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Conserved domains on  [gi|1907070847|ref|XP_036010444|]
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proteoglycan 4 isoform X11 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
HX cd00094
Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. ...
830-1091 1.75e-39

Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.


:

Pssm-ID: 238046 [Multi-domain]  Cd Length: 194  Bit Score: 145.15  E-value: 1.75e-39
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  830 TNLCNGKPVDGLTTLRnGTLVAFRGHYFWMLNPFRPPSPPRRITEVW-GIPSPIDTVFTRCNcEGKTFFFKDSQYWRFTN 908
Cdd:cd00094      1 PDACDPLSFDAVTTLR-GELYFFKGRYFWRLSPGKPPGSPFLISSFWpSLPSPVDAAFERPD-TGKIYFFKGDKYWVYTG 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  909 DVVDPGYPKQIVK-GFGGLTGKIVAALSIAkykdRPESVYFFKrGGNIQQYTYKQEPMKKCTGRRPAinysvygeaaqvr 987
Cdd:cd00094     79 KNLEPGYPKPISDlGFPPTVKQIDAALRWP----DNGKTYFFK-GDKYWRYDEKTQKMDPGYPKLIE------------- 140
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  988 rrrferavgpfqthtfrihysvpmrvsyqdkgflhnevkvsTMWRGFPNVVTSAitlpnIRKPDGYdYYAFSKDQYYNID 1067
Cdd:cd00094    141 -----------------------------------------TDFPGVPDKVDAA-----FRWLDGY-YYFFKGDQYWRFD 173
                          250       260
                   ....*....|....*....|....
gi 1907070847 1068 VPTRTARAITTRSGqtlSKIWYNC 1091
Cdd:cd00094    174 PRSKEVRVGYPLKI---SSDWLGC 194
PHA03247 super family cl33720
large tegument protein UL36; Provisional
317-632 7.13e-24

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 109.64  E-value: 7.13e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  317 STTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTtpkePEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKePEPTTPKEPE 396
Cdd:PHA03247  2678 SPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPA----PHALVSATPLPPGPAAARQASPALPAAPAPP-AVPAGPATPG 2752
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  397 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPePTTLKEPEPTTPKEPEPTTPKEPE 476
Cdd:PHA03247  2753 GPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADP-PAAVLAPAAALPPAASPAGPLPPP 2831
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  477 PTTLKEPEPTTPKEPEPTT-----------LKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPttPK 545
Cdd:PHA03247  2832 TSAQPTAPPPPPGPPPPSLplggsvapggdVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPER--PP 2909
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  546 EPEPTTPKEPEPTTPKEPEPTtpkePEPTTPKEPEPTTPKKPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPT-T 623
Cdd:PHA03247  2910 QPQAPPPPQPQPQPPPPPQPQ----PPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQpWLGALVPGRVAVPRFRVPQPApS 2985

                   ....*....
gi 1907070847  624 RKEPEPTTP 632
Cdd:PHA03247  2986 REAPASSTP 2994
SO smart00201
Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from ...
25-65 1.36e-17

Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from vitronectin, that is a growth hormone-dependent serum factor with protease-inhibiting activity.


:

Pssm-ID: 197571  Cd Length: 43  Bit Score: 77.03  E-value: 1.36e-17
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 1907070847    25 QELSCKGRCFESFARGRECDCDSQCKQYGKCCADYDSFCEE 65
Cdd:smart00201    1 AIGSCKGRCGESFNEGNACRCDALCLSYGDCCTDYESVCKK 41
PTZ00449 super family cl33186
104 kDa microneme/rhoptry antigen; Provisional
505-809 6.06e-06

104 kDa microneme/rhoptry antigen; Provisional


The actual alignment was detected with superfamily member PTZ00449:

Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 50.46  E-value: 6.06e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  505 KEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKEPE-- 580
Cdd:PTZ00449   493 KKKLAPIEEEDSDKHDEPPEGPEASGLPPKAPGDKEGEEGeHEDSKESDEPKEGGKPGEtKEGEVGKKPGPAKEHKPSki 572
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  581 PTTPKKPEptTPKEPE-PTTPKEP-EPTTPKEPE-PTTPKEPepttrKEPE----PTTPKEPE-PTTPKEPEPTTPKKPE 652
Cdd:PTZ00449   573 PTLSKKPE--FPKDPKhPKDPEEPkKPKRPRSAQrPTRPKSP-----KLPElldiPKSPKRPEsPKSPKRPPPPQRPSSP 645
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  653 PTTTSPKTTTLKATTLAPKVTAPAEEIQNKPEETTPASEDSDDSKTTLKPQKPTKAPKPTKKPTKAPKKPTSTKKPKTPK 732
Cdd:PTZ00449   646 ERPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKL 725
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  733 TRKPKTTPSPLKTTSATP----ELNTTPLEVMLPTTTIPKQTPNPE--TAEVNPDHEDADGGEGEKPLI-PGPPVLFPTA 805
Cdd:PTZ00449   726 PRDEEFPFEPIGDPDAEQpddiEFFTPPEEERTFFHETPADTPLPDilAEEFKEEDIHAETGEPDEAMKrPDSPSEHEDK 805

                   ....
gi 1907070847  806 IPGT 809
Cdd:PTZ00449   806 PPGD 809
 
Name Accession Description Interval E-value
HX cd00094
Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. ...
830-1091 1.75e-39

Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.


Pssm-ID: 238046 [Multi-domain]  Cd Length: 194  Bit Score: 145.15  E-value: 1.75e-39
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  830 TNLCNGKPVDGLTTLRnGTLVAFRGHYFWMLNPFRPPSPPRRITEVW-GIPSPIDTVFTRCNcEGKTFFFKDSQYWRFTN 908
Cdd:cd00094      1 PDACDPLSFDAVTTLR-GELYFFKGRYFWRLSPGKPPGSPFLISSFWpSLPSPVDAAFERPD-TGKIYFFKGDKYWVYTG 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  909 DVVDPGYPKQIVK-GFGGLTGKIVAALSIAkykdRPESVYFFKrGGNIQQYTYKQEPMKKCTGRRPAinysvygeaaqvr 987
Cdd:cd00094     79 KNLEPGYPKPISDlGFPPTVKQIDAALRWP----DNGKTYFFK-GDKYWRYDEKTQKMDPGYPKLIE------------- 140
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  988 rrrferavgpfqthtfrihysvpmrvsyqdkgflhnevkvsTMWRGFPNVVTSAitlpnIRKPDGYdYYAFSKDQYYNID 1067
Cdd:cd00094    141 -----------------------------------------TDFPGVPDKVDAA-----FRWLDGY-YYFFKGDQYWRFD 173
                          250       260
                   ....*....|....*....|....
gi 1907070847 1068 VPTRTARAITTRSGqtlSKIWYNC 1091
Cdd:cd00094    174 PRSKEVRVGYPLKI---SSDWLGC 194
PHA03247 PHA03247
large tegument protein UL36; Provisional
317-632 7.13e-24

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 109.64  E-value: 7.13e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  317 STTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTtpkePEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKePEPTTPKEPE 396
Cdd:PHA03247  2678 SPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPA----PHALVSATPLPPGPAAARQASPALPAAPAPP-AVPAGPATPG 2752
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  397 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPePTTLKEPEPTTPKEPEPTTPKEPE 476
Cdd:PHA03247  2753 GPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADP-PAAVLAPAAALPPAASPAGPLPPP 2831
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  477 PTTLKEPEPTTPKEPEPTT-----------LKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPttPK 545
Cdd:PHA03247  2832 TSAQPTAPPPPPGPPPPSLplggsvapggdVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPER--PP 2909
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  546 EPEPTTPKEPEPTTPKEPEPTtpkePEPTTPKEPEPTTPKKPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPT-T 623
Cdd:PHA03247  2910 QPQAPPPPQPQPQPPPPPQPQ----PPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQpWLGALVPGRVAVPRFRVPQPApS 2985

                   ....*....
gi 1907070847  624 RKEPEPTTP 632
Cdd:PHA03247  2986 REAPASSTP 2994
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
524-640 5.49e-19

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 84.33  E-value: 5.49e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  524 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEP 603
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070847  604 EPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTP 640
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
SO smart00201
Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from ...
25-65 1.36e-17

Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from vitronectin, that is a growth hormone-dependent serum factor with protease-inhibiting activity.


Pssm-ID: 197571  Cd Length: 43  Bit Score: 77.03  E-value: 1.36e-17
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 1907070847    25 QELSCKGRCFESFARGRECDCDSQCKQYGKCCADYDSFCEE 65
Cdd:smart00201    1 AIGSCKGRCGESFNEGNACRCDALCLSYGDCCTDYESVCKK 41
Somatomedin_B pfam01033
Somatomedin B domain;
28-65 2.83e-16

Somatomedin B domain;


Pssm-ID: 426004  Cd Length: 41  Bit Score: 73.17  E-value: 2.83e-16
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 1907070847   28 SCKGRCFESFARGRE-CDCDSQCKQYGKCCADYDSFCEE 65
Cdd:pfam01033    2 SCKGRCGEGFDRGRSlCQCDDDCVSYGDCCPDYESLCLG 40
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
317-690 1.00e-14

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 411408 [Multi-domain]  Cd Length: 557  Bit Score: 78.66  E-value: 1.00e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  317 STTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPkEPEPTTPKEPEPTTPKEPEPTTPKEPE 396
Cdd:NF033839   153 SGSSTKPETPQPENPEHQKPTTPAPDTKPSPQPEGKKPSVPDINQEKEKAKL-AVATYMSKILDDIQKHHLQKEKHRQIV 231
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  397 PTTPKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEP 475
Cdd:NF033839   232 ALIKELDELKKQALSEIDNVNtKVEIENTVHKIFADMDAVVTKFKKGLTQDTPKEPGNKKPSAPKPGMQPSPQPEKKEVK 311
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  476 EPTTLKEPEpTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPTTPKE 554
Cdd:NF033839   312 PEPETPKPE-VKPQLEKPKPEVKPQPEKPKPEVKPQLETPKPEVKPQPEKPKPEvKPQPEKPKPEVKPQPETPKPEVKPQ 390
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  555 PEPTTPK-EPEPTTPKEPEPTTPKEPEPTTPKKPEPTTP-KEPEPTTPKEPEPTTPKEPEPTTPKEPE-PTTRKEPEPTT 631
Cdd:NF033839   391 PEKPKPEvKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPeVKPQPEKPKPEVKPQPEKPKPEVKPQPEtPKPEVKPQPEK 470
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070847  632 PKEPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQNKPEETTPAS 690
Cdd:NF033839   471 PKPEVKPQPEKPKPDNSKPQADDKKPSTPNNLSKDKQPSNQASTNEKATNKPKKSLPST 529
HX smart00120
Hemopexin-like repeats; Hemopexin is a heme-binding protein that transports heme to the liver. ...
882-926 3.06e-12

Hemopexin-like repeats; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs).


Pssm-ID: 214524 [Multi-domain]  Cd Length: 45  Bit Score: 61.87  E-value: 3.06e-12
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*
gi 1907070847   882 IDTVFTRCNceGKTFFFKDSQYWRFTNDVVDPGYPKQIVKGFGGL 926
Cdd:smart00120    1 IDAAFELRD--GKTYFFKGDKYWRFDPKRVDPGYPKLISSFFPGL 43
Hemopexin pfam00045
Hemopexin; Hemopexin is a heme-binding protein that transports heme to the liver. ...
882-919 1.45e-09

Hemopexin; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metallopeptidases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metallopeptidases (TIMPs).


Pssm-ID: 395000 [Multi-domain]  Cd Length: 44  Bit Score: 54.49  E-value: 1.45e-09
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 1907070847  882 IDTVFTRCNceGKTFFFKDSQYWRFTNDVVDPGYPKQI 919
Cdd:pfam00045    1 IDAAFEDRD--GKTYFFKGRKYWRFDPQRVEPGYPKLI 36
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
378-759 1.60e-09

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 411408 [Multi-domain]  Cd Length: 557  Bit Score: 61.71  E-value: 1.60e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  378 EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLK 457
Cdd:NF033839   158 KPETPQPENPEHQKPTTPAPDTKPSPQPEGKKPSVPDINQEKEKAKL-AVATYMSKILDDIQKHHLQKEKHRQIVALIKE 236
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  458 EPEPTTPKEPEPTTPK-EPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTP 536
Cdd:NF033839   237 LDELKKQALSEIDNVNtKVEIENTVHKIFADMDAVVTKFKKGLTQDTPKEPGNKKPSAPKPGMQPSPQPEKKEVKPEPET 316
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  537 KEPEpTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK-KPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 615
Cdd:NF033839   317 PKPE-VKPQLEKPKPEVKPQPEKPKPEVKPQLETPKPEVKPQPEKPKPEvKPQPEKPKPEVKPQPETPKPEVKPQPEKPK 395
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  616 PK-EPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTaPAEEIQNKPEETTPASEDSD 694
Cdd:NF033839   396 PEvKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVK-PQPETPKPEVKPQPEKPKPE 474
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907070847  695 DSKTTLKPQKPTKAPKPTKKPTKAPKKPTSTKKPKTPKTRKPKTTPSPLKTTSATPELNTTPLEV 759
Cdd:NF033839   475 VKPQPEKPKPDNSKPQADDKKPSTPNNLSKDKQPSNQASTNEKATNKPKKSLPSTGSISNLALEI 539
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
328-601 2.47e-08

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 58.42  E-value: 2.47e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  328 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTtlKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 407
Cdd:NF033845   543 PKDPTPGPPVDPEPSPEPEPEPTPDPEPSPD--PDPEPSPDPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDSDS 620
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  408 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTT 487
Cdd:NF033845   621 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 700
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  488 PKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 567
Cdd:NF033845   701 SSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 780
                          250       260       270
                   ....*....|....*....|....*....|....
gi 1907070847  568 PKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPK 601
Cdd:NF033845   781 DSDSDSDSDSDSDSDSDSRVTPPNNEQKAPSNPK 814
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
344-617 4.96e-08

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 57.26  E-value: 4.96e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  344 PKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPttpkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 423
Cdd:NF033845   543 PKDPTPGPPVDPEPSPEPEPEPTPDPEPSPDPDPEPSP----DPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDS 618
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  424 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTT 503
Cdd:NF033845   619 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 698
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  504 PKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 583
Cdd:NF033845   699 SDSSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 778
                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 1907070847  584 PKKPEPTTPKEPEPTTPKEPEPTTP--KEPEPTTPK 617
Cdd:NF033845   779 DSDSDSDSDSDSDSDSDSDSRVTPPnnEQKAPSNPK 814
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
368-641 5.63e-08

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 57.26  E-value: 5.63e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  368 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPttpkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 447
Cdd:NF033845   543 PKDPTPGPPVDPEPSPEPEPEPTPDPEPSPDPDPEPSP----DPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDS 618
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  448 PKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTT 527
Cdd:NF033845   619 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 698
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  528 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTT 607
Cdd:NF033845   699 SDSSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 778
                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 1907070847  608 PKEPEPTTPKEPEPTTRKEPEPTTP--KEPEPTTPK 641
Cdd:NF033845   779 DSDSDSDSDSDSDSDSDSDSRVTPPnnEQKAPSNPK 814
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
336-609 6.13e-08

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 56.88  E-value: 6.13e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  336 PKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPttpkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 415
Cdd:NF033845   543 PKDPTPGPPVDPEPSPEPEPEPTPDPEPSPDPDPEPSP----DPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDS 618
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  416 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTT 495
Cdd:NF033845   619 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 698
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  496 LKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 575
Cdd:NF033845   699 SDSSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 778
                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 1907070847  576 PKEPEPTTPKKPEPTTPKEPEPTTP--KEPEPTTPK 609
Cdd:NF033845   779 DSDSDSDSDSDSDSDSDSDSRVTPPnnEQKAPSNPK 814
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
376-649 9.71e-08

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 56.49  E-value: 9.71e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  376 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPttpkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 455
Cdd:NF033845   543 PKDPTPGPPVDPEPSPEPEPEPTPDPEPSPDPDPEPSP----DPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDS 618
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  456 LKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTT 535
Cdd:NF033845   619 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 698
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  536 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 615
Cdd:NF033845   699 SDSSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 778
                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 1907070847  616 PKEPEPTTRKEPEPTTPKEPEPTTP--KEPEPTTPK 649
Cdd:NF033845   779 DSDSDSDSDSDSDSDSDSDSRVTPPnnEQKAPSNPK 814
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
321-593 1.36e-07

