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Conserved domains on  [gi|1907192637|ref|XP_036010305|]
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40S ribosomal protein S12-like [Mus musculus]

Protein Classification

ribosomal L7Ae/L30e/S12e/Gadd45 family protein( domain architecture ID 10472466)

ribosomal L7Ae/L30e/S12e/Gadd45 family protein belongs to a family of K-turn-binding proteins that are important in ribosome structure, the site-specific modification of RNA, and spliceosome assembly

CATH:  3.30.1330.30
PubMed:  24149842

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Ribosomal_L7Ae pfam01248
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from ...
16-106 8.52e-23

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118.


:

Pssm-ID: 426153 [Multi-domain]  Cd Length: 95  Bit Score: 84.95  E-value: 8.52e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907192637  16 TALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYAKLV-----EHQINLIKVDDNKKLGEWVGLCKId 90
Cdd:pfam01248   1 DAIYEVLKKALKTGKLVLGLKEVTKALERGEAKLVIIAEDCDPEEKVKLIpalckEKNVPYVKVPSKKELGEACGKKRP- 79
                          90
                  ....*....|....*.
gi 1907192637  91 REEKPWKVVGCSCVVV 106
Cdd:pfam01248  80 VSALAIKDEGDSKILV 95
 
Name Accession Description Interval E-value
Ribosomal_L7Ae pfam01248
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from ...
16-106 8.52e-23

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118.


Pssm-ID: 426153 [Multi-domain]  Cd Length: 95  Bit Score: 84.95  E-value: 8.52e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907192637  16 TALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYAKLV-----EHQINLIKVDDNKKLGEWVGLCKId 90
Cdd:pfam01248   1 DAIYEVLKKALKTGKLVLGLKEVTKALERGEAKLVIIAEDCDPEEKVKLIpalckEKNVPYVKVPSKKELGEACGKKRP- 79
                          90
                  ....*....|....*.
gi 1907192637  91 REEKPWKVVGCSCVVV 106
Cdd:pfam01248  80 VSALAIKDEGDSKILV 95
Rpl7Ae COG1358
Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure ...
12-116 1.43e-13

Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure and biogenesis];


Pssm-ID: 224277 [Multi-domain]  Cd Length: 116  Bit Score: 61.95  E-value: 1.43e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907192637  12 MDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYAKLV-----EHQINLIKVDDNKKLGEWVGL 86
Cdd:COG1358     9 EMLEQKALSLLGKASRAGKLKKGTNEVTKAIERGKAKLVVIAEDVSPEELVKHLpalceEKNVPYVYVGSKKELGKAVGK 88
                          90       100       110
                  ....*....|....*....|....*....|
gi 1907192637  87 CKIdreekpwKVVGCSCVVVKDYGKESQAK 116
Cdd:COG1358    89 EVR-------KVVAIVDKGFAKKLEDLVEK 111
 
Name Accession Description Interval E-value
Ribosomal_L7Ae pfam01248
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from ...
16-106 8.52e-23

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118.


Pssm-ID: 426153 [Multi-domain]  Cd Length: 95  Bit Score: 84.95  E-value: 8.52e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907192637  16 TALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYAKLV-----EHQINLIKVDDNKKLGEWVGLCKId 90
Cdd:pfam01248   1 DAIYEVLKKALKTGKLVLGLKEVTKALERGEAKLVIIAEDCDPEEKVKLIpalckEKNVPYVKVPSKKELGEACGKKRP- 79
                          90
                  ....*....|....*.
gi 1907192637  91 REEKPWKVVGCSCVVV 106
Cdd:pfam01248  80 VSALAIKDEGDSKILV 95
Rpl7Ae COG1358
Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure ...
12-116 1.43e-13

Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure and biogenesis];


Pssm-ID: 224277 [Multi-domain]  Cd Length: 116  Bit Score: 61.95  E-value: 1.43e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907192637  12 MDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYAKLV-----EHQINLIKVDDNKKLGEWVGL 86
Cdd:COG1358     9 EMLEQKALSLLGKASRAGKLKKGTNEVTKAIERGKAKLVVIAEDVSPEELVKHLpalceEKNVPYVYVGSKKELGKAVGK 88
                          90       100       110
                  ....*....|....*....|....*....|
gi 1907192637  87 CKIdreekpwKVVGCSCVVVKDYGKESQAK 116
Cdd:COG1358    89 EVR-------KVVAIVDKGFAKKLEDLVEK 111
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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