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Conserved domains on  [gi|1907070835|ref|XP_036010436|]
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proteoglycan 4 isoform X5 [Mus musculus]

Protein Classification

SO and HX domain-containing protein( domain architecture ID 10640906)

SO and HX domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
HX cd00094
Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. ...
912-1173 2.20e-39

Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.


:

Pssm-ID: 238046 [Multi-domain]  Cd Length: 194  Bit Score: 144.76  E-value: 2.20e-39
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  912 TNLCNGKPVDGLTTLRnGTLVAFRGHYFWMLNPFRPPSPPRRITEVW-GIPSPIDTVFTRCNcEGKTFFFKDSQYWRFTN 990
Cdd:cd00094      1 PDACDPLSFDAVTTLR-GELYFFKGRYFWRLSPGKPPGSPFLISSFWpSLPSPVDAAFERPD-TGKIYFFKGDKYWVYTG 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  991 DVVDPGYPKQIVK-GFGGLTGKIVAALSIAkykdRPESVYFFKrGGNIQQYTYKQEPMKKCTGRRPAinysvygeaaqvr 1069
Cdd:cd00094     79 KNLEPGYPKPISDlGFPPTVKQIDAALRWP----DNGKTYFFK-GDKYWRYDEKTQKMDPGYPKLIE------------- 140
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835 1070 rrrferavgpfqthtfrihysvpmrvsyqdkgflhnevkvsTMWRGFPNVVTSAitlpnIRKPDGYdYYAFSKDQYYNID 1149
Cdd:cd00094    141 -----------------------------------------TDFPGVPDKVDAA-----FRWLDGY-YYFFKGDQYWRFD 173
                          250       260
                   ....*....|....*....|....
gi 1907070835 1150 VPTRTARAITTRSGqtlSKIWYNC 1173
Cdd:cd00094    174 PRSKEVRVGYPLKI---SSDWLGC 194
PHA03247 super family cl33720
large tegument protein UL36; Provisional
402-722 1.81e-26

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 118.12  E-value: 1.81e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  402 RKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 481
Cdd:PHA03247  2653 RDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQAS 2732
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  482 PKEPEPTTPKePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKE----- 556
Cdd:PHA03247  2733 PALPAAPAPP-AVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADppaav 2811
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  557 --PEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKE----PESTTRKEPePTTPKEPEPTTPKEPEPTTPKEPE 630
Cdd:PHA03247  2812 laPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGgsvaPGGDVRRRP-PSRSPAAKPAAPARPPVRRLARPA 2890
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  631 PTTPKEPEPTTPKEPE-PTTPKEPEPTTPKEPEPtTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPT-----------TP 698
Cdd:PHA03247  2891 VSRSTESFALPPDQPErPPQPQAPPPPQPQPQPP-PPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSgavpqpwlgalVP 2969
                          330       340
                   ....*....|....*....|....*
gi 1907070835  699 KEPEPTTRKEPEPTTPKE-PEPTTP 722
Cdd:PHA03247  2970 GRVAVPRFRVPQPAPSREaPASSTP 2994
SO smart00201
Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from ...
26-68 5.67e-17

Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from vitronectin, that is a growth hormone-dependent serum factor with protease-inhibiting activity.


:

Pssm-ID: 197571  Cd Length: 43  Bit Score: 75.49  E-value: 5.67e-17
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 1907070835    26 DLSSCAGRCGEGYSRDATCNCDYNCQHYMECCPDFKRVCTTEL 68
Cdd:smart00201    1 AIGSCKGRCGESFNEGNACRCDALCLSYGDCCTDYESVCKKEV 43
SO smart00201
Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from ...
67-108 2.26e-16

Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from vitronectin, that is a growth hormone-dependent serum factor with protease-inhibiting activity.


:

Pssm-ID: 197571  Cd Length: 43  Bit Score: 73.56  E-value: 2.26e-16
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 1907070835    67 ELSCKGRCFESFARGRECDCDSQCKQYGKCCADYDSFCEEVH 108
Cdd:smart00201    2 IGSCKGRCGESFNEGNACRCDALCLSYGDCCTDYESVCKKEV 43
kgd super family cl36091
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
685-783 5.49e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


The actual alignment was detected with superfamily member PRK12270:

Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 41.03  E-value: 5.49e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  685 PEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPKKpeptttspkttTLKATTLAPKVTAPAEeiqnK 764
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPK-----------PAAAAAAAAAPAAPPA----A 102
                           90
                   ....*....|....*....
gi 1907070835  765 PEETTPASEDSDDSKTTLK 783
Cdd:PRK12270   103 AAAAAPAAAAVEDEVTPLR 121
 
Name Accession Description Interval E-value
HX cd00094
Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. ...
912-1173 2.20e-39

Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.


Pssm-ID: 238046 [Multi-domain]  Cd Length: 194  Bit Score: 144.76  E-value: 2.20e-39
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  912 TNLCNGKPVDGLTTLRnGTLVAFRGHYFWMLNPFRPPSPPRRITEVW-GIPSPIDTVFTRCNcEGKTFFFKDSQYWRFTN 990
Cdd:cd00094      1 PDACDPLSFDAVTTLR-GELYFFKGRYFWRLSPGKPPGSPFLISSFWpSLPSPVDAAFERPD-TGKIYFFKGDKYWVYTG 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  991 DVVDPGYPKQIVK-GFGGLTGKIVAALSIAkykdRPESVYFFKrGGNIQQYTYKQEPMKKCTGRRPAinysvygeaaqvr 1069
Cdd:cd00094     79 KNLEPGYPKPISDlGFPPTVKQIDAALRWP----DNGKTYFFK-GDKYWRYDEKTQKMDPGYPKLIE------------- 140
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835 1070 rrrferavgpfqthtfrihysvpmrvsyqdkgflhnevkvsTMWRGFPNVVTSAitlpnIRKPDGYdYYAFSKDQYYNID 1149
Cdd:cd00094    141 -----------------------------------------TDFPGVPDKVDAA-----FRWLDGY-YYFFKGDQYWRFD 173
                          250       260
                   ....*....|....*....|....
gi 1907070835 1150 VPTRTARAITTRSGqtlSKIWYNC 1173
Cdd:cd00094    174 PRSKEVRVGYPLKI---SSDWLGC 194
PHA03247 PHA03247
large tegument protein UL36; Provisional
402-722 1.81e-26

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 118.12  E-value: 1.81e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  402 RKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 481
Cdd:PHA03247  2653 RDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQAS 2732
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  482 PKEPEPTTPKePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKE----- 556
Cdd:PHA03247  2733 PALPAAPAPP-AVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADppaav 2811
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  557 --PEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKE----PESTTRKEPePTTPKEPEPTTPKEPEPTTPKEPE 630
Cdd:PHA03247  2812 laPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGgsvaPGGDVRRRP-PSRSPAAKPAAPARPPVRRLARPA 2890
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  631 PTTPKEPEPTTPKEPE-PTTPKEPEPTTPKEPEPtTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPT-----------TP 698
Cdd:PHA03247  2891 VSRSTESFALPPDQPErPPQPQAPPPPQPQPQPP-PPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSgavpqpwlgalVP 2969
                          330       340
                   ....*....|....*....|....*
gi 1907070835  699 KEPEPTTRKEPEPTTPKE-PEPTTP 722
Cdd:PHA03247  2970 GRVAVPRFRVPQPAPSREaPASSTP 2994
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
606-722 5.94e-19

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 84.33  E-value: 5.94e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  606 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEP 685
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070835  686 EPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTP 722
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
SO smart00201
Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from ...
26-68 5.67e-17

Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from vitronectin, that is a growth hormone-dependent serum factor with protease-inhibiting activity.


Pssm-ID: 197571  Cd Length: 43  Bit Score: 75.49  E-value: 5.67e-17
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 1907070835    26 DLSSCAGRCGEGYSRDATCNCDYNCQHYMECCPDFKRVCTTEL 68
Cdd:smart00201    1 AIGSCKGRCGESFNEGNACRCDALCLSYGDCCTDYESVCKKEV 43
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
399-772 8.60e-17

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 411408 [Multi-domain]  Cd Length: 557  Bit Score: 85.20  E-value: 8.60e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  399 STTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPkEPEPTTPKEPEPTTPKEPEPTTPKEPE 478
Cdd:NF033839   153 SGSSTKPETPQPENPEHQKPTTPAPDTKPSPQPEGKKPSVPDINQEKEKAKL-AVATYMSKILDDIQKHHLQKEKHRQIV 231
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  479 PTTPKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEP 557
Cdd:NF033839   232 ALIKELDELKKQALSEIDNVNtKVEIENTVHKIFADMDAVVTKFKKGLTQDTPKEPGNKKPSAPKPGMQPSPQPEKKEVK 311
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  558 EPTTLKEPEpTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPTTPKE 636
Cdd:NF033839   312 PEPETPKPE-VKPQLEKPKPEVKPQPEKPKPEVKPQLETPKPEVKPQPEKPKPEvKPQPEKPKPEVKPQPETPKPEVKPQ 390
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  637 PEPTTPK-EPEPTTPKEPEPTTPKEPEPTTPKKPEPTTP-KEPEPTTPKEPEPTTPKEPEPTTPKEPE-PTTRKEPEPTT 713
Cdd:NF033839   391 PEKPKPEvKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPeVKPQPEKPKPEVKPQPEKPKPEVKPQPEtPKPEVKPQPEK 470
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070835  714 PKEPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQNKPEETTPAS 772
Cdd:NF033839   471 PKPEVKPQPEKPKPDNSKPQADDKKPSTPNNLSKDKQPSNQASTNEKATNKPKKSLPST 529
SO smart00201
Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from ...
67-108 2.26e-16

Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from vitronectin, that is a growth hormone-dependent serum factor with protease-inhibiting activity.


Pssm-ID: 197571  Cd Length: 43  Bit Score: 73.56  E-value: 2.26e-16
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 1907070835    67 ELSCKGRCFESFARGRECDCDSQCKQYGKCCADYDSFCEEVH 108
Cdd:smart00201    2 IGSCKGRCGESFNEGNACRCDALCLSYGDCCTDYESVCKKEV 43
Somatomedin_B pfam01033
Somatomedin B domain;
69-106 7.60e-16

Somatomedin B domain;


Pssm-ID: 426004  Cd Length: 41  Bit Score: 72.01  E-value: 7.60e-16
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 1907070835   69 SCKGRCFESFARGRE-CDCDSQCKQYGKCCADYDSFCEE 106
Cdd:pfam01033    2 SCKGRCGEGFDRGRSlCQCDDDCVSYGDCCPDYESLCLG 40
Somatomedin_B pfam01033
Somatomedin B domain;
29-67 1.64e-13

Somatomedin B domain;


Pssm-ID: 426004  Cd Length: 41  Bit Score: 65.46  E-value: 1.64e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 1907070835   29 SCAGRCGEGYSR-DATCNCDYNCQHYMECCPDFKRVCTTE 67
Cdd:pfam01033    2 SCKGRCGEGFDRgRSLCQCDDDCVSYGDCCPDYESLCLGE 41
HX smart00120
Hemopexin-like repeats; Hemopexin is a heme-binding protein that transports heme to the liver. ...
964-1008 3.29e-12

Hemopexin-like repeats; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs).


Pssm-ID: 214524 [Multi-domain]  Cd Length: 45  Bit Score: 61.87  E-value: 3.29e-12
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*
gi 1907070835   964 IDTVFTRCNceGKTFFFKDSQYWRFTNDVVDPGYPKQIVKGFGGL 1008
Cdd:smart00120    1 IDAAFELRD--GKTYFFKGDKYWRFDPKRVDPGYPKLISSFFPGL 43
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
468-841 3.78e-11

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 411408 [Multi-domain]  Cd Length: 557  Bit Score: 67.10  E-value: 3.78e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  468 EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP--KEPEPTTPKEPEPTTPKEPEPTTLKEPEPTT 545
Cdd:NF033839   158 KPETPQPENPEHQKPTTPAPDTKPSPQPEGKKPSVPDINQEKEKAKLavATYMSKILDDIQKHHLQKEKHRQIVALIKEL 237
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  546 PKEPEPTTPKEPEPTTLKEPEPTTPK---EPEPTTLKEPEPTTPKEPEPTTTKEPES-TTRKEPEPTTPKEPEPTTPKEP 621
Cdd:NF033839   238 DELKKQALSEIDNVNTKVEIENTVHKifaDMDAVVTKFKKGLTQDTPKEPGNKKPSApKPGMQPSPQPEKKEVKPEPETP 317
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  622 EPTTPKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK-KPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 699
Cdd:NF033839   318 KPEVKPQLEKPKPEvKPQPEKPKPEVKPQLETPKPEVKPQPEKPKPEvKPQPEKPKPEVKPQPETPKPEVKPQPEKPKPE 397
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  700 -EPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTaPAEEIQNKPEETTPASEDSDDS 778
Cdd:NF033839   398 vKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVK-PQPETPKPEVKPQPEKPKPEVK 476
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907070835  779 KTTLKPQKPTKAPKPTKKPTKAPKKPTSTKKPKTPKTRKPKTTPSPLKTTSATPELNTTPLEV 841
Cdd:NF033839   477 PQPEKPKPDNSKPQADDKKPSTPNNLSKDKQPSNQASTNEKATNKPKKSLPSTGSISNLALEI 539
Hemopexin pfam00045
Hemopexin; Hemopexin is a heme-binding protein that transports heme to the liver. ...
964-1001 1.56e-09

Hemopexin; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metallopeptidases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metallopeptidases (TIMPs).


Pssm-ID: 395000 [Multi-domain]  Cd Length: 44  Bit Score: 54.49  E-value: 1.56e-09
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 1907070835  964 IDTVFTRCNceGKTFFFKDSQYWRFTNDVVDPGYPKQI 1001
Cdd:pfam00045    1 IDAAFEDRD--GKTYFFKGRKYWRFDPQRVEPGYPKLI 36
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
410-683 2.03e-08

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 58.80  E-value: 2.03e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  410 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTtlKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 489
Cdd:NF033845   543 PKDPTPGPPVDPEPSPEPEPEPTPDPEPSPD--PDPEPSPDPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDSDS 620
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  490 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTT 569
Cdd:NF033845   621 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 700
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  570 PKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 649
Cdd:NF033845   701 SSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 780
                          250       260       270
                   ....*....|....*....|....*....|....
gi 1907070835  650 PKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPK 683
Cdd:NF033845   781 DSDSDSDSDSDSDSDSDSRVTPPNNEQKAPSNPK 814
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
426-699 4.17e-08

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 57.65  E-value: 4.17e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  426 PKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPttpkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 505
Cdd:NF033845   543 PKDPTPGPPVDPEPSPEPEPEPTPDPEPSPDPDPEPSP----DPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDS 618
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  506 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTT 585
Cdd:NF033845   619 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 698
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  586 PKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 665
Cdd:NF033845   699 SDSSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 778
                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 1907070835  666 PKKPEPTTPKEPEPTTPKEPEPTTP--KEPEPTTPK 699
Cdd:NF033845   779 DSDSDSDSDSDSDSDSDSDSRVTPPnnEQKAPSNPK 814
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
450-723 4.74e-08

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 57.65  E-value: 4.74e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  450 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPttpkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 529
Cdd:NF033845   543 PKDPTPGPPVDPEPSPEPEPEPTPDPEPSPDPDPEPSP----DPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDS 618
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  530 PKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTT 609
Cdd:NF033845   619 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 698
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  610 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTT 689
Cdd:NF033845   699 SDSSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 778
                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 1907070835  690 PKEPEPTTPKEPEPTTRKEPEPTTP--KEPEPTTPK 723
Cdd:NF033845   779 DSDSDSDSDSDSDSDSDSDSRVTPPnnEQKAPSNPK 814
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
418-691 5.16e-08

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 57.26  E-value: 5.16e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  418 PKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPttpkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 497
Cdd:NF033845   543 PKDPTPGPPVDPEPSPEPEPEPTPDPEPSPDPDPEPSP----DPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDS 618
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  498 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTT 577
Cdd:NF033845   619 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 698
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  578 LKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 657
Cdd:NF033845   699 SDSSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 778
                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 1907070835  658 PKEPEPTTPKKPEPTTPKEPEPTTP--KEPEPTTPK 691
Cdd:NF033845   779 DSDSDSDSDSDSDSDSDSDSRVTPPnnEQKAPSNPK 814
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
458-731 8.09e-08

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 56.88  E-value: 8.09e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  458 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPttpkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 537
Cdd:NF033845   543 PKDPTPGPPVDPEPSPEPEPEPTPDPEPSPDPDPEPSP----DPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDS 618
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  538 LKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTT 617
Cdd:NF033845   619 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 698
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  618 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 697
Cdd:NF033845   699 SDSSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 778
                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 1907070835  698 PKEPEPTTRKEPEPTTPKEPEPTTP--KEPEPTTPK 731
Cdd:NF033845   779 DSDSDSDSDSDSDSDSDSDSRVTPPnnEQKAPSNPK 814
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
403-675 1.12e-07

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 56.11  E-value: 1.12e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  403 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPttlkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 482
Cdd:NF033845   544 KDPTPGPPVDPEPSPEPEPEPTPDPEPSPDPDPEPSP----DPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDSD 619
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  483 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTL 562
Cdd:NF033845   620 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 699
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  563 KEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 642
Cdd:NF033845   700 DSSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 779
                          250       260       270
                   ....*....|....*....|....*....|....*
gi 1907070835  643 KEPEPTTPKEPEPTTPKEPEPTTPKKPE--PTTPK 675
Cdd:NF033845   780 SDSDSDSDSDSDSDSDSDSRVTPPNNEQkaPSNPK 814
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
522-784 5.47e-07

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 54.18  E-value: 5.47e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  522 PKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPttlkEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTT 601
Cdd:NF033845   543 PKDPTPGPPVDPEPSPEPEPEPTPDPEPSPDPDPEPSP----DPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDS 618
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  602 RKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTT 681
Cdd:NF033845   619 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 698
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  682 PKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEI 761
Cdd:NF033845   699 SDSSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 778
                          250       260
                   ....*....|....*....|....
gi 1907070835  762 QNKPEETTPASEDSD-DSKTTLKP 784
Cdd:NF033845   779 DSDSDSDSDSDSDSDsDSDSRVTP 802
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
443-715 9.51e-07

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 53.02  E-value: 9.51e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  443 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTtpKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 522
Cdd:NF033845   544 KDPTPGPPVDPEPSPEPEPEPTPDPEPSPD--PDPEPSPDPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDSDSD 621
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  523 KEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTR 602
Cdd:NF033845   622 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 701
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  603 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTP 682
Cdd:NF033845   702 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 781
                          250       260       270
                   ....*....|....*....|....*....|...
gi 1907070835  683 KEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPK 715
Cdd:NF033845   782 SDSDSDSDSDSDSDSDSRVTPPNNEQKAPSNPK 814
TonB COG0810
Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope ...
606-732 6.20e-06

Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 223880 [Multi-domain]  Cd Length: 244  Bit Score: 49.01  E-value: 6.20e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  606 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPkepepttPKKPEPTTPKEPEPTTPKEP 685
Cdd:COG0810     35 ELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEK-------PKPEKKPKKPKPKPKPKPKP 107
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1907070835  686 EPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPKK 732
Cdd:COG0810    108 KPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSAS 154
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
587-731 5.52e-05

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 411407 [Multi-domain]  Cd Length: 684  Bit Score: 47.31  E-value: 5.52e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  587 KEPEPTTTKEPESTTRKEPEPTTPKEPEPTtpKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEpEPTTPKEPEPTTp 666
Cdd:NF033838   351 KEAELELVKEEAKEPRNEEKIKQAKAKVES--KKAEATRLEKIKTDRKKAEEEAKRKAAEEDKVKE-KPAEQPQPAPAP- 426
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070835  667 kKPEPTTPKEPEPT-TPKEPEPTTPKEPEPTTPKEPEpttrkEPEPTTPKEPePTTPKEPEPTTPK 731
Cdd:NF033838   427 -QPEKPAPKPEKPAeQPKAEKPADQQAEEDYARRSEE-----EYNRLTQQQP-PKTEKPAQPSTPK 485
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
435-707 1.46e-04

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 411407 [Multi-domain]  Cd Length: 684  Bit Score: 46.16  E-value: 1.46e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  435 KEPEPTTLKEPEptTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE-------PEPTTPKEPEpTTPKEPEPTTPK 507
Cdd:NF033838   216 KKAEATRLEKIK--TDREKAEEEAKRRADAKLKEAVEKNVATSEQDKPKRrakrgvlGEPATPDKKE-NDAKSSDSSVGE 292
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  508 EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPE----PT-TPKEPE------PTTPKEPEPTTLKEpEPTTPKEPEPt 576
Cdd:NF033838   293 ETLPSPSLKPEKKVAEAEKKVEEAKKKAKDQKEEDrrnyPTnTYKTLEleiaesDVKVKEAELELVKE-EAKEPRNEEK- 370
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  577 tLKEP-EPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEpEPTTPKEPEPTtpkePEPTTPKePEPTTPKEpep 655
Cdd:NF033838   371 -IKQAkAKVESKKAEATRLEKIKTDRKKAEEEAKRKAAEEDKVKE-KPAEQPQPAPA----PQPEKPA-PKPEKPAE--- 440
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1907070835  656 tTPKEPEPTTPKKPEPTTPKEPEpttpkEPEPTTPKEPePTTPKEPEPTTRK 707
Cdd:NF033838   441 -QPKAEKPADQQAEEDYARRSEE-----EYNRLTQQQP-PKTEKPAQPSTPK 485
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
560-620 3.51e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 44.12  E-value: 3.51e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  560 TTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKE 620
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
685-783 5.49e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 41.03  E-value: 5.49e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  685 PEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPKKpeptttspkttTLKATTLAPKVTAPAEeiqnK 764
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPK-----------PAAAAAAAAAPAAPPA----A 102
                           90
                   ....*....|....*....
gi 1907070835  765 PEETTPASEDSDDSKTTLK 783
Cdd:PRK12270   103 AAAAAPAAAAVEDEVTPLR 121
 
Name Accession Description Interval E-value
HX cd00094
Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. ...
912-1173 2.20e-39

Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.


Pssm-ID: 238046 [Multi-domain]  Cd Length: 194  Bit Score: 144.76  E-value: 2.20e-39
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  912 TNLCNGKPVDGLTTLRnGTLVAFRGHYFWMLNPFRPPSPPRRITEVW-GIPSPIDTVFTRCNcEGKTFFFKDSQYWRFTN 990
Cdd:cd00094      1 PDACDPLSFDAVTTLR-GELYFFKGRYFWRLSPGKPPGSPFLISSFWpSLPSPVDAAFERPD-TGKIYFFKGDKYWVYTG 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  991 DVVDPGYPKQIVK-GFGGLTGKIVAALSIAkykdRPESVYFFKrGGNIQQYTYKQEPMKKCTGRRPAinysvygeaaqvr 1069
Cdd:cd00094     79 KNLEPGYPKPISDlGFPPTVKQIDAALRWP----DNGKTYFFK-GDKYWRYDEKTQKMDPGYPKLIE------------- 140
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835 1070 rrrferavgpfqthtfrihysvpmrvsyqdkgflhnevkvsTMWRGFPNVVTSAitlpnIRKPDGYdYYAFSKDQYYNID 1149
Cdd:cd00094    141 -----------------------------------------TDFPGVPDKVDAA-----FRWLDGY-YYFFKGDQYWRFD 173
                          250       260
                   ....*....|....*....|....
gi 1907070835 1150 VPTRTARAITTRSGqtlSKIWYNC 1173
Cdd:cd00094    174 PRSKEVRVGYPLKI---SSDWLGC 194
PHA03247 PHA03247
large tegument protein UL36; Provisional
402-722 1.81e-26

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 118.12  E-value: 1.81e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  402 RKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 481
Cdd:PHA03247  2653 RDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQAS 2732
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  482 PKEPEPTTPKePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKE----- 556
Cdd:PHA03247  2733 PALPAAPAPP-AVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADppaav 2811
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  557 --PEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKE----PESTTRKEPePTTPKEPEPTTPKEPEPTTPKEPE 630
Cdd:PHA03247  2812 laPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGgsvaPGGDVRRRP-PSRSPAAKPAAPARPPVRRLARPA 2890
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  631 PTTPKEPEPTTPKEPE-PTTPKEPEPTTPKEPEPtTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPT-----------TP 698
Cdd:PHA03247  2891 VSRSTESFALPPDQPErPPQPQAPPPPQPQPQPP-PPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSgavpqpwlgalVP 2969
                          330       340
                   ....*....|....*....|....*
gi 1907070835  699 KEPEPTTRKEPEPTTPKE-PEPTTP 722
Cdd:PHA03247  2970 GRVAVPRFRVPQPAPSREaPASSTP 2994
PHA03247 PHA03247
large tegument protein UL36; Provisional
405-727 1.21e-25

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 115.42  E-value: 1.21e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  405 PEPTTPKEP--EPTTPKEPEPTTPKEPEPTTPKEPEPTtlkePEPTTPKEPEPTTPKEPEPTTPKE-PEPTTPKEPEPTT 481
Cdd:PHA03247  2593 PQSARPRAPvdDRGDPRGPAPPSPLPPDTHAPDPPPPS----PSPAANEPDPHPPPTVPPPERPRDdPAPGRVSRPRRAR 2668
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  482 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTT 561
Cdd:PHA03247  2669 RLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGP 2748
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  562 LKEPEPTTPKEPePTTLKEPEPTTPKEP---EPTTTKEPESTTRKEPEPTTPKEPEPTTPKEP-EPTTPKEPEPTTPKEP 637
Cdd:PHA03247  2749 ATPGGPARPARP-PTTAGPPAPAPPAAPaagPPRRLTRPAVASLSESRESLPSPWDPADPPAAvLAPAAALPPAASPAGP 2827
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  638 EPTTPKEPEPTTPKEPEPTTPKEP--------------EPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 703
Cdd:PHA03247  2828 LPPPTSAQPTAPPPPPGPPPPSLPlggsvapggdvrrrPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPER 2907
                          330       340
                   ....*....|....*....|....
gi 1907070835  704 ttrkEPEPTTPKEPEPTTPKEPEP 727
Cdd:PHA03247  2908 ----PPQPQAPPPPQPQPQPPPPP 2927
PHA03247 PHA03247
large tegument protein UL36; Provisional
405-730 2.80e-23

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 107.72  E-value: 2.80e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  405 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPePTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 484
Cdd:PHA03247  2712 PHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARP-PTTAGPPAPAPPAAPAAGPPRRLTRPAVAS 2790
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  485 PEPTTPKEPEPTTPKEPE----PTTPKEPEPTTPK--EPEPTTPKEPEPTTPKEPEPTTL------------KEPEPTTP 546
Cdd:PHA03247  2791 LSESRESLPSPWDPADPPaavlAPAAALPPAASPAgpLPPPTSAQPTAPPPPPGPPPPSLplggsvapggdvRRRPPSRS 2870
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  547 KEPEPTTPKEPEPTTLKEPEPTTPKEP--EPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPT 624
Cdd:PHA03247  2871 PAAKPAAPARPPVRRLARPAVSRSTESfaLPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPA 2950
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  625 TPKEPEPTTPKEPE-PTTPKEPEPTTPKEPEPTTPKE-PEPTTPKKPEPTTPK--------------EPEPTTPKEP-EP 687
Cdd:PHA03247  2951 GAGEPSGAVPQPWLgALVPGRVAVPRFRVPQPAPSREaPASSTPPLTGHSLSRvsswasslalheetDPPPVSLKQTlWP 3030
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*
gi 1907070835  688 TTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTP--KEPEPTTP 730
Cdd:PHA03247  3031 PDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDPfaHEPDPATP 3075
PHA03247 PHA03247
large tegument protein UL36; Provisional
402-908 1.08e-22

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 105.79  E-value: 1.08e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  402 RKEPEPTTPKEPEPTtpKEPEPTTPKEPE-PTTPKEPEPTTLKEPEPTTPKEPEPTT----PKEPEPTTPKEPEPTTPKE 476
Cdd:PHA03247  2481 RRPAEARFPFAAGAA--PDPGGGGPPDPDaPPAPSRLAPAILPDEPVGEPVHPRMLTwirgLEELASDDAGDPPPPLPPA 2558
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  477 PEPTTPKEPEPTTPKEPEPTTP----KEPEPTTPkePEPTTPKEP--EPTTPKEPEPTTPKEPEPTTLKEPEPTtpkePE 550
Cdd:PHA03247  2559 APPAAPDRSVPPPRPAPRPSEPavtsRARRPDAP--PQSARPRAPvdDRGDPRGPAPPSPLPPDTHAPDPPPPS----PS 2632
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  551 PTTPKEPEPTTLKEPEPTTPKE-PEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEP 629
Cdd:PHA03247  2633 PAANEPDPHPPPTVPPPERPRDdPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAP 2712
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  630 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKePEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEP 709
Cdd:PHA03247  2713 HALVSATPLPPGPAAARQASPALPAAPAPP-AVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASL 2791
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  710 EPTTPKEPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQNKPEETTPASEDSDDSKTTLKPqkptk 789
Cdd:PHA03247  2792 SESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRP----- 2866
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  790 apkptkkptkapkkptstkkPKTPKTRKPKTTPSPLKTTSATPELNTTPLEVMLPTTTIPKQtPNPETAEVNPDHEDADG 869
Cdd:PHA03247  2867 --------------------PSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERP-PQPQAPPPPQPQPQPPP 2925
                          490       500       510
                   ....*....|....*....|....*....|....*....
gi 1907070835  870 GEGEKPLIPGPPVLFPTAIPGTDLLAGRLNQGININPML 908
Cdd:PHA03247  2926 PPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWL 2964
PHA03247 PHA03247
large tegument protein UL36; Provisional
371-772 2.07e-21

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 101.55  E-value: 2.07e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  371 KEPEPTTPKEPEPTTTKEPEPTTTKEP---------------ESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP- 434
Cdd:PHA03247  2502 GPPDPDAPPAPSRLAPAILPDEPVGEPvhprmltwirgleelASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPa 2581
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  435 ---KEPEPTTlkEPEPTTPKEP--EPTTPKEPEPTTPKEPEPTTPKEPEPTtpKEPEPTTPKEPEPTTPKEPEP------ 503
Cdd:PHA03247  2582 vtsRARRPDA--PPQSARPRAPvdDRGDPRGPAPPSPLPPDTHAPDPPPPS--PSPAANEPDPHPPPTVPPPERprddpa 2657
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  504 --------------------TTPKEPEP-------------TTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPE 550
Cdd:PHA03247  2658 pgrvsrprrarrlgraaqasSPPQRPRRraarptvgsltslADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPA 2737
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  551 PTTPKEPEPTTLKEPEPTTPKEPePTTLKEPEPTTPKEP---EPTTTKEPESTTRKEPEPTTPKEPEPT---------TP 618
Cdd:PHA03247  2738 APAPPAVPAGPATPGGPARPARP-PTTAGPPAPAPPAAPaagPPRRLTRPAVASLSESRESLPSPWDPAdppaavlapAA 2816
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  619 KEPEPTTPK--EPEPTTPKEPEPTTPKEPEPTT--------------------PKEPEPTTPKEPEPTTPKKPEPTTPKE 676
Cdd:PHA03247  2817 ALPPAASPAgpLPPPTSAQPTAPPPPPGPPPPSlplggsvapggdvrrrppsrSPAAKPAAPARPPVRRLARPAVSRSTE 2896
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  677 PEPTTPKEPEPttPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTA 756
Cdd:PHA03247  2897 SFALPPDQPER--PPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAV 2974
                          490
                   ....*....|....*..
gi 1907070835  757 PAEEI-QNKPEETTPAS 772
Cdd:PHA03247  2975 PRFRVpQPAPSREAPAS 2991
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
606-722 5.94e-19

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 84.33  E-value: 5.94e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  606 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEP 685
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070835  686 EPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTP 722
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
422-535 6.60e-19

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 83.95  E-value: 6.60e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  422 EPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 501
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....
gi 1907070835  502 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 535
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEP 120
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
414-530 6.60e-19

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 83.95  E-value: 6.60e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  414 EPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 493
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070835  494 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 530
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
406-522 6.60e-19

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 83.95  E-value: 6.60e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  406 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 485
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070835  486 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 522
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
614-730 6.73e-19

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 83.95  E-value: 6.73e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  614 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEP 693
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070835  694 EPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTP 730
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
446-559 6.80e-19

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 83.95  E-value: 6.80e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  446 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 525
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....
gi 1907070835  526 EPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEP 559
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEP 120
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
462-575 3.40e-18

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 82.02  E-value: 3.40e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  462 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEP 541
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....
gi 1907070835  542 EPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEP 575
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEP 120
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
438-554 4.77e-18

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 81.64  E-value: 4.77e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  438 EPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 517
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070835  518 EPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTP 554
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
605-714 6.01e-18

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 81.25  E-value: 6.01e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  605 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKE 684
Cdd:pfam02389   14 QEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVPEPCHPKA 93
                           90       100       110
                   ....*....|....*....|....*....|
gi 1907070835  685 PEPTTPKEPEPTTPKEPEPTTRKEPEPTTP 714
Cdd:pfam02389   94 PEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
405-514 6.69e-18

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 81.25  E-value: 6.69e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  405 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 484
Cdd:pfam02389   14 QEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVPEPCHPKA 93
                           90       100       110
                   ....*....|....*....|....*....|
gi 1907070835  485 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 514
Cdd:pfam02389   94 PEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
582-698 6.89e-18

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 81.25  E-value: 6.89e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  582 EPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 661
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070835  662 EPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 698
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
478-591 1.70e-17

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 80.10  E-value: 1.70e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  478 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEP 557
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....
gi 1907070835  558 EPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEP 591
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEP 120
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
574-690 2.81e-17

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 79.33  E-value: 2.81e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  574 EPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 653
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070835  654 EPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTP 690
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
SO smart00201
Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from ...
26-68 5.67e-17

Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from vitronectin, that is a growth hormone-dependent serum factor with protease-inhibiting activity.


Pssm-ID: 197571  Cd Length: 43  Bit Score: 75.49  E-value: 5.67e-17
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 1907070835    26 DLSSCAGRCGEGYSRDATCNCDYNCQHYMECCPDFKRVCTTEL 68
Cdd:smart00201    1 AIGSCKGRCGESFNEGNACRCDALCLSYGDCCTDYESVCKKEV 43
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
451-570 8.38e-17

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 78.17  E-value: 8.38e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  451 KEPEPTTPkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 530
Cdd:pfam02389    6 KQPCQPPP--QEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSP 83
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1907070835  531 KEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTP 570
Cdd:pfam02389   84 KVPEPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
399-772 8.60e-17

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 411408 [Multi-domain]  Cd Length: 557  Bit Score: 85.20  E-value: 8.60e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  399 STTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPkEPEPTTPKEPEPTTPKEPEPTTPKEPE 478
Cdd:NF033839   153 SGSSTKPETPQPENPEHQKPTTPAPDTKPSPQPEGKKPSVPDINQEKEKAKL-AVATYMSKILDDIQKHHLQKEKHRQIV 231
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  479 PTTPKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEP 557
Cdd:NF033839   232 ALIKELDELKKQALSEIDNVNtKVEIENTVHKIFADMDAVVTKFKKGLTQDTPKEPGNKKPSAPKPGMQPSPQPEKKEVK 311
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  558 EPTTLKEPEpTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPTTPKE 636
Cdd:NF033839   312 PEPETPKPE-VKPQLEKPKPEVKPQPEKPKPEVKPQLETPKPEVKPQPEKPKPEvKPQPEKPKPEVKPQPETPKPEVKPQ 390
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  637 PEPTTPK-EPEPTTPKEPEPTTPKEPEPTTPKKPEPTTP-KEPEPTTPKEPEPTTPKEPEPTTPKEPE-PTTRKEPEPTT 713
Cdd:NF033839   391 PEKPKPEvKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPeVKPQPEKPKPEVKPQPEKPKPEVKPQPEtPKPEVKPQPEK 470
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070835  714 PKEPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQNKPEETTPAS 772
Cdd:NF033839   471 PKPEVKPQPEKPKPDNSKPQADDKKPSTPNNLSKDKQPSNQASTNEKATNKPKKSLPST 529
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
427-546 8.80e-17

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 78.17  E-value: 8.80e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  427 KEPEPTTPKEPEPTTLKepEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 506
Cdd:pfam02389    6 KQPCQPPPQEPCVPTTK--EPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSP 83
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1907070835  507 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTP 546
Cdd:pfam02389   84 KVPEPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
486-598 9.42e-17

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 77.79  E-value: 9.42e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  486 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEP 565
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|...
gi 1907070835  566 EPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPE 598
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPE 119
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
542-658 1.02e-16

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 77.79  E-value: 1.02e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  542 EPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEP 621
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070835  622 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 658
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
558-674 1.40e-16

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 77.40  E-value: 1.40e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  558 EPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 637
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070835  638 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTP 674
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
SO smart00201
Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from ...
67-108 2.26e-16

Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from vitronectin, that is a growth hormone-dependent serum factor with protease-inhibiting activity.