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 55.72  E-value: 1.36e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  321 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPttlkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 400
Cdd:NF033845   544 KDPTPGPPVDPEPSPEPEPEPTPDPEPSPDPDPEPSP----DPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDSD 619
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  401 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTL 480
Cdd:NF033845   620 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 699
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  481 KEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 560
Cdd:NF033845   700 DSSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 779
                          250       260       270
                   ....*....|....*....|....*....|....*
gi 1907070847  561 KEPEPTTPKEPEPTTPKEPEPTTPKKPE--PTTPK 593
Cdd:NF033845   780 SDSDSDSDSDSDSDSDSDSRVTPPNNEQkaPSNPK 814
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
440-702 6.35e-07

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 53.79  E-value: 6.35e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  440 PKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPttlkEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTT 519
Cdd:NF033845   543 PKDPTPGPPVDPEPSPEPEPEPTPDPEPSPDPDPEPSP----DPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDS 618
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  520 RKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTT 599
Cdd:NF033845   619 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 698
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  600 PKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEI 679
Cdd:NF033845   699 SDSSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 778
                          250       260
                   ....*....|....*....|....
gi 1907070847  680 QNKPEETTPASEDSD-DSKTTLKP 702
Cdd:NF033845   779 DSDSDSDSDSDSDSDsDSDSRVTP 802
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
361-633 1.14e-06

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 52.64  E-value: 1.14e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  361 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTtpKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 440
Cdd:NF033845   544 KDPTPGPPVDPEPSPEPEPEPTPDPEPSPD--PDPEPSPDPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDSDSD 621
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  441 KEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTR 520
Cdd:NF033845   622 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 701
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  521 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTP 600
Cdd:NF033845   702 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 781
                          250       260       270
                   ....*....|....*....|....*....|...
gi 1907070847  601 KEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPK 633
Cdd:NF033845   782 SDSDSDSDSDSDSDSDSRVTPPNNEQKAPSNPK 814
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
505-809 6.06e-06

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 50.46  E-value: 6.06e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  505 KEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKEPE-- 580
Cdd:PTZ00449   493 KKKLAPIEEEDSDKHDEPPEGPEASGLPPKAPGDKEGEEGeHEDSKESDEPKEGGKPGEtKEGEVGKKPGPAKEHKPSki 572
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  581 PTTPKKPEptTPKEPE-PTTPKEP-EPTTPKEPE-PTTPKEPepttrKEPE----PTTPKEPE-PTTPKEPEPTTPKKPE 652
Cdd:PTZ00449   573 PTLSKKPE--FPKDPKhPKDPEEPkKPKRPRSAQrPTRPKSP-----KLPElldiPKSPKRPEsPKSPKRPPPPQRPSSP 645
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  653 PTTTSPKTTTLKATTLAPKVTAPAEEIQNKPEETTPASEDSDDSKTTLKPQKPTKAPKPTKKPTKAPKKPTSTKKPKTPK 732
Cdd:PTZ00449   646 ERPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKL 725
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  733 TRKPKTTPSPLKTTSATP----ELNTTPLEVMLPTTTIPKQTPNPE--TAEVNPDHEDADGGEGEKPLI-PGPPVLFPTA 805
Cdd:PTZ00449   726 PRDEEFPFEPIGDPDAEQpddiEFFTPPEEERTFFHETPADTPLPDilAEEFKEEDIHAETGEPDEAMKrPDSPSEHEDK 805

                   ....
gi 1907070847  806 IPGT 809
Cdd:PTZ00449   806 PPGD 809
TonB COG0810
Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope ...
524-650 5.86e-05

Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 223880 [Multi-domain]  Cd Length: 244  Bit Score: 45.93  E-value: 5.86e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  524 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPkepepttPKKPEPTTPKEPEPTTPKEP 603
Cdd:COG0810     35 ELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEK-------PKPEKKPKKPKPKPKPKPKP 107
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1907070847  604 EPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPKK 650
Cdd:COG0810    108 KPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSAS 154
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
505-649 8.88e-05

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 411407 [Multi-domain]  Cd Length: 684  Bit Score: 46.54  E-value: 8.88e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  505 KEPEPTTTKEPESTTRKEPEPTTPKEPEPTtpKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPeptTPKEPEPTTP 584
Cdd:NF033838   351 KEAELELVKEEAKEPRNEEKIKQAKAKVES--KKAEATRLEKIKTDRKKAEEEAKRKAAEEDKVKEK---PAEQPQPAPA 425
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070847  585 KKPEPTTPKEPEPT-TPKEPEPTTPKEPEPTTPKEPEpttrkEPEPTTPKEPePTTPKEPEPTTPK 649
Cdd:NF033838   426 PQPEKPAPKPEKPAeQPKAEKPADQQAEEDYARRSEE-----EYNRLTQQQP-PKTEKPAQPSTPK 485
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
353-625 3.88e-04

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 411407 [Multi-domain]  Cd Length: 684  Bit Score: 44.62  E-value: 3.88e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  353 KEPEPTTLKEPEptTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE-------PEPTTPKEPEpTTPKEPEPTTPK 425
Cdd:NF033838   216 KKAEATRLEKIK--TDREKAEEEAKRRADAKLKEAVEKNVATSEQDKPKRrakrgvlGEPATPDKKE-NDAKSSDSSVGE 292
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  426 EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPE----PT-TPKEPE------PTTPKEPEPTTLKEpEPTTPKEPEPt 494
Cdd:NF033838   293 ETLPSPSLKPEKKVAEAEKKVEEAKKKAKDQKEEDrrnyPTnTYKTLEleiaesDVKVKEAELELVKE-EAKEPRNEEK- 370
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  495 tLKEP-EPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEpEPTTPKEPEPTtpkePEPTTPKePEPTTPKEpep 573
Cdd:NF033838   371 -IKQAkAKVESKKAEATRLEKIKTDRKKAEEEAKRKAAEEDKVKE-KPAEQPQPAPA----PQPEKPA-PKPEKPAE--- 440
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1907070847  574 tTPKEPEPTTPKKPEPTTPKEPEpttpkEPEPTTPKEPePTTPKEPEPTTRK 625
Cdd:NF033838   441 -QPKAEKPADQQAEEDYARRSEE-----EYNRLTQQQP-PKTEKPAQPSTPK 485
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
478-538 5.68e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 43.35  E-value: 5.68e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070847  478 TTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKE 538
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
320-409 5.35e-03

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 411407 [Multi-domain]  Cd Length: 684  Bit Score: 40.76  E-value: 5.35e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  320 RKEPEPTTPKEPeptTPKEPEPTTPKEPEPTTPKEPEPTTLKEPE-PTTPKEPEPTTPKEPEpttpkEPEPTTPKEPePT 398
Cdd:NF033838   404 RKAAEEDKVKEK---PAEQPQPAPAPQPEKPAPKPEKPAEQPKAEkPADQQAEEDYARRSEE-----EYNRLTQQQP-PK 474
                           90
                   ....*....|.
gi 1907070847  399 TPKEPEPTTPK 409
Cdd:NF033838   475 TEKPAQPSTPK 485
 
Name Accession Description Interval E-value
HX cd00094
Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. ...
830-1091 1.75e-39

Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.


Pssm-ID: 238046 [Multi-domain]  Cd Length: 194  Bit Score: 145.15  E-value: 1.75e-39
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  830 TNLCNGKPVDGLTTLRnGTLVAFRGHYFWMLNPFRPPSPPRRITEVW-GIPSPIDTVFTRCNcEGKTFFFKDSQYWRFTN 908
Cdd:cd00094      1 PDACDPLSFDAVTTLR-GELYFFKGRYFWRLSPGKPPGSPFLISSFWpSLPSPVDAAFERPD-TGKIYFFKGDKYWVYTG 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  909 DVVDPGYPKQIVK-GFGGLTGKIVAALSIAkykdRPESVYFFKrGGNIQQYTYKQEPMKKCTGRRPAinysvygeaaqvr 987
Cdd:cd00094     79 KNLEPGYPKPISDlGFPPTVKQIDAALRWP----DNGKTYFFK-GDKYWRYDEKTQKMDPGYPKLIE------------- 140
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  988 rrrferavgpfqthtfrihysvpmrvsyqdkgflhnevkvsTMWRGFPNVVTSAitlpnIRKPDGYdYYAFSKDQYYNID 1067
Cdd:cd00094    141 -----------------------------------------TDFPGVPDKVDAA-----FRWLDGY-YYFFKGDQYWRFD 173
                          250       260
                   ....*....|....*....|....
gi 1907070847 1068 VPTRTARAITTRSGqtlSKIWYNC 1091
Cdd:cd00094    174 PRSKEVRVGYPLKI---SSDWLGC 194
PHA03247 PHA03247
large tegument protein UL36; Provisional
317-632 7.13e-24

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 109.64  E-value: 7.13e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  317 STTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTtpkePEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKePEPTTPKEPE 396
Cdd:PHA03247  2678 SPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPA----PHALVSATPLPPGPAAARQASPALPAAPAPP-AVPAGPATPG 2752
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  397 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPePTTLKEPEPTTPKEPEPTTPKEPE 476
Cdd:PHA03247  2753 GPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADP-PAAVLAPAAALPPAASPAGPLPPP 2831
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  477 PTTLKEPEPTTPKEPEPTT-----------LKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPttPK 545
Cdd:PHA03247  2832 TSAQPTAPPPPPGPPPPSLplggsvapggdVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPER--PP 2909
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  546 EPEPTTPKEPEPTTPKEPEPTtpkePEPTTPKEPEPTTPKKPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPT-T 623
Cdd:PHA03247  2910 QPQAPPPPQPQPQPPPPPQPQ----PPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQpWLGALVPGRVAVPRFRVPQPApS 2985

                   ....*....
gi 1907070847  624 RKEPEPTTP 632
Cdd:PHA03247  2986 REAPASSTP 2994
PHA03247 PHA03247
large tegument protein UL36; Provisional
323-648 4.35e-22

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 103.86  E-value: 4.35e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  323 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPePTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 402
Cdd:PHA03247  2712 PHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARP-PTTAGPPAPAPPAAPAAGPPRRLTRPAVAS 2790
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  403 PEPTTPKEPEPTTPKEPE----PTTPKEPEPTTPK--EPEPTTPKEPEPTTPKEPEPTTL------------KEPEPTTP 464
Cdd:PHA03247  2791 LSESRESLPSPWDPADPPaavlAPAAALPPAASPAgpLPPPTSAQPTAPPPPPGPPPPSLplggsvapggdvRRRPPSRS 2870
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  465 KEPEPTTPKEPEPTTLKEPEPTTPKE--PEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPT 542
Cdd:PHA03247  2871 PAAKPAAPARPPVRRLARPAVSRSTEsfALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPA 2950
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  543 TPKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPTTPKE-PEPTTPKKPEPTTPK--------------EPEPTTPKE---- 602
Cdd:PHA03247  2951 GAGEPSGAVPQpWLGALVPGRVAVPRFRVPQPAPSREaPASSTPPLTGHSLSRvsswasslalheetDPPPVSLKQtlwp 3030
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*.
gi 1907070847  603 PEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTpKEPEPTTP 648
Cdd:PHA03247  3031 PDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDPFA-HEPDPATP 3075
PHA03247 PHA03247
large tegument protein UL36; Provisional
320-826 2.49e-21

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 101.17  E-value: 2.49e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  320 RKEPEPTTPKEPEPTtpKEPEPTTPKEPE-PTTPKEPEPTTLKEPEPTTPKEPEPTT----PKEPEPTTPKEPEPTTPKE 394
Cdd:PHA03247  2481 RRPAEARFPFAAGAA--PDPGGGGPPDPDaPPAPSRLAPAILPDEPVGEPVHPRMLTwirgLEELASDDAGDPPPPLPPA 2558
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  395 PEPTTPKEPEPTTPKEPEPTTP----KEPEPTTPkePEPTTPKEP--EPTTPKEPEPTTPKEPEPTTLKEPEPTtpkePE 468
Cdd:PHA03247  2559 APPAAPDRSVPPPRPAPRPSEPavtsRARRPDAP--PQSARPRAPvdDRGDPRGPAPPSPLPPDTHAPDPPPPS----PS 2632
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  469 PTTPKEPEPTTLKEPEPTTPKE-PEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEP 547
Cdd:PHA03247  2633 PAANEPDPHPPPTVPPPERPRDdPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAP 2712
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  548 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKePEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEP 627
Cdd:PHA03247  2713 HALVSATPLPPGPAAARQASPALPAAPAPP-AVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASL 2791
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  628 EPTTPKEPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQNKPEETTPASEDSDDSKTTLKPqkptk 707
Cdd:PHA03247  2792 SESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRP----- 2866
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  708 apkptkkptkapkkptstkkPKTPKTRKPKTTPSPLKTTSATPELNTTPLEVMLPTTTIPKQtPNPETAEVNPDHEDADG 787
Cdd:PHA03247  2867 --------------------PSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERP-PQPQAPPPPQPQPQPPP 2925
                          490       500       510
                   ....*....|....*....|....*....|....*....
gi 1907070847  788 GEGEKPLIPGPPVLFPTAIPGTDLLAGRLNQGININPML 826
Cdd:PHA03247  2926 PPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWL 2964
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
524-640 5.49e-19

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 84.33  E-value: 5.49e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  524 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEP 603
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070847  604 EPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTP 640
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
340-453 6.11e-19

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 83.95  E-value: 6.11e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  340 EPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 419
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....
gi 1907070847  420 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 453
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEP 120
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
332-448 6.11e-19

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 83.95  E-value: 6.11e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  332 EPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 411
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070847  412 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 448
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
324-440 6.11e-19

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 83.95  E-value: 6.11e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  324 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 403
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070847  404 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 440
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
532-648 6.23e-19

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 83.95  E-value: 6.23e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  532 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEP 611
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070847  612 EPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTP 648
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
364-477 6.29e-19

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 83.95  E-value: 6.29e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  364 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 443
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....
gi 1907070847  444 EPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEP 477
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEP 120
PHA03247 PHA03247
large tegument protein UL36; Provisional
242-690 1.73e-18

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 91.92  E-value: 1.73e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  242 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE-----PPPTTKKPEPTTPKEPEPTTPKEPEPTTTKEPEPTTTKEPE 316
Cdd:PHA03247  2502 GPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTwirglEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPA 2581
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  317 STTRKE-----PEPTTPKEP--EPTTPKEPEPTTPKEPEPTTPKEPEPTtlKEPEPTTPKEPEPtTPKEPEPTTPKEPEP 389
Cdd:PHA03247  2582 VTSRARrpdapPQSARPRAPvdDRGDPRGPAPPSPLPPDTHAPDPPPPS--PSPAANEPDPHPP-PTVPPPERPRDDPAP 2658
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  390 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEP 469
Cdd:PHA03247  2659 GRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAA 2738
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  470 TTPKEPEPTTLKEPEPTTPKEPePTTLKEPEPTTPKEP---EPTTTKEPESTTRKEPEPTTPKEPEPT---------TPK 537
Cdd:PHA03247  2739 PAPPAVPAGPATPGGPARPARP-PTTAGPPAPAPPAAPaagPPRRLTRPAVASLSESRESLPSPWDPAdppaavlapAAA 2817
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  538 EPEPTTPK--EPEPTTPKEPEPTTPKEPEPTT--------------------PKEPEPTTPKEPEPTTPKKPEPTTPKEP 595
Cdd:PHA03247  2818 LPPAASPAgpLPPPTSAQPTAPPPPPGPPPPSlplggsvapggdvrrrppsrSPAAKPAAPARPPVRRLARPAVSRSTES 2897
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  596 EPTTPKEPEPttPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTAP 675
Cdd:PHA03247  2898 FALPPDQPER--PPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVP 2975
                          490
                   ....*....|....*.
gi 1907070847  676 AEEI-QNKPEETTPAS 690
Cdd:PHA03247  2976 RFRVpQPAPSREAPAS 2991
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
380-493 3.14e-18

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 82.02  E-value: 3.14e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  380 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEP 459
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....
gi 1907070847  460 EPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEP 493
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEP 120
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
356-472 4.41e-18

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 81.64  E-value: 4.41e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  356 EPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 435
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070847  436 EPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTP 472
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
523-632 5.57e-18

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 81.25  E-value: 5.57e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  523 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKE 602
Cdd:pfam02389   14 QEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVPEPCHPKA 93
                           90       100       110
                   ....*....|....*....|....*....|
gi 1907070847  603 PEPTTPKEPEPTTPKEPEPTTRKEPEPTTP 632
Cdd:pfam02389   94 PEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
323-432 6.19e-18

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 81.25  E-value: 6.19e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  323 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 402
Cdd:pfam02389   14 QEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVPEPCHPKA 93
                           90       100       110
                   ....*....|....*....|....*....|
gi 1907070847  403 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 432
Cdd:pfam02389   94 PEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
500-616 6.37e-18

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 81.25  E-value: 6.37e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  500 EPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 579
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070847  580 EPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 616
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
SO smart00201
Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from ...
25-65 1.36e-17

Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from vitronectin, that is a growth hormone-dependent serum factor with protease-inhibiting activity.


