8.80e-03 |
|
Growth-arrest specific micro-tubule binding; This family is the highly conserved central region of a number of metazoan proteins referred to as growth-arrest proteins. In mouse, Gas8 is predominantly a testicular protein, whose expression is developmentally regulated during puberty and spermatogenesis. In humans, it is absent in infertile males who lack the ability to generate gametes. The localization of Gas8 in the motility apparatus of post-meiotic gametocytes and mature spermatozoa, together with the detection of Gas8 also in cilia at the apical surfaces of epithelial cells lining the pulmonary bronchi and Fallopian tubes suggests that the Gas8 protein may have a role in the functioning of motile cellular appendages. Gas8 is a microtubule-binding protein localized to regions of dynein regulation in mammalian cells.
Pssm-ID: 464001 [Multi-domain] Cd Length: 200 Bit Score: 38.73 E-value: 8.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 477 ENCLLQDKQKEEvIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKT---LDEDEKKI 553
Cdd:pfam13851 23 NNLELIKSLKEE-IAELKKKEERNEKLMSEIQQENKRLTEPLQKAQEEVEELRKQLENYEKDKQSLKNLkarLKVLEKEL 101
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907190486 554 DELFHSTQVSEQKqreltnsIRKLEEELLEIKGLLEEK-REQLKKSKEQEKALEEEIEALRQEAKRKEK 621
Cdd:pfam13851 102 KDLKWEHEVLEQR-------FEKVERERDELYDKFEAAiQDVQQKTGLKNLLLEKKLQALGETLEKKEA 163
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
340-829 |
8.92e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.16 E-value: 8.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 340 KKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKEldtslqear 419
Cdd:pfam01576 149 KLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTD--------- 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 420 qstskidceaLRAEIQKLKDSLEEAREQlkvsdqnLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHK 499
Cdd:pfam01576 220 ----------LQEQIAELQAQIAELRAQ-------LAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLES 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 500 LQKESSKIEEERKHNRQRLQELSSELSEG-------QRRLSNAEKEKSLLQKTLDEDEKKidelfHSTQVSEQKQRELTN 572
Cdd:pfam01576 283 ERAARNKAEKQRRDLGEELEALKTELEDTldttaaqQELRSKREQEVTELKKALEEETRS-----HEAQLQEMRQKHTQA 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 573 sirkleeelleikglLEEKREQLKKSKEQEKALEEEIEALRQEAKRkekmAKEHLRKLDEEKENLQAELTSRSSHLDSSL 652
Cdd:pfam01576 358 ---------------LEELTEQLEQAKRNKANLEKAKQALESENAE----LQAELRTLQQAKQDSEHKRKKLEGQLQELQ 418
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 653 NKYNSSQKVIQELNAEIARqkdsimiLQTQLDSAiqkekncfqnmvskeayeelvrksgncQDDLTQALEKLTQATSETK 732
Cdd:pfam01576 419 ARLSESERQRAELAEKLSK-------LQSELESV---------------------------SSLLNEAEGKNIKLSKDVS 464
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 733 SLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKE 812
Cdd:pfam01576 465 SLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALE 544
|
490
....*....|....*..