Pssm-ID: 197571  Cd Length: 43  Bit Score: 73.56  E-value: 2.26e-16
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 1907070835    67 ELSCKGRCFESFARGRECDCDSQCKQYGKCCADYDSFCEEVH 108
Cdd:smart00201    2 IGSCKGRCGESFNEGNACRCDALCLSYGDCCTDYESVCKKEV 43
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
467-586 4.18e-16

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 76.25  E-value: 4.18e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  467 KEPEPTTPkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTP 546
Cdd:pfam02389    6 KQPCQPPP--QEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSP 83
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1907070835  547 KEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTP 586
Cdd:pfam02389   84 KVPEPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Somatomedin_B pfam01033
Somatomedin B domain;
69-106 7.60e-16

Somatomedin B domain;


Pssm-ID: 426004  Cd Length: 41  Bit Score: 72.01  E-value: 7.60e-16
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 1907070835   69 SCKGRCFESFARGRE-CDCDSQCKQYGKCCADYDSFCEE 106
Cdd:pfam01033    2 SCKGRCGEGFDRGRSlCQCDDDCVSYGDCCPDYESLCLG 40
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
502-618 8.32e-16

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 75.09  E-value: 8.32e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  502 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEP 581
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070835  582 EPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTP 618
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
518-634 9.17e-16

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 75.09  E-value: 9.17e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  518 EPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEP 597
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070835  598 ESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 634
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
526-642 9.35e-16

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 75.09  E-value: 9.35e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  526 EPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEP 605
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070835  606 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 642
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
534-650 1.03e-15

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 75.09  E-value: 1.03e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  534 EPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEP 613
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070835  614 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 650
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
510-626 1.70e-15

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 74.32  E-value: 1.70e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  510 EPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEP 589
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070835  590 EPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTP 626
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
PHA03247 PHA03247
large tegument protein UL36; Provisional
246-698 2.30e-15

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 81.91  E-value: 2.30e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  246 SPKTTAAKPVTPKPSLAPNSETSKEASLASNKETTVETKETTATNKQSSASKKKTTSAKETRSAEKTSDKDVEPTSTTPK 325
Cdd:PHA03247  2630 SPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPE 2709
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  326 nSAPTTTKKPVTTTKEPVPTTPKEPEPTTPKEPPPTTKKPEPTTPKEPEPTTPKEPEPTTTKEPEPTTTKEPESTTRKEP 405
Cdd:PHA03247  2710 -PAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAV 2788
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  406 EPTTPKEPEPTTPKEPEPTTP--KEPEPTTPKEPEPTTLkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP----EP 479
Cdd:PHA03247  2789 ASLSESRESLPSPWDPADPPAavLAPAAALPPAASPAGP-LPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDvrrrPP 2867
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  480 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPttpkEPEPTTPKEPEPttlkepeptTPKEPEPTTPKEPEP 559
Cdd:PHA03247  2868 SRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPER----PPQPQAPPPPQP---------QPQPPPPPQPQPPPP 2934
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  560 TtlkEPEPTTPKEPEPTTLKEPEPtTPKEPEP----TTTKEPESTTRKEPEPTTPKE-PEPTTPKEPEPTTPK------- 627
Cdd:PHA03247  2935 P---PPRPQPPLAPTTDPAGAGEP-SGAVPQPwlgaLVPGRVAVPRFRVPQPAPSREaPASSTPPLTGHSLSRvsswass 3010
                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907070835  628 ---EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTpKEPEPTTPKEPEPTTP 698
Cdd:PHA03247  3011 lalHEETDPPPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDPFA-HEPDPATPEAGARESP 3083
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
384-726 2.31e-15

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 81.27  E-value: 2.31e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  384 TTTKEPEPTTTKEPEStTRKEPEPTTPKEPEPTtpKEPEPTTPKEPE--PTTPKEPE-PTTLKEP-EPTTPKEPE-PTTP 458
Cdd:PTZ00449   527 KEGEEGEHEDSKESDE-PKEGGKPGETKEGEVG--KKPGPAKEHKPSkiPTLSKKPEfPKDPKHPkDPEEPKKPKrPRSA 603
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  459 KEP-EPTTPKEPE----PTTPKEPE-PTTPKEP----EPTTPKEPE-PTTPKEPE-PTTPKEPEPTTPKEPEPTTPKEPE 526
Cdd:PTZ00449   604 QRPtRPKSPKLPElldiPKSPKRPEsPKSPKRPpppqRPSSPERPEgPKIIKSPKpPKSPKPPFDPKFKEKFYDDYLDAA 683
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  527 PTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPePTTPKEPEP--TTLKEPEPTTPKEPEPTTTKEPESTTRKE 604
Cdd:PTZ00449   684 AKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLP-PKLPRDEEFpfEPIGDPDAEQPDDIEFFTPPEEERTFFHE 762
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  605 PEPTTP---------KEP----EPTTPKEP--EPTTPKEPEPTTPKEpEPTTPKEPE-------PTTPKEPEP-TTPKEP 661
Cdd:PTZ00449   763 TPADTPlpdilaeefKEEdihaETGEPDEAmkRPDSPSEHEDKPPGD-HPSLPKKRHrldglalSTTDLESDAgRIAKDA 841
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070835  662 --EPTTPKKPEP----TTPKEPEPTTPK------EPEPTTPKEPEPTTPKEPEPTT--RKEPEPTTPKEPEPTTPKEPE 726
Cdd:PTZ00449   842 sgKIVKLKRSKSfddlTTVEEAEEMGAEarkivvDDDGTEADDEDTHPPEEKHKSEvrRRRPPKKPSKPKKPSKPKKPK 920
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
403-498 3.52e-15

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 73.55  E-value: 3.52e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  403 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 482
Cdd:pfam02389   28 KVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVPEPCHPKAPEPCHPKVPEPCYP 107
                           90
                   ....*....|....*.
gi 1907070835  483 KEPEPTTPKEPEPTTP 498
Cdd:pfam02389  108 KAPEPCQPKVPEPCPS 123
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
407-808 1.74e-14

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 78.58  E-value: 1.74e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  407 PTTPKEPEPTTP-KEPEPTTPKEPEPTTPKE-PEPTTLKEPEPTTPKEPE--PTTPKEPE-PTTPKEP-EPTTPKEPE-P 479
Cdd:PTZ00449   521 PKAPGDKEGEEGeHEDSKESDEPKEGGKPGEtKEGEVGKKPGPAKEHKPSkiPTLSKKPEfPKDPKHPkDPEEPKKPKrP 600
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  480 TTPKEP-EPTTPKEPE----PTTPKEPE-PTTPKEPEPTTpkepEPTTPKEPE-PTTPKEPEPttlkepePTTPKEPEPT 552
Cdd:PTZ00449   601 RSAQRPtRPKSPKLPElldiPKSPKRPEsPKSPKRPPPPQ----RPSSPERPEgPKIIKSPKP-------PKSPKPPFDP 669
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  553 TPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPePTTPKEPEptTPKEPepttPKEPEPT 632
Cdd:PTZ00449   670 KFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLP-PKLPRDEE--FPFEP----IGDPDAE 742
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  633 TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPKEPEPTTRKEPE- 710
Cdd:PTZ00449   743 QPDDIEFFTPPEEERTFFHETPADTPLPDILAEEFKEEDIHAETGEPDEAmKRPDSPSEHEDKPPGDHPSLPKKRHRLDg 822
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  711 ---PTTPKEPEP-TTPKEP--EPTTPKKPEP-TTTSPKTTTLKATTLAPKVTAPAEEIQNKPEETTPASEDSDDSKTTLK 783
Cdd:PTZ00449   823 lalSTTDLESDAgRIAKDAsgKIVKLKRSKSfDDLTTVEEAEEMGAEARKIVVDDDGTEADDEDTHPPEEKHKSEVRRRR 902
                          410       420
                   ....*....|....*....|....*
gi 1907070835  784 PqkptkapkptkkpTKAPKKPTSTK 808
Cdd:PTZ00449   903 P-------------PKKPSKPKKPS 914
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
491-610 1.81e-14

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 71.24  E-value: 1.81e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  491 KEPEPTTPkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTP 570
Cdd:pfam02389    6 KQPCQPPP--QEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSP 83
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1907070835  571 KEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTP 610
Cdd:pfam02389   84 KVPEPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Somatomedin_B pfam01033
Somatomedin B domain;
29-67 1.64e-13

Somatomedin B domain;


Pssm-ID: 426004  Cd Length: 41  Bit Score: 65.46  E-value: 1.64e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 1907070835   29 SCAGRCGEGYSR-DATCNCDYNCQHYMECCPDFKRVCTTE 67
Cdd:pfam01033    2 SCKGRCGEGFDRgRSLCQCDDDCVSYGDCCPDYESLCLGE 41
PRK10263 PRK10263
DNA translocase FtsK; Provisional
478-704 1.72e-13

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 75.51  E-value: 1.72e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  478 EPTTPKEPEPTTPKEP-EPTTPKEPEPTtPKEPEPTTPKEPEPTTPkEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKE 556
Cdd:PRK10263   338 EPVTQTPPVASVDVPPaQPTVAWQPVPG-PQTGEPVIAPAPEGYPQ-QSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQP 415
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  557 PEPTTLKEPEPTTPKEPEPTtlkePEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 636
Cdd:PRK10263   416 AQQPYYAPAPEQPAQQPYYA----PAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVE 491
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907070835  637 PEP----TTPKEPEPTTPKEPEPTTPKEPEPTTP-KKPEPTTPKEPEPTTPKEPEPTTPKEPepttPKEPEPT 704
Cdd:PRK10263   492 PEPvveeTKPARPPLYYFEEVEEKRAREREQLAAwYQPIPEPVKEPEPIKSSLKAPSVAAVP----PVEAAAA 560
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
451-730 3.50e-13

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 74.34  E-value: 3.50e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  451 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEptTPKE-PEPTTPKEPEPTtpKEPEPTT 529
Cdd:PTZ00449   490 KKSKKKLAPIEEEDSDKHDEPPEGPEASGLPPKAPGDKEGEEGEHEDSKESD--EPKEgGKPGETKEGEVG--KKPGPAK 565
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  530 PKEPE--PTTLKEPE-PTTPKEP-EPTTPKEPEpTTLKEPEPTTPKEPE-PTTLKEPEptTPKEPE-PTTTKEPESTTRk 603
Cdd:PTZ00449   566 EHKPSkiPTLSKKPEfPKDPKHPkDPEEPKKPK-RPRSAQRPTRPKSPKlPELLDIPK--SPKRPEsPKSPKRPPPPQR- 641
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  604 epePTTPKEPE-PTTPKEPE-PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPePTT 681
Cdd:PTZ00449   642 ---PSSPERPEgPKIIKSPKpPKSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTP-FTT 717
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  682 PKEPEPTTPKEPEP--TTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTP 730
Cdd:PTZ00449   718 PRPLPPKLPRDEEFpfEPIGDPDAEQPDDIEFFTPPEEERTFFHETPADTP 768
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
411-727 9.74e-13

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 72.90  E-value: 9.74e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  411 KEPEPTTPKEPEPTtPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT--PKEPEPTTPKE---- 484
Cdd:PHA03307    59 AAACDRFEPPTGPP-PGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTppPASPPPSPAPDlsem 137
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  485 --PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTL 562
Cdd:PHA03307   138 lrPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASA 217
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  563 KEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPE----PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 638
Cdd:PHA03307   218 SSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPApitlPTRIWEASGWNGPSSRPGPASSSSSPRERSPS 297
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  639 PTTPKEPEPTTPKEPEPTTPKEPEPTT-PKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEP 717
Cdd:PHA03307   298 PSPSSPGSGPAPSSPRASSSSSSSRESsSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSS 377
                          330
                   ....*....|
gi 1907070835  718 EPTTPKEPEP 727
Cdd:PHA03307   378 PAASAGRPTR 387
PRK10263 PRK10263
DNA translocase FtsK; Provisional
446-680 1.49e-12

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 72.43  E-value: 1.49e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  446 EPTTPKEPEPTTPKEP-EPTTPKEPEPTtPKEPEPTTPKEPEPTTPkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 524
Cdd:PRK10263   338 EPVTQTPPVASVDVPPaQPTVAWQPVPG-PQTGEPVIAPAPEGYPQ-QSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQP 415
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  525 PEPTTPKEPEPTTLKEPEPTtpkePEPTTPKEPEPTTLKEPEPttPKEPEPTTLKEPEPTTPKEPEPTTTKEPEsttrKE 604
Cdd:PRK10263   416 AQQPYYAPAPEQPAQQPYYA----PAPEQPVAGNAWQAEEQQS--TFAPQSTYQTEQTYQQPAAQEPLYQQPQP----VE 485
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070835  605 PEPTTPKEP--EPTTPKEPEPTTPKEPEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPKEPEPTTPKKPepttPKEPEPT 680
Cdd:PRK10263   486 QQPVVEPEPvvEETKPARPPLYYFEEVEEKRAREREQLAAwYQPIPEPVKEPEPIKSSLKAPSVAAVP----PVEAAAA 560
PRK10263 PRK10263
DNA translocase FtsK; Provisional
462-688 2.42e-12

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 71.65  E-value: 2.42e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  462 EPTTPKEPEPTTPKEP-EPTTPKEPEPTtPKEPEPTTPKEPEPTTPkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKE 540
Cdd:PRK10263   338 EPVTQTPPVASVDVPPaQPTVAWQPVPG-PQTGEPVIAPAPEGYPQ-QSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQP 415
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  541 PEPTTPKEPEPTTPKEPEPTtlkePEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKE 620
Cdd:PRK10263   416 AQQPYYAPAPEQPAQQPYYA----PAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVE 491
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907070835  621 PEP----TTPKEPEPTTPKEPEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPKKPEPTTPKEPepttPKEPEPT 688
Cdd:PRK10263   492 PEPvveeTKPARPPLYYFEEVEEKRAREREQLAAwYQPIPEPVKEPEPIKSSLKAPSVAAVP----PVEAAAA 560
HX smart00120
Hemopexin-like repeats; Hemopexin is a heme-binding protein that transports heme to the liver. ...
964-1008 3.29e-12

Hemopexin-like repeats; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs).


Pssm-ID: 214524 [Multi-domain]  Cd Length: 45  Bit Score: 61.87  E-value: 3.29e-12
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*
gi 1907070835   964 IDTVFTRCNceGKTFFFKDSQYWRFTNDVVDPGYPKQIVKGFGGL 1008
Cdd:smart00120    1 IDAAFELRD--GKTYFFKGDKYWRFDPKRVDPGYPKLISSFFPGL 43
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
404-727 1.25e-11

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 69.24  E-value: 1.25e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  404 EPEPT-TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTlkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPkePEPTTP 482
Cdd:PRK07764   405 APAAApAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPS---PAGNAPAGGAPSPPPAAAPSAQPAPAPAAA--PEPTAA 479
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  483 KEPEPTTPKEPEPTTPKEPEPTTP------------------------------KEPEPT-------------------- 512
Cdd:PRK07764   480 PAPAPPAAPAPAAAPAAPAAPAAPagaddaatlrerwpeilaavpkrsrktwaiLLPEATvlgvrgdtlvlgfstgglar 559
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  513 ---TPKEPE--------------------PTTPKEPEPTTPKEPEPttlKEPEPTTPKEPEPTTPKEPEPTtlkePEPTT 569
Cdd:PRK07764   560 rfaSPGNAEvlvtalaeelggdwqveavvGPAPGAAGGEGPPAPAS---SGPPEEAARPAAPAAPAAPAAP----APAGA 632
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  570 PKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKE---PEPTTPKEPEPTTPKEPEPTTPKEPE 646
Cdd:PRK07764   633 AAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPapaPAAPAAPAGAAPAQPAPAPAATPPAG 712
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  647 PTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPE 726
Cdd:PRK07764   713 QADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPS 792

                   .
gi 1907070835  727 P 727
Cdd:PRK07764   793 M 793
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
405-718 1.51e-11

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 68.86  E-value: 1.51e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  405 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPttlKEPEPTTPKEPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKE 484
Cdd:PRK07764   415 AAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAP---AGGAPSPPPAAAPSAQPAPAPAAA--PEPTAAPAPAPPAAPA 489
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  485 PEPTTPKEPEPTTP------------------------------KEPEPT-----------------------TPKEPE- 510
Cdd:PRK07764   490 PAAAPAAPAAPAAPagaddaatlrerwpeilaavpkrsrktwaiLLPEATvlgvrgdtlvlgfstgglarrfaSPGNAEv 569
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  511 -------------------PTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEP-TTPKEPEPTTLKEPEPTTP 570
Cdd:PRK07764   570 lvtalaeelggdwqveavvGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPaGAAAAPAEASAAPAPGVAA 649
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  571 KEPEPTTLKEPEPTTPKEPEPTTTKEP---ESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 647
Cdd:PRK07764   650 PEHHPKHVAVPDASDGGDGWPAKAGGAapaAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGAS 729
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907070835  648 TTPKEPEPTTPKEPEPTTPKKPEPTtPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTR---KEPEPTTPKEPE 718
Cdd:PRK07764   730 APSPAADDPVPLPPEPDDPPDPAGA-PAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEddaPSMDDEDRRDAE 802
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
450-691 3.55e-11

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 67.26  E-value: 3.55e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  450 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEptTPKEPEPTTPKEPEPTTPKEP-EPTTPKEPEPTTPKEPEPT----TPKE 524
Cdd:PLN03209   330 PKESDAADGPKPVPTKPVTPEAPSPPIEE--EPPQPKAVVPRPLSPYTAYEDlKPPTSPIPTPPSSSPASSKsvdaVAKP 407
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  525 PEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKE 604
Cdd:PLN03209   408 AEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAA 487
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  605 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTP--KEPEPTTP 682
Cdd:PLN03209   488 APPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKPRPLSPytMYEDLKPP 567

                   ....*....
gi 1907070835  683 KEPEPTTPK 691
Cdd:PLN03209   568 TSPTPSPVL 576
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
468-841 3.78e-11

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 411408 [Multi-domain]  Cd Length: 557  Bit Score: 67.10  E-value: 3.78e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  468 EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP--KEPEPTTPKEPEPTTPKEPEPTTLKEPEPTT 545
Cdd:NF033839   158 KPETPQPENPEHQKPTTPAPDTKPSPQPEGKKPSVPDINQEKEKAKLavATYMSKILDDIQKHHLQKEKHRQIVALIKEL 237
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  546 PKEPEPTTPKEPEPTTLKEPEPTTPK---EPEPTTLKEPEPTTPKEPEPTTTKEPES-TTRKEPEPTTPKEPEPTTPKEP 621
Cdd:NF033839   238 DELKKQALSEIDNVNTKVEIENTVHKifaDMDAVVTKFKKGLTQDTPKEPGNKKPSApKPGMQPSPQPEKKEVKPEPETP 317
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  622 EPTTPKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK-KPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 699
Cdd:NF033839   318 KPEVKPQLEKPKPEvKPQPEKPKPEVKPQLETPKPEVKPQPEKPKPEvKPQPEKPKPEVKPQPETPKPEVKPQPEKPKPE 397
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  700 -EPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTaPAEEIQNKPEETTPASEDSDDS 778
Cdd:NF033839   398 vKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVK-PQPETPKPEVKPQPEKPKPEVK 476
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907070835  779 KTTLKPQKPTKAPKPTKKPTKAPKKPTSTKKPKTPKTRKPKTTPSPLKTTSATPELNTTPLEV 841
Cdd:NF033839   477 PQPEKPKPDNSKPQADDKKPSTPNNLSKDKQPSNQASTNEKATNKPKKSLPSTGSISNLALEI 539
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
399-710 1.12e-10

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 66.16  E-value: 1.12e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  399 STTRKEPEPTTPKEPEPTtPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP- 477
Cdd:PRK07764   419 AAAAPAPAAAPQPAPAPA-PAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAp 497
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  478 -EPTTP------------------------------KEPEPT-----------------------TPKEPE--------- 494
Cdd:PRK07764   498 aAPAAPagaddaatlrerwpeilaavpkrsrktwaiLLPEATvlgvrgdtlvlgfstgglarrfaSPGNAEvlvtalaee 577
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  495 -----------PTTPKEPEPTTPKEPEPTTPKE--PEPTTPKEPEPTTPKEPEPTTlKEPEPTTPKEPEPTTPKEPEPTT 561
Cdd:PRK07764   578 lggdwqveavvGPAPGAAGGEGPPAPASSGPPEeaARPAAPAAPAAPAAPAPAGAA-AAPAEASAAPAPGVAAPEHHPKH 656
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  562 LKEPEPTTPKEPEPTTLKEPEPTTPKEPEPtttkePESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 641
Cdd:PRK07764   657 VAVPDASDGGDGWPAKAGGAAPAAPPPAPA-----PAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAP 731
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907070835  642 PKEPEPTTPKEPEPTTPKEPEPtTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP---KEPEPTTRKEPE 710
Cdd:PRK07764   732 SPAADDPVPLPPEPDDPPDPAG-APAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEddaPSMDDEDRRDAE 802
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
407-730 1.21e-10

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 65.78  E-value: 1.21e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  407 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 486
Cdd:PRK07764   386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQ 465
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  487 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPePTTPKEPEPTTP-------------------------KEPEPT----- 536
Cdd:PRK07764   466 PAPAPAAAPEPTAAPAPAPPAAPAPAAAPAA-PAAPAAPAGADDaatlrerwpeilaavpkrsrktwaiLLPEATvlgvr 544
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  537 ----TLKEPEP----------------------------------TTPKEPEPTTPKEPE----PTTLKEPEPTTPKEPE 574
Cdd:PRK07764   545 gdtlVLGFSTGglarrfaspgnaevlvtalaeelggdwqveavvgPAPGAAGGEGPPAPAssgpPEEAARPAAPAAPAAP 624
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  575 PTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 654
Cdd:PRK07764   625 AAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPA 704
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  655 PTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEP-------TTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEP 727
Cdd:PRK07764   705 PAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPddppdpaGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEE 784

                   ...
gi 1907070835  728 TTP 730
Cdd:PRK07764   785 MAE 787
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
507-731 1.48e-10

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 65.48  E-value: 1.48e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  507 KEPEPTTPKEPEPTTPKEPEPttPKEPEPTTLKepePTTPKEPEPTTP-KEPEPTTLKEPEPTTPKE-PEPTTLKEPEPT 584
Cdd:PTZ00449   490 KKSKKKLAPIEEEDSDKHDEP--PEGPEASGLP---PKAPGDKEGEEGeHEDSKESDEPKEGGKPGEtKEGEVGKKPGPA 564
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  585 TPKEPE--PTTTKEPESttrkepePTTPKEP-EPTTPKEPE-PTTPKEP-EPTTPKEPE----PTTPKEPE-PTTPKEPE 654
Cdd:PTZ00449   565 KEHKPSkiPTLSKKPEF-------PKDPKHPkDPEEPKKPKrPRSAQRPtRPKSPKLPElldiPKSPKRPEsPKSPKRPP 637
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  655 PTTpkepEPTTPKKPE-PTTPKEPEPttPKEPEP-----------------------------------TTPKEPEPTTP 698
Cdd:PTZ00449   638 PPQ----RPSSPERPEgPKIIKSPKP--PKSPKPpfdpkfkekfyddyldaaaksketkttvvldesfeSILKETLPETP 711
                          250       260       270
                   ....*....|....*....|....*....|...
gi 1907070835  699 KEPEPTTRKEPePTTPKEPEPTTPKEPEPTTPK 731
Cdd:PTZ00449   712 GTPFTTPRPLP-PKLPRDEEFPFEPIGDPDAEQ 743
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
415-780 1.91e-10

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 65.39  E-value: 1.91e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  415 PTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 494
Cdd:PRK07764   386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQ 465
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  495 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTP----------------KEPEPtTPKEPE 558
Cdd:PRK07764   466 PAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRERWPeilaavpkrsrktwaiLLPEA-TVLGVR 544
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  559 PTTL----------------KEPE--------------------PTTPKEPEPTTLKEPEPTTPKE--PEPTTTKEPEST 600
Cdd:PRK07764   545 GDTLvlgfstgglarrfaspGNAEvlvtalaeelggdwqveavvGPAPGAAGGEGPPAPASSGPPEeaARPAAPAAPAAP 624
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  601 TRKEPePTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE-PEPTTPKKPEPTTPKEPEP 679
Cdd:PRK07764   625 AAPAP-AGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPaPAPAAPAAPAGAAPAQPAP 703
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  680 TTPKEPEPTTPKEPEPTTPKEPEPTTRKePEPTTPKEPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAE 759
Cdd:PRK07764   704 APAATPPAGQADDPAAQPPQAAQGASAP-SPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEE 782
                          410       420
                   ....*....|....*....|.
gi 1907070835  760 EIQNKPEETTPASEDSDDSKT 780
Cdd:PRK07764   783 EEMAEDDAPSMDDEDRRDAEE 803
PRK10263 PRK10263
DNA translocase FtsK; Provisional
542-730 1.94e-10

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 65.49  E-value: 1.94e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  542 EPTTPKEPEPTTPKEP-EPTTLKEPEPTtPKEPEPTTLKEPEPTTPkEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKE 620
Cdd:PRK10263   338 EPVTQTPPVASVDVPPaQPTVAWQPVPG-PQTGEPVIAPAPEGYPQ-QSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQP 415
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  621 PE----PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPttPKEPEPT---TPKKPEPTTPKEPE-PTTPKEPEPTTPKE 692
Cdd:PRK10263   416 AQqpyyAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQS--TFAPQSTyqtEQTYQQPAAQEPLYqQPQPVEQQPVVEPE 493
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*....
gi 1907070835  693 P--EPTTPKEP---------EPTTRKEPEPTTPKEPEPTTPKEPEPTTP 730
Cdd:PRK10263   494 PvvEETKPARPplyyfeeveEKRAREREQLAAWYQPIPEPVKEPEPIKS 542
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
482-663 2.57e-10

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 64.60  E-value: 2.57e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  482 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPkePEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTT 561
Cdd:PRK14948   363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATT--PSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLN 440
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  562 LKE---------PEPTT-------------------------------PKEPEPTT---------------LKEPEPTTP 586
Cdd:PRK14948   441 LEElwqqilaklELPSTrmllsqqaelvsldsnraviavspnwlgmvqSRKPLLEQafakvlgrsiklnleSQSGSASNT 520
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070835  587 KEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKePEPTTPKEPEP 663
Cdd:PRK14948   521 AKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPT-PSPTKDSSPEE 596
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
498-730 2.63e-10

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 64.56  E-value: 2.63e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  498 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEptTPKEPEPTTLKEPEPTTPKEP-EPTTPKEPEPTTLKEPEPTtpkePEPT 576
Cdd:PLN03209   330 PKESDAADGPKPVPTKPVTPEAPSPPIEE--EPPQPKAVVPRPLSPYTAYEDlKPPTSPIPTPPSSSPASSK----SVDA 403
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  577 TLKEPEPTTPKEPEPTTT---KEPESTTRKEPEPTTP--KEPEPTTPKEPEPTTPKEPEPTTPKepEPTTPKEPEPTTPK 651
Cdd:PLN03209   404 VAKPAEPDVVPSPGSASNvpeVEPAQVEAKKTRPLSPyaRYEDLKPPTSPSPTAPTGVSPSVSS--TSSVPAVPDTAPAT 481
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070835  652 EPEPTTPKEPEPTTPKKPEPTTPKEPEPTTpkePEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTP 730
Cdd:PLN03209   482 AATDAAAPPPANMRPLSPYAVYDDLKPPTS---PSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKPRPLSP 557
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
498-687 2.66e-10

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 64.60  E-value: 2.66e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  498 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTlkEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTT 577
Cdd:PRK14948   363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAAT--TPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLN 440
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  578 LKEPEPTTPKEPEPTTTK------------EPESTT-----------------------------------RKEPEPTTP 610
Cdd:PRK14948   441 LEELWQQILAKLELPSTRmllsqqaelvslDSNRAViavspnwlgmvqsrkplleqafakvlgrsiklnleSQSGSASNT 520
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070835  611 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKePEPTTPKEPEP 687
Cdd:PRK14948   521 AKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPT-PSPTKDSSPEE 596
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
458-647 3.56e-10

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 64.21  E-value: 3.56e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  458 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 537
Cdd:PRK14948   363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATT--PSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLN 440
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  538 LKE---------PEPTT-------------------------------PKEPEPTTPKEP---EPTTL----KEPEPTTP 570
Cdd:PRK14948   441 LEElwqqilaklELPSTrmllsqqaelvsldsnraviavspnwlgmvqSRKPLLEQAFAKvlgRSIKLnlesQSGSASNT 520
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070835  571 KEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKePEPTTPKEPEP 647
Cdd:PRK14948   521 AKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPT-PSPTKDSSPEE 596
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
426-604 5.07e-10

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 63.73  E-value: 5.07e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  426 PKEPEPTTPKEPEPTTlkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 505
Cdd:PRK07994   361 PAAPLPEPEVPPQSAA---PAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATK 437
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  506 PKEPEPTTPKEPEPTtPKEPEPTTPKEPEPTTLkePEPTTPKEPEPTTPKEPEPTtlKEPEPTTPKEPEPTTLKEpeptt 585
Cdd:PRK07994   438 AKKSEPAAASRARPV-NSALERLASVRPAPSAL--EKAPAKKEAYRWKATNPVEV--KKEPVATPKALKKALEHE----- 507
                          170
                   ....*....|....*....
gi 1907070835  586 pKEPEPTTTKEPESTTRKE 604
Cdd:PRK07994   508 -KTPELAAKLAAEAIERDP 525
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
538-785 6.79e-10

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 63.56  E-value: 6.79e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  538 LKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEP-EPTTTKEPESTtrKEPEPTtpKEPEPT 616
Cdd:PTZ00449   489 IKKSKKKLAPIEEEDSDKHDEPPEGPEASGLPPKAPGDKEGEEGEHEDSKESdEPKEGGKPGET--KEGEVG--KKPGPA 564
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  617 TPKEPE--PTTPKEPE-PTTPKEP-EPTTPKEPE-PTTPKEP-EPTTPKEPE----PTTPKKPE-PTTPKEP----EPTT 681
Cdd:PTZ00449   565 KEHKPSkiPTLSKKPEfPKDPKHPkDPEEPKKPKrPRSAQRPtRPKSPKLPElldiPKSPKRPEsPKSPKRPpppqRPSS 644
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  682 PKEPE-PTTPKEPE-PTTPKEPEPTTRKEP-----EPTTPKEPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKV 754
Cdd:PTZ00449   645 PERPEgPKIIKSPKpPKSPKPPFDPKFKEKfyddyLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPK 724
                          250       260       270
                   ....*....|....*....|....*....|.
gi 1907070835  755 TAPAEEIQNKPEEtTPASEDSDDSKTTLKPQ 785
Cdd:PTZ00449   725 LPRDEEFPFEPIG-DPDAEQPDDIEFFTPPE 754
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
418-567 8.33e-10

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 62.96  E-value: 8.33e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  418 PKEPEPTTPKEPEPTTPKEPEPTTlkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 497
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQAT---AAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATK 437
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907070835  498 PKEPEPTTPKEPEPTtPKEPEPTTPKEPEPTT----PKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEP 567
Cdd:PRK07994   438 AKKSEPAAASRARPV-NSALERLASVRPAPSAlekaPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTP 510
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
405-730 1.08e-09

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 62.70  E-value: 1.08e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  405 PEPTTPKEPEPTtPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPKEPEPTTPk 483
Cdd:PRK07764   396 AAAPSAAAAAPA-AAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNApAGGAPSPPPAAAPSAQPAPAPAAA- 473
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  484 ePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP-------------TTPKEPEPTTP-KEPEPT---------TLKE 540
Cdd:PRK07764   474 -PEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDaatlrerwpeilaAVPKRSRKTWAiLLPEATvlgvrgdtlVLGF 552
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  541 PEP----------------------------------TTPKEPEPTTPKEPEPTTLKE--PEPTTPKEPEPTtlkePEPT 584
Cdd:PRK07764   553 STGglarrfaspgnaevlvtalaeelggdwqveavvgPAPGAAGGEGPPAPASSGPPEeaARPAAPAAPAAP----AAPA 628
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  585 TPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKEPEPT 664
Cdd:PRK07764   629 PAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPA--PAAPAAPAGAAPAQPAPAPA 706
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907070835  665 TPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP-------TTRKEPEPTTPKEPEPTTPKEPEPTTP 730
Cdd:PRK07764   707 ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPddppdpaGAPAQPPPPPAPAPAAAPAAAPPPSPP 779
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
404-730 1.23e-09

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 62.88  E-value: 1.23e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  404 EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPttlkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 483
Cdd:PHA03307   112 SSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPP-----PAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAP 186
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  484 EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLK 563
Cdd:PHA03307   187 SSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLP 266
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  564 EP--EPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTpkepePTT 641
Cdd:PHA03307   267 TRiwEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRG-----AAV 341
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  642 PKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEP--TTPKEPEPTTPKE-PEPTTRKEPEPTTPKEPE 718
Cdd:PHA03307   342 SPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRrrARAAVAGRARRRDaTGRFPAGRPRPSPLDAGA 421
                          330
                   ....*....|..
gi 1907070835  719 ptTPKEPEPTTP 730
Cdd:PHA03307   422 --ASGAFYARYP 431
Hemopexin pfam00045
Hemopexin; Hemopexin is a heme-binding protein that transports heme to the liver. ...
964-1001 1.56e-09

Hemopexin; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metallopeptidases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metallopeptidases (TIMPs).