Pssm-ID: 197571  Cd Length: 43  Bit Score: 77.03  E-value: 1.36e-17
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 1907070847    25 QELSCKGRCFESFARGRECDCDSQCKQYGKCCADYDSFCEE 65
Cdd:smart00201    1 AIGSCKGRCGESFNEGNACRCDALCLSYGDCCTDYESVCKK 41
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
396-509 1.57e-17

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 80.10  E-value: 1.57e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  396 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEP 475
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....
gi 1907070847  476 EPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEP 509
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEP 120
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
492-608 2.60e-17

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 79.33  E-value: 2.60e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  492 EPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 571
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070847  572 EPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTP 608
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
369-488 7.76e-17

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 78.17  E-value: 7.76e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  369 KEPEPTTPkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 448
Cdd:pfam02389    6 KQPCQPPP--QEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSP 83
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1907070847  449 KEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTP 488
Cdd:pfam02389   84 KVPEPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
345-464 8.14e-17

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 78.17  E-value: 8.14e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  345 KEPEPTTPKEPEPTTLKepEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 424
Cdd:pfam02389    6 KQPCQPPPQEPCVPTTK--EPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSP 83
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1907070847  425 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTP 464
Cdd:pfam02389   84 KVPEPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
404-516 8.71e-17

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 77.79  E-value: 8.71e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  404 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEP 483
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|...
gi 1907070847  484 EPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPE 516
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPE 119
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
460-576 9.42e-17

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 77.79  E-value: 9.42e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  460 EPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEP 539
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070847  540 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 576
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
476-592 1.30e-16

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 77.40  E-value: 1.30e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  476 EPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 555
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070847  556 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTP 592
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Somatomedin_B pfam01033
Somatomedin B domain;
28-65 2.83e-16

Somatomedin B domain;


Pssm-ID: 426004  Cd Length: 41  Bit Score: 73.17  E-value: 2.83e-16
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 1907070847   28 SCKGRCFESFARGRE-CDCDSQCKQYGKCCADYDSFCEE 65
Cdd:pfam01033    2 SCKGRCGEGFDRGRSlCQCDDDCVSYGDCCPDYESLCLG 40
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
385-504 3.87e-16

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 76.25  E-value: 3.87e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  385 KEPEPTTPkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTP 464
Cdd:pfam02389    6 KQPCQPPP--QEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSP 83
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1907070847  465 KEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTP 504
Cdd:pfam02389   84 KVPEPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
420-536 7.70e-16

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 75.09  E-value: 7.70e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  420 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEP 499
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070847  500 EPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTP 536
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
319-644 7.95e-16

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 82.82  E-value: 7.95e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  319 TRKEPEPTTPKEP-EPTTPKEPE-PTTPKEP-EPTTPKEPEPTTLkepePTTPKEPE-PTTPKEP----EPTTPKEPE-P 389
Cdd:PTZ00449   576 SKKPEFPKDPKHPkDPEEPKKPKrPRSAQRPtRPKSPKLPELLDI----PKSPKRPEsPKSPKRPpppqRPSSPERPEgP 651
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  390 TTPKEPE-PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPePTTPKEPE 468
Cdd:PTZ00449   652 KIIKSPKpPKSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLP-PKLPRDEE 730
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  469 P--TTPKEPEPTTLKEPEPTTPKEPEPTTLKEpepTTPKEPEPTTTKEPESTTRKEPEPTTPKEP--EPTTPKEPEPTTP 544
Cdd:PTZ00449   731 FpfEPIGDPDAEQPDDIEFFTPPEEERTFFHE---TPADTPLPDILAEEFKEEDIHAETGEPDEAmkRPDSPSEHEDKPP 807
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  545 KEpEPTTPKEPE-------PTTPKEPEP-TTPKEP--EPTTPKEPEP----TTPKKPEPTTPKEPEPTTPKEPEPTTPKE 610
Cdd:PTZ00449   808 GD-HPSLPKKRHrldglalSTTDLESDAgRIAKDAsgKIVKLKRSKSfddlTTVEEAEEMGAEARKIVVDDDGTEADDED 886
                          330       340       350
                   ....*....|....*....|....*....|....
gi 1907070847  611 PEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPE 644
Cdd:PTZ00449   887 THPPEEKHKSEVRRRRPPKKPSKPKKPSKPKKPK 920
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
436-552 8.48e-16

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 75.09  E-value: 8.48e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  436 EPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEP 515
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070847  516 ESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 552
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
444-560 8.65e-16

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 75.09  E-value: 8.65e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  444 EPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEP 523
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070847  524 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 560
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
452-568 9.53e-16

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 75.09  E-value: 9.53e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  452 EPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEP 531
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070847  532 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 568
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
428-544 1.58e-15

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 74.32  E-value: 1.58e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  428 EPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEP 507
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070847  508 EPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTP 544
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
321-416 3.26e-15

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 73.55  E-value: 3.26e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  321 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 400
Cdd:pfam02389   28 KVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVPEPCHPKAPEPCHPKVPEPCYP 107
                           90
                   ....*....|....*.
gi 1907070847  401 KEPEPTTPKEPEPTTP 416
Cdd:pfam02389  108 KAPEPCQPKVPEPCPS 123
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
317-690 1.00e-14

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 411408 [Multi-domain]  Cd Length: 557  Bit Score: 78.66  E-value: 1.00e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  317 STTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPkEPEPTTPKEPEPTTPKEPEPTTPKEPE 396
Cdd:NF033839   153 SGSSTKPETPQPENPEHQKPTTPAPDTKPSPQPEGKKPSVPDINQEKEKAKL-AVATYMSKILDDIQKHHLQKEKHRQIV 231
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  397 PTTPKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEP 475
Cdd:NF033839   232 ALIKELDELKKQALSEIDNVNtKVEIENTVHKIFADMDAVVTKFKKGLTQDTPKEPGNKKPSAPKPGMQPSPQPEKKEVK 311
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  476 EPTTLKEPEpTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPTTPKE 554
Cdd:NF033839   312 PEPETPKPE-VKPQLEKPKPEVKPQPEKPKPEVKPQLETPKPEVKPQPEKPKPEvKPQPEKPKPEVKPQPETPKPEVKPQ 390
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  555 PEPTTPK-EPEPTTPKEPEPTTPKEPEPTTPKKPEPTTP-KEPEPTTPKEPEPTTPKEPEPTTPKEPE-PTTRKEPEPTT 631
Cdd:NF033839   391 PEKPKPEvKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPeVKPQPEKPKPEVKPQPEKPKPEVKPQPEtPKPEVKPQPEK 470
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070847  632 PKEPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQNKPEETTPAS 690
Cdd:NF033839   471 PKPEVKPQPEKPKPDNSKPQADDKKPSTPNNLSKDKQPSNQASTNEKATNKPKKSLPST 529
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
409-528 1.67e-14

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 71.24  E-value: 1.67e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  409 KEPEPTTPkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTP 488
Cdd:pfam02389    6 KQPCQPPP--QEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSP 83
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1907070847  489 KEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTP 528
Cdd:pfam02389   84 KVPEPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
345-650 7.97e-14

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 76.27  E-value: 7.97e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  345 KEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEptTPKE-PEPTTPKEPEPTtpKEPEPTT 423
Cdd:PTZ00449   490 KKSKKKLAPIEEEDSDKHDEPPEGPEASGLPPKAPGDKEGEEGEHEDSKESD--EPKEgGKPGETKEGEVG--KKPGPAK 565
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  424 PKEPEPTTPKEPEPTTPKEPE-PTTPKEPEpttlKEPEPTTPKEP-EPTTPKEPE----PTTLKEPE-PTTPKEP----E 492
Cdd:PTZ00449   566 EHKPSKIPTLSKKPEFPKDPKhPKDPEEPK----KPKRPRSAQRPtRPKSPKLPElldiPKSPKRPEsPKSPKRPpppqR 641
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  493 PTTLKEPE-PTTPKEPEPTTTKEP-----------------ESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPePTTPKE 554
Cdd:PTZ00449   642 PSSPERPEgPKIIKSPKPPKSPKPpfdpkfkekfyddyldaAAKSKETKTTVVLDESFESILKETLPETPGTP-FTTPRP 720
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  555 PEPTTPKEPEP--TTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKePEPTTPKEPEPTTPKEPEPTTRKEPEPTTP 632
Cdd:PTZ00449   721 LPPKLPRDEEFpfEPIGDPDAEQPDDIEFFTPPEEERTFFHETPADTPL-PDILAEEFKEEDIHAETGEPDEAMKRPDSP 799
                          330
                   ....*....|....*...
gi 1907070847  633 KEPEPTTPKEpEPTTPKK 650
Cdd:PTZ00449   800 SEHEDKPPGD-HPSLPKK 816
PHA03247 PHA03247
large tegument protein UL36; Provisional
107-640 2.56e-13

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 74.97  E-value: 2.56e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  107 PttphskvttspkttAAKPVTPKPSLAPNSETSKEASLAsnkettvetkettatnkqssaskkktTSAKETRSaektsdk 186
Cdd:PHA03247  2557 P--------------AAPPAAPDRSVPPPRPAPRPSEPA--------------------------VTSRARRP------- 2589
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  187 DVEPTSTTPKNSAPTTTKKPVTTTKEPvpttpkepepttpkepppttkkpepttpkepepttpkepeptTPKEPEPTTPK 266
Cdd:PHA03247  2590 DAPPQSARPRAPVDDRGDPRGPAPPSP------------------------------------------LPPDTHAPDPP 2627
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  267 EPEPTTPKEPPPTTKKPEPTTPKEPEPTTPKEPEPTTTKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKE 346
Cdd:PHA03247  2628 PPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPT 2707
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  347 PEPttpkEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 426
Cdd:PHA03247  2708 PEP----APHALVSATPLPPGPAAARQASPALPAAPAPP-AVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRR 2782
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  427 PEPTTPKEPEPTTPKEPEPTTPKEPePTTLKEPEPTTPKEPEPTTPkEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKE 506
Cdd:PHA03247  2783 LTRPAVASLSESRESLPSPWDPADP-PAAVLAPAAALPPAASPAGP-LPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGG 2860
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  507 P----EPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPttPKEPEPTTPKEPEPTTPKEPEPTtpkePEPT 582
Cdd:PHA03247  2861 DvrrrPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPER--PPQPQAPPPPQPQPQPPPPPQPQ----PPPP 2934
                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  583 TPKKPEPTTPKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTRKEPEPTTPKE-PEPTTP 640
Cdd:PHA03247  2935 PPPRPQPPLAPTTDPAGAGEPSGAVPQpWLGALVPGRVAVPRFRVPQPAPSREaPASSTP 2994
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
325-726 3.36e-13

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 74.34  E-value: 3.36e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  325 PTTPKEPEPTTP-KEPEPTTPKEPEPTTPKE-PEPTTLKEPEPTTPKEPE--PTTPKEPE-PTTPKEP-EPTTPKEPE-P 397
Cdd:PTZ00449   521 PKAPGDKEGEEGeHEDSKESDEPKEGGKPGEtKEGEVGKKPGPAKEHKPSkiPTLSKKPEfPKDPKHPkDPEEPKKPKrP 600
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  398 TTPKEP-EPTTPKEPE----PTTPKEPE-PTTPKEPEPTTpkepEPTTPKEPE-PTTPKEPEPttlkepePTTPKEPEPT 470
Cdd:PTZ00449   601 RSAQRPtRPKSPKLPElldiPKSPKRPEsPKSPKRPPPPQ----RPSSPERPEgPKIIKSPKP-------PKSPKPPFDP 669
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  471 TPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPePTTPKEPEP--TTPKEPEPTTPKEPE 548
Cdd:PTZ00449   670 KFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLP-PKLPRDEEFpfEPIGDPDAEQPDDIE 748
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  549 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEpEPTTPKEPEPTTPKepepTTPKEPEPTTRKEPE 628
Cdd:PTZ00449   749 FFTPPEEERTFFHETPADTPLPDILAEEFKEEDIHAETGEPDEAMK-RPDSPSEHEDKPPG----DHPSLPKKRHRLDGL 823
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  629 PTTPKEPEpTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQNKPEETTPASEDsddsktTLKPQKPTKA 708
Cdd:PTZ00449   824 ALSTTDLE-SDAGRIAKDASGKIVKLKRSKSFDDLTTVEEAEEMGAEARKIVVDDDGTEADDED------THPPEEKHKS 896
                          410
                   ....*....|....*...
gi 1907070847  709 PKPTKKPTKAPKKPTSTK 726
Cdd:PTZ00449   897 EVRRRRPPKKPSKPKKPS 914
PRK10263 PRK10263
DNA translocase FtsK; Provisional
396-611 8.42e-13

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 73.20  E-value: 8.42e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  396 EPTTPKEPEPTTPKEP-EPTTPKEPEPTtPKEPEPTTPKEPEPTTPkEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKE 474
Cdd:PRK10263   338 EPVTQTPPVASVDVPPaQPTVAWQPVPG-PQTGEPVIAPAPEGYPQ-QSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQP 415
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  475 PEPTTLKEPEPTTPKEPEPTtlkePEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 554
Cdd:PRK10263   416 AQQPYYAPAPEQPAQQPYYA----PAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVE 491
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907070847  555 PEP----TTPKEPEPTTPKEPEPTTPKEPEPTTP-KKPEPTTPKEPEPTTPKEPEPTTPKEP 611
Cdd:PRK10263   492 PEPvveeTKPARPPLYYFEEVEEKRAREREQLAAwYQPIPEPVKEPEPIKSSLKAPSVAAVP 553
HX smart00120
Hemopexin-like repeats; Hemopexin is a heme-binding protein that transports heme to the liver. ...
882-926 3.06e-12

Hemopexin-like repeats; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs).