gi 1907190486 813 SQLREFQEEMATLRESL 829
Cdd:pfam01576 545 EGKKRLQRELEALTQQL 561
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
491-919 |
9.03e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 39.81 E-value: 9.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 491 KDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSnaeKEKSLLQKTLDEDEKKIDelfhstqVSEQKQREL 570
Cdd:pfam10174 87 RDLNQLLQQDFTTSPVDGEDKFSTPELTEENFRRLQSEHERQA---KELFLLRKTLEEMELRIE-------TQKQTLGAR 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 571 TNSIRKLeEELLEIKGL----LEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENlqAELTSRSS 646
Cdd:pfam10174 157 DESIKKL-LEMLQSKGLpkksGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELHRRNQLQPDP--AKTKALQT 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 647 HLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQK---EKNCFQNMVSK--EAYEELVRKSGNCQdDLTQAL 721
Cdd:pfam10174 234 VIEMKDTKISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQmevYKSHSKFMKNKidQLKQELSKKESELL-ALQTKL 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 722 EKLTQATSETKS----LNRSLQQTQERKAQLEDEIAA----YEERMKKLNMELKKLQGFQQQSEQ---EVHNFDKKLEEM 790
Cdd:pfam10174 313 ETLTNQNSDCKQhievLKESLTAKEQRAAILQTEVDAlrlrLEEKESFLNKKTKQLQDLTEEKSTlagEIRDLKDMLDVK 392
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 791 SNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRE------SLLADEKEPYSPPAKLTPKETCRHHRENDQIMNNVEQ 864
Cdd:pfam10174 393 ERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQTdssntdTALTTLEEALSEKERIIERLKEQREREDRERLEELES 472
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 1907190486 865 WAKEQKIANEKLGNKLREQVKYIAKLTGEKDH---LHNVMVHLQQENKKLKNEIEEKK 919
Cdd:pfam10174 473 LKKENKDLKEKVSALQPELTEKESSLIDLKEHassLASSGLKKDSKLKSLEIAVEQKK 530
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
202-476 |
9.32e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.04 E-value: 9.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 202 IQEHQETLKRLSEVWQKVSEQddlIQELRNKLACSNSLVLEREEALIKLQAEFASYTATHRHPPTSSEDC----EDITKI 277
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAQ---IEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATerrlEDLEEQ 846
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 278 LKHLQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREEtscvIEKKDKETVFLQYRLQDLQQ 357
Cdd:TIGR02168 847 IEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE----LRELESKRSELRRELEELRE 922
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 358 QYTESQklslkkdkllqdkdERLHELEKNLMQVQNSLREK-EAELEKLQCTTKELDTSLQEARQSTSKidceaLRAEIQK 436
Cdd:TIGR02168 923 KLAQLE--------------LRLEGLEVRIDNLQERLSEEySLTLEEAEALENKIEDDEEEARRRLKR-----LENKIKE 983
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1907190486 437 LK----DSLEEArEQLKVSDQNLTQSKEEAHLSASSLEDAHRKI 476
Cdd:TIGR02168 984 LGpvnlAAIEEY-EELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
377-780 |
9.73e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 40.03 E-value: 9.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 377 DERLHELEKNLMQVQNSLREKEAELEKLQ---CTTKELDTSLQEarqstskidCEALRAEIQKLKDSLEEAREQLkvsDQ 453
Cdd:TIGR01612 882 DDKLNDYEKKFNDSKSLINEINKSIEEEYqniNTLKKVDEYIKI---------CENTKESIEKFHNKQNILKEIL---NK 949
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 454 NLTQSKEeahlsASSLEDAHR-KIENCLLQDKQ------KEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLqeLSSELS 526
Cdd:TIGR01612 950 NIDTIKE-----SNLIEKSYKdKFDNTLIDKINeldkafKDASLNDYEAKNNELIKYFNDLKANLGKNKENM--LYHQFD 1022
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 527 EGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHStqVSEQKQRELTNSIRKLEEELLEIKGL----LEEKREQLKK----- 597
Cdd:TIGR01612 1023 EKEKATNDIEQKIEDANKNIPNIEIAIHTSIYN--IIDEIEKEIGKNIELLNKEILEEAEInitnFNEIKEKLKHynfdd 1100
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 598 -SKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEK---ENLQAELTSRSSHLDSSLNKYNSSQKViqelnAEIARQK 673
Cdd:TIGR01612 1101 fGKEENIKYADEINKIKDDIKNLDQKIDHHIKALEEIKkksENYIDEIKAQINDLEDVADKAISNDDP-----EEIEKKI 1175
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907190486 674 DSIMilqtqldSAIQKEKNCFQNMvskeayEELVRKSGNCQDDLTQALEKLTQATSETKSLNR-SLQQTQERKAQLEDEI 752
Cdd:TIGR01612 1176 ENIV-------TKIDKKKNIYDEI------KKLLNEIAEIEKDKTSLEEVKGINLSYGKNLGKlFLEKIDEEKKKSEHMI 1242
|
410 420
....*....|....*....|....*...
gi 1907190486 753 AAYEERMKKLNMELKKLQGFQQQSEQEV 780
Cdd:TIGR01612 1243 KAMEAYIEDLDEIKEKSPEIENEMGIEM 1270
|
|
| |