Pssm-ID: 395000 [Multi-domain]  Cd Length: 44  Bit Score: 54.49  E-value: 1.56e-09
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 1907070835  964 IDTVFTRCNceGKTFFFKDSQYWRFTNDVVDPGYPKQI 1001
Cdd:pfam00045    1 IDAAFEDRD--GKTYFFKGRKYWRFDPQRVEPGYPKLI 36
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
453-620 2.12e-09

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 61.81  E-value: 2.12e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  453 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP-KEPEPTTPKEPEPTTP--KEPEPTTPKEPEPTT 529
Cdd:PRK07994   366 PEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPaVPLPETTSQLLAARQQlqRAQGATKAKKSEPAA 445
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  530 PKEPEPTTlKEPEPTTPKEPEPTTPkePEPTTLKEPEPTTPKEPEPTtlKEPEPTTPKEPEPTTTKEpesttrKEPEPTT 609
Cdd:PRK07994   446 ASRARPVN-SALERLASVRPAPSAL--EKAPAKKEAYRWKATNPVEV--KKEPVATPKALKKALEHE------KTPELAA 514
                          170
                   ....*....|.
gi 1907070835  610 PKEPEPTTPKE 620
Cdd:PRK07994   515 KLAAEAIERDP 525
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
535-730 2.24e-09

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 61.82  E-value: 2.24e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  535 PTTLKEPEPTTPKEPEPTTPKEPEPTTlkePEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPE 614
Cdd:PRK12323   375 ATAAAAPVAQPAPAAAAPAAAAPAPAA---PPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  615 PTTPKEPEPTTP---KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEP--TTPKEPEPTTPKEPEPTT 689
Cdd:PRK12323   452 PAPAAAPAAAARpaaAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPaqPDAAPAGWVAESIPDPAT 531
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|...
gi 1907070835  690 PKEPEPTTPKEPEPTTRKEPEPTTPKEPE--PTTPKEPEPTTP 730
Cdd:PRK12323   532 ADPDDAFETLAPAPAAAPAPRAAAATEPVvaPRPPRASASGLP 574
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
522-703 2.36e-09

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 61.52  E-value: 2.36e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  522 PKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTlkEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTT 601
Cdd:PRK14948   363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAAT--TPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLN 440
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  602 RKE---------PEPTT-------------------------------PKEPEPTTP---------------KEPEPTTP 626
Cdd:PRK14948   441 LEElwqqilaklELPSTrmllsqqaelvsldsnraviavspnwlgmvqSRKPLLEQAfakvlgrsiklnlesQSGSASNT 520
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070835  627 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKePEPTTPKEPEP 703
Cdd:PRK14948   521 AKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPT-PSPTKDSSPEE 596
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
622-708 2.38e-09

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 61.74  E-value: 2.38e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  622 EPTTPKEPEPTTPKEPEPTTPKepepttPKEPEPTTPKEPEPTTPKKPEPTtPKEPEPTTPKEPEPTTPKEPEPTTPKEP 701
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVIPD------PVDPDPVDPVIPDPVIPDPVDPD-PVDPEPVDPVIPDPTIPDIGQSDTPPIT 631

                   ....*..
gi 1907070835  702 EPTTRKE 708
Cdd:PRK15313   632 EHQFRPE 638
PHA03247 PHA03247
large tegument protein UL36; Provisional
426-713 3.32e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 61.49  E-value: 3.32e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  426 PKEPEPTTPKEPEPTTLK---------EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPttpkePEPTTPKEPEPT 496
Cdd:PHA03247   206 PSGPGPAAPADLTAAALHlygasetylQDEPFVERRVVISHPLRGDIAAPAPPPVVGEGADRA-----PETARGATGPPP 280
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  497 TPKEPEPTTPKEPEP---------TTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKePEPTTPKEPEPTTLKEPEP 567
Cdd:PHA03247   281 PPEAAAPNGAAAPPDgvwgaalagAPLALPAPPDPPPPAPAGDAEEEDDEDGAMEVVSPL-PRPRQHYPLGFPKRRRPTW 359
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  568 TTPKEPEPTTLKEPEPttPKEPEPTTTKEpesTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPepttpkEPEP 647
Cdd:PHA03247   360 TPPSSLEDLSAGRHHP--KRASLPTRKRR---SARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVP------ASAP 428
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070835  648 TTPKEPEPTtpkePEPTTPKKPEPTtpkePEPTTPKEPEPTTPKEPEPTTPKEPEP-TTRKEPEPTT 713
Cdd:PHA03247   429 PPPATPLPS----AEPGSDDGPAPP----PERQPPAPATEPAPDDPDDATRKALDAlRERRPPEPPG 487
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
606-695 5.33e-09

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 60.58  E-value: 5.33e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  606 EPTTPKEPEPTTPKEPEPTTPKepepttPKEPEPTTPKEPEPTTPKEPEPtTPKEPEPTTPKKPEPTTPKEPEPTTPkep 685
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVIPD------PVDPDPVDPVIPDPVIPDPVDP-DPVDPEPVDPVIPDPTIPDIGQSDTP--- 628
                           90
                   ....*....|
gi 1907070835  686 ePTTPKEPEP 695
Cdd:PRK15313   629 -PITEHQFRP 637
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
446-535 6.21e-09

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 60.20  E-value: 6.21e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  446 EPTTPKEPEPTTPKEPEPTTPKepepttPKEPEPTTPKEPEPTTPKEPEPTtPKEPEPTTPKEPEPTTPKEPEPTTPkep 525
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVIPD------PVDPDPVDPVIPDPVIPDPVDPD-PVDPEPVDPVIPDPTIPDIGQSDTP--- 628
                           90
                   ....*....|
gi 1907070835  526 ePTTPKEPEP 535
Cdd:PRK15313   629 -PITEHQFRP 637
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
487-690 7.58e-09

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 59.89  E-value: 7.58e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  487 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTtlkEPEPTTPKEPEPTTPKEPEPTTLKEPE 566
Cdd:PRK12323   375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA---RRSPAPEALAAARQASARGPGGAPAPA 451
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  567 PTTPKEPEPTTlkepePTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEP--TTPKEPEPTTPKE 644
Cdd:PRK12323   452 PAPAAAPAAAA-----RPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPaqPDAAPAGWVAESI 526
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*...
gi 1907070835  645 PEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPE--PTTPKEPEPTTP 690
Cdd:PRK12323   527 PDPATADPDDAFETLAPAPAAAPAPRAAAATEPVvaPRPPRASASGLP 574
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
407-605 9.79e-09

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 59.50  E-value: 9.79e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  407 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTlkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 486
Cdd:PRK12323   375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAA---PAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  487 PTTPKEPEPTTP---KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEP--TTPKEPEPTTPKEPEPTT 561
Cdd:PRK12323   452 PAPAAAPAAAARpaaAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPaqPDAAPAGWVAESIPDPAT 531
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....
gi 1907070835  562 LKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEP 605
Cdd:PRK12323   532 ADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPD 575
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
614-703 1.18e-08

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 59.43  E-value: 1.18e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  614 EPTTPKEPEPTTPKEPEPTTPKepepttPKEPEPTTPKEPEPTTPKEPEPtTPKKPEPTTPKEPEPTTPKEPEPTTPkep 693
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVIPD------PVDPDPVDPVIPDPVIPDPVDP-DPVDPEPVDPVIPDPTIPDIGQSDTP--- 628
                           90
                   ....*....|
gi 1907070835  694 ePTTPKEPEP 703
Cdd:PRK15313   629 -PITEHQFRP 637
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
466-636 1.28e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 59.11  E-value: 1.28e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  466 PKEPEPTTPKEPEPTTPKEPEPTTPkepEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTT 545
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATA---APTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATK 437
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  546 PKEPEPTTPKEPEPTTlKEPEPTTPKEPEPTTLkePEPTTPKEPEPTTTKEPESTtrKEPEPTTPKEPEP--TTPKEPEP 623
Cdd:PRK07994   438 AKKSEPAAASRARPVN-SALERLASVRPAPSAL--EKAPAKKEAYRWKATNPVEV--KKEPVATPKALKKalEHEKTPEL 512
                          170
                   ....*....|...
gi 1907070835  624 TTPKEPEPTTPKE 636
Cdd:PRK07994   513 AAKLAAEAIERDP 525
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
503-698 1.31e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 59.12  E-value: 1.31e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  503 PTTPKEPEPTTPKEPEPTTPKEPEPTTPkEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTtlKEPE 582
Cdd:PRK12323   375 ATAAAAPVAQPAPAAAAPAAAAPAPAAP-PAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGA--PAPA 451
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  583 PTTPKEPEPTT---TKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP--TTPKEPEPTTPKEPEPTT 657
Cdd:PRK12323   452 PAPAAAPAAAArpaAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPaqPDAAPAGWVAESIPDPAT 531
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|...
gi 1907070835  658 PKEPEPTTPKKPEPTTPKEPEPTTPKEPE--PTTPKEPEPTTP 698
Cdd:PRK12323   532 ADPDDAFETLAPAPAAAPAPRAAAATEPVvaPRPPRASASGLP 574
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
439-650 1.32e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 59.12  E-value: 1.32e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  439 PTTLKEPEPTTPKEPEPTTPKEPEPTTPkepEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 518
Cdd:PRK12323   375 ATAAAAPVAQPAPAAAAPAAAAPAPAAP---PAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  519 PTTPKEPEPTTPKEPEPttlkePEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEP--TTPKEPEPTTTKE 596
Cdd:PRK12323   452 PAPAAAPAAAARPAAAG-----PRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPaqPDAAPAGWVAESI 526
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1907070835  597 PESTTRKEPEPTTPKEPEPTTPkePEPTTPKEPEPTTPkepePTTPKEPEPTTP 650
Cdd:PRK12323   527 PDPATADPDDAFETLAPAPAAA--PAPRAAAATEPVVA----PRPPRASASGLP 574
rne PRK10811
ribonuclease E; Reviewed
455-626 1.37e-08

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 59.28  E-value: 1.37e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  455 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTpkEPEPTTPKEPEPTTpkEPEPTTPKEPEPTTPkEPE 534
Cdd:PRK10811   846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVA--EPQPEEVVVVETTHP-EVI 920
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  535 PTTLKEPEPTTPKEPEPTTPKEPEpttlkEPEPTTPKEPEPTTLKEPEPTTPKEP-EPTTTKEPESTTRKEPEPTTPKEP 613
Cdd:PRK10811   921 AAPVTEQPQVITESDVAVAQEVAE-----HAEPVVEPQDETADIEEAAETAEVVVaEPEVVAQPAAPVVAEVAAEVETVT 995
                          170
                   ....*....|...
gi 1907070835  614 EPTTPKEPEPTTP 626
Cdd:PRK10811   996 AVEPEVAPAQVPE 1008
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
405-580 1.50e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 58.82  E-value: 1.50e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  405 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTlkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 484
Cdd:PRK14948   366 SEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAAT--TPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLNLEE 443
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  485 ---------PEPTT------------------------------------------------------PKEPEPTTPKEP 501
Cdd:PRK14948   444 lwqqilaklELPSTrmllsqqaelvsldsnraviavspnwlgmvqsrkplleqafakvlgrsiklnleSQSGSASNTAKT 523
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070835  502 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTlkePEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKE 580
Cdd:PRK14948   524 PPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTA---TQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSSPEEIDK 599
Aim21 pfam11489
Altered inheritance of mitochondria protein 21; This is a family of proteins conserved in ...
418-699 1.53e-08

Altered inheritance of mitochondria protein 21; This is a family of proteins conserved in yeasts. Saccharomyces cerevisiae Aim21 may be involved in mitochondrial migration along actin filament. It may also interact with ribosomes.


Pssm-ID: 371558 [Multi-domain]  Cd Length: 677  Bit Score: 58.83  E-value: 1.53e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  418 PKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTpKEPEPTTPKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPT 496
Cdd:pfam11489  288 PSSPAPQSSSASPSGESGEEERDWYEEPILAS-DEVAKEPAGEEPAVSPSFEREEIVKyEVKSRTESVPESREESKIASI 366
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  497 TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLkEPEPTTPKEPEPT 576
Cdd:pfam11489  367 HGSVPSLARHTPLEDVEEYEPLFPEDDSEGAVKKPTEESSRFKRPELNHRFPSEDVWEDSPSSLQL-TATVSTPSNPPPR 445
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  577 TLKEPEPTTPKEPEPTTTKePESTTRKEPEPTTPKEPEPTTPKEP-------------EPTTPKEPEPTTPKEPEpttpK 643
Cdd:pfam11489  446 AFETPEQETSSSSSEPSLD-DQSELKSEDVKERPEVKAQRFPSRDvwedapesqelvtTVETPDEVKSTSPGVPT----K 520
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070835  644 EPEPTTPKEPEPTTPKEPE--PTTPKKPEPTTPKEPE-PTTPKEPEPTTPKEPEPTTPK 699
Cdd:pfam11489  521 PAIPARPKSGKPTSPTEKRkpPPVPKKPKPQIPARPAkAQPQQAGEEFKPKPRVPARPG 579
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
546-716 1.58e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 58.72  E-value: 1.58e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  546 PKEPEPTTPKEPEPTTlkepePTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTP--KEPEP 623
Cdd:PRK07994   361 PAAPLPEPEVPPQSAA-----PAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQlqRAQGA 435
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  624 TTPKEPEPTTPKEPEPTtPKEPEPTTPKEPEPTTPKEPepttPKKPEPTTPKEPEPTTPKEPEPTTPKEPEP--TTPKEP 701
Cdd:PRK07994   436 TKAKKSEPAAASRARPV-NSALERLASVRPAPSALEKA----PAKKEAYRWKATNPVEVKKEPVATPKALKKalEHEKTP 510
                          170
                   ....*....|....*
gi 1907070835  702 EPTTRKEPEPTTPKE 716
Cdd:PRK07994   511 ELAAKLAAEAIERDP 525
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
530-708 1.89e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 58.72  E-value: 1.89e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  530 PKEPEPTTlkePEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTT 609
Cdd:PRK07994   361 PAAPLPEP---EVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATK 437
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  610 PKEPEPTTPKEPEPtTPKEPEPTTPKEPEPTTPKEPepttPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEpeptt 689
Cdd:PRK07994   438 AKKSEPAAASRARP-VNSALERLASVRPAPSALEKA----PAKKEAYRWKATNPVEVKKEPVATPKALKKALEHE----- 507
                          170
                   ....*....|....*....
gi 1907070835  690 pKEPEPTTPKEPEPTTRKE 708
Cdd:PRK07994   508 -KTPELAAKLAAEAIERDP 525
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
410-683 2.03e-08

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 58.80  E-value: 2.03e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  410 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTtlKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 489
Cdd:NF033845   543 PKDPTPGPPVDPEPSPEPEPEPTPDPEPSPD--PDPEPSPDPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDSDS 620
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  490 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTT 569
Cdd:NF033845   621 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 700
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  570 PKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 649
Cdd:NF033845   701 SSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 780
                          250       260       270
                   ....*....|....*....|....*....|....
gi 1907070835  650 PKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPK 683
Cdd:NF033845   781 DSDSDSDSDSDSDSDSDSRVTPPNNEQKAPSNPK 814
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
514-692 2.24e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 58.34  E-value: 2.24e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  514 PKEPEPTTPKEPEPTTPKEPEPTTlkePEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTT 593
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQAT---AAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATK 437
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  594 TKEPESTTRKEPEPtTPKEPEPTTPKEPEPTTPKEPepttPKEPEPTTPKEPEPTTPKEPEPTTPKEPepttpkKPEPTT 673
Cdd:PRK07994   438 AKKSEPAAASRARP-VNSALERLASVRPAPSALEKA----PAKKEAYRWKATNPVEVKKEPVATPKAL------KKALEH 506
                          170
                   ....*....|....*....
gi 1907070835  674 PKEPEPTTPKEPEPTTPKE 692
Cdd:PRK07994   507 EKTPELAAKLAAEAIERDP 525
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
482-652 2.30e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 58.34  E-value: 2.30e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  482 PKEPEPTTPKEPEPTTPKEPEPTTPkEPEPTTPKEPEPTTPKEPEPTTPKEPEPttlkEPEPTTPKEPEPTTP--KEPEP 559
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATA-APTAAVAPPQAPAVPPPPASAPQQAPAV----PLPETTSQLLAARQQlqRAQGA 435
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  560 TTLKEPEPTTPKEPEPTTlKEPEPTTPKEPEPTTTkePESTTRKEPEPTTPKEPEPTtpKEPEPTTPKEPEP--TTPKEP 637
Cdd:PRK07994   436 TKAKKSEPAAASRARPVN-SALERLASVRPAPSAL--EKAPAKKEAYRWKATNPVEV--KKEPVATPKALKKalEHEKTP 510
                          170
                   ....*....|....*
gi 1907070835  638 EPTTPKEPEPTTPKE 652
Cdd:PRK07994   511 ELAAKLAAEAIERDP 525
rne PRK10811
ribonuclease E; Reviewed
401-597 2.64e-08

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 58.51  E-value: 2.64e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  401 TRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTlkEPEPTTPKEPEPTTpkEPEPTTPKEPEPTTPKEPEPT 480
Cdd:PRK10811   848 VRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVA--EPQPEEVVVVETTHPEVIAAP 923
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  481 TPKEPEPTTpkepEPTTPKEPEptTPKEPEPTTPKEPEPTTPKEPEPTTPKEP-EPTTLKEPEPTTPKEPEPTTPKEPep 559
Cdd:PRK10811   924 VTEQPQVIT----ESDVAVAQE--VAEHAEPVVEPQDETADIEEAAETAEVVVaEPEVVAQPAAPVVAEVAAEVETVT-- 995
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|
gi 1907070835  560 ttlKEPEPTTPKEPEPTTLKEPEPTTP--KEPEPTTTKEP 597
Cdd:PRK10811   996 ---AVEPEVAPAQVPEATVEHNHATAPmtRAPAPEYVPEA 1032
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
453-541 2.78e-08

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 58.36  E-value: 2.78e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  453 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEpttPKE 532
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAA---AVE 114

                   ....*....
gi 1907070835  533 PEPTTLKEP 541
Cdd:PRK12270   115 DEVTPLRGA 123
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
630-711 2.84e-08

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 58.27  E-value: 2.84e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  630 EPTTPKEPEPTTPKEPEPTTPKepepttPKEPEPTTPKKPEPTTPKEPEPtTPKEPEPTTPKEPEPTTP----KEPEPTT 705
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVIPD------PVDPDPVDPVIPDPVIPDPVDP-DPVDPEPVDPVIPDPTIPdigqSDTPPIT 631

                   ....*.
gi 1907070835  706 RKEPEP 711
Cdd:PRK15313   632 EHQFRP 637
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
646-730 2.86e-08

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 58.27  E-value: 2.86e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  646 EPTTPKEPEPTTPKEPEPTTPKkpepttPKEPEPTTPKEPEPTTPKepepttPKEPEPTtrkEPEPTTPKEPEPTTPKEP 725
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVIPD------PVDPDPVDPVIPDPVIPD------PVDPDPV---DPEPVDPVIPDPTIPDIG 623

                   ....*
gi 1907070835  726 EPTTP 730
Cdd:PRK15313   624 QSDTP 628
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
621-700 3.30e-08

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 57.98  E-value: 3.30e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  621 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 700
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
558-777 3.38e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 57.80  E-value: 3.38e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  558 EPTTLKEPEPTTPKEPepTTLKEPEPTtpkePEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 637
Cdd:PRK08691   373 ENTELQSPSAQTAEKE--TAAKKPQPR----PEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPDEAQTA 446
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  638 EPTTPKePEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEpepttpkEPEPTTRKEPEPTTPKEP 717
Cdd:PRK08691   447 AGTAQT-SAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPIQATPND-------EAVETETFAHEAPAEPFY 518
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  718 EPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQNKPEETTPASEDSDD 777
Cdd:PRK08691   519 GYGFPDNDCPPEDGAEIPPPDWEHAAPADTAGGGADEEAEAGGIGGNNTPSAPPPEFSTE 578
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
422-511 3.42e-08

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 57.89  E-value: 3.42e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  422 EPTTPKEPEPTTPKEPEPTTlkePEPTtpkEPEPTTPKEPEPTTPKEPEPtTPKEPEPTTPKEPEPTTPKEPEPTTPkep 501
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVI---PDPV---DPDPVDPVIPDPVIPDPVDP-DPVDPEPVDPVIPDPTIPDIGQSDTP--- 628
                           90
                   ....*....|
gi 1907070835  502 ePTTPKEPEP 511
Cdd:PRK15313   629 -PITEHQFRP 637
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
414-503 3.42e-08

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 57.89  E-value: 3.42e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  414 EPTTPKEPEPTTPKEPEPTTPkepEPTtlkEPEPTTPKEPEPTTPKEPEPtTPKEPEPTTPKEPEPTTPKEPEPTTPkep 493
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVIP---DPV---DPDPVDPVIPDPVIPDPVDP-DPVDPEPVDPVIPDPTIPDIGQSDTP--- 628
                           90
                   ....*....|
gi 1907070835  494 ePTTPKEPEP 503
Cdd:PRK15313   629 -PITEHQFRP 637
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
581-727 3.47e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 57.57  E-value: 3.47e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  581 PEPTTPKEP-EPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP--KEPEPTTPKEPEPTT 657
Cdd:PRK07994   366 PEPEVPPQSaAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQlqRAQGATKAKKSEPAA 445
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  658 PKEPEPtTPKKPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKEPEPTtrKEPEPTTPKEPEPTTPKEPEP 727
Cdd:PRK07994   446 ASRARP-VNSALERLASVRPAPSAL--EKAPAKKEAYRWKATNPVEV--KKEPVATPKALKKALEHEKTP 510
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
613-692 3.71e-08

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 57.98  E-value: 3.71e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  613 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKE 692
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
498-666 3.84e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 57.57  E-value: 3.84e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  498 PKEPEPTTPKEPEPTTPKEPEPTTPkepEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTT 577
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATA---APTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATK 437
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  578 LKEPEPTTPKEPEPTTTkEPESTTRKEPEPTTPKEPepttPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP--TTPKEPEP 655
Cdd:PRK07994   438 AKKSEPAAASRARPVNS-ALERLASVRPAPSALEKA----PAKKEAYRWKATNPVEVKKEPVATPKALKKalEHEKTPEL 512
                          170
                   ....*....|.
gi 1907070835  656 TTPKEPEPTTP 666
Cdd:PRK07994   513 AAKLAAEAIER 523
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
445-631 3.85e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 57.67  E-value: 3.85e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  445 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 524
Cdd:PRK14948   366 SEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATT--PSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLNLEE 443
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  525 ---------PEPTTPK-----------EPEPTTL------------KEPEPTTP---------------KEPEPTTPKEP 557
Cdd:PRK14948   444 lwqqilaklELPSTRMllsqqaelvslDSNRAVIavspnwlgmvqsRKPLLEQAfakvlgrsiklnlesQSGSASNTAKT 523
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907070835  558 EPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKePEPTTPKEPEP 631
Cdd:PRK14948   524 PPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPT-PSPTKDSSPEE 596
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
426-699 4.17e-08

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 57.65  E-value: 4.17e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  426 PKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPttpkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 505
Cdd:NF033845   543 PKDPTPGPPVDPEPSPEPEPEPTPDPEPSPDPDPEPSP----DPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDS 618
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  506 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTT 585
Cdd:NF033845   619 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 698
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  586 PKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 665
Cdd:NF033845   699 SDSSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 778
                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 1907070835  666 PKKPEPTTPKEPEPTTPKEPEPTTP--KEPEPTTPK 699
Cdd:NF033845   779 DSDSDSDSDSDSDSDSDSDSRVTPPnnEQKAPSNPK 814
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
404-663 4.35e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 57.55  E-value: 4.35e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  404 EPEPTTPKEPEPTTPKEPEPTTPKePEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 483
Cdd:PRK07003   359 EPAVTGGGAPGGGVPARVAGAVPA-PGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATAD 437
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  484 EPEPTTPKePEPTTPKEPEPTTPKEPEPttPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPttlk 563
Cdd:PRK07003   438 RGDDAADG-DAPVPAKANARASADSRCD--ERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDA---- 510
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  564 EPEPTTPKEPEPTTLKEPEPTTPkEPEPTTTKEPE-------------------STTRKEPEPTTPKePEPTTPKEPEPT 624
Cdd:PRK07003   511 RAPAAASREDAPAAAAPPAPEAR-PPTPAAAAPAAraggaaaaldvlrnagmrvSSDRGARAAAAAK-PAAAPAAAPKPA 588
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|
gi 1907070835  625 TPKEPEPT-TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 663
Cdd:PRK07003   589 APRVAVQVpTPRARAATGDAPPNGAARAEQAAESRGAPPP 628
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
450-723 4.74e-08

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 57.65  E-value: 4.74e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  450 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPttpkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 529
Cdd:NF033845   543 PKDPTPGPPVDPEPSPEPEPEPTPDPEPSPDPDPEPSP----DPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDS 618
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  530 PKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTT 609
Cdd:NF033845   619 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 698
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  610 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTT 689
Cdd:NF033845   699 SDSSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 778
                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 1907070835  690 PKEPEPTTPKEPEPTTRKEPEPTTP--KEPEPTTPK 723
Cdd:NF033845   779 DSDSDSDSDSDSDSDSDSDSRVTPPnnEQKAPSNPK 814
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
463-674 4.91e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 57.19  E-value: 4.91e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  463 PTTPKEPEPTTPKEPEPTTPKEPEPTTPkepEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPE 542
Cdd:PRK12323   375 ATAAAAPVAQPAPAAAAPAAAAPAPAAP---PAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  543 PTTPKEPEPTTP---KEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPEsttrkePEPTTPKEPEPTTPK 619
Cdd:PRK12323   452 PAPAAAPAAAARpaaAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPA------PAQPDAAPAGWVAES 525
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1907070835  620 EPEPTTPKEPEPTTPKEPEPTTPkePEPTTPKEPEPTTPkepePTTPKKPEPTTP 674
Cdd:PRK12323   526 IPDPATADPDDAFETLAPAPAAA--PAPRAAAATEPVVA----PRPPRASASGLP 574
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
586-728 5.01e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 57.18  E-value: 5.01e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  586 PKEPEPTTTKEPESTTrkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 665
Cdd:PRK07994   361 PAAPLPEPEVPPQSAA---PAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATK 437
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070835  666 PKKPEPTTPKEPEPtTPKEPEPTTPKEPEPTT----PKEPEPTTRKEPEPTTPKEPEPTTPKEPEPT 728
Cdd:PRK07994   438 AKKSEPAAASRARP-VNSALERLASVRPAPSAlekaPAKKEAYRWKATNPVEVKKEPVATPKALKKA 503
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
418-691 5.16e-08

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 57.26  E-value: 5.16e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  418 PKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPttpkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 497
Cdd:NF033845   543 PKDPTPGPPVDPEPSPEPEPEPTPDPEPSPDPDPEPSP----DPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDS 618
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  498 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTT 577
Cdd:NF033845   619 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 698
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  578 LKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 657
Cdd:NF033845   699 SDSSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 778
                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 1907070835  658 PKEPEPTTPKKPEPTTPKEPEPTTP--KEPEPTTPK 691
Cdd:NF033845   779 DSDSDSDSDSDSDSDSDSDSRVTPPnnEQKAPSNPK 814
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
502-719 5.21e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 57.03  E-value: 5.21e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  502 EPTTPKEPEPTTPKEPepTTPKEPEPTtpkePEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEP 581
Cdd:PRK08691   373 ENTELQSPSAQTAEKE--TAAKKPQPR----PEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPDEAQTA 446
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  582 EPTTPKepeptttkePESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPKE 660
Cdd:PRK08691   447 AGTAQT---------SAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPIQATPnDEAVETETFAHEAPAEPF 517
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  661 PEPTTPKKPEPttPKEPEPTTPKEPEPTTPKEP-EPTTPKEPEPTTRKEPEptTPKEPEP 719
Cdd:PRK08691   518 YGYGFPDNDCP--PEDGAEIPPPDWEHAAPADTaGGGADEEAEAGGIGGNN--TPSAPPP 573
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
519-722 5.39e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 57.19  E-value: 5.39e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  519 PTTPKEPEPTTPKEPEPTTLKEPEPTTPkepEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPE 598
Cdd:PRK12323   375 ATAAAAPVAQPAPAAAAPAAAAPAPAAP---PAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  599 STTRKEPEPTTP---KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP--TTPKEPEPTTPKKPEPTT 673
Cdd:PRK12323   452 PAPAAAPAAAARpaaAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPaqPDAAPAGWVAESIPDPAT 531
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*....
gi 1907070835  674 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTtrkepePTTPKEPEPTTP 722
Cdd:PRK12323   532 ADPDDAFETLAPAPAAAPAPRAAAATEPVVA------PRPPRASASGLP 574
rne PRK10811
ribonuclease E; Reviewed
463-637 5.90e-08

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 57.36  E-value: 5.90e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  463 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTpkEPEPTTPKEPEPTTPKEPEPTTPKE-PEPTTLKEP 541
Cdd:PRK10811   846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVAEPQPEEVVVVEtTHPEVIAAP 923
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  542 EPTTPKEPEPTTPKEPEPTTlKEPEPTTPKEPEPTTLKEPEPTtpkepEPTTTKEPESTTrkepEPTTPKEPEPTTPKEP 621
Cdd:PRK10811   924 VTEQPQVITESDVAVAQEVA-EHAEPVVEPQDETADIEEAAET-----AEVVVAEPEVVA----QPAAPVVAEVAAEVET 993
                          170
                   ....*....|....*.
gi 1907070835  622 EPTTPKEPEPTTPKEP 637
Cdd:PRK10811   994 VTAVEPEVAPAQVPEA 1009
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
408-729 7.01e-08

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 436069 [Multi-domain]  Cd Length: 480  Bit Score: 56.46  E-value: 7.01e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  408 TTPKEPEPTTPKEPEPTTPKEPE--PTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTpKEP 485
Cdd:pfam17823   86 HTPHGTDLSEPATREGAADGAASraLAAAASSSPSSAAQSAPTTIAGLPSLASSAPMAAAPRTNAASNAPTAAASS-TAA 164
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  486 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEP 565
Cdd:pfam17823  165 ASGAPTTAASSAPATLTPASGISTAATATGHPAAGTALAAVGNSSPAAGTVTAAVGTVTPAALATLAAAAGTVASAAGTI 244
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  566 EPTTPKEPEPTTLKE-PEPTTPKEPEPTTTKEPESTTRKepepTTPKEPEPTTPKEPEPT-TPKEPEPTTPKEPEPTTPK 643
Cdd:pfam17823  245 NTGDPHARRLSPAKHmPSDTSARNPAAPSGAQAQGLIIQ----VSTDQPVHNTAGEPTPSpSNTTLEPNTPKSVASTNLA 320
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  644 EPEPTTPKEPEPTTPKEPEPTTPKKPE-----PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPE 718
Cdd:pfam17823  321 VVTTTKAQAKEPSASPVPVLHTSMIPEveatsPTTQPSPLLPTQGAAGPGILLAPDQVATDATAGTASAGPTPRSSGDPK 400
                          330
                   ....*....|.
gi 1907070835  719 PTTPKEPEPTT 729
Cdd:pfam17823  401 MLAMASCQLST 411
rne PRK10811
ribonuclease E; Reviewed
495-685 7.04e-08

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 56.97  E-value: 7.04e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  495 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTlkEPEPTTPKEPEPTTPKEPepttlkePEPTTPKEPE 574
Cdd:PRK10811   846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVAEPQP-------EEVVVVETTH 916
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  575 PTTLKEPEPTTPKEPEPTTTKEPESTTRkEPEPTTPKEPEPTTPKEPEPTT---PKEPEP-TTPKEPEPTTPKEPEPTTP 650
Cdd:PRK10811   917 PEVIAAPVTEQPQVITESDVAVAQEVAE-HAEPVVEPQDETADIEEAAETAevvVAEPEVvAQPAAPVVAEVAAEVETVT 995
                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 1907070835  651 KEPEPTTPKEPEPTTPKKPEPTTP--KEPEPTTPKEP 685
Cdd:PRK10811   996 AVEPEVAPAQVPEATVEHNHATAPmtRAPAPEYVPEA 1032
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
405-556 7.05e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 56.80  E-value: 7.05e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  405 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPtTPKEPEPTTPKE 484
Cdd:PRK07994   385 AAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARP-VNSALERLASVR 463
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907070835  485 PEPTTPKEPepttPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEpepttlKEPEPTTPKEPEPTTPKE 556
Cdd:PRK07994   464 PAPSALEKA----PAKKEAYRWKATNPVEVKKEPVATPKALKKALEHE------KTPELAAKLAAEAIERDP 525
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
406-487 7.09e-08

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 57.12  E-value: 7.09e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  406 EPTTPKEPEPTTPKEPEPTTPK--EPEPTTPKEPEPtTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPkepePTTPK 483
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVIPDpvDPDPVDPVIPDP-VIPDPVDPDPVDPEPVDPVIPDPTIPDIGQSDTP----PITEH 633

                   ....
gi 1907070835  484 EPEP 487
Cdd:PRK15313   634 QFRP 637
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
474-644 7.23e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 56.80  E-value: 7.23e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  474 PKEPEPTTPKEPEPTTPKEPEPTTPkepEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTT 553
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATA---APTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATK 437
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  554 PKEPEPTTLKEPEPtTPKEPEPTTLKEPEPTTPkEPEPtttKEPESTTRKEPEPTTPKEPEPTTPKEPEP--TTPKEPEP 631
Cdd:PRK07994   438 AKKSEPAAASRARP-VNSALERLASVRPAPSAL-EKAP---AKKEAYRWKATNPVEVKKEPVATPKALKKalEHEKTPEL 512
                          170
                   ....*....|...
gi 1907070835  632 TTPKEPEPTTPKE 644
Cdd:PRK07994   513 AAKLAAEAIERDP 525
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
458-731 8.09e-08

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 56.88  E-value: 8.09e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  458 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPttpkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 537
Cdd:NF033845   543 PKDPTPGPPVDPEPSPEPEPEPTPDPEPSPDPDPEPSP----DPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDS 618
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  538 LKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTT 617
Cdd:NF033845   619 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 698
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  618 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 697
Cdd:NF033845   699 SDSSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 778
                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 1907070835  698 PKEPEPTTRKEPEPTTPKEPEPTTP--KEPEPTTPK 731
Cdd:NF033845   779 DSDSDSDSDSDSDSDSDSDSRVTPPnnEQKAPSNPK 814
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
426-599 8.10e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 56.51  E-value: 8.10e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  426 PKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 505
Cdd:PRK14948   363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATT--PSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLN 440
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  506 PKE---------PEPTT------------------------------------------------------PKEPEPTTP 522
Cdd:PRK14948   441 LEElwqqilaklELPSTrmllsqqaelvsldsnraviavspnwlgmvqsrkplleqafakvlgrsiklnleSQSGSASNT 520
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070835  523 KEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTlKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPES 599
Cdd:PRK14948   521 AKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTA-TQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSSPEE 596
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
554-730 8.65e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 56.41  E-value: 8.65e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  554 PKEPEPTTLKEPEPTTPKEPEPTTlkePEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 633
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQAT---AAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATK 437
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  634 PKEPEPTTPKEPEPTtPKEPEPTTPKEPEPTTPKKPepttPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEpeptt 713
Cdd:PRK07994   438 AKKSEPAAASRARPV-NSALERLASVRPAPSALEKA----PAKKEAYRWKATNPVEVKKEPVATPKALKKALEHE----- 507
                          170
                   ....*....|....*..
gi 1907070835  714 pKEPEPTTPKEPEPTTP 730
Cdd:PRK07994   508 -KTPELAAKLAAEAIER 523
PHA03247 PHA03247
large tegument protein UL36; Provisional
495-729 8.73e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 56.87  E-value: 8.73e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  495 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPkepePTTPKEPEPTtlkEPEPTTPKEPE 574
Cdd:PHA03247   255 PAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAP----LALPAPPDPP---PPAPAGDAEEE 327
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  575 PTTLKEPEPTTPKePEPTTTKEPESTTRKEPEPTTPKEPEPTT------PKEPEPTTPKEPEPTTpKEPEPTTPKEPEPT 648
Cdd:PHA03247   328 DDEDGAMEVVSPL-PRPRQHYPLGFPKRRRPTWTPPSSLEDLSagrhhpKRASLPTRKRRSARHA-ATPFARGPGGDDQT 405
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  649 TPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPT-TPKEPE-PTTPKEPEPTTPkePEPTTRKEPEPTTPKEPEP-TTPKEP 725
Cdd:PHA03247   406 RPAAPVPASVPTPAPTPVPASAPPPPATPLPSaEPGSDDgPAPPPERQPPAP--ATEPAPDDPDDATRKALDAlRERRPP 483

                   ....
gi 1907070835  726 EPTT 729
Cdd:PHA03247   484 EPPG 487
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
605-684 8.81e-08

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 56.82  E-value: 8.81e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  605 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKE 684
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
NESP55 pfam06390
Neuroendocrine-specific golgi protein P55 (NESP55); This family consists of several mammalian ...
485-655 9.09e-08

Neuroendocrine-specific golgi protein P55 (NESP55); This family consists of several mammalian neuroendocrine-specific golgi protein P55 (NESP55) sequences. NESP55 is a novel member of the chromogranin family and is a soluble, acidic, heat-stable secretory protein that is expressed exclusively in endocrine and nervous tissues, although less widely than chromogranins.