Pssm-ID: 214524 [Multi-domain]  Cd Length: 45  Bit Score: 61.87  E-value: 3.06e-12
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*
gi 1907070847   882 IDTVFTRCNceGKTFFFKDSQYWRFTNDVVDPGYPKQIVKGFGGL 926
Cdd:smart00120    1 IDAAFELRD--GKTYFFKGDKYWRFDPKRVDPGYPKLISSFFPGL 43
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
329-645 5.23e-12

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 70.59  E-value: 5.23e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  329 KEPEPTTPKEPEPTtPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT--PKEPEPTTPKE---- 402
Cdd:PHA03307    59 AAACDRFEPPTGPP-PGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTppPASPPPSPAPDlsem 137
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  403 --PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTL 480
Cdd:PHA03307   138 lrPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASA 217
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  481 KEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPE----PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 556
Cdd:PHA03307   218 SSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPApitlPTRIWEASGWNGPSSRPGPASSSSSPRERSPS 297
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  557 PTTPKEPEPTTPKEPEPTTPKEPEPTT-PKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEP 635
Cdd:PHA03307   298 PSPSSPGSGPAPSSPRASSSSSSSRESsSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSS 377
                          330
                   ....*....|
gi 1907070847  636 EPTTPKEPEP 645
Cdd:PHA03307   378 PAASAGRPTR 387
PRK10263 PRK10263
DNA translocase FtsK; Provisional
364-587 8.23e-12

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 69.73  E-value: 8.23e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  364 EPTTPKEPEPTTPKEP-EPTTPKEPEPTtPKEPEPTTPKEPEPTTPkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 442
Cdd:PRK10263   338 EPVTQTPPVASVDVPPaQPTVAWQPVPG-PQTGEPVIAPAPEGYPQ-QSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQP 415
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  443 PEPTTPKEPEPTTLKEPEPTtpkePEPTTPKEPEPTTLKEPEPttPKEPEPTTLKEPEPTTPKEPEPTTTKEPESttrkE 522
Cdd:PRK10263   416 AQQPYYAPAPEQPAQQPYYA----PAPEQPVAGNAWQAEEQQS--TFAPQSTYQTEQTYQQPAAQEPLYQQPQPV----E 485
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907070847  523 PEPTTPKEP--EPTTPKEPEPTTPKEPEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPKEPEPTTPKKP 587
Cdd:PRK10263   486 QQPVVEPEPvvEETKPARPPLYYFEEVEEKRAREREQLAAwYQPIPEPVKEPEPIKSSLKAPSVAAVP 553
PRK10263 PRK10263
DNA translocase FtsK; Provisional
380-595 1.13e-11

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 69.34  E-value: 1.13e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  380 EPTTPKEPEPTTPKEP-EPTTPKEPEPTtPKEPEPTTPKEPEPTTPkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKE 458
Cdd:PRK10263   338 EPVTQTPPVASVDVPPaQPTVAWQPVPG-PQTGEPVIAPAPEGYPQ-QSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQP 415
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  459 PEPTTPKEPEPTTPKEPEPTtlkePEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKE 538
Cdd:PRK10263   416 AQQPYYAPAPEQPAQQPYYA----PAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVE 491
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907070847  539 PEP----TTPKEPEPTTPKEPEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPKKPEPTTPKEP 595
Cdd:PRK10263   492 PEPvveeTKPARPPLYYFEEVEEKRAREREQLAAwYQPIPEPVKEPEPIKSSLKAPSVAAVP 553
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
323-644 9.33e-11

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 66.16  E-value: 9.33e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  323 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPttlKEPEPTTPKEPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKE 402
Cdd:PRK07764   415 AAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAP---AGGAPSPPPAAAPSAQPAPAPAAA--PEPTAAPAPAPPAAPA 489
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  403 PEPTTPKEPEPTTP------------------------------KEPEPT-----------------------TPKEPE- 428
Cdd:PRK07764   490 PAAAPAAPAAPAAPagaddaatlrerwpeilaavpkrsrktwaiLLPEATvlgvrgdtlvlgfstgglarrfaSPGNAEv 569
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  429 -------------------PTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEP-TTPKEPEPTTLKEPEPTTP 488
Cdd:PRK07764   570 lvtalaeelggdwqveavvGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPaGAAAAPAEASAAPAPGVAA 649
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  489 KEPEPTTLKEPEPTTPKEPEPtttkePESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 568
Cdd:PRK07764   650 PEHHPKHVAVPDASDGGDGWP-----AKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQA 724
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070847  569 KEPEPTTPKEPEPTTPKKPEPTTPKEPEPtTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTP---KEPEPTTPKEPE 644
Cdd:PRK07764   725 AQGASAPSPAADDPVPLPPEPDDPPDPAG-APAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEddaPSMDDEDRRDAE 802
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
322-645 9.65e-11

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 66.16  E-value: 9.65e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  322 EPEPT-TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTlkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPkePEPTTP 400
Cdd:PRK07764   405 APAAApAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPS---PAGNAPAGGAPSPPPAAAPSAQPAPAPAAA--PEPTAA 479
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  401 KEPEPTTPKEPEPTTPKEPEPTTP------------------------------KEPEPT-------------------- 430
Cdd:PRK07764   480 PAPAPPAAPAPAAAPAAPAAPAAPagaddaatlrerwpeilaavpkrsrktwaiLLPEATvlgvrgdtlvlgfstgglar 559
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  431 ---TPKEPE--------------------PTTPKEPEPTTPKEPEPttlKEPEPTTPKEPEPTTPKEPEPTtlkePEPTT 487
Cdd:PRK07764   560 rfaSPGNAEvlvtalaeelggdwqveavvGPAPGAAGGEGPPAPAS---SGPPEEAARPAAPAAPAAPAAP----APAGA 632
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  488 PKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKE---PEPTTPKEPEPTTPKEPEPTTPKEPE 564
Cdd:PRK07764   633 AAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPapaPAAPAAPAGAAPAQPAPAPAATPPAG 712
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  565 PTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPE 644
Cdd:PRK07764   713 QADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPS 792

                   .
gi 1907070847  645 P 645
Cdd:PRK07764   793 M 793
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
368-609 1.69e-10

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 64.95  E-value: 1.69e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  368 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEptTPKEPEPTTPKEPEPTTPKEP-EPTTPKEPEPTTPKEPEPT----TPKE 442
Cdd:PLN03209   330 PKESDAADGPKPVPTKPVTPEAPSPPIEE--EPPQPKAVVPRPLSPYTAYEDlKPPTSPIPTPPSSSPASSKsvdaVAKP 407
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  443 PEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKE 522
Cdd:PLN03209   408 AEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAA 487
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  523 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTP--KEPEPTTP 600
Cdd:PLN03209   488 APPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKPRPLSPytMYEDLKPP 567

                   ....*....
gi 1907070847  601 KEPEPTTPK 609
Cdd:PLN03209   568 TSPTPSPVL 576
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
320-628 3.94e-10

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 64.24  E-value: 3.94e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  320 RKEPEPTTPKEPEPTTPkepEPTTPKEPEPTTPKEPEPTtlKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 399
Cdd:PRK07764   428 APQPAPAPAPAPAPPSP---AGNAPAGGAPSPPPAAAPS--AQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAA 502
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  400 P------------------------------KEPEPT-----------------------TPKEPE-------------- 412
Cdd:PRK07764   503 PagaddaatlrerwpeilaavpkrsrktwaiLLPEATvlgvrgdtlvlgfstgglarrfaSPGNAEvlvtalaeelggdw 582
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  413 ------PTTPKEPEPTTPKEPEPTTPKE--PEPTTPKEPEPTTPKEPEPTTlKEPEPTTPKEPEPTTPKEPEPTTLKEPE 484
Cdd:PRK07764   583 qveavvGPAPGAAGGEGPPAPASSGPPEeaARPAAPAAPAAPAAPAPAGAA-AAPAEASAAPAPGVAAPEHHPKHVAVPD 661
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  485 PTTPKEPEPTTLKEPEPTTPKEPEPtttkePESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 564
Cdd:PRK07764   662 ASDGGDGWPAKAGGAAPAAPPPAPA-----PAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAAD 736
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070847  565 PTTPKEPEPTTPKEPEPtTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP---KEPEPTTRKEPE 628
Cdd:PRK07764   737 DPVPLPPEPDDPPDPAG-APAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEddaPSMDDEDRRDAE 802
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
416-605 5.37e-10

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 63.44  E-value: 5.37e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  416 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTlkEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTT 495
Cdd:PRK14948   363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAAT--TPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLN 440
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  496 LKEPEPTTPKEPEPTTTK------------EPESTT-----------------------------------RKEPEPTTP 528
Cdd:PRK14948   441 LEELWQQILAKLELPSTRmllsqqaelvslDSNRAViavspnwlgmvqsrkplleqafakvlgrsiklnleSQSGSASNT 520
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070847  529 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKePEPTTPKEPEP 605
Cdd:PRK14948   521 AKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPT-PSPTKDSSPEE 596
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
400-581 5.42e-10

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 63.44  E-value: 5.42e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  400 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPkePEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTT 479
Cdd:PRK14948   363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATT--PSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLN 440
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  480 LKE---------PEPTT-------------------------------PKEPEPTT---------------LKEPEPTTP 504
Cdd:PRK14948   441 LEElwqqilaklELPSTrmllsqqaelvsldsnraviavspnwlgmvqSRKPLLEQafakvlgrsiklnleSQSGSASNT 520
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070847  505 KEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKePEPTTPKEPEP 581
Cdd:PRK14948   521 AKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPT-PSPTKDSSPEE 596
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
325-648 5.49e-10

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 63.47  E-value: 5.49e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  325 PTTPKEPEPTTPKEPEPTTPKEPEPTtPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPkepEPTTPKEPEPTTPKEPE 404
Cdd:PRK07764   386 GVAGGAGAPAAAAPSAAAAAPAAAPA-PAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSP---AGNAPAGGAPSPPPAAA 461
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  405 PTTPKEPEPTTPkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTP------------------------------KEPEPT 454
Cdd:PRK07764   462 PSAQPAPAPAAA--PEPTAAPAPAPPAAPAPAAAPAAPAAPAAPagaddaatlrerwpeilaavpkrsrktwaiLLPEAT 539
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  455 ---------TLKEPEP----------------------------------TTPKEPEPTTPKEPE----PTTLKEPEPTT 487
Cdd:PRK07764   540 vlgvrgdtlVLGFSTGglarrfaspgnaevlvtalaeelggdwqveavvgPAPGAAGGEGPPAPAssgpPEEAARPAAPA 619
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  488 PKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 567
Cdd:PRK07764   620 APAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPA 699
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  568 PKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEP-------TTPKEPEPTTRKEPEPTTPKEPEPTTP 640
Cdd:PRK07764   700 QPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPddppdpaGAPAQPPPPPAPAPAAAPAAAPPPSPP 779

                   ....*...
gi 1907070847  641 KEPEPTTP 648
Cdd:PRK07764   780 SEEEEMAE 787
PHA03378 PHA03378
EBNA-3B; Provisional
358-689 6.89e-10

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 63.55  E-value: 6.89e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  358 TTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTtPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 437
Cdd:PHA03378   522 ATLLPPSPPQPRAGRRAPCVYTEDLDIESDEPASTEPVHDQLLPAPGLG-PLQIQPLTSPTTSQLASSAPSYAQTPWPVP 600
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  438 TTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEP---EPTTLKEPEPTTPKEPEPTTTKE 514
Cdd:PHA03378   601 HPSQTPEPPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFPTPHQPpqvEITPYKPTWTQIGHIPYQPSPTG 680
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  515 PESTTRKEPEPTTPKEPepttPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKE 594
Cdd:PHA03378   681 ANTMLPIQWAPGTMQPP----PRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARP 756
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  595 PEPT-TPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVT 673
Cdd:PHA03378   757 PAAApGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPTKQILRQLLTGGVKRG 836
                          330
                   ....*....|....*.
gi 1907070847  674 APAEEIQNKPEETTPA 689
Cdd:PHA03378   837 RPSLKKPAALERQAAA 852
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
376-565 7.57e-10

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 63.06  E-value: 7.57e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  376 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 455
Cdd:PRK14948   363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATT--PSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLN 440
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  456 LKE---------PEPTT-------------------------------PKEPEPTTPKEP---EPTTL----KEPEPTTP 488
Cdd:PRK14948   441 LEElwqqilaklELPSTrmllsqqaelvsldsnraviavspnwlgmvqSRKPLLEQAFAKvlgRSIKLnlesQSGSASNT 520
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070847  489 KEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKePEPTTPKEPEP 565
Cdd:PRK14948   521 AKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPT-PSPTKDSSPEE 596
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
333-698 7.78e-10

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 63.08  E-value: 7.78e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  333 PTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 412
Cdd:PRK07764   386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQ 465
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  413 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTP----------------KEPEPtTPKEPE 476
Cdd:PRK07764   466 PAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRERWPeilaavpkrsrktwaiLLPEA-TVLGVR 544
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  477 PTTL----------------KEPE--------------------PTTPKEPEPTTLKEPEPTTPKE--PEPTTTKEPEST 518
Cdd:PRK07764   545 GDTLvlgfstgglarrfaspGNAEvlvtalaeelggdwqveavvGPAPGAAGGEGPPAPASSGPPEeaARPAAPAAPAAP 624
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  519 TRKEPePTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE-PEPTTPKKPEPTTPKEPEP 597
Cdd:PRK07764   625 AAPAP-AGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPaPAPAAPAAPAGAAPAQPAP 703
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  598 TTPKEPEPTTPKEPEPTTPKEPEPTTRKePEPTTPKEPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAE 677
Cdd:PRK07764   704 APAATPPAGQADDPAAQPPQAAQGASAP-SPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEE 782
                          410       420
                   ....*....|....*....|.
gi 1907070847  678 EIQNKPEETTPASEDSDDSKT 698
Cdd:PRK07764   783 EEMAEDDAPSMDDEDRRDAEE 803
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
344-522 7.92e-10

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 62.96  E-value: 7.92e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  344 PKEPEPTTPKEPEPTTlkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 423
Cdd:PRK07994   361 PAAPLPEPEVPPQSAA---PAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATK 437
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  424 PKEPEPTTPKEPEPTtPKEPEPTTPKEPEPTTLkePEPTTPKEPEPTTPKEPEPTtlKEPEPTTPKEPEPTTLKEpeptt 503
Cdd:PRK07994   438 AKKSEPAAASRARPV-NSALERLASVRPAPSAL--EKAPAKKEAYRWKATNPVEV--KKEPVATPKALKKALEHE----- 507
                          170
                   ....*....|....*....
gi 1907070847  504 pKEPEPTTTKEPESTTRKE 522
Cdd:PRK07994   508 -KTPELAAKLAAEAIERDP 525
PRK10263 PRK10263
DNA translocase FtsK; Provisional
460-648 9.61e-10

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 63.18  E-value: 9.61e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  460 EPTTPKEPEPTTPKEP-EPTTLKEPEPTtPKEPEPTTLKEPEPTTPkEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKE 538
Cdd:PRK10263   338 EPVTQTPPVASVDVPPaQPTVAWQPVPG-PQTGEPVIAPAPEGYPQ-QSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQP 415
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  539 PE----PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPttPKEPEPT---TPKKPEPTTPKEPE-PTTPKEPEPTTPKE 610
Cdd:PRK10263   416 AQqpyyAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQS--TFAPQSTyqtEQTYQQPAAQEPLYqQPQPVEQQPVVEPE 493
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*....
gi 1907070847  611 P--EPTTPKEP---------EPTTRKEPEPTTPKEPEPTTPKEPEPTTP 648
Cdd:PRK10263   494 PvvEETKPARPplyyfeeveEKRAREREQLAAWYQPIPEPVKEPEPIKS 542
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
336-485 1.19e-09

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 62.19  E-value: 1.19e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  336 PKEPEPTTPKEPEPTTPKEPEPTTlkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 415
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQAT---AAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATK 437
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907070847  416 PKEPEPTTPKEPEPTtPKEPEPTTPKEPEPTT----PKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEP 485
Cdd:PRK07994   438 AKKSEPAAASRARPV-NSALERLASVRPAPSAlekaPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTP 510
Hemopexin pfam00045
Hemopexin; Hemopexin is a heme-binding protein that transports heme to the liver. ...
882-919 1.45e-09

Hemopexin; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metallopeptidases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metallopeptidases (TIMPs).