Pssm-ID: 115071 [Multi-domain]  Cd Length: 261  Bit Score: 54.87  E-value: 9.09e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  485 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLK 563
Cdd:pfam06390   81 PEPSEPESDHEDEDFEPELARPECLEYDEDDfDTETDSETEPESDIESETEFETEPETEPDTAPTTEPETEPEDEPGPVV 160
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  564 EPEPTTPKE--PEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKEPEPT 640
Cdd:pfam06390  161 PKGATFHQSltERLHALKLQSADASPRRAPPSTQEPESAREGEEPERGPLDKDPRDPEEeEEEKEEEKQQPHRCKPKKPA 240
                          170
                   ....*....|....*
gi 1907070835  641 TPKEPEPTTPKEPEP 655
Cdd:pfam06390  241 RRRDPSPESPPKKGA 255
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
629-704 1.07e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 56.44  E-value: 1.07e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070835  629 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPT 704
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAV 113
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
415-634 1.10e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 56.04  E-value: 1.10e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  415 PTTPKEPEPTTPKEPEPTTPKEPEPTTlkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 494
Cdd:PRK12323   375 ATAAAAPVAQPAPAAAAPAAAAPAPAA---PPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  495 PTTPKEPEPTTPKEPEPttpkePEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPttlkepEPTTPKEPE 574
Cdd:PRK12323   452 PAPAAAPAAAARPAAAG-----PRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAP------AQPDAAPAG 520
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  575 PTTLKEPEPTTPKEPEPTTTKEPESTTrkEPEPTTPKEPEPTTPkepePTTPKEPEPTTP 634
Cdd:PRK12323   521 WVAESIPDPATADPDDAFETLAPAPAA--APAPRAAAATEPVVA----PRPPRASASGLP 574
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
403-675 1.12e-07

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 56.11  E-value: 1.12e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  403 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPttlkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 482
Cdd:NF033845   544 KDPTPGPPVDPEPSPEPEPEPTPDPEPSPDPDPEPSP----DPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDSD 619
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  483 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTL 562
Cdd:NF033845   620 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 699
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  563 KEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 642
Cdd:NF033845   700 DSSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 779
                          250       260       270
                   ....*....|....*....|....*....|....*
gi 1907070835  643 KEPEPTTPKEPEPTTPKEPEPTTPKKPE--PTTPK 675
Cdd:NF033845   780 SDSDSDSDSDSDSDSDSDSRVTPPNNEQkaPSNPK 814
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
445-524 1.19e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 56.44  E-value: 1.19e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  445 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 524
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
470-559 1.21e-07

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 56.35  E-value: 1.21e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  470 EPTTPKEPEPTTPKEPEPTTPKepepttPKEPEPTTPKEPEPTTPKEPEPtTPKEPEPTTPKEPEPTTLKEPEPTTPkep 549
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVIPD------PVDPDPVDPVIPDPVIPDPVDP-DPVDPEPVDPVIPDPTIPDIGQSDTP--- 628
                           90
                   ....*....|
gi 1907070835  550 ePTTPKEPEP 559
Cdd:PRK15313   629 -PITEHQFRP 637
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
430-519 1.21e-07

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 56.35  E-value: 1.21e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  430 EPTTPKEPEPTTLKEPEPTTPKepepttPKEPEPTTPKEPEPTTPKEPEPtTPKEPEPTTPKEPEPTTPKEPEPTTPkep 509
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVIPD------PVDPDPVDPVIPDPVIPDPVDP-DPVDPEPVDPVIPDPTIPDIGQSDTP--- 628
                           90
                   ....*....|
gi 1907070835  510 ePTTPKEPEP 519
Cdd:PRK15313   629 -PITEHQFRP 637
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
490-660 1.46e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 55.64  E-value: 1.46e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  490 PKEPEPTTPKEPEPTTPKEPEPTTPkepEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTT 569
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATA---APTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATK 437
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  570 PKEPEPTTLKEPEPtTPKEPEPTTTKEPESTTRKEPepttPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP--TTPKEPEP 647
Cdd:PRK07994   438 AKKSEPAAASRARP-VNSALERLASVRPAPSALEKA----PAKKEAYRWKATNPVEVKKEPVATPKALKKalEHEKTPEL 512
                          170
                   ....*....|...
gi 1907070835  648 TTPKEPEPTTPKE 660
Cdd:PRK07994   513 AAKLAAEAIERDP 525
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
446-655 1.48e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 55.87  E-value: 1.48e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  446 EPTTPKEPEPTTPKEPepTTPKEPEPTtpkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 525
Cdd:PRK08691   373 ENTELQSPSAQTAEKE--TAAKKPQPR----PEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPDEAQTA 446
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  526 EPTTPKePEPTTLKEPEPTTPKEPEPTTPKEPEpttlKEPEPTTPKEPEPTtlkePEPTTP-KEPEPTTTKEPESTTRKE 604
Cdd:PRK08691   447 AGTAQT-SAKSIQTASEAETPPENQVSKNKAAD----NETDAPLSEVPSEN----PIQATPnDEAVETETFAHEAPAEPF 517
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070835  605 PEPTTPKEPEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKEP----EPTTPKEPEP 655
Cdd:PRK08691   518 YGYGFPDNDCPPEDGAEIPPPDWEhAAPADTAGGGADEEAEAggigGNNTPSAPPP 573
rne PRK10811
ribonuclease E; Reviewed
543-698 1.84e-07

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 55.43  E-value: 1.84e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  543 PTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEP----EPTTTKEPESTTRKEPEPTTPKEPEPTTP 618
Cdd:PRK10811   846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAevveEPVVVAEPQPEEVVVVETTHPEVIAAPVT 925
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  619 KEPEPTTPKEP--EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP-EPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEP 695
Cdd:PRK10811   926 EQPQVITESDVavAQEVAEHAEPVVEPQDETADIEEAAETAEVVVaEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQ 1005

                   ...
gi 1907070835  696 TTP 698
Cdd:PRK10811  1006 VPE 1008
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
631-726 2.13e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 55.20  E-value: 2.13e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  631 PTTPKEPEPTTPKEPEPTTPKepepTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKE-P 709
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRPT----PAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAiP 437
                           90
                   ....*....|....*..
gi 1907070835  710 EPTTPKEPEPTTPKEPE 726
Cdd:PRK14950   438 VDEKPKYTPPAPPKEEE 454
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
605-679 2.90e-07

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 54.81  E-value: 2.90e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070835  605 PEPTTPKEPEPTTPK--EPEPTTPKEPEPTTPKEPEPtTPKEPEPTTPKEPEPTTPKEPEPTTPkkpePTTPKEPEP 679
Cdd:PRK15313   566 PDPVDPVIPDPVIPDpvDPDPVDPVIPDPVIPDPVDP-DPVDPEPVDPVIPDPTIPDIGQSDTP----PITEHQFRP 637
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
589-667 2.95e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 54.90  E-value: 2.95e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070835  589 PEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 667
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDE 116
rne PRK10811
ribonuclease E; Reviewed
519-709 3.18e-07

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 54.66  E-value: 3.18e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  519 PTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTlkEPEPTTPKEPEPTTLKEPEPTTPKEpepTTTKEPE 598
Cdd:PRK10811   846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVAEPQPEEVVVVE---TTHPEVI 920
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  599 STTRKEPEPTTPKEPEPT---TPKEPEPTTPKEPEPTTPKEPEPTtpkepEPTTPKEPEP-TTPKEPEPTTPKKPEPTTP 674
Cdd:PRK10811   921 AAPVTEQPQVITESDVAVaqeVAEHAEPVVEPQDETADIEEAAET-----AEVVVAEPEVvAQPAAPVVAEVAAEVETVT 995
                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 1907070835  675 KEPEPTTPKEPEPTTPKEPEPTTP--KEPEPTTRKEP 709
Cdd:PRK10811   996 AVEPEVAPAQVPEATVEHNHATAPmtRAPAPEYVPEA 1032
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
434-607 3.29e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 54.58  E-value: 3.29e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  434 PKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 513
Cdd:PRK14948   363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATT--PSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLN 440
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  514 PKE---------PEPTT------------------------------------------------------PKEPEPTTP 530
Cdd:PRK14948   441 LEElwqqilaklELPSTrmllsqqaelvsldsnraviavspnwlgmvqsrkplleqafakvlgrsiklnleSQSGSASNT 520
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070835  531 KEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTlkePEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEP 607
Cdd:PRK14948   521 AKTPPPPQKSPPPPAPTPPLPQPTATAPPPT---PPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSSP 594
rne PRK10811
ribonuclease E; Reviewed
447-612 3.47e-07

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 54.66  E-value: 3.47e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  447 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTpkEPEPTTPKEPEPTTPKEPEPTTPKE-PEPTTPKEP 525
Cdd:PRK10811   846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVAEPQPEEVVVVEtTHPEVIAAP 923
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  526 EPTTPKEPEPTTLKEPEPTTPkEPEPTTPKEPEPTTLKEPEPTT---PKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTR 602
Cdd:PRK10811   924 VTEQPQVITESDVAVAQEVAE-HAEPVVEPQDETADIEEAAETAevvVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVA 1002
                          170
                   ....*....|
gi 1907070835  603 KEPEPTTPKE 612
Cdd:PRK10811  1003 PAQVPEATVE 1012
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
437-516 3.59e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 54.90  E-value: 3.59e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  437 PEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 516
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
607-702 3.79e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 54.43  E-value: 3.79e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  607 PTTPKEPEPTTPKEPEPTTPKepepTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKE-P 685
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRPT----PAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAiP 437
                           90
                   ....*....|....*..
gi 1907070835  686 EPTTPKEPEPTTPKEPE 702
Cdd:PRK14950   438 VDEKPKYTPPAPPKEEE 454
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
421-510 4.23e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 54.05  E-value: 4.23e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  421 PEPTTPKEPEPTtPKEPEPTTLKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKE-PEPTTP 498
Cdd:PRK14950   366 PQPAKPTAAAPS-PVRPTPAPSTRPKAAAAANIPPKEPVrETATPPPVPPRPVAP--PVPHTPESAPKLTRAAiPVDEKP 442
                           90
                   ....*....|..
gi 1907070835  499 KEPEPTTPKEPE 510
Cdd:PRK14950   443 KYTPPAPPKEEE 454
DUF4045 pfam13254
Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. ...
551-719 4.49e-07

Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length.


Pssm-ID: 433066 [Multi-domain]  Cd Length: 415  Bit Score: 53.63  E-value: 4.49e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  551 PTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPEStTRKEPEPTTPKEPEPTTPKEPEPTTPKEPE 630
Cdd:pfam13254  197 PNSFKEVTPVGLMRSPAPGGHSKSPSVSGISADSSPTKEEPSEEADTLS-TDKEQSPAPTSASEPPPKTKELPKDSEEPA 275
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  631 PTTPKEPEPTTPKEPEptTPKEPEPTTPKEPEPTTPKKPEPTTPKepePTTPKEPEPTTPKEPEPTTPKEPEPTTRK-EP 709
Cdd:pfam13254  276 APSKSAEASTEKKEPD--TESSPETSSEKSAPSLLSPVSKASIDK---PLSSPDRDPLSPKPKPQSPPKDFRANLRSrEV 350
                          170
                   ....*....|
gi 1907070835  710 EPTTPKEPEP 719
Cdd:pfam13254  351 PKDKSKKDEP 360
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
444-695 4.51e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 54.09  E-value: 4.51e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  444 EPEPT----TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 519
Cdd:PRK07003   359 EPAVTgggaPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADR 438
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  520 TTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPtttkEPES 599
Cdd:PRK07003   439 GDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDA----RAPA 514
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  600 TTRKEPEPTTPKEPEPTTPkEPEPTTPKEP------------------EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 661
Cdd:PRK07003   515 AASREDAPAAAAPPAPEAR-PPTPAAAAPAaraggaaaaldvlrnagmRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVA 593
                          250       260       270
                   ....*....|....*....|....*....|....*
gi 1907070835  662 EPT-TPKKPEPTTPKEPEPTTPKEPEPTTPKEPEP 695
Cdd:PRK07003   594 VQVpTPRARAATGDAPPNGAARAEQAAESRGAPPP 628
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
565-727 4.56e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 54.20  E-value: 4.56e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  565 PEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTrkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE------ 638
Cdd:PRK14948   366 SEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAAT--TPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPslnlee 443
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  639 -----------PTT------------------------------------------------------PKEPEPTTPKEP 653
Cdd:PRK14948   444 lwqqilaklelPSTrmllsqqaelvsldsnraviavspnwlgmvqsrkplleqafakvlgrsiklnleSQSGSASNTAKT 523
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907070835  654 EPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKePEPTTPKEPEP 727
Cdd:PRK14948   524 PPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPT-PSPTKDSSPEE 596
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
546-708 4.67e-07

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 53.83  E-value: 4.67e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  546 PKEPEPTT-PKEPEPTTLKEPEPTTPKEP-EPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTP----K 619
Cdd:PRK13108   295 ALEREPAElAAAAVASAASAVGPVGPGEPnQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEAdierE 374
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  620 EPEPTTPKEPE-PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKkpepTTPKEPEPTTPKEPEPtTPKEPEPTTP 698
Cdd:PRK13108   375 QPGDLAGQAPAaHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPI----PDPAKPDELAVAGPGD-DPAEPDGIRR 449
                          170
                   ....*....|
gi 1907070835  699 KEPEPTTRKE 708
Cdd:PRK13108   450 QDDFSSRRRR 459
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
645-724 4.83e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 54.13  E-value: 4.83e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  645 PEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKE 724
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
421-500 4.91e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 54.13  E-value: 4.91e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  421 PEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 500
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
653-731 4.99e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 54.13  E-value: 4.99e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070835  653 PEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPK 731
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDE 116
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
522-784 5.47e-07

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 54.18  E-value: 5.47e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  522 PKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPttlkEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTT 601
Cdd:NF033845   543 PKDPTPGPPVDPEPSPEPEPEPTPDPEPSPDPDPEPSP----DPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDS 618
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  602 RKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTT 681
Cdd:NF033845   619 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 698
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  682 PKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEI 761
Cdd:NF033845   699 SDSSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 778
                          250       260
                   ....*....|....*....|....
gi 1907070835  762 QNKPEETTPASEDSD-DSKTTLKP 784
Cdd:NF033845   779 DSDSDSDSDSDSDSDsDSDSRVTP 802
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
581-660 5.57e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 54.13  E-value: 5.57e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  581 PEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 660
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
438-647 5.82e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 53.94  E-value: 5.82e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  438 EPTTLKEPEPTTPKEPepTTPKEPEPTTPKEPEPTTPKEPE----PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 513
Cdd:PRK08691   373 ENTELQSPSAQTAEKE--TAAKKPQPRPEAETAQTPVQTASaaamPSEGKTAGPVSNQENNDVPPWEDAPDEAQTAAGTA 450
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  514 PKePEPTTPKEPEPTTPKEPEPTTLKEPEpttpKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTT 593
Cdd:PRK08691   451 QT-SAKSIQTASEAETPPENQVSKNKAAD----NETDAPLSEVPSENPIQATPNDEAVETETFAHEAPAEPFYGYGFPDN 525
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1907070835  594 TKEPESTTRKEPEPTTPKEPEPTTPKEPEpttpKEPEPTTPKEPEptTPKEPEP 647
Cdd:PRK08691   526 DCPPEDGAEIPPPDWEHAAPADTAGGGAD----EEAEAGGIGGNN--TPSAPPP 573
rne PRK10811
ribonuclease E; Reviewed
567-730 6.43e-07

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 53.89  E-value: 6.43e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  567 PTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTpkEPEPTTPKEPEPTTpkEPEPTTPKEPEPTTPKEPE 646
Cdd:PRK10811   846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVA--EPQPEEVVVVETTHPEVIA 921
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  647 PTTPKEPEPTTPKEP--EPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEP-EPTTPKEPEPTTRKEPEPTTPKEPEPTTPK 723
Cdd:PRK10811   922 APVTEQPQVITESDVavAQEVAEHAEPVVEPQDETADIEEAAETAEVVVaEPEVVAQPAAPVVAEVAAEVETVTAVEPEV 1001

                   ....*..
gi 1907070835  724 EPEPTTP 730
Cdd:PRK10811  1002 APAQVPE 1008
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
469-565 7.12e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 53.74  E-value: 7.12e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  469 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTlkepepttpke 548
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAA----------- 106
                           90
                   ....*....|....*..
gi 1907070835  549 PEPTTPKEPEPTTLKEP 565
Cdd:PRK12270   107 APAAAAVEDEVTPLRGA 123
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
429-508 7.18e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 53.74  E-value: 7.18e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  429 PEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 508
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
399-564 7.55e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 53.43  E-value: 7.55e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  399 STTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKE---------P 469
Cdd:PRK14948   374 PANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLNLEElwqqilaklE 453
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  470 EPTT------------------------------------------------------PKEPEPTTPKEPEPTTPKEPEP 495
Cdd:PRK14948   454 LPSTrmllsqqaelvsldsnraviavspnwlgmvqsrkplleqafakvlgrsiklnleSQSGSASNTAKTPPPPQKSPPP 533
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070835  496 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTlkePEPTTPKEPEPTTPKEPEPTTLKE 564
Cdd:PRK14948   534 PAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS---PPPPIPEEPTPSPTKDSSPEEIDK 599
PRK10263 PRK10263
DNA translocase FtsK; Provisional
406-576 7.74e-07

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 53.55  E-value: 7.74e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  406 EPTTPKEPEPTTPKEPEPTTPKEPEptTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPttPKEPEPTtpKEPEPTTPkEP 485
Cdd:PRK10263   399 QPVQPQQPYYAPAAEQPAQQPYYAP--APEQPAQQPYYAPAPEQPVAGNAWQAEEQQS--TFAPQST--YQTEQTYQ-QP 471
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  486 EPTTPKEPEPtTPKEPEPTTPKEP--EPTTPKEPEPTTPKEPEPTTPKEPEP-TTLKEPEPTTPKEPEPTTPKEPEPTTL 562
Cdd:PRK10263   472 AAQEPLYQQP-QPVEQQPVVEPEPvvEETKPARPPLYYFEEVEEKRAREREQlAAWYQPIPEPVKEPEPIKSSLKAPSVA 550
                          170
                   ....*....|....
gi 1907070835  563 KEPepttPKEPEPT 576
Cdd:PRK10263   551 AVP----PVEAAAA 560
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
493-594 7.82e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 53.74  E-value: 7.82e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  493 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTlkePEPTTPKE 572
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAA---APAAAAVE 114
                           90       100
                   ....*....|....*....|....*..
gi 1907070835  573 PEPTTLKEPEPTTPKEPE-----PTTT 594
Cdd:PRK12270   115 DEVTPLRGAAAAVAKNMDaslevPTAT 141
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
516-709 7.97e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 53.31  E-value: 7.97e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  516 EPEPTTPKEPEPTTPKEPePTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTtPKEPEPTTTK 595
Cdd:PRK07003   359 EPAVTGGGAPGGGVPARV-AGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAP-PAAPAPPATA 436
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  596 EPESTTRKEPEPTTPKEPEPTTPKEPEPttPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPK 675
Cdd:PRK07003   437 DRGDDAADGDAPVPAKANARASADSRCD--ERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPA 514
                          170       180       190
                   ....*....|....*....|....*....|....
gi 1907070835  676 EPepttPKEPEPTTPKEPEPTTPkEPEPTTRKEP 709
Cdd:PRK07003   515 AA----SREDAPAAAAPPAPEAR-PPTPAAAAPA 543
PRK10263 PRK10263
DNA translocase FtsK; Provisional
410-731 8.14e-07

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 53.55  E-value: 8.14e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  410 PKEPEPTTPKEPEPTTPkEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPE-------PTTPKEPEPTTPKEPEPTTP 482
Cdd:PRK10263   366 PQTGEPVIAPAPEGYPQ-QSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQqpyyapaPEQPAQQPYYAPAPEQPVAG 444
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  483 KE---PEPTTPKEPEPTTPKE---PEPTTPKEPE-PTTPKEPEPTTPKEP--EPTTPKEPEPTTLKEPEPTTPKEPEPTT 553
Cdd:PRK10263   445 NAwqaEEQQSTFAPQSTYQTEqtyQQPAAQEPLYqQPQPVEQQPVVEPEPvvEETKPARPPLYYFEEVEEKRAREREQLA 524
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  554 P-KEPEPTTLKEPEPTTPKEPEPTTLKEP--EPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTT----PKEPEPTTP 626
Cdd:PRK10263   525 AwYQPIPEPVKEPEPIKSSLKAPSVAAVPpvEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSggprPQVKEGIGP 604
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  627 KEPEPTTPKEP-----------------------------------------------------------------EPTT 641
Cdd:PRK10263   605 QLPRPKRIRVPtrrelasygiklpsqraaeekareaqrnqydsgdqynddeidamqqdelarqfaqtqqqrygeqyQHDV 684
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  642 PKEPEPT-----------------------------------------------TPKEP--EPTTPKEPEPTTPKKPEPT 672
Cdd:PRK10263   685 PVNAEDAdaaaeaelarqfaqtqqqrysgeqpaganpfslddfefspmkallddGPHEPlfTPIVEPVQQPQQPVAPQQQ 764
                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907070835  673 TPKEPEPTTP----KEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPK 731
Cdd:PRK10263   765 YQQPQQPVAPqpqyQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQ 827
PRK10819 PRK10819
transport protein TonB; Provisional
413-542 8.15e-07

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 51.61  E-value: 8.15e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  413 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKEPEPTTPKEPEPTtpK 491
Cdd:PRK10819    42 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPvVIPKPEPKPKPKPKPKPKPVKKVEEQPK--R 119
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  492 EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKePEPTTPKEPEPTTLKEPE 542
Cdd:PRK10819   120 EVKPVEPRPASPFENTAPARPTSSTATAAASK-PVTSVSSGPRALSRNQPQ 169
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
401-577 8.33e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 53.34  E-value: 8.33e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  401 TRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTP---KEPEPTTPKEP 477
Cdd:PRK12323   398 APAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARpaaAGPRPVAAAAA 477
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  478 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEP 557
Cdd:PRK12323   478 AAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAAT 557
                          170       180
                   ....*....|....*....|
gi 1907070835  558 EPTtlkePEPTTPKEPEPTT 577
Cdd:PRK12323   558 EPV----VAPRPPRASASGL 573
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
445-534 8.62e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 53.27  E-value: 8.62e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  445 PEPTTPKEPEPTtPKEPEPTTPKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKE-PEPTTP 522
Cdd:PRK14950   366 PQPAKPTAAAPS-PVRPTPAPSTRPKAAAAANIPPKEPVrETATPPPVPPRPVAP--PVPHTPESAPKLTRAAiPVDEKP 442
                           90
                   ....*....|..
gi 1907070835  523 KEPEPTTPKEPE 534
Cdd:PRK14950   443 KYTPPAPPKEEE 454
NESP55 pfam06390
Neuroendocrine-specific golgi protein P55 (NESP55); This family consists of several mammalian ...
565-732 8.78e-07

Neuroendocrine-specific golgi protein P55 (NESP55); This family consists of several mammalian neuroendocrine-specific golgi protein P55 (NESP55) sequences. NESP55 is a novel member of the chromogranin family and is a soluble, acidic, heat-stable secretory protein that is expressed exclusively in endocrine and nervous tissues, although less widely than chromogranins.


Pssm-ID: 115071 [Multi-domain]  Cd Length: 261  Bit Score: 51.79  E-value: 8.78e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  565 PEPTTPKEPEPTTLKEPEPTTPKEPEPTTTK-EPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 643
Cdd:pfam06390   81 PEPSEPESDHEDEDFEPELARPECLEYDEDDfDTETDSETEPESDIESETEFETEPETEPDTAPTTEPETEPEDEPGPVV 160
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  644 EPEPT---TPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEpTTPKEPEPTTPKE-PEPTTRKEPEPTTPKEPEP 719
Cdd:pfam06390  161 PKGATfhqSLTERLHALKLQSADASPRRAPPSTQEPESAREGEEPE-RGPLDKDPRDPEEeEEEKEEEKQQPHRCKPKKP 239
                          170
                   ....*....|...
gi 1907070835  720 TTPKEPEPTTPKK 732
Cdd:pfam06390  240 ARRRDPSPESPPK 252
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
593-676 8.88e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 53.36  E-value: 8.88e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  593 TTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPT 672
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAV 113

                   ....
gi 1907070835  673 TPKE 676
Cdd:PRK12270   114 EDEV 117
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
605-694 8.92e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 52.89  E-value: 8.92e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  605 PEPTTPKEPEPTtPKEPEPTTPKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPkePEPTTPKKPEPTTPKE-PEPTTP 682
Cdd:PRK14950   366 PQPAKPTAAAPS-PVRPTPAPSTRPKAAAAANIPPKEPVrETATPPPVPPRPVAP--PVPHTPESAPKLTRAAiPVDEKP 442
                           90
                   ....*....|..
gi 1907070835  683 KEPEPTTPKEPE 694
Cdd:PRK14950   443 KYTPPAPPKEEE 454
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
407-502 9.31e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 52.89  E-value: 9.31e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  407 PTTPKEPEPTTPKEPEPTTPKepepTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE-P 485
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRPT----PAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAiP 437
                           90
                   ....*....|....*..
gi 1907070835  486 EPTTPKEPEPTTPKEPE 502
Cdd:PRK14950   438 VDEKPKYTPPAPPKEEE 454
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
443-715 9.51e-07

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 53.02  E-value: 9.51e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  443 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTtpKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 522
Cdd:NF033845   544 KDPTPGPPVDPEPSPEPEPEPTPDPEPSPD--PDPEPSPDPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDSDSD 621
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  523 KEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTR 602
Cdd:NF033845   622 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 701
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  603 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTP 682
Cdd:NF033845   702 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 781
                          250       260       270
                   ....*....|....*....|....*....|...
gi 1907070835  683 KEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPK 715
Cdd:NF033845   782 SDSDSDSDSDSDSDSDSRVTPPNNEQKAPSNPK 814
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
413-492 1.01e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 53.36  E-value: 1.01e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  413 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 492
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
402-593 1.02e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 52.96  E-value: 1.02e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  402 RKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPtt 481
Cdd:PRK12323   391 APAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAG-- 468
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  482 pkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKE--PEPTTPKEPEPTTPKEPEP 559
Cdd:PRK12323   469 ---PRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAEsiPDPATADPDDAFETLAPAP 545
                          170       180       190
                   ....*....|....*....|....*....|....
gi 1907070835  560 TTlkEPEPTTPKEPEPTtlkePEPTTPKEPEPTT 593
Cdd:PRK12323   546 AA--APAPRAAAATEPV----VAPRPPRASASGL 573
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
637-716 1.02e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 53.36  E-value: 1.02e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  637 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKE 716
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
615-718 1.05e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 52.89  E-value: 1.05e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  615 PTTPKEPEPTTPKEPEPTTPKePEPTTpkepePTTPKEPEPTTPKEPEPTTPKKPEPTtpkePEPTTPkePEPTTPKEPE 694
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRPT-PAPST-----RPKAAAAANIPPKEPVRETATPPPVP----PRPVAP--PVPHTPESAP 429
                           90       100
                   ....*....|....*....|....*
gi 1907070835  695 PTTPKE-PEPTTRKEPEPTTPKEPE 718
Cdd:PRK14950   430 KLTRAAiPVDEKPKYTPPAPPKEEE 454
NESP55 pfam06390
Neuroendocrine-specific golgi protein P55 (NESP55); This family consists of several mammalian ...
445-615 1.09e-06

Neuroendocrine-specific golgi protein P55 (NESP55); This family consists of several mammalian neuroendocrine-specific golgi protein P55 (NESP55) sequences. NESP55 is a novel member of the chromogranin family and is a soluble, acidic, heat-stable secretory protein that is expressed exclusively in endocrine and nervous tissues, although less widely than chromogranins.


Pssm-ID: 115071 [Multi-domain]  Cd Length: 261  Bit Score: 51.40  E-value: 1.09e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  445 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP--KEPEPTTPKEPEPTT 521
Cdd:pfam06390   81 PEPSEPESDHEDEDFEPELARPECLEYDEDDfDTETDSETEPESDIESETEFETEPETEPDTAptTEPETEPEDEPGPVV 160
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  522 PKEPEPTTPKEPEPTTLKEPEP-TTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPEST 600
Cdd:pfam06390  161 PKGATFHQSLTERLHALKLQSAdASPRRAPPSTQEPESAREGEEPERGPLDKDPRDPEEEEEEKEEEKQQPHRCKPKKPA 240
                          170
                   ....*....|....*
gi 1907070835  601 TRKEPEPTTPKEPEP 615
Cdd:pfam06390  241 RRRDPSPESPPKKGA 255
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
405-484 1.14e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 52.97  E-value: 1.14e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  405 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 484
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
494-570 1.18e-06

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 52.88  E-value: 1.18e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070835  494 EPTTPKEPEPTTPKEPEPTTPKepepttPKEPEPTTPKEPEPtTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTP 570
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVIPD------PVDPDPVDPVIPDP-VIPDPVDPDPVDPEPVDPVIPDPTIPDIGQSDTP 628
PRK10819 PRK10819
transport protein TonB; Provisional
605-721 1.20e-06

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 51.22  E-value: 1.20e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  605 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKKPEPTTPKEPEPTTPK 683
Cdd:PRK10819    42 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPvVIPKPEPKPKPKPKPKPKPVKKVEEQPKREV 121
                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1907070835  684 EpepttPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTT 721
Cdd:PRK10819   122 K-----PVEPRPASPFENTAPARPTSSTATAAASKPVT 154
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
463-558 1.25e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 52.50  E-value: 1.25e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  463 PTTPKEPEPTTPKEPEPTTPKepepTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKE-P 541
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRPT----PAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAiP 437
                           90
                   ....*....|....*..
gi 1907070835  542 EPTTPKEPEPTTPKEPE 558
Cdd:PRK14950   438 VDEKPKYTPPAPPKEEE 454
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
621-728 1.25e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 52.79  E-value: 1.25e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  621 PEPTTPKEPEPTTP---KEPEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPT 696
Cdd:PRK14951   376 AEKKTPARPEAAAPaaaPVAQAAAAPAPAAAPAAAaSAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQA 455
                           90       100       110
                   ....*....|....*....|....*....|..
gi 1907070835  697 TPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPT 728
Cdd:PRK14951   456 APETVAIPVRVAPEPAVASAAPAPAAAPAAAR 487
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
431-526 1.27e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 52.50  E-value: 1.27e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  431 PTTPKEPEPTTLKEPEPTTPKepepTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE-P 509
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRPT----PAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAiP 437
                           90
                   ....*....|....*..
gi 1907070835  510 EPTTPKEPEPTTPKEPE 526
Cdd:PRK14950   438 VDEKPKYTPPAPPKEEE 454
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
405-479 1.39e-06

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 52.88  E-value: 1.39e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070835  405 PEPTTPKEPEPTTPK--EPEPTTPKEPEPTTPKEPEPTTLkEPEPTTPKEPEPTTPKEPEPTTPkepePTTPKEPEP 479
Cdd:PRK15313   566 PDPVDPVIPDPVIPDpvDPDPVDPVIPDPVIPDPVDPDPV-DPEPVDPVIPDPTIPDIGQSDTP----PITEHQFRP 637
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
570-732 1.56e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 52.27  E-value: 1.56e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  570 PKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 649
Cdd:PRK14948   361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLN 440
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  650 PKE---------PEPTT------------------------------------------------------PKEPEPTTP 666
Cdd:PRK14948   441 LEElwqqilaklELPSTrmllsqqaelvsldsnraviavspnwlgmvqsrkplleqafakvlgrsiklnleSQSGSASNT 520
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070835  667 KKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPKK 732
Cdd:PRK14948   521 AKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTP 586
NESP55 pfam06390
Neuroendocrine-specific golgi protein P55 (NESP55); This family consists of several mammalian ...
501-687 2.06e-06

Neuroendocrine-specific golgi protein P55 (NESP55); This family consists of several mammalian neuroendocrine-specific golgi protein P55 (NESP55) sequences. NESP55 is a novel member of the chromogranin family and is a soluble, acidic, heat-stable secretory protein that is expressed exclusively in endocrine and nervous tissues, although less widely than chromogranins.


Pssm-ID: 115071 [Multi-domain]  Cd Length: 261  Bit Score: 50.63  E-value: 2.06e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  501 PEPTTPKEPEPTTPKEPEPTTPKEPEpTTPKEPEPTTLKEPEPTTPKEPEptTPKEPEPTTLKEPEPTTPKEPEPTtlKE 580
Cdd:pfam06390   81 PEPSEPESDHEDEDFEPELARPECLE-YDEDDFDTETDSETEPESDIESE--TEFETEPETEPDTAPTTEPETEPE--DE 155
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  581 PEPTTPKEPE-PTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEpTTPKEPEPTTPKEPEpttpkEPEPTTPK 659
Cdd:pfam06390  156 PGPVVPKGATfHQSLTERLHALKLQSADASPRRAPPSTQEPESAREGEEPE-RGPLDKDPRDPEEEE-----EEKEEEKQ 229
                          170       180
                   ....*....|....*....|....*...
gi 1907070835  660 EPEPTTPKKPEPTTPKEPEPTTPKEPEP 687
Cdd:pfam06390  230 QPHRCKPKKPARRRDPSPESPPKKGAIP 257
PHA03247 PHA03247
large tegument protein UL36; Provisional
413-617 2.28e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.25  E-value: 2.28e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  413 PEPTTPKEPEPTTPKEPEPTTPKEPEP---------TTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP--------- 474
Cdd:PHA03247   269 PETARGATGPPPPPEAAAPNGAAAPPDgvwgaalagAPLALPAPPDPPPPAPAGDAEEEDDEDGAMEVVSPlprprqhyp 348
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  475 ------KEPEPTTPKEPEPTTPKEPEPttPKEPEPTTPKEpepTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKE 548
Cdd:PHA03247   349 lgfpkrRRPTWTPPSSLEDLSAGRHHP--KRASLPTRKRR---SARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPV 423
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907070835  549 P--EPTTPKEPEPTtlkePEPTTPKEPEPTtlkePEPTTPKEPEPTTTKEPESTTRKEPEP-TTPKEPEPTT 617
Cdd:PHA03247   424 PasAPPPPATPLPS----AEPGSDDGPAPP----PERQPPAPATEPAPDDPDDATRKALDAlRERRPPEPPG 487
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
453-573 2.29e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 51.64  E-value: 2.29e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  453 PEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 531
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPA 453
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1907070835  532 EPEPTTLKEPEPTTPkEPEPTTPKEPePTTLKEPEPTTPKEP 573
Cdd:PRK14951   454 QAAPETVAIPVRVAP-EPAVASAAPA-PAAAPAAARLTPTEE 493
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
479-574 2.56e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 51.73  E-value: 2.56e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  479 PTTPKEPEPTTPKEPEPTTPKepepTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKE-P 557
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRPT----PAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAiP 437
                           90
                   ....*....|....*..
gi 1907070835  558 EPTTLKEPEPTTPKEPE 574
Cdd:PRK14950   438 VDEKPKYTPPAPPKEEE 454
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
405-522 2.56e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 51.64  E-value: 2.56e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  405 PEPTTPKEPEPTTP-KEPEPTTPKepePTTPKEPEPTTLKEP-EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 482
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQAAA---APAPAAAPAAAASAPaAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPP 452
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1907070835  483 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 522
Cdd:PRK14951   453 AQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PHA03247 PHA03247
large tegument protein UL36; Provisional
447-681 2.74e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 2.74e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  447 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP---------TTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 517
Cdd:PHA03247   255 PAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDgvwgaalagAPLALPAPPDPPPPAPAGDAEEEDDEDGAM 334
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  518 EPTTPKePEPTT------PKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTpKEPEPTTLKEPEPTTPKEPEP 591
Cdd:PHA03247   335 EVVSPL-PRPRQhyplgfPKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRKRRSARHA-ATPFARGPGGDDQTRPAAPVP 412
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  592 TTTKEPESTTRKEPEPTTPKEPEPT-TPKEPE-PTTPKEPEPTTPKEPepttPKEPEPTTPKEPEPTTPKEPEPTTPKKP 669
Cdd:PHA03247   413 ASVPTPAPTPVPASAPPPPATPLPSaEPGSDDgPAPPPERQPPAPATE----PAPDDPDDATRKALDALRERRPPEPPGA 488
                          250
                   ....*....|..
gi 1907070835  670 EPTTPKEPEPTT 681
Cdd:PHA03247   489 DLAELLGRHPDT 500
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
421-540 2.76e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 51.64  E-value: 2.76e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  421 PEPTTPKEPEPTTP-KEPEPTTlkePEPTTPKEPEPT-TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 498
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQA---AAAPAPAAAPAAaASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPP 452
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1907070835  499 KEPEPTTPKEPEPTTPkEPEPTTPKEPEPTTPKEPEPTTLKE 540
Cdd:PRK14951   453 AQAAPETVAIPVRVAP-EPAVASAAPAPAAAPAAARLTPTEE 493
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
388-730 2.86e-06

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 51.71  E-value: 2.86e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  388 EPEPTTTKEPESttrkePEPTTPKEPEPTTPKEPEPTTPKEPEPttPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPK 467
Cdd:PHA03307   114 PDPPPPTPPPAS-----PPPSPAPDLSEMLRPVGSPGPPPAASP--PAAGASPAAVASDAASSRQAALPLSSPEETARAP 186
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  468 EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPK 547
Cdd:PHA03307   187 SSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLP 266
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  548 EP--EPTTPKEPEPTTLKEPEPTTPKEPEPttlkEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKePEPTTPKEPEPTT 625
Cdd:PHA03307   267 TRiwEASGWNGPSSRPGPASSSSSPRERSP----SPSPSSPGSGPAPSSPRASSSSSSSRESSSSS-TSSSSESSRGAAV 341
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  626 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEP--TTPKEPEPTTPKEPEPTTPKEPEPTTPkepeP 703
Cdd:PHA03307   342 SPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRrrARAAVAGRARRRDATGRFPAGRPRPSP----L 417
                          330       340
                   ....*....|....*....|....*..
gi 1907070835  704 TTRKEPEPTTPKEPEPTTPKEPEPTTP 730
Cdd:PHA03307   418 DAGAASGAFYARYPLLTPSGEPWPGSP 444
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
477-596 3.06e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 51.25  E-value: 3.06e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  477 PEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPK 555
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPA 453
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1907070835  556 EPEPTTLKEPEPTTPkEPEPTTLKEPEPTTPKEPEPTTTKE 596
Cdd:PRK14951   454 QAAPETVAIPVRVAP-EPAVASAAPAPAAAPAAARLTPTEE 493
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
573-652 3.21e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 51.43  E-value: 3.21e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  573 PEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 652
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
605-722 3.60e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 51.25  E-value: 3.60e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  605 PEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPK 683
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPA 453
                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1907070835  684 EPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTP 722
Cdd:PRK14951   454 QAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
470-679 3.63e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 51.25  E-value: 3.63e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  470 EPTTPKEPEPTTPKEPepTTPKEPEPTtpkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEP 549
Cdd:PRK08691   373 ENTELQSPSAQTAEKE--TAAKKPQPR----PEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPDEAQTA 446
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  550 EPTTPKePEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEP-ESTTRKEPEPTTPKEPEPTTPKEPEPTTPKE 628
Cdd:PRK08691   447 AGTAQT-SAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPiQATPNDEAVETETFAHEAPAEPFYGYGFPDN 525
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  629 PEPttPKEPEPTTPKEPEPTTPKEPEPTTPKEpEPTTPKKPEPTTPKEPEP 679
Cdd:PRK08691   526 DCP--PEDGAEIPPPDWEHAAPADTAGGGADE-EAEAGGIGGNNTPSAPPP 573
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
510-586 4.06e-06

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 51.34  E-value: 4.06e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070835  510 EPTTPKEPEPTTPKEPEPTTPkepEPTtlkEPEPTTPKEPEPTTPKEPEPTTLkEPEPTTPKEPEPTTLKEPEPTTP 586
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVIP---DPV---DPDPVDPVIPDPVIPDPVDPDPV-DPEPVDPVIPDPTIPDIGQSDTP 628
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
582-671 4.23e-06

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 50.95  E-value: 4.23e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  582 EPTTPKEPEPTTTKEPEsttrkePEPTTPKEPEPTTPKEPEPTTPKEPEPtTPKEPEPTTPKEPEPTTPKEPEPTTPkep 661
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPD------PVIPDPVDPDPVDPVIPDPVIPDPVDP-DPVDPEPVDPVIPDPTIPDIGQSDTP--- 628
                           90
                   ....*....|
gi 1907070835  662 ePTTPKKPEP 671
Cdd:PRK15313   629 -PITEHQFRP 637
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
445-566 4.38e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 50.87  E-value: 4.38e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  445 PEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 523
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPA 453
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1907070835  524 EPEPTTPKEPEPTtlkEPEPTTPKEPEPTTPKEPEPTTLKEPE 566
Cdd:PRK14951   454 QAAPETVAIPVRV---APEPAVASAAPAPAAAPAAARLTPTEE 493
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
557-682 4.77e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 50.87  E-value: 4.77e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  557 PEPTTLKEPEPTTP-KEPEPTTlkePEPTTPKEPEPTTTKEPesttrkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 635
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQA---AAAPAPAAAPAAAASAP-------AAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV 445
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1907070835  636 EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTP 682
Cdd:PRK14951   446 ALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
459-539 5.03e-06

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 47.09  E-value: 5.03e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  459 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPttpkEPEPTTL 538
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP----EPGAATL 116

                   .
gi 1907070835  539 K 539
Cdd:pfam05887  117 K 117
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
595-663 5.17e-06

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 47.09  E-value: 5.17e-06
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070835  595 KEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 663
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 109
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
503-599 5.57e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 50.58  E-value: 5.57e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  503 PTTPKEPEPTTPKEPEPTTPKepepTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKE-P 581
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRPT----PAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAiP 437
                           90
                   ....*....|....*...
gi 1907070835  582 EPTTPKEPEPTTTKEPES 599
Cdd:PRK14950   438 VDEKPKYTPPAPPKEEEK 455
NESP55 pfam06390
Neuroendocrine-specific golgi protein P55 (NESP55); This family consists of several mammalian ...
405-579 5.68e-06

Neuroendocrine-specific golgi protein P55 (NESP55); This family consists of several mammalian neuroendocrine-specific golgi protein P55 (NESP55) sequences. NESP55 is a novel member of the chromogranin family and is a soluble, acidic, heat-stable secretory protein that is expressed exclusively in endocrine and nervous tissues, although less widely than chromogranins.