Pssm-ID: 395000 [Multi-domain]  Cd Length: 44  Bit Score: 54.49  E-value: 1.45e-09
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 1907070847  882 IDTVFTRCNceGKTFFFKDSQYWRFTNDVVDPGYPKQI 919
Cdd:pfam00045    1 IDAAFEDRD--GKTYFFKGRKYWRFDPQRVEPGYPKLI 36
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
323-648 1.54e-09

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 62.50  E-value: 1.54e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  323 PEPTTPKEPEPTTPKEPEPTTpkePEPTTPKEPEPTTLKEPEPTTPKEPEPttpkePEPTTPKEPEPTTPKEPEPTTPKE 402
Cdd:PHA03307   100 PAREGSPTPPGPSSPDPPPPT---PPPASPPPSPAPDLSEMLRPVGSPGPP-----PAASPPAAGASPAAVASDAASSRQ 171
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  403 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKE 482
Cdd:PHA03307   172 AALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGP 251
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  483 PEPTTPKEPEPTTLKEP--EPTTPKEPEPTTTKEPESTTRKEPEPttpkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 560
Cdd:PHA03307   252 ENECPLPRPAPITLPTRiwEASGWNGPSSRPGPASSSSSPRERSP----SPSPSSPGSGPAPSSPRASSSSSSSRESSSS 327
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  561 KePEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP--TTRKEPEPTTPKEPEPT 638
Cdd:PHA03307   328 S-TSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRrrARAAVAGRARRRDATGR 406
                          330
                   ....*....|
gi 1907070847  639 TPKEPEPTTP 648
Cdd:PHA03307   407 FPAGRPRPSP 416
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
378-759 1.60e-09

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 411408 [Multi-domain]  Cd Length: 557  Bit Score: 61.71  E-value: 1.60e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  378 EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLK 457
Cdd:NF033839   158 KPETPQPENPEHQKPTTPAPDTKPSPQPEGKKPSVPDINQEKEKAKL-AVATYMSKILDDIQKHHLQKEKHRQIVALIKE 236
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  458 EPEPTTPKEPEPTTPK-EPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTP 536
Cdd:NF033839   237 LDELKKQALSEIDNVNtKVEIENTVHKIFADMDAVVTKFKKGLTQDTPKEPGNKKPSAPKPGMQPSPQPEKKEVKPEPET 316
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  537 KEPEpTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK-KPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 615
Cdd:NF033839   317 PKPE-VKPQLEKPKPEVKPQPEKPKPEVKPQLETPKPEVKPQPEKPKPEvKPQPEKPKPEVKPQPETPKPEVKPQPEKPK 395
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  616 PK-EPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTaPAEEIQNKPEETTPASEDSD 694
Cdd:NF033839   396 PEvKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVK-PQPETPKPEVKPQPEKPKPE 474
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907070847  695 DSKTTLKPQKPTKAPKPTKKPTKAPKKPTSTKKPKTPKTRKPKTTPSPLKTTSATPELNTTPLEV 759
Cdd:NF033839   475 VKPQPEKPKPDNSKPQADDKKPSTPNNLSKDKQPSNQASTNEKATNKPKKSLPSTGSISNLALEI 539
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
416-648 1.67e-09

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 61.87  E-value: 1.67e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  416 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEptTPKEPEPTTLKEPEPTTPKEP-EPTTPKEPEPTTLKEPEPTtpkePEPT 494
Cdd:PLN03209   330 PKESDAADGPKPVPTKPVTPEAPSPPIEE--EPPQPKAVVPRPLSPYTAYEDlKPPTSPIPTPPSSSPASSK----SVDA 403
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  495 TLKEPEPTTPKEPEPTTT---KEPESTTRKEPEPTTP--KEPEPTTPKEPEPTTPKEPEPTTPKepEPTTPKEPEPTTPK 569
Cdd:PLN03209   404 VAKPAEPDVVPSPGSASNvpeVEPAQVEAKKTRPLSPyaRYEDLKPPTSPSPTAPTGVSPSVSS--TSSVPAVPDTAPAT 481
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070847  570 EPEPTTPKEPEPTTPKKPEPTTPKEPEPTTpkePEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTP 648
Cdd:PLN03209   482 AATDAAAPPPANMRPLSPYAVYDDLKPPTS---PSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKPRPLSP 557
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
371-538 3.37e-09

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 61.03  E-value: 3.37e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  371 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP-KEPEPTTPKEPEPTTP--KEPEPTTPKEPEPTT 447
Cdd:PRK07994   366 PEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPaVPLPETTSQLLAARQQlqRAQGATKAKKSEPAA 445
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  448 PKEPEPTTlKEPEPTTPKEPEPTTPkePEPTTLKEPEPTTPKEPEPTtlKEPEPTTPKEPEPTTTKEpesttrKEPEPTT 527
Cdd:PRK07994   446 ASRARPVN-SALERLASVRPAPSAL--EKAPAKKEAYRWKATNPVEV--KKEPVATPKALKKALEHE------KTPELAA 514
                          170
                   ....*....|.
gi 1907070847  528 PKEPEPTTPKE 538
Cdd:PRK07994   515 KLAAEAIERDP 525
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
540-626 3.49e-09

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 60.97  E-value: 3.49e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  540 EPTTPKEPEPTTPKEPEPTTPKepepttPKEPEPTTPKEPEPTTPKKPEPTtPKEPEPTTPKEPEPTTPKEPEPTTPKEP 619
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVIPD------PVDPDPVDPVIPDPVIPDPVDPD-PVDPEPVDPVIPDPTIPDIGQSDTPPIT 631

                   ....*..
gi 1907070847  620 EPTTRKE 626
Cdd:PRK15313   632 EHQFRPE 638
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
440-621 4.95e-09

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 60.36  E-value: 4.95e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  440 PKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTlkEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTT 519
Cdd:PRK14948   363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAAT--TPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLN 440
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  520 RKE---------PEPTT-------------------------------PKEPEPTTP---------------KEPEPTTP 544
Cdd:PRK14948   441 LEElwqqilaklELPSTrmllsqqaelvsldsnraviavspnwlgmvqSRKPLLEQAfakvlgrsiklnlesQSGSASNT 520
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070847  545 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKePEPTTPKEPEP 621
Cdd:PRK14948   521 AKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPT-PSPTKDSSPEE 596
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
453-648 6.41e-09

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 59.89  E-value: 6.41e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  453 PTTLKEPEPTTPKEPEPTTPKEPEPTTlkePEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPE 532
Cdd:PRK12323   375 ATAAAAPVAQPAPAAAAPAAAAPAPAA---PPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  533 PTTPKEPEPTTP---KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEP--TTPKEPEPTTPKEPEPTT 607
Cdd:PRK12323   452 PAPAAAPAAAARpaaAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPaqPDAAPAGWVAESIPDPAT 531
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|...
gi 1907070847  608 PKEPEPTTPKEPEPTTRKEPEPTTPKEPE--PTTPKEPEPTTP 648
Cdd:PRK12323   532 ADPDDAFETLAPAPAAAPAPRAAAATEPVvaPRPPRASASGLP 574
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
322-648 7.05e-09

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 60.18  E-value: 7.05e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  322 EPEPTTPKEPEPTT--PKEPEPTTPKEPEPTTPKEPEPTtlKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 399
Cdd:PHA03307   107 TPPGPSSPDPPPPTppPASPPPSPAPDLSEMLRPVGSPG--PPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETAR 184
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  400 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTT 479
Cdd:PHA03307   185 APSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPIT 264
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  480 LKEP--EPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTpkepeP 557
Cdd:PHA03307   265 LPTRiwEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRG-----A 339
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  558 TTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEP--TTPKEPEPTTPKE-PEPTTRKEPEPTTPKE 634
Cdd:PHA03307   340 AVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRrrARAAVAGRARRRDaTGRFPAGRPRPSPLDA 419
                          330
                   ....*....|....
gi 1907070847  635 PEptTPKEPEPTTP 648
Cdd:PHA03307   420 GA--ASGAFYARYP 431
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
323-648 7.56e-09

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 60.00  E-value: 7.56e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  323 PEPTTPKEPEPTtPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPKEPEPTTPk 401
Cdd:PRK07764   396 AAAPSAAAAAPA-AAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNApAGGAPSPPPAAAPSAQPAPAPAAA- 473
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  402 ePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP-------------TTPKEPEPTTP-KEPEPT---------TLKE 458
Cdd:PRK07764   474 -PEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDaatlrerwpeilaAVPKRSRKTWAiLLPEATvlgvrgdtlVLGF 552
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  459 PEP----------------------------------TTPKEPEPTTPKEPEPTTLKE--PEPTTPKEPEPTtlkePEPT 502
Cdd:PRK07764   553 STGglarrfaspgnaevlvtalaeelggdwqveavvgPAPGAAGGEGPPAPASSGPPEeaARPAAPAAPAAP----AAPA 628
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  503 TPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKEPEPT 582
Cdd:PRK07764   629 PAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPA--PAAPAAPAGAAPAQPAPAPA 706
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070847  583 TPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTP 648
Cdd:PRK07764   707 ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAA 772
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
524-613 8.09e-09

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 59.81  E-value: 8.09e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  524 EPTTPKEPEPTTPKEPEPTTPKepepttPKEPEPTTPKEPEPTTPKEPEPtTPKEPEPTTPKKPEPTTPKEPEPTTPkep 603
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVIPD------PVDPDPVDPVIPDPVIPDPVDP-DPVDPEPVDPVIPDPTIPDIGQSDTP--- 628
                           90
                   ....*....|
gi 1907070847  604 ePTTPKEPEP 613
Cdd:PRK15313   629 -PITEHQFRP 637
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
364-453 9.43e-09

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 59.81  E-value: 9.43e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  364 EPTTPKEPEPTTPKEPEPTTPKepepttPKEPEPTTPKEPEPTTPKEPEPTtPKEPEPTTPKEPEPTTPKEPEPTTPkep 443
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVIPD------PVDPDPVDPVIPDPVIPDPVDPD-PVDPEPVDPVIPDPTIPDIGQSDTP--- 628
                           90
                   ....*....|
gi 1907070847  444 ePTTPKEPEP 453
Cdd:PRK15313   629 -PITEHQFRP 637
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
317-648 1.42e-08

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 59.03  E-value: 1.42e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  317 STTRKEPEPTTPKEPEPTTPKE--PEPTTPKEPEPTTPKEPEPTTLKEPE----PTTPKEPEPTTPKEPEPTTPKEPEPT 390
Cdd:PHA03307   112 SSPDPPPPTPPPASPPPSPAPDlsEMLRPVGSPGPPPAASPPAAGASPAAvasdAASSRQAALPLSSPEETARAPSSPPA 191
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  391 TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEP--E 468
Cdd:PHA03307   192 EPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRiwE 271
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  469 PTTPKEPEPTTLKEPEPTTPKEPEPttlkEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKePEPTTPKEPEPTTPKEPE 548
Cdd:PHA03307   272 ASGWNGPSSRPGPASSSSSPRERSP----SPSPSSPGSGPAPSSPRASSSSSSSRESSSSS-TSSSSESSRGAAVSPGPS 346
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  549 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEP--TTPKEPEPTTPKEPEPTTPKEPEPTTPkepePTTRKE 626
Cdd:PHA03307   347 PSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRrrARAAVAGRARRRDATGRFPAGRPRPSP----LDAGAA 422
                          330       340
                   ....*....|....*....|..
gi 1907070847  627 PEPTTPKEPEPTTPKEPEPTTP 648
Cdd:PHA03307   423 SGAFYARYPLLTPSGEPWPGSP 444
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
532-621 1.78e-08

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 58.66  E-value: 1.78e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  532 EPTTPKEPEPTTPKEPEPTTPKepepttPKEPEPTTPKEPEPTTPKEPEPtTPKKPEPTTPKEPEPTTPKEPEPTTPkep 611
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVIPD------PVDPDPVDPVIPDPVIPDPVDP-DPVDPEPVDPVIPDPTIPDIGQSDTP--- 628
                           90
                   ....*....|
gi 1907070847  612 ePTTPKEPEP 621
Cdd:PRK15313   629 -PITEHQFRP 637
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
384-554 1.94e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 58.34  E-value: 1.94e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  384 PKEPEPTTPKEPEPTTPKEPEPTTPkepEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTT 463
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATA---APTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATK 437
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  464 PKEPEPTTPKEPEPTTlKEPEPTTPKEPEPTTLkePEPTTPKEPEPTTTKEPESTtrKEPEPTTPKEPEP--TTPKEPEP 541
Cdd:PRK07994   438 AKKSEPAAASRARPVN-SALERLASVRPAPSAL--EKAPAKKEAYRWKATNPVEV--KKEPVATPKALKKalEHEKTPEL 512
                          170
                   ....*....|...
gi 1907070847  542 TTPKEPEPTTPKE 554
Cdd:PRK07994   513 AAKLAAEAIERDP 525
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
405-608 2.10e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 58.35  E-value: 2.10e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  405 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTtlkEPEPTTPKEPEPTTPKEPEPTTLKEPE 484
Cdd:PRK12323   375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA---RRSPAPEALAAARQASARGPGGAPAPA 451
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  485 PTTPKEPEPTTlkepePTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEP--TTPKEPEPTTPKE 562
Cdd:PRK12323   452 PAPAAAPAAAA-----RPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPaqPDAAPAGWVAESI 526
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*...
gi 1907070847  563 PEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPE--PTTPKEPEPTTP 608
Cdd:PRK12323   527 PDPATADPDDAFETLAPAPAAAPAPRAAAATEPVvaPRPPRASASGLP 574
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
464-634 2.33e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 57.95  E-value: 2.33e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  464 PKEPEPTTPKEPEPTTlkepePTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTP--KEPEP 541
Cdd:PRK07994   361 PAAPLPEPEVPPQSAA-----PAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQlqRAQGA 435
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  542 TTPKEPEPTTPKEPEPTtPKEPEPTTPKEPEPTTPKEPepttPKKPEPTTPKEPEPTTPKEPEPTTPKEPEP--TTPKEP 619
Cdd:PRK07994   436 TKAKKSEPAAASRARPV-NSALERLASVRPAPSALEKA----PAKKEAYRWKATNPVEVKKEPVATPKALKKalEHEKTP 510
                          170
                   ....*....|....*
gi 1907070847  620 EPTTRKEPEPTTPKE 634
Cdd:PRK07994   511 ELAAKLAAEAIERDP 525
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
328-601 2.47e-08

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 58.42  E-value: 2.47e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  328 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTtlKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 407
Cdd:NF033845   543 PKDPTPGPPVDPEPSPEPEPEPTPDPEPSPD--PDPEPSPDPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDSDS 620
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  408 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTT 487
Cdd:NF033845   621 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 700
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  488 PKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 567
Cdd:NF033845   701 SSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 780
                          250       260       270
                   ....*....|....*....|....*....|....
gi 1907070847  568 PKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPK 601
Cdd:NF033845   781 DSDSDSDSDSDSDSDSDSRVTPPNNEQKAPSNPK 814
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
325-523 2.60e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 57.96  E-value: 2.60e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  325 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTlkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 404
Cdd:PRK12323   375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAA---PAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  405 PTTPKEPEPTTP---KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEP--TTPKEPEPTTPKEPEPTT 479
Cdd:PRK12323   452 PAPAAAPAAAARpaaAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPaqPDAAPAGWVAESIPDPAT 531
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....
gi 1907070847  480 LKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEP 523
Cdd:PRK12323   532 ADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPD 575
rne PRK10811
ribonuclease E; Reviewed
373-544 2.66e-08

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 58.13  E-value: 2.66e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  373 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTpkEPEPTTPKEPEPTTpkEPEPTTPKEPEPTTPkEPE 452
Cdd:PRK10811   846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVA--EPQPEEVVVVETTHP-EVI 920
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  453 PTTLKEPEPTTPKEPEPTTPKEPEpttlkEPEPTTPKEPEPTTLKEPEPTTPKEP-EPTTTKEPESTTRKEPEPTTPKEP 531
Cdd:PRK10811   921 AAPVTEQPQVITESDVAVAQEVAE-----HAEPVVEPQDETADIEEAAETAEVVVaEPEVVAQPAAPVVAEVAAEVETVT 995
                          170
                   ....*....|...
gi 1907070847  532 EPTTPKEPEPTTP 544
Cdd:PRK10811   996 AVEPEVAPAQVPE 1008
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
448-626 2.67e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 57.95  E-value: 2.67e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  448 PKEPEPTTlkePEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTT 527
Cdd:PRK07994   361 PAAPLPEP---EVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATK 437
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  528 PKEPEPTTPKEPEPtTPKEPEPTTPKEPEPTTPKEPepttPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEpeptt 607
Cdd:PRK07994   438 AKKSEPAAASRARP-VNSALERLASVRPAPSALEKA----PAKKEAYRWKATNPVEVKKEPVATPKALKKALEHE----- 507
                          170
                   ....*....|....*....
gi 1907070847  608 pKEPEPTTPKEPEPTTRKE 626
Cdd:PRK07994   508 -KTPELAAKLAAEAIERDP 525
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
328-569 3.00e-08