Pssm-ID: 115071 [Multi-domain]  Cd Length: 261  Bit Score: 49.09  E-value: 5.68e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  405 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK-EPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 483
Cdd:pfam06390   81 PEPSEPESDHEDEDFEPELARPECLEYDEDDfDTETDSETEPESDIESETEFETEPETEPDTAPTTEPETEPEDEPGPVV 160
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  484 EPEPT---TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPT 560
Cdd:pfam06390  161 PKGATfhqSLTERLHALKLQSADASPRRAPPSTQEPESAREGEEPERGPLDKDPRDPEEEEEEKEEEKQQPHRCKPKKPA 240
                          170
                   ....*....|....*....
gi 1907070835  561 TLKEPEPTTPKEPEPTTLK 579
Cdd:pfam06390  241 RRRDPSPESPPKKGAIPIR 259
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
566-663 5.84e-06

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 50.57  E-value: 5.84e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  566 EPTTPKEPEPTTLKEPEPTTPkepEPTttkepesttrkEPEPTTPKEPEPTTPKEPEPtTPKEPEPTTPKEPEPTTPKEP 645
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVIP---DPV-----------DPDPVDPVIPDPVIPDPVDP-DPVDPEPVDPVIPDPTIPDIG 623
                           90
                   ....*....|....*...
gi 1907070835  646 EPTTPkepePTTPKEPEP 663
Cdd:PRK15313   624 QSDTP----PITEHQFRP 637
TonB COG0810
Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope ...
606-732 6.20e-06

Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 223880 [Multi-domain]  Cd Length: 244  Bit Score: 49.01  E-value: 6.20e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  606 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPkepepttPKKPEPTTPKEPEPTTPKEP 685
Cdd:COG0810     35 ELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEK-------PKPEKKPKKPKPKPKPKPKP 107
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1907070835  686 EPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPKK 732
Cdd:COG0810    108 KPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSAS 154
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
410-630 6.58e-06

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 50.35  E-value: 6.58e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  410 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE-PT 488
Cdd:PTZ00441   283 PVEPEPLPVPAPVPPTPEDDNPRPTDDEFAVPNFNEGLDVPDNPQDPVPPPNEGKDGNPNEENLFPPGDDEVPDESNvPP 362
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  489 TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEpTTPKEPEPTTPKEPEPTTLkepEPTTPKEPEPTTPKEPEPTTLKEPEPT 568
Cdd:PTZ00441   363 NPPNVPGGSNSEFSSDVENPPNPPNPDIPE-QEPNIPEDSNKEVPEDVPM---EPEDDRDNNFNEPKKPENKGDGQNEPV 438
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907070835  569 TPK--EPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEpEPTTPKEPEPTTPKEPE 630
Cdd:PTZ00441   439 IPKplDNERDQSNKNKQVNPGNRHNSEDRYTRPHGRNNENRNYNNK-NSDIPKHPERSEHEQPE 501
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
483-563 6.58e-06

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 46.71  E-value: 6.58e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  483 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPttpkEPEPTTL 562
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP----EPGAATL 116

                   .
gi 1907070835  563 K 563
Cdd:pfam05887  117 K 117
PRK10819 PRK10819
transport protein TonB; Provisional
404-511 6.85e-06

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 48.91  E-value: 6.85e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  404 EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKePEPTTLKEPEPTTPKEPEPTTPKEPEPTtpKEPEPTTPKEPEPTTPK 483
Cdd:PRK10819    59 EPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPV-VIPKPEPKPKPKPKPKPKPVKKVEEQPK--REVKPVEPRPASPFENT 135
                           90       100
                   ....*....|....*....|....*...
gi 1907070835  484 EPEPTTPKEPEPTTPKePEPTTPKEPEP 511
Cdd:PRK10819   136 APARPTSSTATAAASK-PVTSVSSGPRA 162
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
585-678 7.70e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 50.19  E-value: 7.70e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  585 TPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKE-PE 662
Cdd:PRK14950   361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVrETATPPPVPPRPVAP--PVPHTPESAPKLTRAAiPV 438
                           90
                   ....*....|....*.
gi 1907070835  663 PTTPKKPEPTTPKEPE 678
Cdd:PRK14950   439 DEKPKYTPPAPPKEEE 454
PHA03247 PHA03247
large tegument protein UL36; Provisional
402-561 8.69e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.32  E-value: 8.69e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  402 RKEPEPTTPKEPEPTTPKEPEPttPKEPEPTTPKEPEPTTlKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 481
Cdd:PHA03247   354 RRRPTWTPPSSLEDLSAGRHHP--KRASLPTRKRRSARHA-ATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPP 430
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  482 PKEPEPTtpkePEPTTPKEPEPTtpkePEPTTPKEPEPTTPKEPEPTTPKEPEptTLKEPEPTTPKEPEPTTPKEPEPTT 561
Cdd:PHA03247   431 PATPLPS----AEPGSDDGPAPP----PERQPPAPATEPAPDDPDDATRKALD--ALRERRPPEPPGADLAELLGRHPDT 500
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
443-511 8.87e-06

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 46.32  E-value: 8.87e-06
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070835  443 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 511
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 109
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
587-655 8.95e-06

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 46.32  E-value: 8.95e-06
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070835  587 KEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 655
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 109
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
613-777 9.00e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 49.86  E-value: 9.00e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  613 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK---KPEPTTPKEPEPTTPKEPEPTT 689
Cdd:PRK07994   366 PEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSqllAARQQLQRAQGATKAKKSEPAA 445
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  690 PKEPEPtTPKEPEPTTRKEPEP-TTPKEPEPTTPKEPEPTTPkkpeptttspkTTTLKATTLAPKVTAPAEEIQNKPEET 768
Cdd:PRK07994   446 ASRARP-VNSALERLASVRPAPsALEKAPAKKEAYRWKATNP-----------VEVKKEPVATPKALKKALEHEKTPELA 513

                   ....*....
gi 1907070835  769 TPASEDSDD 777
Cdd:PRK07994   514 AKLAAEAIE 522
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
552-662 9.14e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 49.81  E-value: 9.14e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  552 TTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPT-TPKEPEPTTTKEPESTTRKEPEPTTPK-EPEPTTPKEPEPTTPkeP 629
Cdd:PRK14950   343 TTSYGQLPLELAVIEALLVPVPAPQPAKPTAAApSPVRPTPAPSTRPKAAAAANIPPKEPVrETATPPPVPPRPVAP--P 420
                           90       100       110
                   ....*....|....*....|....*....|....
gi 1907070835  630 EPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKEPE 662
Cdd:PRK14950   421 VPHTPESAPKLTRAAiPVDEKPKYTPPAPPKEEE 454
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
591-686 9.46e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 49.81  E-value: 9.46e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  591 PTTTKEPESTTRKEPEPTTPKepepTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKK-P 669
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRPT----PAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAiP 437
                           90
                   ....*....|....*..
gi 1907070835  670 EPTTPKEPEPTTPKEPE 686
Cdd:PRK14950   438 VDEKPKYTPPAPPKEEE 454
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
499-579 9.86e-06

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 46.32  E-value: 9.86e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  499 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPttpkEPEPTTL 578
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP----EPGAATL 116

                   .
gi 1907070835  579 K 579
Cdd:pfam05887  117 K 117
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
437-556 1.03e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 49.71  E-value: 1.03e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  437 PEPTTLKEPEPTTP-KEPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 515
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPA 453
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1907070835  516 EPEPTTPKEPEPTTPkEPEPTTLKEPEPTTPKEPEPTTPKE 556
Cdd:PRK14951   454 QAAPETVAIPVRVAP-EPAVASAAPAPAAAPAAARLTPTEE 493
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
427-495 1.06e-05

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 46.32  E-value: 1.06e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070835  427 KEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 495
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 109
PRK10263 PRK10263
DNA translocase FtsK; Provisional
405-718 1.16e-05

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 49.70  E-value: 1.16e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  405 PEPTTPKEPEPTTPKEPEPTTPKE---PEPTTPKEPEPTTLKE---PEPTTPKEPE-PTTPKEPEPTTPKEP--EPTTPK 475
Cdd:PRK10263   423 PAPEQPAQQPYYAPAPEQPVAGNAwqaEEQQSTFAPQSTYQTEqtyQQPAAQEPLYqQPQPVEQQPVVEPEPvvEETKPA 502
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  476 EPEPTTPKEPEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPKEPEPTTPKEP--EPTTPKEPEPTTLKEPEPTT------- 545
Cdd:PRK10263   503 RPPLYYFEEVEEKRAREREQLAAwYQPIPEPVKEPEPIKSSLKAPSVAAVPpvEAAAAVSPLASGVKKATLATgaaatva 582
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  546 -------------PKEPEPTTPKEPEPTTLKEPeptTPKEPEPTTLKEP------------------------------- 581
Cdd:PRK10263   583 apvfslansggprPQVKEGIGPQLPRPKRIRVP---TRRELASYGIKLPsqraaeekareaqrnqydsgdqynddeidam 659
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  582 ---------------------EPTTPKEPEPTTTKEPESTTRK------------EPEPTTP-----------KEPEPTT 617
Cdd:PRK10263   660 qqdelarqfaqtqqqrygeqyQHDVPVNAEDADAAAEAELARQfaqtqqqrysgeQPAGANPfslddfefspmKALLDDG 739
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  618 PKEP--EPTTPKEPEPTTPKEPEPTTPKEPEPTTP----KEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEpttPK 691
Cdd:PRK10263   740 PHEPlfTPIVEPVQQPQQPVAPQQQYQQPQQPVAPqpqyQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQ---PQ 816
                          410       420
                   ....*....|....*....|....*..
gi 1907070835  692 EPEPTTPKEPEPTTRKEPEPTTPKEPE 718
Cdd:PRK10263   817 YQQPQQPVAPQPQYQQPQQPVAPQPQD 843
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
403-471 1.18e-05

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 45.94  E-value: 1.18e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070835  403 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 471
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 109
PRK10263 PRK10263
DNA translocase FtsK; Provisional
434-602 1.21e-05

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 49.70  E-value: 1.21e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  434 PKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEpTTPKEPEPTTPKEPEPTTPKEPePTTPKEPEPTTPKEPEPTT 513
Cdd:PRK10263   716 PAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPV-QQPQQPVAPQQQYQQPQQPVAP-QPQYQQPQQPVAPQPQYQQ 793
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  514 PKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEP--EPTTPKEPEPT-TLKEP------------EPTTPKePEPTTL 578
Cdd:PRK10263   794 PQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQyqQPQQPVAPQPQdTLLHPllmrngdsrplhKPTTPL-PSLDLL 872
                          170       180
                   ....*....|....*....|....
gi 1907070835  579 KEPepttPKEPEPTTTKEPESTTR 602
Cdd:PRK10263   873 TPP----PSEVEPVDTFALEQMAR 892
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
419-487 1.30e-05

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 45.94  E-value: 1.30e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070835  419 KEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 487
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 109
PHA03378 PHA03378
EBNA-3B; Provisional
305-771 1.35e-05

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 49.68  E-value: 1.35e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  305 ETRSAEKTSDKDVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTPKEPEPTTPKEPPPTTKKPEPTTPKEPEPTTPKEPEPT 384
Cdd:PHA03378   361 ESEEIESECDPDEDKSGAEALASIPQTLPDPPTVYGRPKVFARKADLKSTKKCRAIVTDPSVIKAIEEEHRKKKAARTEQ 440
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  385 TTKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPT------------------------ 440
Cdd:PHA03378   441 PRATPHSQAPTVVLHRPPTQPLEGPTGPLSVQAPLEPWQPLPHPQVTPVILHQPPAqgvqahgsmldllekddedmeqrv 520
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  441 --TLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPtTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 518
Cdd:PHA03378   521 maTLLPPSPPQPRAGRRAPCVYTEDLDIESDEPASTEPVHDQLLPAPGL-GPLQIQPLTSPTTSQLASSAPSYAQTPWPV 599
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  519 PTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEP---EPTTLKEPEPTTPKEPEPTTTK 595
Cdd:PHA03378   600 PHPSQTPEPPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFPTPHQPpqvEITPYKPTWTQIGHIPYQPSPT 679
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  596 EPESTTRKEPEPTTPKEPepttPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPK 675
Cdd:PHA03378   680 GANTMLPIQWAPGTMQPP----PRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRAR 755
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  676 EPEPT-TPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKV 754
Cdd:PHA03378   756 PPAAApGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPTKQILRQLLTGGVKR 835
                          490
                   ....*....|....*..
gi 1907070835  755 TAPAEEIQNKPEETTPA 771
Cdd:PHA03378   836 GRPSLKKPAALERQAAA 852
PRK10819 PRK10819
transport protein TonB; Provisional
469-598 1.38e-05

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 47.75  E-value: 1.38e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  469 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKEPEPttLKEPEPTTPK 547
Cdd:PRK10819    42 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPvVIPKPEPKPKPKPKPKPKP--VKKVEEQPKR 119
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  548 EPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKePEPTTPKEPEPTTTKEPE 598
Cdd:PRK10819   120 EVKPVEPRPASPFENTAPARPTSSTATAAASK-PVTSVSSGPRALSRNQPQ 169
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
541-638 1.45e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 49.04  E-value: 1.45e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  541 PEPTTPKEPEPTtPKEPEPTTLKEPEPTTPKEPEPttlKEPEPTTPkePEPTTTKEPESTtrkePEPTTPKEPEPTTPKE 620
Cdd:PRK14950   366 PQPAKPTAAAPS-PVRPTPAPSTRPKAAAAANIPP---KEPVRETA--TPPPVPPRPVAP----PVPHTPESAPKLTRAA 435
                           90
                   ....*....|....*....
gi 1907070835  621 -PEPTTPKEPEPTTPKEPE 638
Cdd:PRK14950   436 iPVDEKPKYTPPAPPKEEE 454
TonB COG0810
Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope ...
425-572 1.47e-05

Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 223880 [Multi-domain]  Cd Length: 244  Bit Score: 47.86  E-value: 1.47e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  425 TPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK-EPEP 503
Cdd:COG0810     24 VFLHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKpKPKP 103
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070835  504 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKE 572
Cdd:COG0810    104 KPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLSGLRRAIRRAPRYPAQ 172
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
651-719 1.48e-05

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 45.94  E-value: 1.48e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070835  651 KEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEP 719
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 109
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
518-604 1.60e-05

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 49.41  E-value: 1.60e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  518 EPTTPKEPEPTTPKEPEPTTlkePEPTtpkEPEPTTPKEPEPtTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEP 597
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVI---PDPV---DPDPVDPVIPDP-VIPDPVDPDPVDPEPVDPVIPDPTIPDIGQSDTPPIT 631

                   ....*..
gi 1907070835  598 ESTTRKE 604
Cdd:PRK15313   632 EHQFRPE 638
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
643-711 1.81e-05

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 45.55  E-value: 1.81e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070835  643 KEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEP 711
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 109
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
647-731 1.81e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 48.65  E-value: 1.81e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  647 PTTPKEPEPTTPKEPEPTTPKKP--EPTTPKEPEPTTPKEPEPTT-PKEPEPTTPKEPEPTTRKEPEPTTPKE--PEPTT 721
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRPTPApsTRPKAAAAANIPPKEPVRETaTPPPVPPRPVAPPVPHTPESAPKLTRAaiPVDEK 441
                           90
                   ....*....|
gi 1907070835  722 PKEPEPTTPK 731
Cdd:PRK14950   442 PKYTPPAPPK 451
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
542-639 1.82e-05

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 49.03  E-value: 1.82e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  542 EPTTPKEPEPTTPKEPEPTTlkePEPTTPKEPEPTTlkePEPTTPK--EPEPTttkepesttrkEPEPTTPKEPEPTTPK 619
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVI---PDPVDPDPVDPVI---PDPVIPDpvDPDPV-----------DPEPVDPVIPDPTIPD 621
                           90       100
                   ....*....|....*....|
gi 1907070835  620 EPEPTTPkepePTTPKEPEP 639
Cdd:PRK15313   622 IGQSDTP----PITEHQFRP 637
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
627-695 1.86e-05

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 45.55  E-value: 1.86e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070835  627 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEP 695
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 109
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
402-522 1.87e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 48.72  E-value: 1.87e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  402 RKEPEPTTPKEPEPTTP---KEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEP--TTPKEPEPTTPKE 476
Cdd:PRK12323   447 APAPAPAPAAAPAAAARpaaAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPaqPDAAPAGWVAESI 526
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1907070835  477 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE--PTTPKEPEPTTP 522
Cdd:PRK12323   527 PDPATADPDDAFETLAPAPAAAPAPRAAAATEPVvaPRPPRASASGLP 574
PRK10819 PRK10819
transport protein TonB; Provisional
516-655 1.88e-05

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 47.37  E-value: 1.88e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  516 EPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPkEPEPTTPKEPEPttlkEPEPTTPKePEPTTLKEPEpttpKEPEPTTTK 595
Cdd:PRK10819    36 HQVIELPAPAQPISVTMVAPADLEPPQAVQP-PPEPVVEPEPEP----EPIPEPPK-EAPVVIPKPE----PKPKPKPKP 105
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  596 EPESTTRKEPEPTtpKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKePEPTTPKEPEP 655
Cdd:PRK10819   106 KPKPVKKVEEQPK--REVKPVEPRPASPFENTAPARPTSSTATAAASK-PVTSVSSGPRA 162
DUF4045 pfam13254
Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. ...
631-770 1.97e-05

Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length.


Pssm-ID: 433066 [Multi-domain]  Cd Length: 415  Bit Score: 48.24  E-value: 1.97e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  631 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPePTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPE 710
Cdd:pfam13254  197 PNSFKEVTPVGLMRSPAPGGHSKSPSVSGISADSSPTKEEPSEEADT-LSTDKEQSPAPTSASEPPPKTKELPKDSEEPA 275
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907070835  711 PTTPKEPEPTTPKEP--EPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQNKPEETTP 770
Cdd:pfam13254  276 APSKSAEASTEKKEPdtESSPETSSEKSAPSLLSPVSKASIDKPLSSPDRDPLSPKPKPQSP 337
dnaA PRK14086
chromosomal replication initiator protein DnaA;
404-600 2.29e-05

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 48.67  E-value: 2.29e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  404 EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTT-PKEPEPTTPKEPEPTtPKEPEPTTP 482
Cdd:PRK14086    89 DPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTArPAYPAYQQRPEPGAW-PRAADDYGW 167
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  483 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP-KEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTT 561
Cdd:PRK14086   168 QQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRrRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPE 247
                          170       180       190
                   ....*....|....*....|....*....|....*....
gi 1907070835  562 LKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPEST 600
Cdd:PRK14086   248 RDDAPVVPIRPSAPGPLAAQPAPAPGPGEPTARLNPKYT 286
PRK11633 PRK11633
cell division protein DedD; Provisional
402-498 2.33e-05

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 46.92  E-value: 2.33e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  402 RKEPEPTTP-KEPEPTTPKEPEPTTPKEPEPTTPkEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPt 480
Cdd:PRK11633    50 RDEPDMMPAaTQALPTQPPEGAAEAVRAGDAAAP-SLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEA- 127
                           90
                   ....*....|....*...
gi 1907070835  481 tPKEPEPTTPKEPEPTTP 498
Cdd:PRK11633   128 -PPAPKPEPKPVVEEKAA 144
TonB COG0810
Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope ...
486-628 2.37e-05

Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 223880 [Multi-domain]  Cd Length: 244  Bit Score: 47.09  E-value: 2.37e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  486 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTtlkePEPTTPKEPEPTTPKePEPTTLKEP 565
Cdd:COG0810     35 ELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPK----EKPKPEKKPKKPKPK-PKPKPKPKP 109
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907070835  566 EPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKE 628
Cdd:COG0810    110 KVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLSGLRRAIRRAPRYPAQ 172
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
517-614 2.38e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 48.27  E-value: 2.38e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  517 PEPTTPKEPEPTtPKEPEPTTLKEPEPTTPKEPEPTTPKepepttlkePEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKE 596
Cdd:PRK14950   366 PQPAKPTAAAPS-PVRPTPAPSTRPKAAAAANIPPKEPV---------RETATPPPVPPRPVAPPVPHTPESAPKLTRAA 435
                           90
                   ....*....|....*....
gi 1907070835  597 -PESTTRKEPEPTTPKEPE 614
Cdd:PRK14950   436 iPVDEKPKYTPPAPPKEEE 454
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
611-679 2.48e-05

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 45.17  E-value: 2.48e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070835  611 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEP 679
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 109
PHA03264 PHA03264
envelope glycoprotein D; Provisional
624-729 2.75e-05

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 48.08  E-value: 2.75e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  624 TTPKEPEPTTPKEPEPTtPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 703
Cdd:PHA03264   253 VVPPYFEESKGYEPPPA-PSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPGPPRPAPD 331
                           90       100
                   ....*....|....*....|....*..
gi 1907070835  704 TTRKEPEPTTPKEP-EPTTPKEPEPTT 729
Cdd:PHA03264   332 ADRPEGWPSLEAITfPPPTPATPAVPR 358
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
597-710 2.79e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 48.17  E-value: 2.79e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  597 PESTTRKEPEPTTP---KEPEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPT 672
Cdd:PRK14951   376 AEKKTPARPEAAAPaaaPVAQAAAAPAPAAAPAAAaSAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQA 455
                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1907070835  673 TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPE 710
Cdd:PRK14951   456 APETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
TonB COG0810
Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope ...
542-684 2.94e-05

Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 223880 [Multi-domain]  Cd Length: 244  Bit Score: 46.70  E-value: 2.94e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  542 EPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPEsttrKEPEPTTPKePEPTTPKEP 621
Cdd:COG0810     35 ELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPE----KKPKKPKPK-PKPKPKPKP 109
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907070835  622 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKE 684
Cdd:COG0810    110 KVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLSGLRRAIRRAPRYPAQ 172
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
583-690 3.02e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 48.17  E-value: 3.02e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  583 PTTPKEPEPTTTKEPESTTRKEPEPTTPKE----PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 658
Cdd:PRK14951   381 PARPEAAAPAAAPVAQAAAAPAPAAAPAAAasapAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETV 460
                           90       100       110
                   ....*....|....*....|....*....|..
gi 1907070835  659 KEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTP 690
Cdd:PRK14951   461 AIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
581-702 3.07e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 48.17  E-value: 3.07e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  581 PEPTTPKEPEPtttkePESTTRKEPEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 659
Cdd:PRK14951   376 AEKKTPARPEA-----AAPAAAPVAQAAAAPAPAAAPAAAaSAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPA 450
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1907070835  660 EPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 702
Cdd:PRK14951   451 PPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
PRK10263 PRK10263
DNA translocase FtsK; Provisional
302-727 3.11e-05

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 48.54  E-value: 3.11e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  302 SAKETRSAEKTSDKDVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTPKEPEPttPKEPPPTTKKPEPTTPKEPEPTTPKEP 381
Cdd:PRK10263   322 VAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPV--IAPAPEGYPQQSQYAQPAVQYNEPLQQ 399
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  382 EPTTTKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKE---PEPTTPKEPEPTTLKE---PEPTTPKEPE- 454
Cdd:PRK10263   400 PVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAwqaEEQQSTFAPQSTYQTEqtyQQPAAQEPLYq 479
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  455 PTTPKEPEPTTPKEP--EPTTPKEPEPTTPKEPEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPKEPEPTTPKEP--EPTT 529
Cdd:PRK10263   480 QPQPVEQQPVVEPEPvvEETKPARPPLYYFEEVEEKRAREREQLAAwYQPIPEPVKEPEPIKSSLKAPSVAAVPpvEAAA 559
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  530 PKEPEPTTLKEPEPTT--------------------PKEPEPTTPKEPEPTTLKEPeptTPKEPEPTTLKEPEPTTPKE- 588
Cdd:PRK10263   560 AVSPLASGVKKATLATgaaatvaapvfslansggprPQVKEGIGPQLPRPKRIRVP---TRRELASYGIKLPSQRAAEEk 636
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  589 ----------------------------------------------------------PEPTTTKEPESTTRKEPEPTTP 610
Cdd:PRK10263   637 areaqrnqydsgdqynddeidamqqdelarqfaqtqqqrygeqyqhdvpvnaedadaaAEAELARQFAQTQQQRYSGEQP 716
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  611 KEPEPTTPKEPEPTTPKEPEPTTPKEP--EPTTPKEPEPTTPKEPEPTTPKEPEPTTP----KKPEPTTPKEPEPTTPKE 684
Cdd:PRK10263   717 AGANPFSLDDFEFSPMKALLDDGPHEPlfTPIVEPVQQPQQPVAPQQQYQQPQQPVAPqpqyQQPQQPVAPQPQYQQPQQ 796
                          490       500       510       520
                   ....*....|....*....|....*....|....*....|....*
gi 1907070835  685 PEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEP--EPTTPKEPEP 727
Cdd:PRK10263   797 PVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQyqQPQQPVAPQP 841
TonB COG0810
Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope ...
401-548 3.14e-05

Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 223880 [Multi-domain]  Cd Length: 244  Bit Score: 46.70  E-value: 3.14e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  401 TRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK-EPEP 479
Cdd:COG0810     24 VFLHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKpKPKP 103
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070835  480 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKE 548
Cdd:COG0810    104 KPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLSGLRRAIRRAPRYPAQ 172
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
618-784 3.24e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 48.04  E-value: 3.24e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  618 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPkePEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 697
Cdd:PRK14948   363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATT--PSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLN 440
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  698 PKE---------PEPTTR-------------------------------KEPE------------------------PTT 713
Cdd:PRK14948   441 LEElwqqilaklELPSTRmllsqqaelvsldsnraviavspnwlgmvqsRKPLleqafakvlgrsiklnlesqsgsaSNT 520
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  714 PKEPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQNKPEETTPASEDSDDSKTTLKP 784
Cdd:PRK14948   521 AKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKD 591
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
523-603 3.25e-05

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 44.78  E-value: 3.25e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  523 KEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPttlkEPEPTTPKEPEPTTTKEPESTTR 602
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP----EPEPEPEPEPEPEPEPEPGAATL 116

                   .
gi 1907070835  603 K 603
Cdd:pfam05887  117 K 117
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
579-647 3.47e-05

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 44.78  E-value: 3.47e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070835  579 KEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 647
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 109
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
571-639 4.05e-05

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 44.40  E-value: 4.05e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070835  571 KEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 639
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 109
PRK11633 PRK11633
cell division protein DedD; Provisional
602-698 4.20e-05

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 46.15  E-value: 4.20e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  602 RKEPEPTTP-KEPEPTTPKEPEPTTPKEPEPTTPkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPt 680
Cdd:PRK11633    50 RDEPDMMPAaTQALPTQPPEGAAEAVRAGDAAAP-SLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEA- 127
                           90
                   ....*....|....*...
gi 1907070835  681 tPKEPEPTTPKEPEPTTP 698
Cdd:PRK11633   128 -PPAPKPEPKPVVEEKAA 144
dnaA PRK14086
chromosomal replication initiator protein DnaA;
445-640 4.31e-05

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 47.51  E-value: 4.31e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  445 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT-PKEPEPTTPKEPEPTtPKEPEPTTPKEPEPTTPK 523
Cdd:PRK14086    98 PPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTArPAYPAYQQRPEPGAW-PRAADDYGWQQQRLGFPP 176
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  524 EPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTlkEPEPTTPKEpEPTTLKEPEPTTPKEPEptTTKEPESTTRK 603
Cdd:PRK14086   177 RAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHP--RPDWDRPRR-DRTDRPEPPPGAGHVHR--GGPGPPERDDA 251
                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 1907070835  604 EPEPTTPKEPEPTtPKEPEPTtPKEPEPTTPKEPEPT 640
Cdd:PRK14086   252 PVVPIRPSAPGPL-AAQPAPA-PGPGEPTARLNPKYT 286
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
410-558 4.37e-05

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 47.28  E-value: 4.37e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  410 PKEPEPTT-PKEPEPTTPKEPEPTTPKEP-EPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKePEPTTPKEPEP 487
Cdd:PRK13108   295 ALEREPAElAAAAVASAASAVGPVGPGEPnQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPA-VEETSEADIER 373
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907070835  488 TTPKEPEPTTPKEPEPTTPKEPE-PTTPKEPEPTTPKEPEPTTPKEPEPTT-LKEPEPTTPKEPEPtTPKEPE 558
Cdd:PRK13108   374 EQPGDLAGQAPAAHQVDAEAASAaPEEPAALASEAHDETEPEVPEKAAPIPdPAKPDELAVAGPGD-DPAEPD 445
TonB COG0810
Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope ...
590-730 4.39e-05

Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 223880 [Multi-domain]  Cd Length: 244  Bit Score: 46.32  E-value: 4.39e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  590 EPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPttpkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKP 669
Cdd:COG0810     35 ELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETP-----PEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKP 109
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  670 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTP 730
Cdd:COG0810    110 KVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLSGLRRAIRRAPRYP 170
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
400-455 4.42e-05

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 44.40  E-value: 4.42e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070835  400 TTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEP 455
Cdd:pfam05887   54 TNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 109
PRK10819 PRK10819
transport protein TonB; Provisional
621-731 4.54e-05

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 46.21  E-value: 4.54e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  621 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTtPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 700
Cdd:PRK10819    42 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPP-KEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKRE 120
                           90       100       110
                   ....*....|....*....|....*....|.
gi 1907070835  701 PEPTTRKEPEPTTPKEPEPTTPKEPEPTTPK 731
Cdd:PRK10819   121 VKPVEPRPASPFENTAPARPTSSTATAAASK 151
PHA03379 PHA03379
EBNA-3A; Provisional
410-653 4.61e-05

EBNA-3A; Provisional


Pssm-ID: 223066 [Multi-domain]  Cd Length: 935  Bit Score: 47.75  E-value: 4.61e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  410 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTtpkEPEPTTPKEPEPTTPKEP---E 486
Cdd:PHA03379   408 ASEPTYGTPRPPVEKPRPEVPQSLETATSHGSAQVPEPPPVHDLEPGPLHDQHSM---APCPVAQLPPGPLQDLEPgdqL 484
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  487 PTTPKEPEPTTPKEPEPT----TPKEPEPT-TPKEPEPTTPKEPEPTTPkEPEPTTLKEpEPTTPKEPEPTTPKEPEPTT 561
Cdd:PHA03379   485 PGVVQDGRPACAPVPAPAgpivRPWEASLSqVPGVAFAPVMPQPMPVEP-VPVPTVALE-RPVCPAPPLIAMQGPGETSG 562
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  562 LKEPEPTTpkEPEPTTlkepePTTPKEPEPTTTKEPESTTRKEPEP-TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPT 640
Cdd:PHA03379   563 IVRVRERW--RPAPWT-----PNPPRSPSQMSVRDRLARLRAEAQPyQASVEVQPPQLTQVSPQQPMEYPLEPEQQMFPG 635
                          250
                   ....*....|...
gi 1907070835  641 TPKEPEPTTPKEP 653
Cdd:PHA03379   636 SPFSQVADVMRAG 648
PRK11633 PRK11633
cell division protein DedD; Provisional
605-705 4.82e-05

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 46.15  E-value: 4.82e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  605 PEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPKEPEPTTPkEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPK 683
Cdd:PRK11633    45 PKPGDRDEPDMMPAaTQALPTQPPEGAAEAVRAGDAAAP-SLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQ 123
                           90       100
                   ....*....|....*....|..
gi 1907070835  684 EPEPttPKEPEPTTPKEPEPTT 705
Cdd:PRK11633   124 KVEA--PPAPKPEPKPVVEEKA 143
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
597-772 5.36e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 47.26  E-value: 5.36e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  597 PESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKE 676
Cdd:PRK14948   366 SEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATT--PSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLNLEE 443
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  677 ---------PEPTT------------------------------------------------------PKEPEPTTPKEP 693
Cdd:PRK14948   444 lwqqilaklELPSTrmllsqqaelvsldsnraviavspnwlgmvqsrkplleqafakvlgrsiklnleSQSGSASNTAKT 523
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070835  694 EPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPKKpeptttspktttlkATTLAPKVTAPAEEIQNKPEETTPAS 772
Cdd:PRK14948   524 PPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQA--------------SSNAPAQIPADSSPPPPIPEEPTPSP 588
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
587-731 5.52e-05

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 411407 [Multi-domain]  Cd Length: 684  Bit Score: 47.31  E-value: 5.52e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  587 KEPEPTTTKEPESTTRKEPEPTTPKEPEPTtpKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEpEPTTPKEPEPTTp 666
Cdd:NF033838   351 KEAELELVKEEAKEPRNEEKIKQAKAKVES--KKAEATRLEKIKTDRKKAEEEAKRKAAEEDKVKE-KPAEQPQPAPAP- 426
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070835  667 kKPEPTTPKEPEPT-TPKEPEPTTPKEPEPTTPKEPEpttrkEPEPTTPKEPePTTPKEPEPTTPK 731
Cdd:NF033838   427 -QPEKPAPKPEKPAeQPKAEKPADQQAEEDYARRSEE-----EYNRLTQQQP-PKTEKPAQPSTPK 485
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
563-631 5.83e-05

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 44.01  E-value: 5.83e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070835  563 KEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 631
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 109
PRK11633 PRK11633
cell division protein DedD; Provisional
551-650 6.06e-05

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 45.76  E-value: 6.06e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  551 PTTPK---EPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEP--EPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTT 625
Cdd:PRK11633    42 PLVPKpgdRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPslDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKP 121
                           90       100
                   ....*....|....*....|....*
gi 1907070835  626 PKEPEPttPKEPEPTTPKEPEPTTP 650
Cdd:PRK11633   122 QQKVEA--PPAPKPEPKPVVEEKAA 144
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
399-476 6.64e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 47.19  E-value: 6.64e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907070835  399 STTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 476
Cdd:PRK12270    40 STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
405-486 6.76e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 47.11  E-value: 6.76e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  405 PEPTTPKEPEPT----TPKEPEPTTPKEPEPTTPKEPEPTTlKEPEPTTPK---EPEPTTPKEPEPTTPKE-PEPTTPKE 476
Cdd:PRK14950   366 PQPAKPTAAAPSpvrpTPAPSTRPKAAAAANIPPKEPVRET-ATPPPVPPRpvaPPVPHTPESAPKLTRAAiPVDEKPKY 444
                           90
                   ....*....|
gi 1907070835  477 PEPTTPKEPE 486
Cdd:PRK14950   445 TPPAPPKEEE 454
TonB COG0810
Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope ...
441-588 6.78e-05

Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 223880 [Multi-domain]  Cd Length: 244  Bit Score: 45.93  E-value: 6.78e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  441 TLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK-EPEP 519
Cdd:COG0810     24 VFLHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKpKPKP 103
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070835  520 TTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKE 588
Cdd:COG0810    104 KPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLSGLRRAIRRAPRYPAQ 172
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
475-543 7.35e-05

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 44.01  E-value: 7.35e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070835  475 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEP 543
Cdd:pfam05887   43 KGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 111
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
565-644 7.35e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 47.19  E-value: 7.35e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  565 PEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 644
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PHA03369 PHA03369
capsid maturational protease; Provisional
613-716 7.40e-05

capsid maturational protease; Provisional


Pssm-ID: 223061 [Multi-domain]  Cd Length: 663  Bit Score: 46.92  E-value: 7.40e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  613 PEPTTPKEP--EPTTPKEPEP-TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEP-EPTTPKEPEPT 688
Cdd:PHA03369   354 TAPSRVLAAaaKVAVIAAPQThTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDPGLVSPYNPqSPGTSYGPEPV 433
                           90       100
                   ....*....|....*....|....*...
gi 1907070835  689 TPKEPEPTTPKEPEPTTRKEPEPTTPKE 716
Cdd:PHA03369   434 GPVPPQPTNPYVMPISMANMVYPGHPQE 461
PHA03247 PHA03247
large tegument protein UL36; Provisional
527-754 7.57e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.24  E-value: 7.57e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  527 PTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTT-PKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEP 605
Cdd:PHA03247   255 PAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVwGAALAGAPLALPAPPDPPPPAPAGDAEEEDDEDGAM 334
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  606 EPTTPKepepTTPKEPEPTT-PKEPEPTTpkepepTTPKEPEPTTPKEPEPttPKEPEPTTPKKPEPTTpKEPEPTTPKE 684
Cdd:PHA03247   335 EVVSPL----PRPRQHYPLGfPKRRRPTW------TPPSSLEDLSAGRHHP--KRASLPTRKRRSARHA-ATPFARGPGG 401
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907070835  685 PEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPT-TPKEPE-PTTPKKPEPTTTSPKTTTLKATTLAPKV 754
Cdd:PHA03247   402 DDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSaEPGSDDgPAPPPERQPPAPATEPAPDDPDDATRKA 473
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
399-625 7.57e-05

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 436069 [Multi-domain]  Cd Length: 480  Bit Score: 46.83  E-value: 7.57e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  399 STTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 478
Cdd:pfam17823  174 SSAPATLTPASGISTAATATGHPAAGTALAAVGNSSPAAGTVTAAVGTVTPAALATLAAAAGTVASAAGTINTGDPHARR 253
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  479 PTTPKE-PEPTTPKEPEPTTPKEPEPTTPK----EPEPTTPKEPEPT-TPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPT 552
Cdd:pfam17823  254 LSPAKHmPSDTSARNPAAPSGAQAQGLIIQvstdQPVHNTAGEPTPSpSNTTLEPNTPKSVASTNLAVVTTTKAQAKEPS 333
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907070835  553 TPKEPEPTTLKEPE-----PTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTT 625
Cdd:pfam17823  334 ASPVPVLHTSMIPEveatsPTTQPSPLLPTQGAAGPGILLAPDQVATDATAGTASAGPTPRSSGDPKMLAMASCQLST 411
PHA03378 PHA03378
EBNA-3B; Provisional
457-890 7.73e-05