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 57.63  E-value: 3.00e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  328 PKEPEPTTPKEPEPTTPKepePTTPKEPEPTTLKEPEPTTPKEPEPTTP-------KEPEPTTPKEPEPTTPKEPEPTT- 399
Cdd:PLN03209   328 VPPKESDAADGPKPVPTK---PVTPEAPSPPIEEEPPQPKAVVPRPLSPytayedlKPPTSPIPTPPSSSPASSKSVDAv 404
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  400 --PKEPEPTTPKEPEPTTP-KEPEPTTPKEPEPTTP--KEPEPTTPKEPEPTTPKEPEPTTLKepEPTTPKEPEPTTPKE 474
Cdd:PLN03209   405 akPAEPDVVPSPGSASNVPeVEPAQVEAKKTRPLSPyaRYEDLKPPTSPSPTAPTGVSPSVSS--TSSVPAVPDTAPATA 482
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  475 PEPTTLKEPEPTTPKEPEPTTLKEPEPTTpkePEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP-- 552
Cdd:PLN03209   483 ATDAAAPPPANMRPLSPYAVYDDLKPPTS---PSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKPRPLSPyt 559
                          250
                   ....*....|....*..
gi 1907070847  553 KEPEPTTPKEPEPTTPK 569
Cdd:PLN03209   560 MYEDLKPPTSPTPSPVL 576
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
323-498 3.17e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 57.67  E-value: 3.17e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  323 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTlkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 402
Cdd:PRK14948   366 SEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAAT--TPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLNLEE 443
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  403 ---------PEPTT------------------------------------------------------PKEPEPTTPKEP 419
Cdd:PRK14948   444 lwqqilaklELPSTrmllsqqaelvsldsnraviavspnwlgmvqsrkplleqafakvlgrsiklnleSQSGSASNTAKT 523
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070847  420 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTlkePEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKE 498
Cdd:PRK14948   524 PPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTA---TQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSSPEEIDK 599
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
432-610 3.22e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 57.57  E-value: 3.22e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  432 PKEPEPTTPKEPEPTTPKEPEPTTlkePEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTT 511
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQAT---AAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATK 437
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  512 TKEPESTTRKEPEPtTPKEPEPTTPKEPEPTTPKEPepttPKEPEPTTPKEPEPTTPKEPEPTTPKEPepttpkKPEPTT 591
Cdd:PRK07994   438 AKKSEPAAASRARP-VNSALERLASVRPAPSALEKA----PAKKEAYRWKATNPVEVKKEPVATPKAL------KKALEH 506
                          170
                   ....*....|....*....
gi 1907070847  592 PKEPEPTTPKEPEPTTPKE 610
Cdd:PRK07994   507 EKTPELAAKLAAEAIERDP 525
PHA03247 PHA03247
large tegument protein UL36; Provisional
344-631 3.43e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 58.03  E-value: 3.43e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  344 PKEPEPTTPKEPEPTTLK-EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP---KEPEPTTPKEPEPTTPKEP 419
Cdd:PHA03247   206 PSGPGPAAPADLTAAALHlYGASETYLQDEPFVERRVVISHPLRGDIAAPAPPPVVGEgadRAPETARGATGPPPPPEAA 285
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  420 EPTTPKEPEP---------TTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKePEPTTPKEPEPTTLKEPEPTTPKE 490
Cdd:PHA03247   286 APNGAAAPPDgvwgaalagAPLALPAPPDPPPPAPAGDAEEEDDEDGAMEVVSPL-PRPRQHYPLGFPKRRRPTWTPPSS 364
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  491 PEPTTLKEPEPttPKEPEPTTTKEpesTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPepttpkEPEPTTPKE 570
Cdd:PHA03247   365 LEDLSAGRHHP--KRASLPTRKRR---SARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVP------ASAPPPPAT 433
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907070847  571 PEPTtpkePEPTTPKKPEPTtpkePEPTTPKEPEPTTPKEPEPTTPKEPEP-TTRKEPEPTT 631
Cdd:PHA03247   434 PLPS----AEPGSDDGPAPP----PERQPPAPATEPAPDDPDDATRKALDAlRERRPPEPPG 487
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
371-459 3.54e-08

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 57.98  E-value: 3.54e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  371 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEpttPKE 450
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAA---AVE 114

                   ....*....
gi 1907070847  451 PEPTTLKEP 459
Cdd:PRK12270   115 DEVTPLRGA 123
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
421-616 3.59e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 57.58  E-value: 3.59e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  421 PTTPKEPEPTTPKEPEPTTPKEPEPTTPkEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTtlKEPE 500
Cdd:PRK12323   375 ATAAAAPVAQPAPAAAAPAAAAPAPAAP-PAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGA--PAPA 451
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  501 PTTPKEPEPTT---TKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP--TTPKEPEPTTPKEPEPTT 575
Cdd:PRK12323   452 PAPAAAPAAAArpaAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPaqPDAAPAGWVAESIPDPAT 531
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|...
gi 1907070847  576 PKEPEPTTPKKPEPTTPKEPEPTTPKEPE--PTTPKEPEPTTP 616
Cdd:PRK12323   532 ADPDDAFETLAPAPAAAPAPRAAAATEPVvaPRPPRASASGLP 574
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
357-568 3.66e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 57.58  E-value: 3.66e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  357 PTTLKEPEPTTPKEPEPTTPKEPEPTTPkepEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 436
Cdd:PRK12323   375 ATAAAAPVAQPAPAAAAPAAAAPAPAAP---PAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  437 PTTPKEPEPTTPKEPEPttlkePEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPE 516
Cdd:PRK12323   452 PAPAAAPAAAARPAAAG-----PRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESI 526
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1907070847  517 STTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPkepePTTPKEPEPTTP 568
Cdd:PRK12323   527 PDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVA----PRPPRASASGLP 574
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
400-570 3.76e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 57.57  E-value: 3.76e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  400 PKEPEPTTPKEPEPTTPKEPEPTTPkEPEPTTPKEPEPTTPKEPEPTTPKEPEPttlkEPEPTTPKEPEPTTP--KEPEP 477
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATA-APTAAVAPPQAPAVPPPPASAPQQAPAV----PLPETTSQLLAARQQlqRAQGA 435
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  478 TTLKEPEPTTPKEPEPTTlKEPEPTTPKEPEPTTTkePESTTRKEPEPTTPKEPEPTtpKEPEPTTPKEPEP--TTPKEP 555
Cdd:PRK07994   436 TKAKKSEPAAASRARPVN-SALERLASVRPAPSAL--EKAPAKKEAYRWKATNPVEV--KKEPVATPKALKKalEHEKTP 510
                          170
                   ....*....|....*
gi 1907070847  556 EPTTPKEPEPTTPKE 570
Cdd:PRK07994   511 ELAAKLAAEAIERDP 525
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
539-618 4.12e-08

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 57.59  E-value: 4.12e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  539 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 618
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
548-629 4.24e-08

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 57.50  E-value: 4.24e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  548 EPTTPKEPEPTTPKEPEPTTPKepepttPKEPEPTTPKKPEPTTPKEPEPtTPKEPEPTTPKEPEPTTP----KEPEPTT 623
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVIPD------PVDPDPVDPVIPDPVIPDPVDP-DPVDPEPVDPVIPDPTIPdigqSDTPPIT 631

                   ....*.
gi 1907070847  624 RKEPEP 629
Cdd:PRK15313   632 EHQFRP 637
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
564-648 4.35e-08

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 57.50  E-value: 4.35e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  564 EPTTPKEPEPTTPKEPEPTTPKkpepttPKEPEPTTPKEPEPTTPKepepttPKEPEPTtrkEPEPTTPKEPEPTTPKEP 643
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVIPD------PVDPDPVDPVIPDPVIPD------PVDPDPV---DPEPVDPVIPDPTIPDIG 623

                   ....*
gi 1907070847  644 EPTTP 648
Cdd:PRK15313   624 QSDTP 628
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
531-610 4.68e-08

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 57.59  E-value: 4.68e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  531 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKE 610
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
344-617 4.96e-08

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 57.26  E-value: 4.96e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  344 PKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPttpkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 423
Cdd:NF033845   543 PKDPTPGPPVDPEPSPEPEPEPTPDPEPSPDPDPEPSP----DPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDS 618
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  424 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTT 503
Cdd:NF033845   619 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 698
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  504 PKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 583
Cdd:NF033845   699 SDSSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 778
                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 1907070847  584 PKKPEPTTPKEPEPTTPKEPEPTTP--KEPEPTTPK 617
Cdd:NF033845   779 DSDSDSDSDSDSDSDSDSDSRVTPPnnEQKAPSNPK 814
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
499-645 5.03e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 57.18  E-value: 5.03e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  499 PEPTTPKEP-EPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP--KEPEPTTPKEPEPTT 575
Cdd:PRK07994   366 PEPEVPPQSaAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQlqRAQGATKAKKSEPAA 445
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  576 PKEPEPtTPKKPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKEPEPTtrKEPEPTTPKEPEPTTPKEPEP 645
Cdd:PRK07994   446 ASRARP-VNSALERLASVRPAPSAL--EKAPAKKEAYRWKATNPVEV--KKEPVATPKALKKALEHEKTP 510
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
332-421 5.24e-08

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 57.12  E-value: 5.24e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  332 EPTTPKEPEPTTPKEPEPTTPkepEPTtlkEPEPTTPKEPEPTTPKEPEPtTPKEPEPTTPKEPEPTTPKEPEPTTPkep 411
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVIP---DPV---DPDPVDPVIPDPVIPDPVDP-DPVDPEPVDPVIPDPTIPDIGQSDTP--- 628
                           90
                   ....*....|
gi 1907070847  412 ePTTPKEPEP 421
Cdd:PRK15313   629 -PITEHQFRP 637
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
340-429 5.24e-08

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 57.12  E-value: 5.24e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  340 EPTTPKEPEPTTPKEPEPTTlkePEPTtpkEPEPTTPKEPEPTTPKEPEPtTPKEPEPTTPKEPEPTTPKEPEPTTPkep 419
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVI---PDPV---DPDPVDPVIPDPVIPDPVDP-DPVDPEPVDPVIPDPTIPDIGQSDTP--- 628
                           90
                   ....*....|
gi 1907070847  420 ePTTPKEPEP 429
Cdd:PRK15313   629 -PITEHQFRP 637
rne PRK10811
ribonuclease E; Reviewed
319-515 5.29e-08

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 57.36  E-value: 5.29e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  319 TRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTlkEPEPTTPKEPEPTTpkEPEPTTPKEPEPTTPKEPEPT 398
Cdd:PRK10811   848 VRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVA--EPQPEEVVVVETTHPEVIAAP 923
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  399 TPKEPEPTTpkepEPTTPKEPEptTPKEPEPTTPKEPEPTTPKEPEPTTPKEP-EPTTLKEPEPTTPKEPEPTTPKEPep 477
Cdd:PRK10811   924 VTEQPQVIT----ESDVAVAQE--VAEHAEPVVEPQDETADIEEAAETAEVVVaEPEVVAQPAAPVVAEVAAEVETVT-- 995
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|
gi 1907070847  478 ttlKEPEPTTPKEPEPTTLKEPEPTTP--KEPEPTTTKEP 515
Cdd:PRK10811   996 ---AVEPEVAPAQVPEATVEHNHATAPmtRAPAPEYVPEA 1032
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
416-573 5.52e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 56.80  E-value: 5.52e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  416 PKEPEPTTPKEPEPTTPKEPEPTTPkepEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTT 495
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATA---APTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATK 437
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907070847  496 LKEPEPTTPKEPEPTTTkEPESTTRKEPEPTTPKEPepttPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 573
Cdd:PRK07994   438 AKKSEPAAASRARPVNS-ALERLASVRPAPSALEKA----PAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTP 510
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
368-641 5.63e-08

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 57.26  E-value: 5.63e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  368 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPttpkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 447
Cdd:NF033845   543 PKDPTPGPPVDPEPSPEPEPEPTPDPEPSPDPDPEPSP----DPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDS 618
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  448 PKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTT 527
Cdd:NF033845   619 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 698
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  528 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTT 607
Cdd:NF033845   699 SDSSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 778
                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 1907070847  608 PKEPEPTTPKEPEPTTRKEPEPTTP--KEPEPTTPK 641
Cdd:NF033845   779 DSDSDSDSDSDSDSDSDSDSRVTPPnnEQKAPSNPK 814
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
336-609 6.13e-08

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 56.88  E-value: 6.13e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  336 PKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPttpkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 415
Cdd:NF033845   543 PKDPTPGPPVDPEPSPEPEPEPTPDPEPSPDPDPEPSP----DPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDS 618
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  416 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTT 495
Cdd:NF033845   619 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 698
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  496 LKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 575
Cdd:NF033845   699 SDSSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 778
                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 1907070847  576 PKEPEPTTPKKPEPTTPKEPEPTTP--KEPEPTTPK 609
Cdd:NF033845   779 DSDSDSDSDSDSDSDSDSDSRVTPPnnEQKAPSNPK 814
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
476-695 6.76e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 56.64  E-value: 6.76e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  476 EPTTLKEPEPTTPKEPepTTLKEPEPTtpkePEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 555
Cdd:PRK08691   373 ENTELQSPSAQTAEKE--TAAKKPQPR----PEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPDEAQTA 446
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  556 EPTTPKePEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEpepttpkEPEPTTRKEPEPTTPKEP 635
Cdd:PRK08691   447 AGTAQT-SAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPIQATPND-------EAVETETFAHEAPAEPFY 518
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  636 EPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQNKPEETTPASEDSDD 695
Cdd:PRK08691   519 GYGFPDNDCPPEDGAEIPPPDWEHAAPADTAGGGADEEAEAGGIGGNNTPSAPPPEFSTE 578
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
504-646 6.78e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 56.80  E-value: 6.78e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  504 PKEPEPTTTKEPESTTrkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 583
Cdd:PRK07994   361 PAAPLPEPEVPPQSAA---PAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATK 437
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070847  584 PKKPEPTTPKEPEPtTPKEPEPTTPKEPEPTT----PKEPEPTTRKEPEPTTPKEPEPTTPKEPEPT 646
Cdd:PRK07994   438 AKKSEPAAASRARP-VNSALERLASVRPAPSAlekaPAKKEAYRWKATNPVEVKKEPVATPKALKKA 503
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
363-549 7.73e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 56.51  E-value: 7.73e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  363 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 442
Cdd:PRK14948   366 SEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATT--PSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLNLEE 443
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  443 ---------PEPTTPK-----------EPEPTTL------------KEPEPTTP---------------KEPEPTTPKEP 475
Cdd:PRK14948   444 lwqqilaklELPSTRMllsqqaelvslDSNRAVIavspnwlgmvqsRKPLLEQAfakvlgrsiklnlesQSGSASNTAKT 523
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907070847  476 EPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKePEPTTPKEPEP 549
Cdd:PRK14948   524 PPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPT-PSPTKDSSPEE 596
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
323-453 9.30e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 56.03  E-value: 9.30e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  323 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPtTPKEPEPTTPKE 402
Cdd:PRK07994   385 AAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARP-VNSALERLASVR 463
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1907070847  403 PEPTTPKEPepttPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 453
Cdd:PRK07994   464 PAPSALEKA----PAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTP 510
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
376-649 9.71e-08

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 56.49  E-value: 9.71e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  376 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPttpkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 455
Cdd:NF033845   543 PKDPTPGPPVDPEPSPEPEPEPTPDPEPSPDPDPEPSP----DPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDS 618
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  456 LKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTT 535
Cdd:NF033845   619 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 698
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  536 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 615
Cdd:NF033845   699 SDSSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 778
                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 1907070847  616 PKEPEPTTRKEPEPTTPKEPEPTTP--KEPEPTTPK 649
Cdd:NF033845   779 DSDSDSDSDSDSDSDSDSDSRVTPPnnEQKAPSNPK 814
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
324-405 1.03e-07

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 56.35  E-value: 1.03e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  324 EPTTPKEPEPTTPKEPEPTTPK--EPEPTTPKEPEPtTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPkepePTTPK 401
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVIPDpvDPDPVDPVIPDP-VIPDPVDPDPVDPEPVDPVIPDPTIPDIGQSDTP----PITEH 633

                   ....
gi 1907070847  402 EPEP 405
Cdd:PRK15313   634 QFRP 637
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
392-562 1.06e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 56.03  E-value: 1.06e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  392 PKEPEPTTPKEPEPTTPKEPEPTTPkepEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTT 471
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATA---APTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATK 437
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  472 PKEPEPTTLKEPEPtTPKEPEPTTLKEPEPTTPkEPEPtttKEPESTTRKEPEPTTPKEPEPTTPKEPEP--TTPKEPEP 549
Cdd:PRK07994   438 AKKSEPAAASRARP-VNSALERLASVRPAPSAL-EKAP---AKKEAYRWKATNPVEVKKEPVATPKALKKalEHEKTPEL 512
                          170
                   ....*....|...
gi 1907070847  550 TTPKEPEPTTPKE 562
Cdd:PRK07994   513 AAKLAAEAIERDP 525
rne PRK10811
ribonuclease E; Reviewed
381-555 1.06e-07

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 56.20  E-value: 1.06e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  381 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTpkEPEPTTPKEPEPTTPKEPEPTTPKE-PEPTTLKEP 459
Cdd:PRK10811   846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVAEPQPEEVVVVEtTHPEVIAAP 923
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  460 EPTTPKEPEPTTPKEPEPTTlKEPEPTTPKEPEPTTLKEPEPTtpkepEPTTTKEPESTTrkepEPTTPKEPEPTTPKEP 539
Cdd:PRK10811   924 VTEQPQVITESDVAVAQEVA-EHAEPVVEPQDETADIEEAAET-----AEVVVAEPEVVA----QPAAPVVAEVAAEVET 993
                          170
                   ....*....|....*.
gi 1907070847  540 EPTTPKEPEPTTPKEP 555
Cdd:PRK10811   994 VTAVEPEVAPAQVPEA 1009
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
523-602 1.09e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 56.44  E-value: 1.09e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  523 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKE 602
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
472-648 1.27e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 55.64  E-value: 1.27e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  472 PKEPEPTTLKEPEPTTPKEPEPTTlkePEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 551
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQAT---AAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATK 437
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  552 PKEPEPTTPKEPEPTtPKEPEPTTPKEPEPTTPKKPepttPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEpeptt 631
Cdd:PRK07994   438 AKKSEPAAASRARPV-NSALERLASVRPAPSALEKA----PAKKEAYRWKATNPVEVKKEPVATPKALKKALEHE----- 507
                          170
                   ....*....|....*..
gi 1907070847  632 pKEPEPTTPKEPEPTTP 648
Cdd:PRK07994   508 -KTPELAAKLAAEAIER 523
rne PRK10811
ribonuclease E; Reviewed
413-603 1.32e-07

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 55.82  E-value: 1.32e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  413 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTlkEPEPTTPKEPEPTTPKEPepttlkePEPTTPKEPE 492
Cdd:PRK10811   846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVAEPQP-------EEVVVVETTH 916
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  493 PTTLKEPEPTTPKEPEPTTTKEPESTTRkEPEPTTPKEPEPTTPKEPEPTT---PKEPEP-TTPKEPEPTTPKEPEPTTP 568
Cdd:PRK10811   917 PEVIAAPVTEQPQVITESDVAVAQEVAE-HAEPVVEPQDETADIEEAAETAevvVAEPEVvAQPAAPVVAEVAAEVETVT 995
                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 1907070847  569 KEPEPTTPKEPEPTTPKKPEPTTP--KEPEPTTPKEP 603
Cdd:PRK10811   996 AVEPEVAPAQVPEATVEHNHATAPmtRAPAPEYVPEA 1032
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
547-622 1.33e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 56.05  E-value: 1.33e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070847  547 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPT 622
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAV 113
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
420-637 1.33e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 55.87  E-value: 1.33e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  420 EPTTPKEPEPTTPKEPepTTPKEPEPTtpkePEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEP 499
Cdd:PRK08691   373 ENTELQSPSAQTAEKE--TAAKKPQPR----PEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPDEAQTA 446
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  500 EPTTPKepeptttkePESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPKE 578
Cdd:PRK08691   447 AGTAQT---------SAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPIQATPnDEAVETETFAHEAPAEPF 517
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  579 PEPTTPKKPEPttPKEPEPTTPKEPEPTTPKEP-EPTTPKEPEPTTRKEPEptTPKEPEP 637
Cdd:PRK08691   518 YGYGFPDNDCP--PEDGAEIPPPDWEHAAPADTaGGGADEEAEAGGIGGNN--TPSAPPP 573
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
321-593 1.36e-07

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 55.72  E-value: 1.36e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  321 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPttlkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 400
Cdd:NF033845   544 KDPTPGPPVDPEPSPEPEPEPTPDPEPSPDPDPEPSP----DPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDSD 619
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  401 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTL 480
Cdd:NF033845   620 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 699
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  481 KEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 560
Cdd:NF033845   700 DSSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 779
                          250       260       270
                   ....*....|....*....|....*....|....*
gi 1907070847  561 KEPEPTTPKEPEPTTPKEPEPTTPKKPE--PTTPK 593
Cdd:NF033845   780 SDSDSDSDSDSDSDSDSDSRVTPPNNEQkaPSNPK 814
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
363-442 1.48e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 55.67  E-value: 1.48e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  363 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 442
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
381-592 1.51e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 55.65  E-value: 1.51e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  381 PTTPKEPEPTTPKEPEPTTPKEPEPTTPkepEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPE 460
Cdd:PRK12323   375 ATAAAAPVAQPAPAAAAPAAAAPAPAAP---PAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  461 PTTPKEPEPTTP---KEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPEsttrkePEPTTPKEPEPTTPK 537
Cdd:PRK12323   452 PAPAAAPAAAARpaaAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPA------PAQPDAAPAGWVAES 525
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1907070847  538 EPEPTTPKEPEPTTPKEPEPTTPkePEPTTPKEPEPTTPkepePTTPKKPEPTTP 592
Cdd:PRK12323   526 IPDPATADPDDAFETLAPAPAAA--PAPRAAAATEPVVA----PRPPRASASGLP 574
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
437-640 1.52e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 55.65  E-value: 1.52e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  437 PTTPKEPEPTTPKEPEPTTLKEPEPTTPkepEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPE 516
Cdd:PRK12323   375 ATAAAAPVAQPAPAAAAPAAAAPAPAAP---PAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  517 STTRKEPEPTTP---KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP--TTPKEPEPTTPKKPEPTT 591
Cdd:PRK12323   452 PAPAAAPAAAARpaaAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPaqPDAAPAGWVAESIPDPAT 531
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*....
gi 1907070847  592 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTtrkepePTTPKEPEPTTP 640
Cdd:PRK12323   532 ADPDDAFETLAPAPAAAPAPRAAAATEPVVA------PRPPRASASGLP 574
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
320-495 1.53e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 55.65  E-value: 1.53e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  320 RKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP---KEPE 396
Cdd:PRK12323   391 APAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARpaaAGPR 470
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  397 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP--TTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKE 474
Cdd:PRK12323   471 PVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPaqPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPA 550
                          170       180
                   ....*....|....*....|...
gi 1907070847  475 PEPTTLKEPE--PTTPKEPEPTT 495
Cdd:PRK12323   551 PRAAAATEPVvaPRPPRASASGL 573
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
344-517 1.60e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 55.35  E-value: 1.60e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  344 PKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 423
Cdd:PRK14948   363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATT--PSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLN 440
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  424 PKE---------PEPTT------------------------------------------------------PKEPEPTTP 440
Cdd:PRK14948   441 LEElwqqilaklELPSTrmllsqqaelvsldsnraviavspnwlgmvqsrkplleqafakvlgrsiklnleSQSGSASNT 520
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070847  441 KEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTlKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPES 517
Cdd:PRK14948   521 AKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTA-TQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSSPEE 596
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
322-581 1.76e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 55.63  E-value: 1.76e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  322 EPEPTTPKEPEPTTPKEPEPTTPKePEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 401
Cdd:PRK07003   359 EPAVTGGGAPGGGVPARVAGAVPA-PGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATAD 437
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  402 EPEPTTPKePEPTTPKEPEPTTPKEPEPttPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPttlk 481
Cdd:PRK07003   438 RGDDAADG-DAPVPAKANARASADSRCD--ERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDA---- 510
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  482 EPEPTTPKEPEPTTLKEPEPTTPkEPEPTTTKEPE-------------------STTRKEPEPTTPKePEPTTPKEPEPT 542
Cdd:PRK07003   511 RAPAAASREDAPAAAAPPAPEAR-PPTPAAAAPAAraggaaaaldvlrnagmrvSSDRGARAAAAAK-PAAAPAAAPKPA 588
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|
gi 1907070847  543 TPKEPEPT-TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 581
Cdd:PRK07003   589 APRVAVQVpTPRARAATGDAPPNGAARAEQAAESRGAPPP 628
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
348-437 1.80e-07

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 55.58  E-value: 1.80e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  348 EPTTPKEPEPTTLKEPEPTTPKepepttPKEPEPTTPKEPEPTTPKEPEPtTPKEPEPTTPKEPEPTTPKEPEPTTPkep 427
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVIPD------PVDPDPVDPVIPDPVIPDPVDP-DPVDPEPVDPVIPDPTIPDIGQSDTP--- 628
                           90
                   ....*....|
gi 1907070847  428 ePTTPKEPEP 437
Cdd:PRK15313   629 -PITEHQFRP 637
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
388-477 1.80e-07

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 55.58  E-value: 1.80e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  388 EPTTPKEPEPTTPKEPEPTTPKepepttPKEPEPTTPKEPEPTTPKEPEPtTPKEPEPTTPKEPEPTTLKEPEPTTPkep 467
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVIPD------PVDPDPVDPVIPDPVIPDPVDP-DPVDPEPVDPVIPDPTIPDIGQSDTP--- 628
                           90
                   ....*....|
gi 1907070847  468 ePTTPKEPEP 477
Cdd:PRK15313   629 -PITEHQFRP 637
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
408-578 2.06e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 54.87  E-value: 2.06e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  408 PKEPEPTTPKEPEPTTPKEPEPTTPkepEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTT 487
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATA---APTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATK 437
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  488 PKEPEPTTLKEPEPtTPKEPEPTTTKEPESTTRKEPepttPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP--TTPKEPEP 565
Cdd:PRK07994   438 AKKSEPAAASRARP-VNSALERLASVRPAPSALEKA----PAKKEAYRWKATNPVEVKKEPVATPKALKKalEHEKTPEL 512
                          170
                   ....*....|...
gi 1907070847  566 TTPKEPEPTTPKE 578
Cdd:PRK07994   513 AAKLAAEAIERDP 525
Aim21 pfam11489
Altered inheritance of mitochondria protein 21; This is a family of proteins conserved in ...
336-617 2.34e-07

Altered inheritance of mitochondria protein 21; This is a family of proteins conserved in yeasts. Saccharomyces cerevisiae Aim21 may be involved in mitochondrial migration along actin filament. It may also interact with ribosomes.


Pssm-ID: 371558 [Multi-domain]  Cd Length: 677  Bit Score: 54.98  E-value: 2.34e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  336 PKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTpKEPEPTTPKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPT 414
Cdd:pfam11489  288 PSSPAPQSSSASPSGESGEEERDWYEEPILAS-DEVAKEPAGEEPAVSPSFEREEIVKyEVKSRTESVPESREESKIASI 366
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  415 TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLkEPEPTTPKEPEPT 494
Cdd:pfam11489  367 HGSVPSLARHTPLEDVEEYEPLFPEDDSEGAVKKPTEESSRFKRPELNHRFPSEDVWEDSPSSLQL-TATVSTPSNPPPR 445
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  495 TLKEPEPTTPKEPEPTTTKePESTTRKEPEPTTPKEPEPTTPKEP-------------EPTTPKEPEPTTPKEPEpttpK 561
Cdd:pfam11489  446 AFETPEQETSSSSSEPSLD-DQSELKSEDVKERPEVKAQRFPSRDvwedapesqelvtTVETPDEVKSTSPGVPT----K 520
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070847  562 EPEPTTPKEPEPTTPKEPE--PTTPKKPEPTTPKEPE-PTTPKEPEPTTPKEPEPTTPK 617
Cdd:pfam11489  521 PAIPARPKSGKPTSPTEKRkpPPVPKKPKPQIPARPAkAQPQQAGEEFKPKPRVPARPG 579
rne PRK10811
ribonuclease E; Reviewed
461-616 3.09e-07

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 54.66  E-value: 3.09e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  461 PTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEP----EPTTTKEPESTTRKEPEPTTPKEPEPTTP 536
Cdd:PRK10811   846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAevveEPVVVAEPQPEEVVVVETTHPEVIAAPVT 925
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  537 KEPEPTTPKEP--EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP-EPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEP 613
Cdd:PRK10811   926 EQPQVITESDVavAQEVAEHAEPVVEPQDETADIEEAAETAEVVVaEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQ 1005

                   ...
gi 1907070847  614 TTP 616
Cdd:PRK10811  1006 VPE 1008
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
333-552 3.45e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 54.50  E-value: 3.45e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  333 PTTPKEPEPTTPKEPEPTTPKEPEPTTlkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 412
Cdd:PRK12323   375 ATAAAAPVAQPAPAAAAPAAAAPAPAA---PPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  413 PTTPKEPEPTTPKEPEPttpkePEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPttlkepEPTTPKEPE 492
Cdd:PRK12323   452 PAPAAAPAAAARPAAAG-----PRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAP------AQPDAAPAG 520
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  493 PTTLKEPEPTTPKEPEPTTTKEPESTTrkEPEPTTPKEPEPTTPkepePTTPKEPEPTTP 552
Cdd:PRK12323   521 WVAESIPDPATADPDDAFETLAPAPAA--APAPRAAAATEPVVA----PRPPRASASGLP 574
NESP55 pfam06390
Neuroendocrine-specific golgi protein P55 (NESP55); This family consists of several mammalian ...
403-573 3.50e-07

Neuroendocrine-specific golgi protein P55 (NESP55); This family consists of several mammalian neuroendocrine-specific golgi protein P55 (NESP55) sequences. NESP55 is a novel member of the chromogranin family and is a soluble, acidic, heat-stable secretory protein that is expressed exclusively in endocrine and nervous tissues, although less widely than chromogranins.


Pssm-ID: 115071 [Multi-domain]  Cd Length: 261  Bit Score: 52.95  E-value: 3.50e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  403 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLK 481
Cdd:pfam06390   81 PEPSEPESDHEDEDFEPELARPECLEYDEDDfDTETDSETEPESDIESETEFETEPETEPDTAPTTEPETEPEDEPGPVV 160
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  482 EPEPTTPKE--PEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKEPEPT 558
Cdd:pfam06390  161 PKGATFHQSltERLHALKLQSADASPRRAPPSTQEPESAREGEEPERGPLDKDPRDPEEeEEEKEEEKQQPHRCKPKKPA 240
                          170
                   ....*....|....*
gi 1907070847  559 TPKEPEPTTPKEPEP 573
Cdd:pfam06390  241 RRRDPSPESPPKKGA 255
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
549-644 3.59e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 54.05  E-value: 3.59e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  549 PTTPKEPEPTTPKEPEPTTPKepepTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKE-P 627
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRPT----PAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAiP 437
                           90
                   ....*....|....*..
gi 1907070847  628 EPTTPKEPEPTTPKEPE 644
Cdd:PRK14950   438 VDEKPKYTPPAPPKEEE 454
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
507-585 3.60e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 54.51  E-value: 3.60e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070847  507 PEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 585
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDE 116
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
326-647 3.64e-07

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 436069 [Multi-domain]  Cd Length: 480  Bit Score: 54.15  E-value: 3.64e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  326 TTPKEPEPTTPKEPEPTTPKEPE--PTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTpKEP 403
Cdd:pfam17823   86 HTPHGTDLSEPATREGAADGAASraLAAAASSSPSSAAQSAPTTIAGLPSLASSAPMAAAPRTNAASNAPTAAASS-TAA 164
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  404 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEP 483
Cdd:pfam17823  165 ASGAPTTAASSAPATLTPASGISTAATATGHPAAGTALAAVGNSSPAAGTVTAAVGTVTPAALATLAAAAGTVASAAGTI 244
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  484 EPTTPKEPEPTTLKE-PEPTTPKEPEPTTTKEPESTTRKepepTTPKEPEPTTPKEPEPT-TPKEPEPTTPKEPEPTTPK 561
Cdd:pfam17823  245 NTGDPHARRLSPAKHmPSDTSARNPAAPSGAQAQGLIIQ----VSTDQPVHNTAGEPTPSpSNTTLEPNTPKSVASTNLA 320
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  562 EPEPTTPKEPEPTTPKEPEPTTPKKPE-----PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPE 636
Cdd:pfam17823  321 VVTTTKAQAKEPSASPVPVLHTSMIPEveatsPTTQPSPLLPTQGAAGPGILLAPDQVATDATAGTASAGPTPRSSGDPK 400
                          330
                   ....*....|.
gi 1907070847  637 PTTPKEPEPTT 647
Cdd:pfam17823  401 MLAMASCQLST 411
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
364-573 3.88e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 54.33  E-value: 3.88e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  364 EPTTPKEPEPTTPKEPepTTPKEPEPTtpkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 443
Cdd:PRK08691   373 ENTELQSPSAQTAEKE--TAAKKPQPR----PEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPDEAQTA 446
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  444 EPTTPKePEPTTLKEPEPTTPKEPEPTTPKEPEpttlKEPEPTTPKEPEPTtlkePEPTTP-KEPEPTTTKEPESTTRKE 522
Cdd:PRK08691   447 AGTAQT-SAKSIQTASEAETPPENQVSKNKAAD----NETDAPLSEVPSEN----PIQATPnDEAVETETFAHEAPAEPF 517
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070847  523 PEPTTPKEPEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKEP----EPTTPKEPEP 573
Cdd:PRK08691   518 YGYGFPDNDCPPEDGAEIPPPDWEhAAPADTAGGGADEEAEAggigGNNTPSAPPP 573
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
328-501 3.89e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 54.20  E-value: 3.89e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  328 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 407
Cdd:PRK14948   363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATT--PSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLN 440
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  408 PKE---------PEPTT------------------------------------------------------PKEPEPTTP 424
Cdd:PRK14948   441 LEElwqqilaklELPSTrmllsqqaelvsldsnraviavspnwlgmvqsrkplleqafakvlgrsiklnleSQSGSASNT 520
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070847  425 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTlkePEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEP 501
Cdd:PRK14948   521 AKTPPPPQKSPPPPAPTPPLPQPTATAPPPT---PPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSSP 594
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
523-597 4.20e-07