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 46.98  E-value: 7.73e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  457 TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTtPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPT 536
Cdd:PHA03378   444 TPHSQAPTVVLHRPPTQPLEGPTGPLSVQAPLEPWQPLPH-PQVTPVILHQPPAQGVQAHGSMLDLLEKDDEDMEQRVMA 522
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  537 TLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTtPKEPEPTTTKEPESTTRKEPEPTTPKEPEPT 616
Cdd:PHA03378   523 TLLPPSPPQPRAGRRAPCVYTEDLDIESDEPASTEPVHDQLLPAPGLG-PLQIQPLTSPTTSQLASSAPSYAQTPWPVPH 601
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  617 TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT---PKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEP 693
Cdd:PHA03378   602 PSQTPEPPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITfnvLVFPTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGA 681
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  694 EPTTPKEPEPTTRKEPepttPKEPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEeiQNKPEETTPASE 773
Cdd:PHA03378   682 NTMLPIQWAPGTMQPP----PRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGR--ARPPAAAPGRAR 755
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  774 DSDDSKTTLKPQKPTKAPKPTKKPTKAPKKPTSTKKPKTPKTRKPKTTPSPLKTTSATPELNTTPLEVML---------- 843
Cdd:PHA03378   756 PPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPTKQILrqlltggvkr 835
                          410       420       430       440
                   ....*....|....*....|....*....|....*....|....*....
gi 1907070835  844 --PTTTIPKQTPNPETAEVNPDHEDADGGEGEKPLIPGPPVLFPTAIPG 890
Cdd:PHA03378   836 grPSLKKPAALERQAAAGPTPSPGSGTSDKIVQAPVFYPPVLQPIQVMR 884
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
541-658 7.98e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 46.63  E-value: 7.98e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  541 PEPTTPKEPEPTTP-KEPEPTTlkePEPTTPKEPEPTTLKEP-EPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTP 618
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQA---AAAPAPAAAPAAAASAPaAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPP 452
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1907070835  619 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 658
Cdd:PRK14951   453 AQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
399-478 8.02e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 46.73  E-value: 8.02e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  399 STTRKEPEPTTPKEPEPTTPKEPEPTTPKePEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKEP 477
Cdd:PRK14950   375 APSPVRPTPAPSTRPKAAAAANIPPKEPV-RETATPPPVPPRPVAPPVPHTPESAPKLTRAAiPVDEKPKYTPPAPPKEE 453

                   .
gi 1907070835  478 E 478
Cdd:PRK14950   454 E 454
PHA03377 PHA03377
EBNA-3C; Provisional
399-698 8.23e-05

EBNA-3C; Provisional


Pssm-ID: 177614 [Multi-domain]  Cd Length: 1000  Bit Score: 46.97  E-value: 8.23e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  399 STTRKEPEPTTPKEPEPTTpKEPEPTTPKEPeptTPKEPEPTTLKEPEPTTPKEP-EPTTPKEPEP-------------- 463
Cdd:PHA03377   439 RSDEAEQAQSTPERPGPSD-QPSVPVEPAHL---TPVEHTTVILHQPPQSPPTVAiKPAPPPSRRRrgacvvydddiiev 514
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  464 ----TTPKEPEPTTPKEPEpttpKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLK 539
Cdd:PHA03377   515 idveTTEEEESVTQPAKPH----RKVQDGFQRSGRRQKRATPPKVSPSDRGPPKASPPVMAPPSTGPRVMATPSTGPRDM 590
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  540 EPEPTTPKEPEPTTPKEPEPTT-LKEPEPTTPKEPEPTTLKE-------PEPTTPKEPEPTTTKEPESTTRKEPEPTTPK 611
Cdd:PHA03377   591 APPSTGPRQQAKCKDGPPASGPhEKQPPSSAPRDMAPSVVRMflrerllEQSTGPKPKSFWEMRAGRDGSGIQQEPSSRR 670
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  612 EP--EPTTPKEPE-------PTTPK-EPEPTTPKEPEPTTPKEP----EPTTPKEPEPTTPKEPEPTTPKKPEPTTPKE- 676
Cdd:PHA03377   671 QPatQSTPPRPSWlpsvfvlPSVDAgRAQPSEESHLSSMSPTQPisheEQPRYEDPDDPLDLSLHPDQAPPPSHQAPYSg 750
                          330       340
                   ....*....|....*....|...
gi 1907070835  677 -PEPTTPKEPEPTTPKEPEPTTP 698
Cdd:PHA03377   751 hEEPQAQQAPYPGYWEPRPPQAP 773
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
399-575 8.27e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 46.63  E-value: 8.27e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  399 STTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKePEPTTPKEPEPTTPKEPEPTTPKEPE 478
Cdd:PRK08691   400 AETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPDEAQTAAGTAQT-SAKSIQTASEAETPPENQVSKNKAAD 478
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  479 PTTPKEPEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE---PEPTTLKEPEPTTPKEPEpttp 554
Cdd:PRK08691   479 NETDAPLSEVPSENPIQATPnDEAVETETFAHEAPAEPFYGYGFPDNDCPPEDGAeipPPDWEHAAPADTAGGGAD---- 554
                          170       180
                   ....*....|....*....|.
gi 1907070835  555 KEPEPTTLKEPEptTPKEPEP 575
Cdd:PRK08691   555 EEAEAGGIGGNN--TPSAPPP 573
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
404-586 8.28e-05

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 46.84  E-value: 8.28e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  404 EPEPTTPKEPEPTTPKEPE-----------------------PTTPKEPEPTTPKEPEPT----TLKEPEPTTPKEPEPT 456
Cdd:PLN03209   340 KPVPTKPVTPEAPSPPIEEeppqpkavvprplspytayedlkPPTSPIPTPPSSSPASSKsvdaVAKPAEPDVVPSPGSA 419
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  457 T---PKEPEPTTPKEPEPTTP--KEPEPTTPKEPEPTTPKEPEPTTPKEP-EPTTPKEPEPTTPKEPEPTTPKEPEPTTP 530
Cdd:PLN03209   420 SnvpEVEPAQVEAKKTRPLSPyaRYEDLKPPTSPSPTAPTGVSPSVSSTSsVPAVPDTAPATAATDAAAPPPANMRPLSP 499
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  531 ----KEPEPTTLKEPEPTTPKEPEPTTPKepEPTTLKEPEPTTPKEPEPTTLKEPEPTTP 586
Cdd:PLN03209   500 yavyDDLKPPTSPSPAAPVGKVAPSSTNE--VVKVGNSAPPTALADEQHHAQPKPRPLSP 557
PHA03369 PHA03369
capsid maturational protease; Provisional
561-676 8.41e-05

capsid maturational protease; Provisional


Pssm-ID: 223061 [Multi-domain]  Cd Length: 663  Bit Score: 46.92  E-value: 8.41e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  561 TLKEPEPTTPKEPepttlkEPEPTTPKEPEPTTTKEPEST-TRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP-E 638
Cdd:PHA03369   350 TASLTAPSRVLAA------AAKVAVIAAPQTHTGPADRQRpQRPDGIPYSVPARSPMTAYPPVPQFCGDPGLVSPYNPqS 423
                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1907070835  639 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKE 676
Cdd:PHA03369   424 PGTSYGPEPVGPVPPQPTNPYVMPISMANMVYPGHPQE 461
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
539-607 9.16e-05

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 43.63  E-value: 9.16e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070835  539 KEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEP 607
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 109
PRK10819 PRK10819
transport protein TonB; Provisional
559-710 9.45e-05

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 45.44  E-value: 9.45e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  559 PTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESttrkEPEPTTpkEPEPTTPKePEPTTPKEPEPTTPKEPE 638
Cdd:PRK10819    36 HQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEP----EPEPIP--EPPKEAPV-VIPKPEPKPKPKPKPKPK 108
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907070835  639 PTTPKEPEPTTPKEPepttpkePEPTTPKKPEPTTPKEPEPTTPkepePTTPKEPEPTTPKEPEPTTRKEPE 710
Cdd:PRK10819   109 PVKKVEEQPKREVKP-------VEPRPASPFENTAPARPTSSTA----TAAASKPVTSVSSGPRALSRNQPQ 169
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
570-726 9.73e-05

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 46.50  E-value: 9.73e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  570 PKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPeptt 649
Cdd:PTZ00441   283 PVEPEPLPVPAPVPPTPEDDNPRPTDDEFAVPNFNEGLDVPDNPQDPVPPPNEGKDGNPNEENLFPPGDDEVPDES---- 358
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070835  650 pkePEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEpttpKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPE 726
Cdd:PTZ00441   359 ---NVPPNPPNVPGGSNSEFSSDVENPPNPPNPDIPE----QEPNIPEDSNKEVPEDVPMEPEDDRDNNFNEPKKPE 428
PRK10819 PRK10819
transport protein TonB; Provisional
428-570 1.05e-04

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 45.06  E-value: 1.05e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  428 EPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPkEPEPTtpKEPEpttpKEPEPttpkEPEPTTPKE-PEPTTPKEPEPTTP 506
Cdd:PRK10819    36 HQVIELPAPAQPISVTMVAPADLEPPQAVQP-PPEPV--VEPE----PEPEP----IPEPPKEAPvVIPKPEPKPKPKPK 104
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070835  507 KEPEPTTPKEPEP---TTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTP 570
Cdd:PRK10819   105 PKPKPVKKVEEQPkreVKPVEPRPASPFENTAPARPTSSTATAAASKPVTSVSSGPRALSRNQPQYP 171
dnaA PRK14086
chromosomal replication initiator protein DnaA;
458-680 1.10e-04

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 46.36  E-value: 1.10e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  458 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPkepePTTPKEPEPttpkePEPTT 537
Cdd:PRK14086    87 TVDPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTAR----PAYPAYQQR-----PEPGA 157
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  538 LKEPEPTTPKEPEPTTPKEPEPttlkepePTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRkePEPTTPKEPEPTT 617
Cdd:PRK14086   158 WPRAADDYGWQQQRLGFPPRAP-------YASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPR--PDWDRPRRDRTDR 228
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907070835  618 PkEPEPTTPKEPEPTTPKEPEPTTPKEPEptTPKEPEPtTPKEPEPtTPKKPEPTTPKEPEPT 680
Cdd:PRK14086   229 P-EPPPGAGHVHRGGPGPPERDDAPVVPI--RPSAPGP-LAAQPAP-APGPGEPTARLNPKYT 286
PRK11633 PRK11633
cell division protein DedD; Provisional
567-683 1.11e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 44.99  E-value: 1.11e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  567 PTTPK---EPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPttpkepepttpkepEPTTPK 643
Cdd:PRK11633    42 PLVPKpgdRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEP--------------APVEPP 107
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1907070835  644 EPEPTTPKEPEPTTPKEPEPTTPKKPEPtTPKEPEPTTPK 683
Cdd:PRK11633   108 KPKPVEKPKPKPKPQQKVEAPPAPKPEP-KPVVEEKAAPT 146
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
530-726 1.12e-04

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 46.11  E-value: 1.12e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  530 PKEPEPTTLKEPEPTTPKEPEPTTPKE----PEPTT-LKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKE 604
Cdd:PTZ00441   283 PVEPEPLPVPAPVPPTPEDDNPRPTDDefavPNFNEgLDVPDNPQDPVPPPNEGKDGNPNEENLFPPGDDEVPDESNVPP 362
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  605 PEPTTP----KEPEPTTPKEPEPTTPKEPEpttpKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPT 680
Cdd:PTZ00441   363 NPPNVPggsnSEFSSDVENPPNPPNPDIPE----QEPNIPEDSNKEVPEDVPMEPEDDRDNNFNEPKKPENKGDGQNEPV 438
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907070835  681 TPK----------EPEPTTPKEPEPTTPKEPEP-------TTRKEPEPTTPKEPEPTTPKEPE 726
Cdd:PTZ00441   439 IPKpldnerdqsnKNKQVNPGNRHNSEDRYTRPhgrnnenRNYNNKNSDIPKHPERSEHEQPE 501
PHA03264 PHA03264
envelope glycoprotein D; Provisional
456-561 1.14e-04

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 46.15  E-value: 1.14e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  456 TTPKEPEPTTPKEPEPTtPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 535
Cdd:PHA03264   253 VVPPYFEESKGYEPPPA-PSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPGPPRPAPD 331
                           90       100
                   ....*....|....*....|....*..
gi 1907070835  536 TTLKEPEPTTPKEP-EPTTPKEPEPTT 561
Cdd:PHA03264   332 ADRPEGWPSLEAITfPPPTPATPAVPR 358
PRK10819 PRK10819
transport protein TonB; Provisional
629-732 1.14e-04

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 45.06  E-value: 1.14e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  629 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTtPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKE 708
Cdd:PRK10819    42 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPP-KEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKRE 120
                           90       100
                   ....*....|....*....|....
gi 1907070835  709 PEPTTPKEPEPTTPKEPEPTTPKK 732
Cdd:PRK10819   121 VKPVEPRPASPFENTAPARPTSST 144
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
241-622 1.17e-04

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 46.22  E-value: 1.17e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  241 SKVTTSPKTTAAKPVTPKPSLAPNSETSKEASLASNKETTvetkettatnkQSSASKKKTTSAKETRSAEKTSDKDVEPT 320
Cdd:PTZ00449   543 PKEGGKPGETKEGEVGKKPGPAKEHKPSKIPTLSKKPEFP-----------KDPKHPKDPEEPKKPKRPRSAQRPTRPKS 611
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  321 STTPKNSAPTTTKKPVTTTKEPVPTTPKEPEPTTPKEPPPTTKKPEPTTPKEPEPTTPKEPEPTTTKEPEPTTTKEPEST 400
Cdd:PTZ00449   612 PKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDDYLDAAAKSKETKT 691
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  401 TRKEPEPTTPKEPEPTTPKEPEPTTPKEP-EPTTPKEPEP--TTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 477
Cdd:PTZ00449   692 TVVLDESFESILKETLPETPGTPFTTPRPlPPKLPRDEEFpfEPIGDPDAEQPDDIEFFTPPEEERTFFHETPADTPLPD 771
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  478 EPTTPKEPEPTTPKEPEPTTPKEpEPTTPKEPEPTTPKEpEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEP--EPTTPK 555
Cdd:PTZ00449   772 ILAEEFKEEDIHAETGEPDEAMK-RPDSPSEHEDKPPGD-HPSLPKKRHRLDGLALSTTDLESDAGRIAKDAsgKIVKLK 849
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  556 EPEP----TTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPE 622
Cdd:PTZ00449   850 RSKSfddlTTVEEAEEMGAEARKIVVDDDGTEADDEDTHPPEEKHKSEVRRRRPPKKPSKPKKPSKPKKPK 920
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
583-771 1.20e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 46.41  E-value: 1.20e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  583 PTTPKEPEPTTTKEPESTTRKEPEPTTPkepEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 662
Cdd:PRK12323   375 ATAAAAPVAQPAPAAAAPAAAAPAPAAP---PAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  663 PTTPKKPEPTTPKEPEPttpkePEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTTSPKT 742
Cdd:PRK12323   452 PAPAAAPAAAARPAAAG-----PRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESI 526
                          170       180
                   ....*....|....*....|....*....
gi 1907070835  743 TTLKATTLAPKVTAPAEEIQNKPEETTPA 771
Cdd:PRK12323   527 PDPATADPDDAFETLAPAPAAAPAPRAAA 555
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
551-646 1.20e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 46.34  E-value: 1.20e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  551 PTTPKEPEPTTLKEPEPTTPK--EPEPTTLKEPEPTTPKEPEPTTTKEPESTtrkePEPTTPkePEPTTPKEPEPTTPKE 628
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRPTpaPSTRPKAAAAANIPPKEPVRETATPPPVP----PRPVAP--PVPHTPESAPKLTRAA 435
                           90
                   ....*....|....*....
gi 1907070835  629 -PEPTTPKEPEPTTPKEPE 646
Cdd:PRK14950   436 iPVDEKPKYTPPAPPKEEE 454
PRK11633 PRK11633
cell division protein DedD; Provisional
453-554 1.25e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 44.61  E-value: 1.25e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  453 PEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPKEPEPTTPkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 531
Cdd:PRK11633    45 PKPGDRDEPDMMPAaTQALPTQPPEGAAEAVRAGDAAAP-SLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQ 123
                           90       100
                   ....*....|....*....|...
gi 1907070835  532 EPEPTTlkEPEPTTPKEPEPTTP 554
Cdd:PRK11633   124 KVEAPP--APKPEPKPVVEEKAA 144
PRK11633 PRK11633
cell division protein DedD; Provisional
629-730 1.31e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 44.61  E-value: 1.31e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  629 PEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPKEPEPTTPKKpEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRK 707
Cdd:PRK11633    45 PKPGDRDEPDMMPAaTQALPTQPPEGAAEAVRAGDAAAPSL-DPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQ 123
                           90       100
                   ....*....|....*....|...
gi 1907070835  708 EPEPttPKEPEPTTPKEPEPTTP 730
Cdd:PRK11633   124 KVEA--PPAPKPEPKPVVEEKAA 144
PRK10819 PRK10819
transport protein TonB; Provisional
501-623 1.31e-04

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 45.06  E-value: 1.31e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  501 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPttlkEPEPTT---PKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTT 577
Cdd:PRK10819    42 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEP----EPEPIPeppKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQP 117
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 1907070835  578 LKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKePEPTTPKEPEP 623
Cdd:PRK10819   118 KREVKPVEPRPASPFENTAPARPTSSTATAAASK-PVTSVSSGPRA 162
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
632-715 1.39e-04

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 45.01  E-value: 1.39e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  632 TTPKEPEPTTPKEPEPTTPKEPEPTT-PKEPEPttpkKPEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKepEPTTRKEP 709
Cdd:PRK13042    23 TTTQAANATTPSSTKVEAPQSTPPSTkVEAPQS----KPNATTPPSTKVEAPQQtPNATTPSSTKVETPQ--SPTTKQVP 96

                   ....*.
gi 1907070835  710 EPTTPK 715
Cdd:PRK13042    97 TEINPK 102
DUF4045 pfam13254
Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. ...
403-551 1.42e-04

Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length.


Pssm-ID: 433066 [Multi-domain]  Cd Length: 415  Bit Score: 45.54  E-value: 1.42e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  403 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP-------TTLKEPEPTTPKEPEPTTPKEPEP---TTPKEPEPT 472
Cdd:pfam13254  201 KEVTPVGLMRSPAPGGHSKSPSVSGISADSSPTKEEPseeadtlSTDKEQSPAPTSASEPPPKTKELPkdsEEPAAPSKS 280
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  473 TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKePEPTTPKEPEPTTLK--EPEPTTPKEPE 550
Cdd:pfam13254  281 AEASTEKKEPDTESSPETSSEKSAPSLLSPVSKASIDKPLSSPDRDPLSPK-PKPQSPPKDFRANLRsrEVPKDKSKKDE 359

                   .
gi 1907070835  551 P 551
Cdd:pfam13254  360 P 360
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
435-707 1.46e-04

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 411407 [Multi-domain]  Cd Length: 684  Bit Score: 46.16  E-value: 1.46e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  435 KEPEPTTLKEPEptTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE-------PEPTTPKEPEpTTPKEPEPTTPK 507
Cdd:NF033838   216 KKAEATRLEKIK--TDREKAEEEAKRRADAKLKEAVEKNVATSEQDKPKRrakrgvlGEPATPDKKE-NDAKSSDSSVGE 292
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  508 EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPE----PT-TPKEPE------PTTPKEPEPTTLKEpEPTTPKEPEPt 576
Cdd:NF033838   293 ETLPSPSLKPEKKVAEAEKKVEEAKKKAKDQKEEDrrnyPTnTYKTLEleiaesDVKVKEAELELVKE-EAKEPRNEEK- 370
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  577 tLKEP-EPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEpEPTTPKEPEPTtpkePEPTTPKePEPTTPKEpep 655
Cdd:NF033838   371 -IKQAkAKVESKKAEATRLEKIKTDRKKAEEEAKRKAAEEDKVKE-KPAEQPQPAPA----PQPEKPA-PKPEKPAE--- 440
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1907070835  656 tTPKEPEPTTPKKPEPTTPKEPEpttpkEPEPTTPKEPePTTPKEPEPTTRK 707
Cdd:NF033838   441 -QPKAEKPADQQAEEDYARRSEE-----EYNRLTQQQP-PKTEKPAQPSTPK 485
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
399-559 1.49e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 46.00  E-value: 1.49e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  399 STTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP---- 474
Cdd:PRK07003   438 RGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPaaas 517
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  475 KEPEPTTPKEPEPTTPkEPEPTTPKEP--------------------------EPTTPKEPEPTTPKEPEPTTPKEPEPT 528
Cdd:PRK07003   518 REDAPAAAAPPAPEAR-PPTPAAAAPAaraggaaaaldvlrnagmrvssdrgaRAAAAAKPAAAPAAAPKPAAPRVAVQV 596
                          170       180       190
                   ....*....|....*....|....*....|..
gi 1907070835  529 -TPKEPEPTTLKEPEPTTPKEPEPTTPKEPEP 559
Cdd:PRK07003   597 pTPRARAATGDAPPNGAARAEQAAESRGAPPP 628
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
541-620 1.51e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 46.04  E-value: 1.51e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  541 PEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKE 620
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PRK10819 PRK10819
transport protein TonB; Provisional
485-607 1.51e-04

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 44.67  E-value: 1.51e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  485 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTtPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKE 564
Cdd:PRK10819    42 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPP-KEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKRE 120
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1907070835  565 PEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKePESTTRKEPEP 607
Cdd:PRK10819   121 VKPVEPRPASPFENTAPARPTSSTATAAASK-PVTSVSSGPRA 162
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
443-589 1.56e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 45.87  E-value: 1.56e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  443 KEPEP-TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPT--TPKEPEP 519
Cdd:PRK14949   637 KKSSAdRKPKTPPSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVPDPYdrPPWEEAP 716
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907070835  520 TTpkEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTP--KEPEPTTLKEPEPTTPKEP 589
Cdd:PRK14949   717 EV--ASANDGPNNAAEGNLSESVEDASNSELQAVEQQATHQPQVQAEAQSPasTTALTQTSSEVQDTELNLV 786
PRK11633 PRK11633
cell division protein DedD; Provisional
461-561 1.66e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 44.22  E-value: 1.66e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  461 PEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPKEPEPTTPkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLK 539
Cdd:PRK11633    45 PKPGDRDEPDMMPAaTQALPTQPPEGAAEAVRAGDAAAP-SLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQ 123
                           90       100
                   ....*....|....*....|..
gi 1907070835  540 EPEPttPKEPEPTTPKEPEPTT 561
Cdd:PRK11633   124 KVEA--PPAPKPEPKPVVEEKA 143
PRK11633 PRK11633
cell division protein DedD; Provisional
621-723 1.70e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 44.22  E-value: 1.70e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  621 PEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPKEPEPTTPkEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 699
Cdd:PRK11633    45 PKPGDRDEPDMMPAaTQALPTQPPEGAAEAVRAGDAAAP-SLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQ 123
                           90       100
                   ....*....|....*....|....
gi 1907070835  700 EPEPTTRKEPEPtTPKEPEPTTPK 723
Cdd:PRK11633   124 KVEAPPAPKPEP-KPVVEEKAAPT 146
PRK11633 PRK11633
cell division protein DedD; Provisional
429-530 1.70e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 44.22  E-value: 1.70e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  429 PEPTTPKEPEPT-TLKEPEPTTPKEPEPTTPKEPEPTTPkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 507
Cdd:PRK11633    45 PKPGDRDEPDMMpAATQALPTQPPEGAAEAVRAGDAAAP-SLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQ 123
                           90       100
                   ....*....|....*....|...
gi 1907070835  508 EPEPttPKEPEPTTPKEPEPTTP 530
Cdd:PRK11633   124 KVEA--PPAPKPEPKPVVEEKAA 144
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
458-610 2.06e-04

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 45.35  E-value: 2.06e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  458 PKEPEPTT-PKEPEPTTPKEPEPTTPKEP-EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP--KEP 533
Cdd:PRK13108   295 ALEREPAElAAAAVASAASAVGPVGPGEPnQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEAdiERE 374
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070835  534 EPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPtTPKEPEPTTTKEPesttrkEPEPTTP 610
Cdd:PRK13108   375 QPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIP-DPAKPDELAVAGP------GDDPAEP 444
PHA03264 PHA03264
envelope glycoprotein D; Provisional
408-513 2.10e-04

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 45.00  E-value: 2.10e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  408 TTPKEPEPTTPKEPEPTtPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 487
Cdd:PHA03264   253 VVPPYFEESKGYEPPPA-PSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPGPPRPAPD 331
                           90       100
                   ....*....|....*....|....*..
gi 1907070835  488 TTPKEPEPTTPKEP-EPTTPKEPEPTT 513
Cdd:PHA03264   332 ADRPEGWPSLEAITfPPPTPATPAVPR 358
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
566-778 2.10e-04

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 45.30  E-value: 2.10e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  566 EPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT-------PKEPE 638
Cdd:PLN03209   308 ETTAPLTPMEELLAKIPSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTayedlkpPTSPI 387
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  639 PTTPKEPEP------TTPKEPEPTTPKEPEPTT---PKKPEPTTPKEPEPTTP--KEPEPTTPKEPEPTTPKEPEPTTRK 707
Cdd:PLN03209   388 PTPPSSSPAssksvdAVAKPAEPDVVPSPGSASnvpEVEPAQVEAKKTRPLSPyaRYEDLKPPTSPSPTAPTGVSPSVSS 467
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907070835  708 EP-EPTTPKEPEPTTPKEPE-PTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQNKPEETTPASEDSDDS 778
Cdd:PLN03209   468 TSsVPAVPDTAPATAATDAAaPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTA 540
PRK10263 PRK10263
DNA translocase FtsK; Provisional
417-559 2.21e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 45.46  E-value: 2.21e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  417 TPKEP--EPTTPKEPEPTTPKEPEPTTLKEPEPTTPkepePTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 494
Cdd:PRK10263   739 GPHEPlfTPIVEPVQQPQQPVAPQQQYQQPQQPVAP----QPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQ 814
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907070835  495 PTTPKEPEPTTPkEPEPTTPKEPEPTTPKEP--EPTTPKEPEPTTLKEPEPTTPKEPEPTT-PKEPEP 559
Cdd:PRK10263   815 PQYQQPQQPVAP-QPQYQQPQQPVAPQPQDTllHPLLMRNGDSRPLHKPTTPLPSLDLLTPpPSEVEP 881
dnaA PRK14086
chromosomal replication initiator protein DnaA;
540-728 2.26e-04

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 45.20  E-value: 2.26e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  540 EPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKE-PESTTRKEPEPtTPKEPEPTTP 618
Cdd:PRK14086    89 DPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAyPAYQQRPEPGA-WPRAADDYGW 167
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  619 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTpkKPEPTTPKEPEPTTPkEPEPTTPKEPE---- 694
Cdd:PRK14086   168 QQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHP--RPDWDRPRRDRTDRP-EPPPGAGHVHRggpg 244
                          170       180       190
                   ....*....|....*....|....*....|....*
gi 1907070835  695 -PTTPKEPEPTTRKEPEPTTPKEPEPtTPKEPEPT 728
Cdd:PRK14086   245 pPERDDAPVVPIRPSAPGPLAAQPAP-APGPGEPT 278
PHA03264 PHA03264
envelope glycoprotein D; Provisional
608-717 2.45e-04

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 45.00  E-value: 2.45e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  608 TTPKEPEPTTPKEPEPTtPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEP 687
Cdd:PHA03264   253 VVPPYFEESKGYEPPPA-PSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPGPPRPAPD 331
                           90       100       110
                   ....*....|....*....|....*....|
gi 1907070835  688 TTPKEPEPTTPKEPEPTtrkePEPTTPKEP 717
Cdd:PHA03264   332 ADRPEGWPSLEAITFPP----PTPATPAVP 357
PRK11633 PRK11633
cell division protein DedD; Provisional
493-593 2.52e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 43.84  E-value: 2.52e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  493 PEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPKEPEPTTPkEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPK 571
Cdd:PRK11633    45 PKPGDRDEPDMMPAaTQALPTQPPEGAAEAVRAGDAAAP-SLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQ 123
                           90       100
                   ....*....|....*....|..
gi 1907070835  572 EPEPTTlkEPEPTTPKEPEPTT 593
Cdd:PRK11633   124 KVEAPP--APKPEPKPVVEEKA 143
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
517-634 2.92e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 45.09  E-value: 2.92e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  517 PEPTTPKEPEPTTP-KEPEPTTlkePEPTTPKEPEPT-TPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTT 594
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQA---AAAPAPAAAPAAaASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPP 452
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1907070835  595 KEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 634
Cdd:PRK14951   453 AQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK10905 PRK10905
cell division protein DamX; Validated
616-731 2.97e-04

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 44.16  E-value: 2.97e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  616 TTPKEPEPTTPKEPEPTTPKEPEPTTP------KEPEPTTPKEPEPTTPKEPEPTT---PKKPEPTTPKEPEPT--TPKE 684
Cdd:PRK10905   106 TQPQNQQQLNNVAVNSTLPTEPATVAPvrngnaSRQTAKTQTAERPATTRPARKQAviePKKPQATAKTEPKPVaqTPKR 185
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1907070835  685 PEPTTPKEPepttPKEPEPTTRKEPEPTTPKEPEPT-TPKEPEPTTPK 731
Cdd:PRK10905   186 TEPAAPVAS----TKAPAATSTPAPKETATTAPVQTaSPAQTTATPAA 229
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
586-727 3.19e-04

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 44.58  E-value: 3.19e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  586 PKEPEPTT-TKEPESTTRKEPEPTTPKEP-EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKePEPTTPKEPEP 663
Cdd:PRK13108   295 ALEREPAElAAAAVASAASAVGPVGPGEPnQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPA-VEETSEADIER 373
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070835  664 TTPKKPEPTTPKEPEPTTPKEPE-PTTPKEPEPTTPKEPEPTTRKEPEPTT-PKEPEPTTPKEPEP 727
Cdd:PRK13108   374 EQPGDLAGQAPAAHQVDAEAASAaPEEPAALASEAHDETEPEVPEKAAPIPdPAKPDELAVAGPGD 439
PHA03169 PHA03169
hypothetical protein; Provisional
419-627 3.38e-04

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 44.58  E-value: 3.38e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  419 KEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPttpKEPEPTTP 498
Cdd:PHA03169    44 AKPAPPAPTTSGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAE---ELASGLSP 120
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  499 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTL 578
Cdd:PHA03169   121 ENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTS 200
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*....
gi 1907070835  579 KEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPK 627
Cdd:PHA03169   201 SPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFPG 249
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
629-730 3.41e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 44.71  E-value: 3.41e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  629 PEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPkePEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP--KEPEPTT 705
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAvaLAPAPPA 453
                           90       100
                   ....*....|....*....|....*...
gi 1907070835  706 RKEPEPTTPK---EPEPTTPKEPEPTTP 730
Cdd:PRK14951   454 QAAPETVAIPvrvAPEPAVASAAPAPAA 481
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
598-773 3.41e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.87  E-value: 3.41e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  598 ESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEP 677
Cdd:PRK12323   371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAP 450
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  678 EPTTPKEPEPTTP---KEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKV 754
Cdd:PRK12323   451 APAPAAAPAAAARpaaAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPA 530
                          170
                   ....*....|....*....
gi 1907070835  755 TAPAEEIQNKPEETTPASE 773
Cdd:PRK12323   531 TADPDDAFETLAPAPAAAP 549
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
404-516 3.47e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 44.86  E-value: 3.47e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  404 EPEPTTPKEPEPTTP--KEPEPTTPKEPEPTTPKEPEPTTlKEPEPTTPKEPEPTTPKEPepttPKEPEPTTPKEPEPTT 481
Cdd:PRK07994   414 PLPETTSQLLAARQQlqRAQGATKAKKSEPAAASRARPVN-SALERLASVRPAPSALEKA----PAKKEAYRWKATNPVE 488
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070835  482 PKEPEPTTPKEPEP--TTPKEPEPTTPKEPEPTTPKE 516
Cdd:PRK07994   489 VKKEPVATPKALKKalEHEKTPELAAKLAAEAIERDP 525
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
560-620 3.51e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 44.12  E-value: 3.51e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  560 TTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKE 620
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
407-534 3.57e-04

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 44.58  E-value: 3.57e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  407 PTTPKEPEPTTpkEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTP----KEPEPTTPKEPE-PTTPKEPEPTT 481
Cdd:PRK13108   320 PGEPNQPDDVA--EAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEAdierEQPGDLAGQAPAaHQVDAEAASAA 397
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1907070835  482 PKEPEPTTPKEPEPTTPKEPEPTTPKepepTTPKEPEPTTPKEPEPtTPKEPE 534
Cdd:PRK13108   398 PEEPAALASEAHDETEPEVPEKAAPI----PDPAKPDELAVAGPGD-DPAEPD 445
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
599-683 3.60e-04

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 43.85  E-value: 3.60e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  599 STTRKEPEPTTPKEPEPTTPKEPEPTT-PKEPEPTtpkePEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKkpEPTTPKE 676
Cdd:PRK13042    22 TTTTQAANATTPSSTKVEAPQSTPPSTkVEAPQSK----PNATTPPSTKVEAPQQtPNATTPSSTKVETPQ--SPTTKQV 95

                   ....*..
gi 1907070835  677 PEPTTPK 683
Cdd:PRK13042    96 PTEINPK 102
TonB COG0810
Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope ...
558-692 3.85e-04

Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 223880 [Multi-domain]  Cd Length: 244  Bit Score: 43.62  E-value: 3.85e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  558 EPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKE--PESTTRKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTP 634
Cdd:COG0810     35 ELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPetPPEPTPPKPKEKPKPEKKPKKPKpKPKPKPKPKPKVKPQ 114
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1907070835  635 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKE 692
Cdd:COG0810    115 PKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLSGLRRAIRRAPRYPAQ 172
PRK12757 PRK12757
cell division protein FtsN; Provisional
574-654 3.95e-04

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 43.49  E-value: 3.95e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  574 EPTTLKE-PE-PTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 651
Cdd:PRK12757    98 QPTQLSEvPYnEQTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEA 177

                   ...
gi 1907070835  652 EPE 654
Cdd:PRK12757   178 EKE 180
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
448-531 4.00e-04

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 43.85  E-value: 4.00e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  448 TTPKEPEPTTPKEPEPTTPKEPEPTT-PKEPEPTtpkePEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKepEPTTPKEP 525
Cdd:PRK13042    23 TTTQAANATTPSSTKVEAPQSTPPSTkVEAPQSK----PNATTPPSTKVEAPQQtPNATTPSSTKVETPQ--SPTTKQVP 96

                   ....*.
gi 1907070835  526 EPTTPK 531
Cdd:PRK13042    97 TEINPK 102
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
608-691 4.04e-04

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 43.85  E-value: 4.04e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  608 TTPKEPEPTTPKEPEPTTPKEPEPTT-PKEPEPTtpkePEPTTPKEPEPTTPKE-PEPTTPKKPEPTTPKepEPTTPKEP 685
Cdd:PRK13042    23 TTTQAANATTPSSTKVEAPQSTPPSTkVEAPQSK----PNATTPPSTKVEAPQQtPNATTPSSTKVETPQ--SPTTKQVP 96

                   ....*.
gi 1907070835  686 EPTTPK 691
Cdd:PRK13042    97 TEINPK 102
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
501-630 4.14e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 44.32  E-value: 4.14e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  501 PEPTTPKEPEPTTP-KEPEPTTPKepePTTPKEPEPTTLKEPepttpkePEPTTPKEPEPTTLKEPEPTTPKEPEPTTLK 579
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQAAA---APAPAAAPAAAASAP-------AAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV 445
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  580 EPEPTTPKEPEPTTTKEPestTRKEPEPTTPKEPEPTTPKEPEPTTPKEPE 630
Cdd:PRK14951   446 ALAPAPPAQAAPETVAIP---VRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
440-523 4.15e-04

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 43.85  E-value: 4.15e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  440 TTLKEPEPTTPKEPEPTTPKEPEPTT-PKEPEPTtpkePEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKepEPTTPKEP 517
Cdd:PRK13042    23 TTTQAANATTPSSTKVEAPQSTPPSTkVEAPQSK----PNATTPPSTKVEAPQQtPNATTPSSTKVETPQ--SPTTKQVP 96

                   ....*.
gi 1907070835  518 EPTTPK 523
Cdd:PRK13042    97 TEINPK 102
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
592-675 4.18e-04

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 43.85  E-value: 4.18e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  592 TTTKEPESTTRKEPEPTTPKEPEPTT-PKEPEPTtpkePEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKepEPTTPKKP 669
Cdd:PRK13042    23 TTTQAANATTPSSTKVEAPQSTPPSTkVEAPQSK----PNATTPPSTKVEAPQQtPNATTPSSTKVETPQ--SPTTKQVP 96

                   ....*.
gi 1907070835  670 EPTTPK 675
Cdd:PRK13042    97 TEINPK 102
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
668-732 4.34e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 44.50  E-value: 4.34e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907070835  668 KPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPKK 732
Cdd:PRK12270    37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPA 101
TonB COG0810
Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope ...
521-676 4.57e-04

Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 223880 [Multi-domain]  Cd Length: 244  Bit Score: 43.24  E-value: 4.57e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  521 TPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKepest 600
Cdd:COG0810     24 VFLHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPK----- 98
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070835  601 trKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKE 676
Cdd:COG0810     99 --PKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLSGLRRAIRRAPRYPAQ 172
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
592-652 4.84e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 43.73  E-value: 4.84e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  592 TTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 652
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
493-613 5.17e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.93  E-value: 5.17e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  493 PEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPkePEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPK 571
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPA 453
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1907070835  572 EPEPTTLKEPEPTTPkEPePTTTKEPESTTRKEPEPTTPKEP 613
Cdd:PRK14951   454 QAAPETVAIPVRVAP-EP-AVASAAPAPAAAPAAARLTPTEE 493
ZipA COG3115
Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome ...
456-579 5.30e-04

Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225657 [Multi-domain]  Cd Length: 324  Bit Score: 43.70  E-value: 5.30e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  456 TTPKEPEPTTPKEPEPTTPKEPE--PTTPKEPEPTTPKEPEPTTPKEPEPttPKEPEPTTPKEPEPttPKEPEPTTPkEP 533
Cdd:COG3115     68 RKNEAPQFTQEHEAARQSPQHQYqpEYASAQIKIPVPQPPQISDPPAHPQ--PTQPALDQEQPPEE--ARQPVLPQE-AP 142
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 1907070835  534 EPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLK 579
Cdd:COG3115    143 APQPVHSAAPQPAVQTVQPAVPEQQVQPEEVVEPAPEVKRPPRKDT 188
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
533-650 5.45e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.93  E-value: 5.45e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  533 PEPTTLKEPEPTTP-KEPEPTTPKEPEPTTlkePEPT-TPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTP 610
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQAAAAPAPAA---APAAaASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPP 452
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1907070835  611 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 650
Cdd:PRK14951   453 AQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK10819 PRK10819
transport protein TonB; Provisional
453-577 5.50e-04

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 43.13  E-value: 5.50e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  453 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEpttpKEPEPttpkEPEPTTPKE-PEPTTPKEPEPTTPKEPEPTTPK 531
Cdd:PRK10819    42 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPE----PEPEP----IPEPPKEAPvVIPKPEPKPKPKPKPKPKPVKKV 113
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 1907070835  532 EPEPTtlKEPEPTTPKEPEPTTPKEPEPTTlkePEPTTPKEPEPTT 577
Cdd:PRK10819   114 EEQPK--REVKPVEPRPASPFENTAPARPT---SSTATAAASKPVT 154
ZipA COG3115
Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome ...
433-585 5.78e-04

Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225657 [Multi-domain]  Cd Length: 324  Bit Score: 43.32  E-value: 5.78e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  433 TPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKePEPTTPKEPEPTTPKEPE--PTTPKEPEPTTPKEPEPTTPKEPE 510
Cdd:COG3115     38 RPLKRMKSKRDDDPYDEVADDEGVGEVRVVRKNEA-PQFTQEHEAARQSPQHQYqpEYASAQIKIPVPQPPQISDPPAHP 116
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907070835  511 PttPKEPEPTTPKEPEPttPKEPePTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTT 585
Cdd:COG3115    117 Q--PTQPALDQEQPPEE--ARQP-VLPQEAPAPQPVHSAAPQPAVQTVQPAVPEQQVQPEEVVEPAPEVKRPPRK 186
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
401-468 5.81e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 43.73  E-value: 5.81e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907070835  401 TRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKE 468
Cdd:TIGR00601   75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
402-508 5.88e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 44.09  E-value: 5.88e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  402 RKEPEPTTPKEPEPTTPKEPEPTtPKEPEPTTPKEPEPTTLKEPepttPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 481
Cdd:PRK07994   430 QRAQGATKAKKSEPAAASRARPV-NSALERLASVRPAPSALEKA----PAKKEAYRWKATNPVEVKKEPVATPKALKKAL 504
                           90       100
                   ....*....|....*....|....*..
gi 1907070835  482 PKEpepttpKEPEPTTPKEPEPTTPKE 508
Cdd:PRK07994   505 EHE------KTPELAAKLAAEAIERDP 525
PRK14960 PRK14960
DNA polymerase III subunit gamma/tau;
434-557 6.29e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237868 [Multi-domain]  Cd Length: 702  Bit Score: 43.88  E-value: 6.29e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  434 PKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPT------TPKEPEPTTPKEP--EPTTPKEPEPTTPKEPEPTT 505
Cdd:PRK14960   407 PAMVEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPQPNqdlmvfDPNHHELIGLESAvvQETVSVLEEDFIPVPEQKLV 486
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1907070835  506 PKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEP 557
Cdd:PRK14960   487 QVQAETQVKQiEPEPASTAEPIGLFEASSAEFSLAQDTSAYDLVSEPVIEQQS 539
TonB COG0810
Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope ...
502-629 6.44e-04

Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 223880 [Multi-domain]  Cd Length: 244  Bit Score: 42.85  E-value: 6.44e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  502 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPttpkePEPTTPKEPEPTtlKEPEPTTPKEPEPTTLKEP 581
Cdd:COG0810     35 ELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETP-----PEPTPPKPKEKP--KPEKKPKKPKPKPKPKPKP 107
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1907070835  582 EPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEP 629
Cdd:COG0810    108 KPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASY 155
PRK14960 PRK14960
DNA polymerase III subunit gamma/tau;
503-685 6.46e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237868 [Multi-domain]  Cd Length: 702  Bit Score: 43.88  E-value: 6.46e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  503 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPttlkEPEPTTPKEPEPTTLKEPE 582
Cdd:PRK14960   360 PLAPNEILVSEPVQQNGQAEVGLNSQAQTAQEITPVSAVQPVEVISQPAMVEPEPEP----EPEPEPEPEPEPEPEPEPE 435
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  583 PTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPKEP 661
Cdd:PRK14960   436 PEPEPEPQPNQDLMVFDPNHHELIGLESAVVQETVSVLEEDFIPVPEQKLVQVQAETQVKQiEPEPASTAEPIGLFEASS 515
                          170       180
                   ....*....|....*....|....
gi 1907070835  662 EPTTPKKPEPTTPKEPEPTTPKEP 685
Cdd:PRK14960   516 AEFSLAQDTSAYDLVSEPVIEQQS 539
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
593-660 6.97e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 43.35  E-value: 6.97e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907070835  593 TTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 660
Cdd:TIGR00601   75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
665-730 7.15e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 43.35  E-value: 7.15e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070835  665 TPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTP 730
Cdd:TIGR00601   75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVP 140
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
640-712 7.35e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 43.52  E-value: 7.35e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907070835  640 TTPKEPEPTTPKEPEPTTPK-EPEPTTPKKPEPTTPKEPEPTTPKEPEPTtpkEPEPTTPKEPEPTTRKEPEPT 712
Cdd:PTZ00144   120 TGGAPPAAAPAAAAAAKAEKtTPEKPKAAAPTPEPPAASKPTPPAAAKPP---EPAPAAKPPPTPVARADPRET 190
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
401-514 7.53e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.55  E-value: 7.53e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  401 TRKEPEPTTP---KEPEPTTPKEPEPTTPKEPEPTTPkepePTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 477
Cdd:PRK14951   380 TPARPEAAAPaaaPVAQAAAAPAPAAAPAAAASAPAA----PPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQA 455
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070835  478 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 514
Cdd:PRK14951   456 APETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
601-666 7.53e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 43.35  E-value: 7.53e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070835  601 TRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 666
Cdd:TIGR00601   75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVP 140
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
525-598 7.98e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 43.73  E-value: 7.98e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907070835  525 PEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPE 598
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAA 111
PTZ00108 PTZ00108
DNA topoisomerase 2-like protein; Provisional
516-732 8.01e-04

DNA topoisomerase 2-like protein; Provisional


Pssm-ID: 240271 [Multi-domain]  Cd Length: 1388  Bit Score: 43.88  E-value: 8.01e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  516 EPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPePTTPKEPEPTTLKEPEPTTPKEPEPTTTK 595
Cdd:PTZ00108  1149 EKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNS-KRVDSDEKRKLDDKPDNKKSNSSGSDQED 1227
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  596 EPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTpkepepTTPKKPEPTTPK 675
Cdd:PTZ00108  1228 DEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPS------KRPDGESNGGSK 1301
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1907070835  676 EPEPTTPKEPEPTTPKEPEPTTPKEPEPTT-RKEPEPTTPKEPEPTTPKEPEPTTPKK 732
Cdd:PTZ00108  1302 PSSPTKKKVKKRLEGSLAALKKKKKSEKKTaRKKKSKTRVKQASASQSSRLLRRPRKK 1359
PRK10905 PRK10905
cell division protein DamX; Validated
448-555 8.26e-04

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 43.00  E-value: 8.26e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  448 TTPKEPEPTTPKEPEPTTPKepEPTTPKEPEPTTPKEPEPTT---PKEPEPTTPKEPEPT--TPKEPEPTTPKEPepttP 522
Cdd:PRK10905   122 TLPTEPATVAPVRNGNASRQ--TAKTQTAERPATTRPARKQAviePKKPQATAKTEPKPVaqTPKRTEPAAPVAS----T 195
                           90       100       110
                   ....*....|....*....|....*....|....
gi 1907070835  523 KEPEPTTPKEPEPTTLKEPEPT-TPKEPEPTTPK 555
Cdd:PRK10905   196 KAPAATSTPAPKETATTAPVQTaSPAQTTATPAA 229
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
342-530 8.76e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 43.33  E-value: 8.76e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  342 PVPTTPKEPEPTTPKEPPPTTKKPEPTTPKEPEPTTPKEPEPTTTKEPEPTTTKEPESTTRKEPEPTtpKEPEPTTPKEP 421
Cdd:PRK12323   381 PVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGA--PAPAPAPAAAP 458
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  422 EPTTP---KEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEP--TTPKEPEPTTPKEPEPTTPKEPEPT 496
Cdd:PRK12323   459 AAAARpaaAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPaqPDAAPAGWVAESIPDPATADPDDAF 538
                          170       180       190
                   ....*....|....*....|....*....|....*.
gi 1907070835  497 TPKEPEPTTPKEPEPTTPKEPE--PTTPKEPEPTTP 530
Cdd:PRK12323   539 ETLAPAPAAAPAPRAAAATEPVvaPRPPRASASGLP 574
PRK14960 PRK14960
DNA polymerase III subunit gamma/tau;
570-709 8.92e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237868 [Multi-domain]  Cd Length: 702  Bit Score: 43.50  E-value: 8.92e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  570 PKEPEPTTLKEP-EPTTPKEP--EPTTTKEPESTTRKEPEPTT----PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 642
Cdd:PRK14960   360 PLAPNEILVSEPvQQNGQAEVglNSQAQTAQEITPVSAVQPVEvisqPAMVEPEPEPEPEPEPEPEPEPEPEPEPEPEPE 439
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907070835  643 KEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK-EPEPTTRKEP 709
Cdd:PRK14960   440 PEPQPNQDLMVFDPNHHELIGLESAVVQETVSVLEEDFIPVPEQKLVQVQAETQVKQiEPEPASTAEP 507
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
533-612 8.99e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 43.73  E-value: 8.99e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  533 PEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKE 612
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
ZipA COG3115
Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome ...
416-539 9.28e-04

Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225657 [Multi-domain]  Cd Length: 324  Bit Score: 42.93  E-value: 9.28e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  416 TTPKEPEPTTPKEPEPTTPKEPE--PTTLKEPEPTTPKEPEPTTPKEPEPttPKEPEPTTPKEPEPttPKEPEPTTPkEP 493
Cdd:COG3115     68 RKNEAPQFTQEHEAARQSPQHQYqpEYASAQIKIPVPQPPQISDPPAHPQ--PTQPALDQEQPPEE--ARQPVLPQE-AP 142
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 1907070835  494 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLK 539
Cdd:COG3115    143 APQPVHSAAPQPAVQTVQPAVPEQQVQPEEVVEPAPEVKRPPRKDT 188
PTZ00108 PTZ00108
DNA topoisomerase 2-like protein; Provisional
460-687 9.32e-04

DNA topoisomerase 2-like protein; Provisional


Pssm-ID: 240271 [Multi-domain]  Cd Length: 1388  Bit Score: 43.50  E-value: 9.32e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  460 EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTpKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLK 539
Cdd:PTZ00108  1149 EKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASV-VGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQED 1227
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  540 EPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPE--STTRKEPEPTTPKEPEPTT 617
Cdd:PTZ00108  1228 DEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPppSKRPDGESNGGSKPSSPTK 1307
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  618 PKEPEPTTPKEPEPTTPKEPEPTT-PKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEP 687
Cdd:PTZ00108  1308 KKVKKRLEGSLAALKKKKKSEKKTaRKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSED 1378
PRK11633 PRK11633
cell division protein DedD; Provisional
413-522 9.96e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 41.91  E-value: 9.96e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  413 PEPTTPKEPEPTTPKEPepTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPepttpkEPEPTTPKEPEPTTPKE 492
Cdd:PRK11633    45 PKPGDRDEPDMMPAATQ--ALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEP------EPAPVEPPKPKPVEKPK 116
                           90       100       110
                   ....*....|....*....|....*....|
gi 1907070835  493 PEPTTPKEPEPttPKEPEPTTPKEPEPTTP 522
Cdd:PRK11633   117 PKPKPQQKVEA--PPAPKPEPKPVVEEKAA 144
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
637-709 1.17e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 42.75  E-value: 1.17e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907070835  637 PEPTTPKEPEPTTPKePEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEP 709
Cdd:PTZ00144   122 GAPPAAAPAAAAAAK-AEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRETRVP 193
ZipA COG3115
Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome ...
600-729 1.19e-03

Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225657 [Multi-domain]  Cd Length: 324  Bit Score: 42.55  E-value: 1.19e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  600 TTRKEPEPTTPKEPEPTTPKEPE--PTTPKEPEPTTPKEPEPTTPKEPEPttPKEPEPTTPKEPEPttPKKPepttpkeP 677
Cdd:COG3115     68 RKNEAPQFTQEHEAARQSPQHQYqpEYASAQIKIPVPQPPQISDPPAHPQ--PTQPALDQEQPPEE--ARQP-------V 136
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1907070835  678 EPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTT 729
Cdd:COG3115    137 LPQEAPAPQPVHSAAPQPAVQTVQPAVPEQQVQPEEVVEPAPEVKRPPRKDT 188
PRK10819 PRK10819
transport protein TonB; Provisional
645-765 1.20e-03

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 41.98  E-value: 1.20e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  645 PEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKE-PEPTTPKEPEPTTRKEPEpttPKEPEPTTPK 723
Cdd:PRK10819    42 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPvVIPKPEPKPKPKPKPKPK---PVKKVEEQPK 118
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1907070835  724 EPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQNKP 765
Cdd:PRK10819   119 REVKPVEPRPASPFENTAPARPTSSTATAAASKPVTSVSSGP 160
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
584-644 1.21e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 42.57  E-value: 1.21e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  584 TTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 644
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PRK10905 PRK10905
cell division protein DamX; Validated
448-570 1.21e-03

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 42.23  E-value: 1.21e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  448 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKepEPTTPKEPEPTTPKEPEPTT---PKEPEPTTPKEPEPT--TP 522
Cdd:PRK10905   106 TQPQNQQQLNNVAVNSTLPTEPATVAPVRNGNASRQ--TAKTQTAERPATTRPARKQAviePKKPQATAKTEPKPVaqTP 183
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1907070835  523 KEPEPTTPKEPEPTtlkePEPTTPKEPEPTTPKEPEPTTLKEPEPTTP 570
Cdd:PRK10905   184 KRTEPAAPVASTKA----PAATSTPAPKETATTAPVQTASPAQTTATP 227
PRK10905 PRK10905
cell division protein DamX; Validated
480-619 1.21e-03

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 42.23  E-value: 1.21e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  480 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPepTTPKEPEPTTPKEPEPTTLKEPepttpKEPEPTTPKEPEP 559
Cdd:PRK10905   106 TQPQNQQQLNNVAVNSTLPTEPATVAPVRNGNASRQTA--KTQTAERPATTRPARKQAVIEP-----KKPQATAKTEPKP 178
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  560 TtlkepePTTPKEPEPTTlkepEPTTPKEPEPTTTKEPESTTRKEPEPT-TPKEPEPTTPK 619
Cdd:PRK10905   179 V------AQTPKRTEPAA----PVASTKAPAATSTPAPKETATTAPVQTaSPAQTTATPAA 229
PRK10905 PRK10905
cell division protein DamX; Validated
472-600 1.21e-03

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 42.23  E-value: 1.21e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  472 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKepEPTTPKEPEPTTPKEPEPTT---PKEPEPTTLKEPEPT--TP 546
Cdd:PRK10905   106 TQPQNQQQLNNVAVNSTLPTEPATVAPVRNGNASRQ--TAKTQTAERPATTRPARKQAviePKKPQATAKTEPKPVaqTP 183
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1907070835  547 KEPEPTTPKEPEPTtlkePEPTTPKEPEPTTLKEPEPT-TPKEPEPTTTKEPEST 600
Cdd:PRK10905   184 KRTEPAAPVASTKA----PAATSTPAPKETATTAPVQTaSPAQTTATPAAGGKTA 234
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
596-699 1.22e-03

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 42.42  E-value: 1.22e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  596 EPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEpEPTTPKEPEPTTPKEPEPTTpkEPEPTTPKePEPTTPkkPEPTTPK 675
Cdd:PRK13335    69 RQERTPKLEKAPNTNEEKTSASKIEKISQPKQE-EQKSLNISATPAPKQEQSQT--TTESTTPK-TKVTTP--PSTNTPQ 142
                           90       100
                   ....*....|....*....|....*
gi 1907070835  676 EPEPTTPKEPE-PTTPKEPEPTTPK 699
Cdd:PRK13335   143 PMQSTKSDTPQsPTIKQAQTDMTPK 167
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
440-500 1.25e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 42.57  E-value: 1.25e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  440 TTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 500
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PRK10905 PRK10905
cell division protein DamX; Validated
408-523 1.28e-03

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 42.23  E-value: 1.28e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  408 TTPKEPEPTTP------KEPEPTTPKEPEPTTPKEPEPTTLKEPepttpKEPEPTTPKEPEPTtpkepePTTPKEPEPTT 481
Cdd:PRK10905   122 TLPTEPATVAPvrngnaSRQTAKTQTAERPATTRPARKQAVIEP-----KKPQATAKTEPKPV------AQTPKRTEPAA 190
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1907070835  482 PKEPepttPKEPEPTTPKEPEPTTPKEPEPT-TPKEPEPTTPK 523
Cdd:PRK10905   191 PVAS----TKAPAATSTPAPKETATTAPVQTaSPAQTTATPAA 229
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
616-676 1.29e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 42.57  E-value: 1.29e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  616 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKE 676
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
472-532 1.30e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 42.57  E-value: 1.30e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  472 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 532
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
448-508 1.30e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 42.57  E-value: 1.30e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  448 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 508
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
456-516 1.30e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 42.57  E-value: 1.30e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  456 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 516
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
464-524 1.30e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 42.57  E-value: 1.30e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  464 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 524
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PHA03247 PHA03247
large tegument protein UL36; Provisional
589-778 1.32e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.00  E-value: 1.32e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  589 PEPTTTKEPESTtrKEPEPTTPKEPEPTTPKEPEPTTPKEPEP---------TTPKEPEPTTPKEPEPTTPKEPEPTTPK 659
Cdd:PHA03247   255 PAPPPVVGEGAD--RAPETARGATGPPPPPEAAAPNGAAAPPDgvwgaalagAPLALPAPPDPPPPAPAGDAEEEDDEDG 332
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  660 EPEPTTP---------------KKPEPTTPKEPEPTTPKEPEP---TTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTT 721
Cdd:PHA03247   333 AMEVVSPlprprqhyplgfpkrRRPTWTPPSSLEDLSAGRHHPkraSLPTRKRRSARHAATPFARGPGGDDQTRPAAPVP 412
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070835  722 PKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQNKPEETTPASEDSDDS 778
Cdd:PHA03247   413 ASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDA 469
PHA03264 PHA03264
envelope glycoprotein D; Provisional
480-589 1.33e-03

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 42.68  E-value: 1.33e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  480 TTPKEPEPTTPKEPEPTtPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEP 559
Cdd:PHA03264   253 VVPPYFEESKGYEPPPA-PSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPGPPRPAPD 331
                           90       100       110
                   ....*....|....*....|....*....|
gi 1907070835  560 TTLKEPEPTTPKEPEPTtlkePEPTTPKEP 589
Cdd:PHA03264   332 ADRPEGWPSLEAITFPP----PTPATPAVP 357
PTZ00108 PTZ00108
DNA topoisomerase 2-like protein; Provisional
540-779 1.35e-03

DNA topoisomerase 2-like protein; Provisional


Pssm-ID: 240271 [Multi-domain]  Cd Length: 1388  Bit Score: 43.11  E-value: 1.35e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  540 EPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPK 619
Cdd:PTZ00108  1149 EKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDD 1228
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  620 EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEpepTTPKEPEPTTPKKPEPTTPKEPEPTTPKepepTTPKEPEPTTPK 699
Cdd:PTZ00108  1229 EEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFS---SDDLSKEGKPKNAPKRVSAVQYSPPPPS----KRPDGESNGGSK 1301
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  700 EPEPTTRKEPEPTTPKEPEPTTPKEPEPTTP--KKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQN-KPEET--TPASED 774
Cdd:PTZ00108  1302 PSSPTKKKVKKRLEGSLAALKKKKKSEKKTArkKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDdDDSEVddSEDEDD 1381

                   ....*
gi 1907070835  775 SDDSK 779
Cdd:PTZ00108  1382 EDDED 1386
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
557-640 1.46e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 42.96  E-value: 1.46e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  557 PEPTTLKEPEPTTPKEPEPTTlkEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPtTPKE 636
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAP--AAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAA-AAVE 114

                   ....
gi 1907070835  637 PEPT 640
Cdd:PRK12270   115 DEVT 118
ZipA COG3115
Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome ...
400-521 1.46e-03

Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225657 [Multi-domain]  Cd Length: 324  Bit Score: 42.16  E-value: 1.46e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  400 TTRKEPEPTTPKEPEPTTPKEPE--PTTPKEPEPTTPKEPEPTTLKEPEPttPKEPEPTTPKEPEPttPKEP-EPTTPKE 476
Cdd:COG3115     68 RKNEAPQFTQEHEAARQSPQHQYqpEYASAQIKIPVPQPPQISDPPAHPQ--PTQPALDQEQPPEE--ARQPvLPQEAPA 143
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 1907070835  477 PEPTTPKEPEPTTPkEPEPTTPK-EPEPTTPKEPEPTTPKEPEPTT 521
Cdd:COG3115    144 PQPVHSAAPQPAVQ-TVQPAVPEqQVQPEEVVEPAPEVKRPPRKDT 188
PHA03264 PHA03264
envelope glycoprotein D; Provisional
432-537 1.50e-03

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 42.30  E-value: 1.50e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  432 TTPKEPEPTTLKEPEPTtPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 511
Cdd:PHA03264   253 VVPPYFEESKGYEPPPA-PSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPGPPRPAPD 331
                           90       100
                   ....*....|....*....|....*..
gi 1907070835  512 TTPKEPEPTTPKEP-EPTTPKEPEPTT 537
Cdd:PHA03264   332 ADRPEGWPSLEAITfPPPTPATPAVPR 358
TonB COG0810
Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope ...
518-645 1.51e-03

Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 223880 [Multi-domain]  Cd Length: 244  Bit Score: 41.69  E-value: 1.51e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  518 EPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPttlkePEPTTPKEPEPTtlKEPEPTTPKEPEPTTTKEP 597
Cdd:COG0810     35 ELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETP-----PEPTPPKPKEKP--KPEKKPKKPKPKPKPKPKP 107
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1907070835  598 ESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 645
Cdd:COG0810    108 KPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASY 155
ZipA COG3115
Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome ...
472-601 1.56e-03

Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225657 [Multi-domain]  Cd Length: 324  Bit Score: 42.16  E-value: 1.56e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  472 TTPKEPEPTTPKEPEPTTPKEPE--PTTPKEPEPTTPKEPEPTTPKEPEPttPKEPEPTTPKEPEPttLKEPepttpkeP 549
Cdd:COG3115     68 RKNEAPQFTQEHEAARQSPQHQYqpEYASAQIKIPVPQPPQISDPPAHPQ--PTQPALDQEQPPEE--ARQP-------V 136
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1907070835  550 EPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTT 601
Cdd:COG3115    137 LPQEAPAPQPVHSAAPQPAVQTVQPAVPEQQVQPEEVVEPAPEVKRPPRKDT 188
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
404-502 1.58e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.39  E-value: 1.58e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  404 EPEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 482
Cdd:PRK14951   394 VAQAAAAPAPAAAPAAAaSAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVA 473
                           90       100
                   ....*....|....*....|
gi 1907070835  483 KEPEPTTPKEPEPTTPKEPE 502
Cdd:PRK14951   474 SAAPAPAAAPAAARLTPTEE 493
PRK12757 PRK12757
cell division protein FtsN; Provisional
438-518 1.61e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 41.57  E-value: 1.61e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  438 EPTTLKE-PE-PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 515
Cdd:PRK12757    98 QPTQLSEvPYnEQTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEA 177

                   ...
gi 1907070835  516 EPE 518
Cdd:PRK12757   178 EKE 180
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
424-484 1.72e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 42.19  E-value: 1.72e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  424 TTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 484
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
FtsN COG3087
Cell division protein FtsN [Cell cycle control, cell division, chromosome partitioning];
553-707 1.74e-03

Cell division protein FtsN [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225629 [Multi-domain]  Cd Length: 264  Bit Score: 41.75  E-value: 1.74e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  553 TPKEPEPTTLKEPEPTT---PKEPEPTTLKEPEPTTPKEPEPTTTKEpesTTRKEPEPTTPKEPEPTTPKEpeptTPKEP 629
Cdd:COG3087     37 THHKKAPIPFLSNQGTGsllPNKPEEVWSYIKALEDRQIGVPQPTEP---AAVKDAERLTPEQRQLLEQME----VDQKA 109
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  630 EPTTPKE--PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKK-PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTR 706
Cdd:COG3087    110 QPTQLGEqpEQARIEEQPRTQSQKAQSQATTVQTQPVKPKPrPEKPQPVAPAPAPEPVEKAPKAEAAPPPKPKAEDAAET 189

                   .
gi 1907070835  707 K 707
Cdd:COG3087    190 R 190
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
432-492 1.75e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 42.19  E-value: 1.75e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  432 TTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 492
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
TonB COG0810
Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope ...
510-652 1.78e-03

Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 223880 [Multi-domain]  Cd Length: 244  Bit Score: 41.31  E-value: 1.78e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  510 EPTTPKEPEPTTPKEPEPTTPKEPEPttlkepEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLK-EPEPTTPKE 588
Cdd:COG0810     35 ELVPLAVFLLAAKVLEAPTEEPQPEP------EPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKpKPKPKPKPK 108
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907070835  589 PEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 652
Cdd:COG0810    109 PKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLSGLRRAIRRAPRYPAQ 172
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
405-589 1.79e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 42.22  E-value: 1.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  405 PEPTTPKEPEPT----TPKEPEPTTPKEPEPTT---PKEPEPTTLKEPEPTTP--KEPEPTTPKEPEPTTPKEPEPTTPK 475
Cdd:PLN03209   388 PTPPSSSPASSKsvdaVAKPAEPDVVPSPGSASnvpEVEPAQVEAKKTRPLSPyaRYEDLKPPTSPSPTAPTGVSPSVSS 467
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  476 epEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTpkePEPTTPKEPEPTTLKEPEPTTPKEPEPTTPK 555
Cdd:PLN03209   468 --TSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPTS---PSPAAPVGKVAPSSTNEVVKVGNSAPPTALA 542
                          170       180       190
                   ....*....|....*....|....*....|....
gi 1907070835  556 EPEPTTLKEPEPTTPKePEPTTLKEPEPTTPKEP 589
Cdd:PLN03209   543 DEQHHAQPKPRPLSPY-TMYEDLKPPTSPTPSPV 575
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
416-476 1.87e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 41.80  E-value: 1.87e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  416 TTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 476
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PRK12757 PRK12757
cell division protein FtsN; Provisional
649-718 1.91e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 41.57  E-value: 1.91e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  649 TPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPE 718
Cdd:PRK12757   111 TPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKE 180
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
616-699 1.98e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 41.54  E-value: 1.98e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  616 TTPKEPEPTTPKEPEPTTPKEPEPTTpkepEPTTPKE-PEPTTPKEPEPTTPK-KPEPTTPKEPEPTTPKepEPTTPKEP 693
Cdd:PRK13042    23 TTTQAANATTPSSTKVEAPQSTPPST----KVEAPQSkPNATTPPSTKVEAPQqTPNATTPSSTKVETPQ--SPTTKQVP 96

                   ....*.
gi 1907070835  694 EPTTPK 699
Cdd:PRK13042    97 TEINPK 102
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
529-627 2.05e-03

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 41.65  E-value: 2.05e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  529 TPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTlkEPEPTTPKepePTTTKEPESTTRKEPEPT 608
Cdd:PRK13335    73 TPKLEKAPNTNEEKTSASKIEKISQPKQEEQKSLNISATPAPKQEQSQT--TTESTTPK---TKVTTPPSTNTPQPMQST 147
                           90       100
                   ....*....|....*....|
gi 1907070835  609 TPKEPE-PTTPKEPEPTTPK 627
Cdd:PRK13335   148 KSDTPQsPTIKQAQTDMTPK 167
rne PRK10811
ribonuclease E; Reviewed
607-772 2.13e-03

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 42.33  E-value: 2.13e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  607 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTpkEPEPTTPKEPEPTTPkkPEPTTPKEPEPTTPKEPE 686
Cdd:PRK10811   846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVAE--PQPEEVVVVETTHPEVIA 921
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  687 PTTPKEPEPTTPKE---PEPTTRkEPEPTTPKEPEPTTPKEPEPTT---PKKPEPTTTSPKTTTLKATTLAPKVTAPAEE 760
Cdd:PRK10811   922 APVTEQPQVITESDvavAQEVAE-HAEPVVEPQDETADIEEAAETAevvVAEPEVVAQPAAPVVAEVAAEVETVTAVEPE 1000
                          170
                   ....*....|..
gi 1907070835  761 IQNKPEETTPAS 772
Cdd:PRK10811  1001 VAPAQVPEATVE 1012
PRK11633 PRK11633
cell division protein DedD; Provisional
637-732 2.17e-03

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 40.76  E-value: 2.17e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  637 PEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPKKPEPTTPkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPK 715
Cdd:PRK11633    45 PKPGDRDEPDMMPAaTQALPTQPPEGAAEAVRAGDAAAP-SLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQ 123
                           90
                   ....*....|....*..
gi 1907070835  716 EPEPTTPKEPEPTTPKK 732
Cdd:PRK11633   124 KVEAPPAPKPEPKPVVE 140
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
613-685 2.42e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 41.59  E-value: 2.42e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907070835  613 PEPTTPKEPEPTTPKePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEP 685
Cdd:PTZ00144   122 GAPPAAAPAAAAAAK-AEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRETRVP 193
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
576-636 2.47e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 41.42  E-value: 2.47e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  576 TTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 636
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
464-532 2.48e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 41.59  E-value: 2.48e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  464 TTPKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 532
Cdd:PTZ00144   120 TGGAPPAAAPAAAAAAKAEKtTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
456-524 2.48e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 41.59  E-value: 2.48e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  456 TTPKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 524
Cdd:PTZ00144   120 TGGAPPAAAPAAAAAAKAEKtTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
448-516 2.48e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 41.59  E-value: 2.48e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  448 TTPKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 516
Cdd:PTZ00144   120 TGGAPPAAAPAAAAAAKAEKtTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
PHA03264 PHA03264
envelope glycoprotein D; Provisional
598-697 2.65e-03

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 41.53  E-value: 2.65e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  598 ESTTRKEPEPTtPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEP 677
Cdd:PHA03264   259 EESKGYEPPPA-PSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPGPPRPAPDADRPEG 337
                           90       100
                   ....*....|....*....|.
gi 1907070835  678 EPTTPKEP-EPTTPKEPEPTT 697
Cdd:PHA03264   338 WPSLEAITfPPPTPATPAVPR 358
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
471-892 2.75e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.90  E-value: 2.75e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  471 PTTPKEPEPTTPKEPEPTtPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP-KEPEPTTLKEPEPTTPKEP 549
Cdd:PRK07764   390 GAGAPAAAAPSAAAAAPA-AAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNApAGGAPSPPPAAAPSAQPAP 468
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  550 EPTTPkePEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTT-------------KEPESTTR-KEPEPTtPKEPEP 615
Cdd:PRK07764   469 APAAA--PEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATlrerwpeilaavpKRSRKTWAiLLPEAT-VLGVRG 545
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  616 TT----------------PKEPE--------------------PTTPKEPEPTTPKEPEPTTPKEPEPttpkepEPTTPK 659
Cdd:PRK07764   546 DTlvlgfstgglarrfasPGNAEvlvtalaeelggdwqveavvGPAPGAAGGEGPPAPASSGPPEEAA------RPAAPA 619
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  660 EPEPTTPKKPePTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKE-PEPTTPKKPEPTTT 738
Cdd:PRK07764   620 APAAPAAPAP-AGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPaPAPAAPAAPAGAAP 698
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  739 SPKTTTLKATTLAPKVTAPAEEIQNKPEETTPASEDSDDSkttlkpqkptkapkptkkptkapkkptstkkpktpktrkp 818
Cdd:PRK07764   699 AQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDP---------------------------------------- 738
                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907070835  819 kttpsplkttsatpelntTPLEVMLPTTTIPKQTPNPETAEVNPDHEDADGGEGEKPLIPGPPVLFPTAIPGTD 892
Cdd:PRK07764   739 ------------------VPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMD 794
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
416-507 2.79e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 41.16  E-value: 2.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  416 TTPKEPEPTTPKEPEPTTPKEPEPTTlkepeptTPKEPEPTtpkePEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKepE 494
Cdd:PRK13042    23 TTTQAANATTPSSTKVEAPQSTPPST-------KVEAPQSK----PNATTPPSTKVEAPQQtPNATTPSSTKVETPQ--S 89
                           90
                   ....*....|...
gi 1907070835  495 PTTPKEPEPTTPK 507
Cdd:PRK13042    90 PTTKQVPTEINPK 102
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
585-691 2.83e-03

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 41.27  E-value: 2.83e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  585 TPKEPEPTTTKEPESTTRKEpepTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTpkEPEPTTPKePEPTTPkePEPT 664
Cdd:PRK13335    68 TRQERTPKLEKAPNTNEEKT---SASKIEKISQPKQEEQKSLNISATPAPKQEQSQT--TTESTTPK-TKVTTP--PSTN 139
                           90       100
                   ....*....|....*....|....*...
gi 1907070835  665 TPKKPEPTTPKEPE-PTTPKEPEPTTPK 691
Cdd:PRK13335   140 TPQPMQSTKSDTPQsPTIKQAQTDMTPK 167
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
477-549 2.85e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 41.59  E-value: 2.85e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907070835  477 PEPTTPKEPEPTTPKePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEP 549
Cdd:PTZ00144   122 GAPPAAAPAAAAAAK-AEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRETRVP 193
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
640-700 2.86e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 41.42  E-value: 2.86e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  640 TTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 700
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
dnaA PRK14086
chromosomal replication initiator protein DnaA;
582-775 2.87e-03

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 41.73  E-value: 2.87e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  582 EPTTPKEPEPTTTKEPESTT--RKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEpepTTPKEPEPtTPKEPEPTTPK 659
Cdd:PRK14086    93 GEPAPPPPHARRTSEPELPRpgRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAY---QQRPEPGA-WPRAADDYGWQ 168
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  660 EPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRkePEPTTPKEPEPTTPkEPEPTTPKKPEPTTTS 739
Cdd:PRK14086   169 QQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPR--PDWDRPRRDRTDRP-EPPPGAGHVHRGGPGP 245
                          170       180       190
                   ....*....|....*....|....*....|....*.
gi 1907070835  740 PKTTTLKATTLAPKvtAPAEEIQNKPEETTPASEDS 775
Cdd:PRK14086   246 PERDDAPVVPIRPS--APGPLAAQPAPAPGPGEPTA 279
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
632-692 2.89e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 41.42  E-value: 2.89e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  632 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKE 692
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
597-680 2.90e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 41.59  E-value: 2.90e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  597 PESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPepttPKEPEPTTPKEPEPTTPKEPEPTtpkEPEPTTPKKPEPTTPKE 676
Cdd:PTZ00144   114 PLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPK----AAAPTPEPPAASKPTPPAAAKPP---EPAPAAKPPPTPVARAD 186

                   ....
gi 1907070835  677 PEPT 680
Cdd:PTZ00144   187 PRET 190
PRK01297 PRK01297
ATP-dependent RNA helicase RhlB; Provisional
607-670 2.91e-03

ATP-dependent RNA helicase RhlB; Provisional


Pssm-ID: 234938 [Multi-domain]  Cd Length: 475  Bit Score: 41.44  E-value: 2.91e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907070835  607 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPE 670
Cdd:PRK01297    13 EAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASLWKLE 76
dnaA PRK14086
chromosomal replication initiator protein DnaA;
508-712 2.92e-03

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 41.73  E-value: 2.92e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  508 EPEPTTPkepePTTPKEPEPTTPKEPEPTTLKEPEPttpkEPEPTTPKEPEPTTLKEPEPTTPKEPEPttlkePEPTT-P 586
Cdd:PRK14086    93 GEPAPPP----PHARRTSEPELPRPGRRPYEGYGGP----RADDRPPGLPRQDQLPTARPAYPAYQQR-----PEPGAwP 159
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  587 KEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTpkEPEPTTPKEPEPTTPkEPEPTTP 666
Cdd:PRK14086   160 RAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHP--RPDWDRPRRDRTDRP-EPPPGAG 236
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|
gi 1907070835  667 KKPEPTTPKEPEPTTPKEPE----PTTPKEPEPTTPKEPEPTTRKEPEPT 712
Cdd:PRK14086   237 HVHRGGPGPPERDDAPVVPIrpsaPGPLAAQPAPAPGPGEPTARLNPKYT 286
PRK11633 PRK11633
cell division protein DedD; Provisional
533-634 2.93e-03

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 40.37  E-value: 2.93e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  533 PEPTTLKEPEPTTP-KEPEPTTPKEPEPTTLKEPEPTTPkEPEPTTLkePEPTTPKEPEPTTTKEPESTTRKEPEPTTPK 611
Cdd:PRK11633    45 PKPGDRDEPDMMPAaTQALPTQPPEGAAEAVRAGDAAAP-SLDPATV--APPNTPVEPEPAPVEPPKPKPVEKPKPKPKP 121
                           90       100
                   ....*....|....*....|...
gi 1907070835  612 EPEPTTPKEPEPTTPKEPEPTTP 634
Cdd:PRK11633   122 QQKVEAPPAPKPEPKPVVEEKAA 144
PRK01297 PRK01297
ATP-dependent RNA helicase RhlB; Provisional
631-706 2.93e-03

ATP-dependent RNA helicase RhlB; Provisional


Pssm-ID: 234938 [Multi-domain]  Cd Length: 475  Bit Score: 41.44  E-value: 2.93e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070835  631 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTR 706
Cdd:PRK01297    13 EAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASLWKLEDFVVEPQEGKTR 88
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
540-651 2.95e-03

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 41.27  E-value: 2.95e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  540 EPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEpEPTTLKEPEPTTPKEPEPTTTkePESTTRKePEPTTPkepePTTPK 619
Cdd:PRK13335    69 RQERTPKLEKAPNTNEEKTSASKIEKISQPKQE-EQKSLNISATPAPKQEQSQTT--TESTTPK-TKVTTP----PSTNT 140
                           90       100       110
                   ....*....|....*....|....*....|..
gi 1907070835  620 EPEPTTPKEPEPTTpkepePTTPKEPEPTTPK 651
Cdd:PRK13335   141 PQPMQSTKSDTPQS-----PTIKQAQTDMTPK 167
PRK11633 PRK11633
cell division protein DedD; Provisional
437-535 3.01e-03

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 40.37  E-value: 3.01e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  437 PEPTTLKEPEPTTP-KEPEPTTPKEPEPTTPKEPEPTTPkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 515
Cdd:PRK11633    45 PKPGDRDEPDMMPAaTQALPTQPPEGAAEAVRAGDAAAP-SLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQ 123
                           90       100
                   ....*....|....*....|.
gi 1907070835  516 EPE-PTTPKePEPTTPKEPEP 535
Cdd:PRK11633   124 KVEaPPAPK-PEPKPVVEEKA 143
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
426-492 3.03e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 41.21  E-value: 3.03e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070835  426 PKEPEPTTPKEPEPTTlKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 492
Cdd:PTZ00144   124 PPAAAPAAAAAAKAEK-TTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
624-684 3.12e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 41.42  E-value: 3.12e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  624 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKE 684
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
616-688 3.24e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 41.21  E-value: 3.24e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907070835  616 TTPKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKkpePTTPKEPEPTTPKEPEPT 688
Cdd:PTZ00144   120 TGGAPPAAAPAAAAAAKAEKtTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPA---PAAKPPPTPVARADPRET 190
PRK01297 PRK01297
ATP-dependent RNA helicase RhlB; Provisional
615-678 3.28e-03

ATP-dependent RNA helicase RhlB; Provisional


Pssm-ID: 234938 [Multi-domain]  Cd Length: 475  Bit Score: 41.44  E-value: 3.28e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907070835  615 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPE 678
Cdd:PRK01297    13 EAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASLWKLE 76
PRK10905 PRK10905
cell division protein DamX; Validated
584-714 3.35e-03

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 41.08  E-value: 3.35e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  584 TTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPepTTPKEPEPTTPKEPEPTTPKEPEP--TTPKEPEpttpkEP 661
Cdd:PRK10905   106 TQPQNQQQLNNVAVNSTLPTEPATVAPVRNGNASRQTA--KTQTAERPATTRPARKQAVIEPKKpqATAKTEP-----KP 178
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1907070835  662 EPTTPKKPEPTTPKEPepttPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTP 714
Cdd:PRK10905   179 VAQTPKRTEPAAPVAS----TKAPAATSTPAPKETATTAPVQTASPAQTTATP 227
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
624-696 3.36e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 41.21  E-value: 3.36e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907070835  624 TTPKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPTTPKKPEPTtpkEPEPTTPKEPEPTTPKEPEPT 696
Cdd:PTZ00144   120 TGGAPPAAAPAAAAAAKAEKtTPEKPKAAAPTPEPPAASKPTPPAAAKPP---EPAPAAKPPPTPVARADPRET 190
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
598-775 3.41e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 41.63  E-value: 3.41e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  598 ESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPT--TPK 675
Cdd:PRK14949   633 EGDGKKSSADRKPKTPPSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVPDPYdrPPW 712
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  676 EPEPTTpkEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPkkpeptttspktttlkatTLAPKVT 755
Cdd:PRK14949   713 EEAPEV--ASANDGPNNAAEGNLSESVEDASNSELQAVEQQATHQPQVQAEAQSP------------------ASTTALT 772
                          170       180
                   ....*....|....*....|
gi 1907070835  756 APAEEIQNKPEETTPASEDS 775
Cdd:PRK14949   773 QTSSEVQDTELNLVLLSSGS 792
PRK12757 PRK12757
cell division protein FtsN; Provisional
633-706 3.41e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 40.41  E-value: 3.41e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907070835  633 TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTR 706
Cdd:PRK12757   111 TPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKEKEQR 184
PRK12757 PRK12757
cell division protein FtsN; Provisional
625-694 3.44e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 40.41  E-value: 3.44e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  625 TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPE 694
Cdd:PRK12757   111 TPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKE 180
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
399-491 3.45e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 40.77  E-value: 3.45e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  399 STTRKEPEPTTPKEPEPTTPKEPEPTT-PKEPEPTtpkepepttlkePEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKe 476
Cdd:PRK13042    22 TTTTQAANATTPSSTKVEAPQSTPPSTkVEAPQSK------------PNATTPPSTKVEAPQQtPNATTPSSTKVETPQ- 88
                           90
                   ....*....|....*
gi 1907070835  477 pEPTTPKEPEPTTPK 491
Cdd:PRK13042    89 -SPTTKQVPTEINPK 102
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
593-715 3.54e-03

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 40.88  E-value: 3.54e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  593 TTKEPESTTRKEPEPTTPKEPEPTTPKEpepTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTpkEPEPTTPKkPEPT 672
Cdd:PRK13335    60 SATTQAANTRQERTPKLEKAPNTNEEKT---SASKIEKISQPKQEEQKSLNISATPAPKQEQSQT--TTESTTPK-TKVT 133
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1907070835  673 TPkePEPTTPKEPEPTTPKEPEpttpkepEPTTRKEPEPTTPK 715
Cdd:PRK13335   134 TP--PSTNTPQPMQSTKSDTPQ-------SPTIKQAQTDMTPK 167
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
449-526 3.60e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 227665 [Multi-domain]  Cd Length: 931  Bit Score: 41.35  E-value: 3.60e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  449 TPKEPEPTTPKEPEPTT--PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 526
Cdd:COG5373     45 GPVAKAAEQMAAPEAAEaaPLPAAAESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFAA 124
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
457-534 3.60e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 227665 [Multi-domain]  Cd Length: 931  Bit Score: 41.35  E-value: 3.60e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  457 TPKEPEPTTPKEPEPTT--PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 534
Cdd:COG5373     45 GPVAKAAEQMAAPEAAEaaPLPAAAESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFAA 124
PRK01297 PRK01297
ATP-dependent RNA helicase RhlB; Provisional
623-686 3.64e-03

ATP-dependent RNA helicase RhlB; Provisional


Pssm-ID: 234938 [Multi-domain]  Cd Length: 475  Bit Score: 41.05  E-value: 3.64e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907070835  623 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPE 686
Cdd:PRK01297    13 EAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASLWKLE 76
ftsN TIGR02223
cell division protein FtsN; FtsN is a poorly conserved protein active in cell division in a ...
511-692 3.64e-03

cell division protein FtsN; FtsN is a poorly conserved protein active in cell division in a number of Proteobacteria. The N-terminal 30 residue region tends to by Lys/Arg-rich, and is followed by a membrane-spanning region. This is followed by an acidic low-complexity region of variable length and a well-conserved C-terminal domain of two tandem regions matched by pfam05036 (Sporulation related repeat), found in several cell division and sporulation proteins. The role of FtsN as a suppressor for other cell division mutations is poorly understood; it may involve cell wall hydrolysis. [Cellular processes, Cell division]


Pssm-ID: 274041 [Multi-domain]  Cd Length: 298  Bit Score: 40.83  E-value: 3.64e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  511 PTTPKEPePTTPKEPEPTTPKEPEPTTLKEPEPTTPKEpepttpkEPEPTTLKEPEPTTPKEP-EPTTLKEPEPTTPKEP 589
Cdd:TIGR02223   48 LTESKQA-NEPETLQPKNQTENGETAADLPPKPEERWS-------YIEELEAREVLINDPEEPsNGGGVEESAQLTAEQR 119
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  590 EPTTTKEPESTTRKEPEPTTPKEPEpTTPKEPEPTTPKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPTTPKK 668
Cdd:TIGR02223  120 QLLEQMQADMRAAEKVLATAPSEQT-VAVEARKQTAEKKPQKARTAEAQKTPVEtEKIASKVKEAKQKQKALPKQTAETQ 198
                          170       180
                   ....*....|....*....|....
gi 1907070835  669 PEPTTPKEPEPTTPKEPEPTTPKE 692
Cdd:TIGR02223  199 SNSKPIETAPKADKADKTKPKPKE 222
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
520-600 3.66e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 41.21  E-value: 3.66e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  520 TTPKEPEPTTPKEPEPttlkEPEPTTPKEPEPTTPKEPEPttlKEPEPTTPKEPEPTtlkEPEPTTPKEPEPTTTKEPES 599
Cdd:PTZ00144   120 TGGAPPAAAPAAAAAA----KAEKTTPEKPKAAAPTPEPP---AASKPTPPAAAKPP---EPAPAAKPPPTPVARADPRE 189

                   .
gi 1907070835  600 T 600
Cdd:PTZ00144   190 T 190
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
480-571 3.80e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 40.77  E-value: 3.80e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  480 TTPKEPEPTTPKEPEPTTPKEPEPTT-PKEPEPTtpkePEPTTPKEPEPTTPKEpepttlkEPEPTTPKEPEPTTPKepE 558
Cdd:PRK13042    23 TTTQAANATTPSSTKVEAPQSTPPSTkVEAPQSK----PNATTPPSTKVEAPQQ-------TPNATTPSSTKVETPQ--S 89
                           90
                   ....*....|...
gi 1907070835  559 PTTLKEPEPTTPK 571
Cdd:PRK13042    90 PTTKQVPTEINPK 102
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
488-548 3.98e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 41.03  E-value: 3.98e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  488 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKE 548
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PRK14960 PRK14960
DNA polymerase III subunit gamma/tau;
639-719 3.99e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237868 [Multi-domain]  Cd Length: 702  Bit Score: 41.19  E-value: 3.99e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  639 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTT----PKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTP 714
Cdd:PRK14960   360 PLAPNEILVSEPVQQNGQAEVGLNSQAQTAQEITPVSAVQPVEvisqPAMVEPEPEPEPEPEPEPEPEPEPEPEPEPEPE 439

                   ....*
gi 1907070835  715 KEPEP 719
Cdd:PRK14960   440 PEPQP 444
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
371-554 4.02e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.40  E-value: 4.02e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  371 KEPEPTTPKEPEPTTTKEPEPTTTKEPESTTRKEPEPTTPKEP--EPTTPKEPEPTTPKEPEPTTPKEPEPttlkePEPT 448
Cdd:PRK12323   398 APAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASarGPGGAPAPAPAPAAAPAAAARPAAAG-----PRPV 472
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  449 TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP--TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 526
Cdd:PRK12323   473 AAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPaqPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPR 552
                          170       180
                   ....*....|....*....|....*...
gi 1907070835  527 PTTPKEPEPTtlkepePTTPKEPEPTTP 554
Cdd:PRK12323   553 AAAATEPVVA------PRPPRASASGLP 574
PHA03169 PHA03169
hypothetical protein; Provisional
451-659 4.02e-03

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 41.11  E-value: 4.02e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  451 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK--EPEPT 528
Cdd:PHA03169    44 AKPAPPAPTTSGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASglSPENT 123
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  529 TPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTlKEPEPTTPKEPEPTTLKEPEPTTPKEPEPtttkEPESTTRKEPEPT 608
Cdd:PHA03169   124 SGSSPESPASHSPPPSPPSHPGPHEPAPPESHN-PSPNQQPSSFLQPSHEDSPEEPEPPTSEP----EPDSPGPPQSETP 198
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  609 TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 659
Cdd:PHA03169   199 TSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFPG 249
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
464-547 4.12e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 40.39  E-value: 4.12e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  464 TTPKEPEPTTPKEPEPTTPKEPEPTTpkepEPTTPKE-PEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKepEPTTLKEP 541
Cdd:PRK13042    23 TTTQAANATTPSSTKVEAPQSTPPST----KVEAPQSkPNATTPPSTKVEAPQQtPNATTPSSTKVETPQ--SPTTKQVP 96

                   ....*.
gi 1907070835  542 EPTTPK 547
Cdd:PRK13042    97 TEINPK 102
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
621-693 4.16e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.82  E-value: 4.16e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907070835  621 PEPTTPKEPEPTTPKePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEP 693
Cdd:PTZ00144   122 GAPPAAAPAAAAAAK-AEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRETRVP 193
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
580-683 4.21e-03

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 40.88  E-value: 4.21e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  580 EPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEpEPTTPKEPEPTTPKEPEP-TTPKEPEPTtpkePEPTTPkePEPTTP 658
Cdd:PRK13335    69 RQERTPKLEKAPNTNEEKTSASKIEKISQPKQE-EQKSLNISATPAPKQEQSqTTTESTTPK----TKVTTP--PSTNTP 141
                           90       100
                   ....*....|....*....|....*.
gi 1907070835  659 KEPEPTTPKKPE-PTTPKEPEPTTPK 683
Cdd:PRK13335   142 QPMQSTKSDTPQsPTIKQAQTDMTPK 167
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
465-548 4.23e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 227665 [Multi-domain]  Cd Length: 931  Bit Score: 41.35  E-value: 4.23e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  465 TPKEPEPTTPKEPEPTT--PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPeptTLKEPE 542
Cdd:COG5373     45 GPVAKAAEQMAAPEAAEaaPLPAAAESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAAPAPAEPVEP---SLAANP 121

                   ....*.
gi 1907070835  543 PTTPKE 548
Cdd:COG5373    122 FAAAIE 127
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
449-547 4.25e-03

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 40.88  E-value: 4.25e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  449 TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTpkEPEPTTPKePEPTTPkePEPTTPKEPEPT 528
Cdd:PRK13335    73 TPKLEKAPNTNEEKTSASKIEKISQPKQEEQKSLNISATPAPKQEQSQT--TTESTTPK-TKVTTP--PSTNTPQPMQST 147
                           90       100
                   ....*....|....*....|
gi 1907070835  529 TPKEPEPTTLKEPEP-TTPK 547
Cdd:PRK13335   148 KSDTPQSPTIKQAQTdMTPK 167
PHA03169 PHA03169
hypothetical protein; Provisional
404-531 4.31e-03

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 40.72  E-value: 4.31e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  404 EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTlKEPEPTTPKEPEPTTPKEPEPTTP--KEPEPTTPKEPEPTT 481
Cdd:PHA03169   119 SPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHN-PSPNQQPSSFLQPSHEDSPEEPEPptSEPEPDSPGPPQSET 197
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1907070835  482 PKEPEPTTPKEPEPTTPKEPEPTTPKEPE--PTTPKEPEPTTPKEPEPTTPK 531
Cdd:PHA03169   198 PTSSPPPQSPPDEPGEPQSPTPQQAPSPNtqQAVEHEDEPTEPEREGPPFPG 249
PHA03264 PHA03264
envelope glycoprotein D; Provisional
544-649 4.45e-03

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 40.76  E-value: 4.45e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  544 TTPKEPEPTTPKEPEPTTlKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEP 623
Cdd:PHA03264   253 VVPPYFEESKGYEPPPAP-SGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPGPPRPAPD 331
                           90       100
                   ....*....|....*....|....*..
gi 1907070835  624 TTPKEPEPTTPKEP-EPTTPKEPEPTT 649
Cdd:PHA03264   332 ADRPEGWPSLEAITfPPPTPATPAVPR 358
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
399-460 4.57e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 40.65  E-value: 4.57e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907070835  399 STTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKE 460
Cdd:TIGR00601   81 TGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
591-758 4.62e-03

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 40.73  E-value: 4.62e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  591 PTTTKEPESTTRKEPEPTTPKEPEPTT-PKEPEPTTPKEPEPTTPKEP-EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKK 668
Cdd:PRK13108   276 PKGREAPGALRGSEYVVDEALEREPAElAAAAVASAASAVGPVGPGEPnQPDDVAEAVKAEVAEVTDEVAAESVVQVADR 355
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  669 PEPTTPKePEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPE-PTTPKEPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKA 747
Cdd:PRK13108   356 DGESTPA-VEETSEADIEREQPGDLAGQAPAAHQVDAEAASAaPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAV 434
                          170
                   ....*....|.
gi 1907070835  748 TTLAPKVTAPA 758
Cdd:PRK13108   435 AGPGDDPAEPD 445
PRK12757 PRK12757
cell division protein FtsN; Provisional
465-534 4.66e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 40.03  E-value: 4.66e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  465 TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 534
Cdd:PRK12757   111 TPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKE 180
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
633-716 4.89e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 227665 [Multi-domain]  Cd Length: 931  Bit Score: 40.96  E-value: 4.89e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  633 TPKEPEPTTPKEPEPTT--PKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPeptTRKEPE 710
Cdd:COG5373     45 GPVAKAAEQMAAPEAAEaaPLPAAAESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAAPAPAEPVEP---SLAANP 121

                   ....*.
gi 1907070835  711 PTTPKE 716
Cdd:COG5373    122 FAAAIE 127
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
584-652 5.03e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.82  E-value: 5.03e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  584 TTPKEP-EPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 652
Cdd:PTZ00144   120 TGGAPPaAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
NESP55 pfam06390
Neuroendocrine-specific golgi protein P55 (NESP55); This family consists of several mammalian ...
404-519 5.31e-03

Neuroendocrine-specific golgi protein P55 (NESP55); This family consists of several mammalian neuroendocrine-specific golgi protein P55 (NESP55) sequences. NESP55 is a novel member of the chromogranin family and is a soluble, acidic, heat-stable secretory protein that is expressed exclusively in endocrine and nervous tissues, although less widely than chromogranins.


Pssm-ID: 115071 [Multi-domain]  Cd Length: 261  Bit Score: 40.23  E-value: 5.31e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  404 EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 483
Cdd:pfam06390  139 EPDTAPTTEPETEPEDEPGPVVPKGATFHQSLTERLHALKLQSADASPRRAPPSTQEPESAREGEEPERGPLDKDPRDPE 218
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070835  484 E-PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 519
Cdd:pfam06390  219 EeEEEKEEEKQQPHRCKPKKPARRRDPSPESPPKKGA 255
PRK01297 PRK01297
ATP-dependent RNA helicase RhlB; Provisional
471-545 5.44e-03

ATP-dependent RNA helicase RhlB; Provisional


Pssm-ID: 234938 [Multi-domain]  Cd Length: 475  Bit Score: 40.67  E-value: 5.44e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907070835  471 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTT 545
Cdd:PRK01297    13 EAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASLWKLEDFVVEPQEGKT 87
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
685-783 5.49e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 41.03  E-value: 5.49e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  685 PEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPKKpeptttspkttTLKATTLAPKVTAPAEeiqnK 764
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPK-----------PAAAAAAAAAPAAPPA----A 102
                           90
                   ....*....|....*....
gi 1907070835  765 PEETTPASEDSDDSKTTLK 783
Cdd:PRK12270   103 AAAAAPAAAAVEDEVTPLR 121
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
653-766 5.49e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.85  E-value: 5.49e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  653 PEPTTPKEPEPTTP-KKPEPTTPKEPEPTTP---KEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPT 728
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQAAAAPAPAAApaaAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQA 455
                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1907070835  729 TPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQNKPE 766
Cdd:PRK14951   456 APETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
441-506 5.53e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.44  E-value: 5.53e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070835  441 TLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKePEPTTPKEPEPTTPKEPEPTTP 506
Cdd:PTZ00144   117 EIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASK-PTPPAAAKPPEPAPAAKPPPTP 181
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
512-572 5.72e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 40.26  E-value: 5.72e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  512 TTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKE 572
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
469-544 5.88e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.44  E-value: 5.88e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070835  469 PEPTTPKEPEPTTPKePEPTTPKEPEPTTPKEPEPTTPkepeptTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPT 544
Cdd:PTZ00144   122 GAPPAAAPAAAAAAK-AEKTTPEKPKAAAPTPEPPAAS------KPTPPAAAKPPEPAPAAKPPPTPVARADPRET 190
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
528-588 5.97e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 40.26  E-value: 5.97e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  528 TTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKE 588
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
464-737 6.09e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 436069 [Multi-domain]  Cd Length: 480  Bit Score: 40.67  E-value: 6.09e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  464 TTPKEPEPTTPKEPEPTTPKEPE--PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTlkep 541
Cdd:pfam17823   86 HTPHGTDLSEPATREGAADGAASraLAAAASSSPSSAAQSAPTTIAGLPSLASSAPMAAAPRTNAASNAPTAAASS---- 161
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  542 epTTPKEPEPTTPKEPEPTTLKepePTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEP 621
Cdd:pfam17823  162 --TAAASGAPTTAASSAPATLT---PASGISTAATATGHPAAGTALAAVGNSSPAAGTVTAAVGTVTPAALATLAAAAGT 236
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  622 EPTTPKEPEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKEPEPTTPKkpepTTPKEPEPTTPKEPEPT-TPKEPEPTTPK 699
Cdd:pfam17823  237 VASAAGTINTGDPHARRLSPAKHmPSDTSARNPAAPSGAQAQGLIIQ----VSTDQPVHNTAGEPTPSpSNTTLEPNTPK 312
                          250       260       270
                   ....*....|....*....|....*....|....*...
gi 1907070835  700 EPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTT 737
Cdd:pfam17823  313 SVASTNLAVVTTTKAQAKEPSASPVPVLHTSMIPEVEA 350
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
631-774 6.26e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 40.63  E-value: 6.26e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  631 PTTPKEPEPTTPKEPEPTTPKEPEPTTPkepEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPE 710
Cdd:PRK12323   375 ATAAAAPVAQPAPAAAAPAAAAPAPAAP---PAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907070835  711 PTTPKEPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQNKPEETTPASED 774
Cdd:PRK12323   452 PAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPD 515
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
530-685 6.33e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 40.86  E-value: 6.33e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  530 PKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTT 609
Cdd:PRK14949   637 KKSSADRKPKTPPSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVPDPYDRPPWEEAP 716
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070835  610 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTpkEPEPTtpkePEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEP 685
Cdd:PRK14949   717 EVASANDGPNNAAEGNLSESVEDASNSELQAV--EQQAT----HQPQVQAEAQSPASTTALTQTSSEVQDTELNLV 786
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
637-760 6.35e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.47  E-value: 6.35e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  637 PEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPkkPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPK 715
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPA 453
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1907070835  716 EPEPTTPKEPEPTTPkkpepTTTSPKTTTLKATTLAPKVTAPAEE 760
Cdd:PRK14951   454 QAAPETVAIPVRVAP-----EPAVASAAPAPAAAPAAARLTPTEE 493
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
432-500 6.41e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.44  E-value: 6.41e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  432 TTPKEPEPTTLKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 500
Cdd:PTZ00144   120 TGGAPPAAAPAAAAAAKAEKtTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
425-510 6.52e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 227665 [Multi-domain]  Cd Length: 931  Bit Score: 40.58  E-value: 6.52e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  425 TPKEPEPTTPKEPEpttLKEPEPTTPKEPEPTTPKEPEPTTPkepEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPT 504
Cdd:COG5373     45 GPVAKAAEQMAAPE---AAEAAPLPAAAESIASPEVPPPVPP---APAQEGEAPAAEQPSAVPAPSAAPAPAEPVEPSLA 118

                   ....*.
gi 1907070835  505 TPKEPE 510
Cdd:COG5373    119 ANPFAA 124
PHA03264 PHA03264
envelope glycoprotein D; Provisional
407-497 6.67e-03

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 40.37  E-value: 6.67e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  407 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP- 485
Cdd:PHA03264   267 PPAPSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPGPPRPAPDADRPEGWPSLEAITf 346
                           90
                   ....*....|..
gi 1907070835  486 EPTTPKEPEPTT 497
Cdd:PHA03264   347 PPPTPATPAVPR 358
COG3889 COG3889
Predicted periplasmic protein [Function unknown];
527-676 6.83e-03

Predicted periplasmic protein [Function unknown];


Pssm-ID: 226406 [Multi-domain]  Cd Length: 872  Bit Score: 40.62  E-value: 6.83e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  527 PTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPE 606
Cdd:COG3889    694 PPVGWLPYTNSLYKATTLSSEAKNPDTVKIGQALTVYGSLEVFPAGENWGFIPTTKRVKVRIMDPASGTGTSITTSGTFT 773
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  607 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKE 676
Cdd:COG3889    774 AEVPQSPTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSSPSPTQTTSPTQTSTSTTTTTSPSQ 843
PHA03308 PHA03308
transcriptional regulator ICP4; Provisional
590-698 6.85e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 165563 [Multi-domain]  Cd Length: 1463  Bit Score: 40.56  E-value: 6.85e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  590 EPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE-----PEPTTPKE-------PEPTT 657
Cdd:PHA03308   750 EPSAAQESPANPWPRAPPCDEQEPLSVSPYGPEPDRPPDDDFETRKGLKRKSSEDhadpiPEGNATKKtcglqglPDSLP 829
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1907070835  658 PKEPEPTTPKKPEPTTPKEPE-PTTPKEPEPTTPKEP-EPTTP 698
Cdd:PHA03308   830 PAVPETDRDNPLLPPCPITPEgPPCPPREEPQQPQEPqEPQSP 872
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
444-508 7.04e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.05  E-value: 7.04e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070835  444 EPEPTTPKEPE--PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 508
Cdd:PTZ00144   123 APPAAAPAAAAaaKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
PHA03169 PHA03169
hypothetical protein; Provisional
443-651 7.05e-03

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 40.34  E-value: 7.05e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  443 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 522
Cdd:PHA03169    44 AKPAPPAPTTSGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENT 123
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  523 KEPEPTTPKEPEPTtlkEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTR 602
Cdd:PHA03169   124 SGSSPESPASHSPP---PSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTS 200
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*....
gi 1907070835  603 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 651
Cdd:PHA03169   201 SPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFPG 249
PRK14960 PRK14960
DNA polymerase III subunit gamma/tau;
479-645 7.23e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237868 [Multi-domain]  Cd Length: 702  Bit Score: 40.42  E-value: 7.23e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  479 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT----PKEPEPTTPKEPEPTTLKEPEPttpkEPEPTTP 554
Cdd:PRK14960   360 PLAPNEILVSEPVQQNGQAEVGLNSQAQTAQEITPVSAVQPVEvisqPAMVEPEPEPEPEPEPEPEPEP----EPEPEPE 435
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  555 KEPEPttlkEPEPT------TPKEPEPTTLKEP----------EPTTPKEPEPTTTKEPESTTRK-EPEPTTPKEPEPTT 617
Cdd:PRK14960   436 PEPEP----EPQPNqdlmvfDPNHHELIGLESAvvqetvsvleEDFIPVPEQKLVQVQAETQVKQiEPEPASTAEPIGLF 511
                          170       180
                   ....*....|....*....|....*...
gi 1907070835  618 PKEPEPTTPKEPEPTTPKEPEPTTPKEP 645
Cdd:PRK14960   512 EASSAEFSLAQDTSAYDLVSEPVIEQQS 539
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
418-484 7.29e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.05  E-value: 7.29e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070835  418 PKEPEPTTPKEPEPTTPKEPEPTTlKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 484
Cdd:PTZ00144   124 PPAAAPAAAAAAKAEKTTPEKPKA-AAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
522-669 7.44e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 40.48  E-value: 7.44e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  522 PKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTT 601
Cdd:PRK14949   637 KKSSADRKPKTPPSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVPDPYDRPPWEEAP 716
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  602 RKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP--EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKP 669
Cdd:PRK14949   717 EVASANDGPNNAAEGNLSESVEDASNSELQAVEQQAthQPQVQAEAQSPASTTALTQTSSEVQDTELNLV 786
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
480-537 7.48e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 39.88  E-value: 7.48e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1907070835  480 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 537
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSV 139
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
509-584 7.55e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.05  E-value: 7.55e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070835  509 PEPTTPKEPEPTTPKePEPTTPKEPEPttlKEPEPTTPKEPEPTTPKEPEPTtlkEPEPTTPKEPEPTTLKEPEPT 584
Cdd:PTZ00144   122 GAPPAAAPAAAAAAK-AEKTTPEKPKA---AAPTPEPPAASKPTPPAAAKPP---EPAPAAKPPPTPVARADPRET 190
ZipA COG3115
Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome ...
512-641 7.56e-03

Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225657 [Multi-domain]  Cd Length: 324  Bit Score: 39.85  E-value: 7.56e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  512 TTPKEPEPTTPKEPEPTTPKEPE--PTTLKEPEPTTPKEPEPTTPKEPEPTTLkePEPTTPKEPEpttlkepEPTTPKEP 589
Cdd:COG3115     68 RKNEAPQFTQEHEAARQSPQHQYqpEYASAQIKIPVPQPPQISDPPAHPQPTQ--PALDQEQPPE-------EARQPVLP 138
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1907070835  590 epttTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 641
Cdd:COG3115    139 ----QEAPAPQPVHSAAPQPAVQTVQPAVPEQQVQPEEVVEPAPEVKRPPRK 186
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
496-556 7.61e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 39.88  E-value: 7.61e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  496 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKE 556
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PRK10905 PRK10905
cell division protein DamX; Validated
496-635 7.80e-03

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 39.92  E-value: 7.80e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  496 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPepTTLKEPEPTTPKEPEPTTPKEPepttlKEPEPTTPKEPEP 575
Cdd:PRK10905   106 TQPQNQQQLNNVAVNSTLPTEPATVAPVRNGNASRQTA--KTQTAERPATTRPARKQAVIEP-----KKPQATAKTEPKP 178
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  576 TtlkepePTTPKEPEPTTTKEPESTtrkePEPTTPKEPEPTTPKEPEPT-TPKEPEPTTPK 635
Cdd:PRK10905   179 V------AQTPKRTEPAAPVASTKA----PAATSTPAPKETATTAPVQTaSPAQTTATPAA 229
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
420-523 7.87e-03

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 40.11  E-value: 7.87e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  420 EPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEpEPTTPKEPEPTTPKEPEPTTpkEPEPTTPKepePTTPKEPEPTTPK 499
Cdd:PRK13335    69 RQERTPKLEKAPNTNEEKTSASKIEKISQPKQE-EQKSLNISATPAPKQEQSQT--TTESTTPK---TKVTTPPSTNTPQ 142
                           90       100
                   ....*....|....*....|....*
gi 1907070835  500 EPEPTTPKEPE-PTTPKEPEPTTPK 523
Cdd:PRK13335   143 PMQSTKSDTPQsPTIKQAQTDMTPK 167
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
445-518 7.93e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 227665 [Multi-domain]  Cd Length: 931  Bit Score: 40.58  E-value: 7.93e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070835  445 PEPTTPKEPEPTT--PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 518
Cdd:COG5373     49 KAAEQMAAPEAAEaaPLPAAAESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFAA 124
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
504-561 8.37e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 39.88  E-value: 8.37e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1907070835  504 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTT 561
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSV 139
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
577-642 8.44e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.05  E-value: 8.44e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070835  577 TLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKePEPTTPKEPEPTTPKEPEPTTP 642
Cdd:PTZ00144   117 EIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASK-PTPPAAAKPPEPAPAAKPPPTP 181
PRK10905 PRK10905
cell division protein DamX; Validated
590-699 8.74e-03

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 39.54  E-value: 8.74e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  590 EPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEP--TTPKEPEpttpkEPEPTTPKEPEPTTPKEPepttPK 667
Cdd:PRK10905   126 EPATVAPVRNGNASRQTAKTQTAERPATTRPARKQAVIEPKKpqATAKTEP-----KPVAQTPKRTEPAAPVAS----TK 196
                           90       100       110
                   ....*....|....*....|....*....|...
gi 1907070835  668 KPEPTTPKEPEPTTPKEPEPT-TPKEPEPTTPK 699
Cdd:PRK10905   197 APAATSTPAPKETATTAPVQTaSPAQTTATPAA 229
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
656-716 9.05e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 39.88  E-value: 9.05e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  656 TTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKE 716
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PRK11633 PRK11633
cell division protein DedD; Provisional
477-584 9.08e-03

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 39.22  E-value: 9.08e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  477 PEPTTPKEPEPTTPKEPepTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPttpkEPEPTTPKE 556
Cdd:PRK11633    45 PKPGDRDEPDMMPAATQ--ALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKP----KPVEKPKPK 118
                           90       100
                   ....*....|....*....|....*...
gi 1907070835  557 PEPTTLKEPEPTTPKEPEPTTLKEPEPT 584
Cdd:PRK11633   119 PKPQQKVEAPPAPKPEPKPVVEEKAAPT 146
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
556-659 9.28e-03

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 39.72  E-value: 9.28e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  556 EPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTtpkePEPTTPkePEPTTPK 635
Cdd:PRK13335    69 RQERTPKLEKAPNTNEEKTSASKIEKISQPKQEEQKSLNISATPAPKQEQSQTTTESTTPK----TKVTTP--PSTNTPQ 142
                           90       100
                   ....*....|....*....|....*
gi 1907070835  636 EPEPTTPKEPE-PTTPKEPEPTTPK 659
Cdd:PRK13335   143 PMQSTKSDTPQsPTIKQAQTDMTPK 167
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
552-612 9.45e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 39.88  E-value: 9.45e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070835  552 TTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKE 612
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PRK12757 PRK12757
cell division protein FtsN; Provisional
481-550 9.60e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 39.26  E-value: 9.60e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  481 TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPE 550
Cdd:PRK12757   111 TPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKE 180
PHA03264 PHA03264
envelope glycoprotein D; Provisional
568-673 9.92e-03

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 39.60  E-value: 9.92e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070835  568 TTPKEPEPTTLKEPEPTtPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 647
Cdd:PHA03264   253 VVPPYFEESKGYEPPPA-PSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPGPPRPAPD 331
                           90       100
                   ....*....|....*....|....*..
gi 1907070835  648 TTPKEPEPTTPKEP-EPTTPKKPEPTT 673
Cdd:PHA03264   332 ADRPEGWPSLEAITfPPPTPATPAVPR 358
PRK01297 PRK01297
ATP-dependent RNA helicase RhlB; Provisional
463-526 9.92e-03

ATP-dependent RNA helicase RhlB; Provisional


Pssm-ID: 234938 [Multi-domain]  Cd Length: 475  Bit Score: 39.90  E-value: 9.92e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907070835  463 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 526
Cdd:PRK01297    13 EAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASLWKLE 76
PRK01297 PRK01297
ATP-dependent RNA helicase RhlB; Provisional
455-518 9.92e-03

ATP-dependent RNA helicase RhlB; Provisional


Pssm-ID: 234938 [Multi-domain]  Cd Length: 475  Bit Score: 39.90  E-value: 9.92e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907070835  455 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 518
Cdd:PRK01297    13 EAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASLWKLE 76
PRK01297 PRK01297
ATP-dependent RNA helicase RhlB; Provisional
447-510 9.92e-03

ATP-dependent RNA helicase RhlB; Provisional


Pssm-ID: 234938 [Multi-domain]  Cd Length: 475  Bit Score: 39.90  E-value: 9.92e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907070835  447 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 510
Cdd:PRK01297    13 EAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASLWKLE 76
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
452-520 9.94e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 39.67  E-value: 9.94e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070835  452 EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPtTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPT 520
Cdd:PTZ00144   123 APPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAAS-KPTPPAAAKPPEPAPAAKPPPTPVARADPRET 190
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
460-528 9.94e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 39.67  E-value: 9.94e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070835  460 EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPtTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPT 528
Cdd:PTZ00144   123 APPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAAS-KPTPPAAAKPPEPAPAAKPPPTPVARADPRET 190
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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