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 54.42  E-value: 4.20e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070847  523 PEPTTPKEPEPTTPK--EPEPTTPKEPEPTTPKEPEPtTPKEPEPTTPKEPEPTTPKEPEPTTPkkpePTTPKEPEP 597
Cdd:PRK15313   566 PDPVDPVIPDPVIPDpvDPDPVDPVIPDPVIPDPVDP-DPVDPEPVDPVIPDPTIPDIGQSDTP----PITEHQFRP 637
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
355-434 4.41e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 54.13  E-value: 4.41e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  355 PEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 434
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
rne PRK10811
ribonuclease E; Reviewed
365-530 5.74e-07

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 53.89  E-value: 5.74e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  365 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTpkEPEPTTPKEPEPTTPKEPEPTTPKE-PEPTTPKEP 443
Cdd:PRK10811   846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVAEPQPEEVVVVEtTHPEVIAAP 923
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  444 EPTTPKEPEPTTLKEPEPTTPkEPEPTTPKEPEPTTLKEPEPTT---PKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTR 520
Cdd:PRK10811   924 VTEQPQVITESDVAVAQEVAE-HAEPVVEPQDETADIEEAAETAevvVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVA 1002
                          170
                   ....*....|
gi 1907070847  521 KEPEPTTPKE 530
Cdd:PRK10811  1003 PAQVPEATVE 1012
rne PRK10811
ribonuclease E; Reviewed
437-627 5.83e-07

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 53.89  E-value: 5.83e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  437 PTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTlkEPEPTTPKEPEPTTLKEPEPTTPKEpepTTTKEPE 516
Cdd:PRK10811   846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVAEPQPEEVVVVE---TTHPEVI 920
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  517 STTRKEPEPTTPKEPEPT---TPKEPEPTTPKEPEPTTPKEPEPTtpkepEPTTPKEPEP-TTPKEPEPTTPKKPEPTTP 592
Cdd:PRK10811   921 AAPVTEQPQVITESDVAVaqeVAEHAEPVVEPQDETADIEEAAET-----AEVVVAEPEVvAQPAAPVVAEVAAEVETVT 995
                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 1907070847  593 KEPEPTTPKEPEPTTPKEPEPTTP--KEPEPTTRKEP 627
Cdd:PRK10811   996 AVEPEVAPAQVPEATVEHNHATAPmtRAPAPEYVPEA 1032
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
563-642 5.93e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 53.74  E-value: 5.93e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  563 PEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKE 642
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
339-418 5.98e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 53.74  E-value: 5.98e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  339 PEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 418
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PHA03247 PHA03247
large tegument protein UL36; Provisional
413-647 6.08e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 54.17  E-value: 6.08e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  413 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPkepepttPKEPEPTTLKEPEPTTPKEPE 492
Cdd:PHA03247   255 PAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAP-------LALPAPPDPPPPAPAGDAEEE 327
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  493 PTTLKEPEPTTPKePEPTTTKEPESTTRKEPEPTTPKEPEPTT-----PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 567
Cdd:PHA03247   328 DDEDGAMEVVSPL-PRPRQHYPLGFPKRRRPTWTPPSSLEDLSagrhhPKRASLPTRKRRSARHAATPFARGPGGDDQTR 406
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  568 PKEPEPTTPKEPEPTTPKKPEPTTPKEPEPT-TPKEPE-PTTPKEPEPTTPkePEPTTRKEPEPTTPKEPEP-TTPKEPE 644
Cdd:PHA03247   407 PAAPVPASVPTPAPTPVPASAPPPPATPLPSaEPGSDDgPAPPPERQPPAP--ATEPAPDDPDDATRKALDAlRERRPPE 484

                   ...
gi 1907070847  645 PTT 647
Cdd:PHA03247   485 PPG 487
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
571-649 6.09e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 53.74  E-value: 6.09e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070847  571 PEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPK 649
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDE 116
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
525-620 6.32e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 53.27  E-value: 6.32e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  525 PTTPKEPEPTTPKEPEPTTPKepepTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKE-P 603
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRPT----PAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAiP 437
                           90
                   ....*....|....*..
gi 1907070847  604 EPTTPKEPEPTTPKEPE 620
Cdd:PRK14950   438 VDEKPKYTPPAPPKEEE 454
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
440-702 6.35e-07

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 53.79  E-value: 6.35e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  440 PKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPttlkEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTT 519
Cdd:NF033845   543 PKDPTPGPPVDPEPSPEPEPEPTPDPEPSPDPDPEPSP----DPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDS 618
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  520 RKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTT 599
Cdd:NF033845   619 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 698
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  600 PKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEI 679
Cdd:NF033845   699 SDSSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 778
                          250       260
                   ....*....|....*....|....
gi 1907070847  680 QNKPEETTPASEDSD-DSKTTLKP 702
Cdd:NF033845   779 DSDSDSDSDSDSDSDsDSDSRVTP 802
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
352-525 6.62e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 53.43  E-value: 6.62e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  352 PKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 431
Cdd:PRK14948   363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATT--PSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLN 440
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  432 PKE---------PEPTT------------------------------------------------------PKEPEPTTP 448
Cdd:PRK14948   441 LEElwqqilaklELPSTrmllsqqaelvsldsnraviavspnwlgmvqsrkplleqafakvlgrsiklnleSQSGSASNT 520
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070847  449 KEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTlkePEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEP 525
Cdd:PRK14948   521 AKTPPPPQKSPPPPAPTPPLPQPTATAPPPT---PPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSSP 594
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
499-578 6.80e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 53.74  E-value: 6.80e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  499 PEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 578
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
339-428 7.69e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 53.27  E-value: 7.69e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  339 PEPTTPKEPEPTtPKEPEPTTLKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKE-PEPTTP 416
Cdd:PRK14950   366 PQPAKPTAAAPS-PVRPTPAPSTRPKAAAAANIPPKEPVrETATPPPVPPRPVAP--PVPHTPESAPKLTRAAiPVDEKP 442
                           90
                   ....*....|..
gi 1907070847  417 KEPEPTTPKEPE 428
Cdd:PRK14950   443 KYTPPAPPKEEE 454
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
347-426 8.76e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 53.36  E-value: 8.76e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  347 PEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 426
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
387-483 9.06e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 53.36  E-value: 9.06e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  387 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTlkepepttpke 466
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAA----------- 106
                           90
                   ....*....|....*..
gi 1907070847  467 PEPTTPKEPEPTTLKEP 483
Cdd:PRK12270   107 APAAAAVEDEVTPLRGA 123
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
483-645 9.32e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 53.04  E-value: 9.32e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  483 PEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTrkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE------ 556
Cdd:PRK14948   366 SEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAAT--TPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPslnlee 443
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  557 -----------PTT------------------------------------------------------PKEPEPTTPKEP 571
Cdd:PRK14948   444 lwqqilaklelPSTrmllsqqaelvsldsnraviavspnwlgmvqsrkplleqafakvlgrsiklnleSQSGSASNTAKT 523
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907070847  572 EPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKePEPTTPKEPEP 645
Cdd:PRK14948   524 PPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPT-PSPTKDSSPEE 596
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
411-512 9.95e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 52.97  E-value: 9.95e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  411 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTlkePEPTTPKE 490
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAA---APAAAAVE 114
                           90       100
                   ....*....|....*....|....*..
gi 1907070847  491 PEPTTLKEPEPTTPKEPE-----PTTT 512
Cdd:PRK12270   115 DEVTPLRGAAAAVAKNMDaslevPTAT 141
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
511-594 1.08e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 52.97  E-value: 1.08e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  511 TTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPT 590
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAV 113

                   ....
gi 1907070847  591 TPKE 594
Cdd:PRK12270   114 EDEV 117
rne PRK10811
ribonuclease E; Reviewed
485-648 1.12e-06

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 52.73  E-value: 1.12e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  485 PTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTpkEPEPTTPKEPEPTTpkEPEPTTPKEPEPTTPKEPE 564
Cdd:PRK10811   846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVA--EPQPEEVVVVETTHPEVIA 921
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  565 PTTPKEPEPTTPKEP--EPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEP-EPTTPKEPEPTTRKEPEPTTPKEPEPTTPK 641
Cdd:PRK10811   922 APVTEQPQVITESDVavAQEVAEHAEPVVEPQDETADIEEAAETAEVVVaEPEVVAQPAAPVVAEVAAEVETVTAVEPEV 1001

                   ....*..
gi 1907070847  642 EPEPTTP 648
Cdd:PRK10811  1002 APAQVPE 1008
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
361-633 1.14e-06

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 411414 [Multi-domain]  Cd Length: 871  Bit Score: 52.64  E-value: 1.14e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  361 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTtpKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 440
Cdd:NF033845   544 KDPTPGPPVDPEPSPEPEPEPTPDPEPSPD--PDPEPSPDPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDSDSDSDSDSD 621
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  441 KEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTR 520
Cdd:NF033845   622 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 701
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  521 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTP 600
Cdd:NF033845   702 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 781
                          250       260       270
                   ....*....|....*....|....*....|...
gi 1907070847  601 KEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPK 633
Cdd:NF033845   782 SDSDSDSDSDSDSDSDSRVTPPNNEQKAPSNPK 814
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
464-626 1.23e-06

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 52.29  E-value: 1.23e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  464 PKEPEPTT-PKEPEPTTLKEPEPTTPKEP-EPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTP----K 537
Cdd:PRK13108   295 ALEREPAElAAAAVASAASAVGPVGPGEPnQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEAdierE 374
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  538 EPEPTTPKEPE-PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKkpepTTPKEPEPTTPKEPEPtTPKEPEPTTP 616
Cdd:PRK13108   375 QPGDLAGQAPAaHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPI----PDPAKPDELAVAGPGD-DPAEPDGIRR 449
                          170
                   ....*....|
gi 1907070847  617 KEPEPTTRKE 626
Cdd:PRK13108   450 QDDFSSRRRR 459
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
331-410 1.23e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 52.97  E-value: 1.23e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  331 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 410
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
555-634 1.24e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 52.97  E-value: 1.24e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  555 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKE 634
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
356-565 1.35e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 52.40  E-value: 1.35e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  356 EPTTLKEPEPTTPKEPepTTPKEPEPTTPKEPEPTTPKEPE----PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 431
Cdd:PRK08691   373 ENTELQSPSAQTAEKE--TAAKKPQPRPEAETAQTPVQTASaaamPSEGKTAGPVSNQENNDVPPWEDAPDEAQTAAGTA 450
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  432 PKePEPTTPKEPEPTTPKEPEPTTLKEPEpttpKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTT 511
Cdd:PRK08691   451 QT-SAKSIQTASEAETPPENQVSKNKAAD----NETDAPLSEVPSENPIQATPNDEAVETETFAHEAPAEPFYGYGFPDN 525
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1907070847  512 TKEPESTTRKEPEPTTPKEPEPTTPKEPEpttpKEPEPTTPKEPEptTPKEPEP 565
Cdd:PRK08691   526 DCPPEDGAEIPPPDWEHAAPADTAGGGAD----EEAEAGGIGGNN--TPSAPPP 573
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
362-613 1.37e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 52.54  E-value: 1.37e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  362 EPEPT----TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 437
Cdd:PRK07003   359 EPAVTgggaPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADR 438
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  438 TTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPtttkEPES 517
Cdd:PRK07003   439 GDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDA----RAPA 514
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  518 TTRKEPEPTTPKEPEPTTPkEPEPTTPKEP------------------EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 579
Cdd:PRK07003   515 AASREDAPAAAAPPAPEAR-PPTPAAAAPAaraggaaaaldvlrnagmRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVA 593
                          250       260       270
                   ....*....|....*....|....*....|....*
gi 1907070847  580 EPT-TPKKPEPTTPKEPEPTTPKEPEPTTPKEPEP 613
Cdd:PRK07003   594 VQVpTPRARAATGDAPPNGAARAEQAAESRGAPPP 628
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
323-402 1.41e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 52.59  E-value: 1.41e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  323 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 402
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
317-482 1.42e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 52.27  E-value: 1.42e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  317 STTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKE---------P 387
Cdd:PRK14948   374 PANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLNLEElwqqilaklE 453
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  388 EPTT------------------------------------------------------PKEPEPTTPKEPEPTTPKEPEP 413
Cdd:PRK14948   454 LPSTrmllsqqaelvsldsnraviavspnwlgmvqsrkplleqafakvlgrsiklnleSQSGSASNTAKTPPPPQKSPPP 533
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070847  414 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTlkePEPTTPKEPEPTTPKEPEPTTLKE 482
Cdd:PRK14948   534 PAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS---PPPPIPEEPTPSPTKDSSPEEIDK 599
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
363-452 1.54e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 52.12  E-value: 1.54e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  363 PEPTTPKEPEPTtPKEPEPTTPKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKE-PEPTTP 440
Cdd:PRK14950   366 PQPAKPTAAAPS-PVRPTPAPSTRPKAAAAANIPPKEPVrETATPPPVPPRPVAP--PVPHTPESAPKLTRAAiPVDEKP 442
                           90
                   ....*....|..
gi 1907070847  441 KEPEPTTPKEPE 452
Cdd:PRK14950   443 KYTPPAPPKEEE 454
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
325-420 1.55e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 52.12  E-value: 1.55e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  325 PTTPKEPEPTTPKEPEPTTPKepepTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE-P 403
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRPT----PAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAiP 437
                           90
                   ....*....|....*..
gi 1907070847  404 EPTTPKEPEPTTPKEPE 420
Cdd:PRK14950   438 VDEKPKYTPPAPPKEEE 454
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
523-612 1.59e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 52.12  E-value: 1.59e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  523 PEPTTPKEPEPTtPKEPEPTTPKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPkePEPTTPKKPEPTTPKE-PEPTTP 600
Cdd:PRK14950   366 PQPAKPTAAAPS-PVRPTPAPSTRPKAAAAANIPPKEPVrETATPPPVPPRPVAP--PVPHTPESAPKLTRAAiPVDEKP 442
                           90
                   ....*....|..
gi 1907070847  601 KEPEPTTPKEPE 612
Cdd:PRK14950   443 KYTPPAPPKEEE 454
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
412-488 1.65e-06

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 52.49  E-value: 1.65e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070847  412 EPTTPKEPEPTTPKEPEPTTPKepepttPKEPEPTTPKEPEPtTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTP 488
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVIPD------PVDPDPVDPVIPDP-VIPDPVDPDPVDPEPVDPVIPDPTIPDIGQSDTP 628
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
539-646 1.94e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 52.02  E-value: 1.94e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  539 PEPTTPKEPEPTTP---KEPEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPT 614
Cdd:PRK14951   376 AEKKTPARPEAAAPaaaPVAQAAAAPAPAAAPAAAaSAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQA 455
                           90       100       110
                   ....*....|....*....|....*....|..
gi 1907070847  615 TPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPT 646
Cdd:PRK14951   456 APETVAIPVRVAPEPAVASAAPAPAAAPAAAR 487
DUF4045 pfam13254
Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. ...
469-637 1.95e-06

Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length.


Pssm-ID: 433066 [Multi-domain]  Cd Length: 415  Bit Score: 51.32  E-value: 1.95e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  469 PTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPEStTRKEPEPTTPKEPEPTTPKEPEPTTPKEPE 548
Cdd:pfam13254  197 PNSFKEVTPVGLMRSPAPGGHSKSPSVSGISADSSPTKEEPSEEADTLS-TDKEQSPAPTSASEPPPKTKELPKDSEEPA 275
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  549 PTTPKEPEPTTPKEPEptTPKEPEPTTPKEPEPTTPKKPEPTTPKepePTTPKEPEPTTPKEPEPTTPKEPEPTTRK-EP 627
Cdd:pfam13254  276 APSKSAEASTEKKEPD--TESSPETSSEKSAPSLLSPVSKASIDK---PLSSPDRDPLSPKPKPQSPPKDFRANLRSrEV 350
                          170
                   ....*....|
gi 1907070847  628 EPTTPKEPEP 637
Cdd:pfam13254  351 PKDKSKKDEP 360
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
323-397 1.98e-06

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 52.11  E-value: 1.98e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070847  323 PEPTTPKEPEPTTPK--EPEPTTPKEPEPTTPKEPEPTTLkEPEPTTPKEPEPTTPKEPEPTTPkepePTTPKEPEP 397
Cdd:PRK15313   566 PDPVDPVIPDPVIPDpvDPDPVDPVIPDPVIPDPVDPDPV-DPEPVDPVIPDPTIPDIGQSDTP----PITEHQFRP 637
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
533-636 1.99e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 51.73  E-value: 1.99e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  533 PTTPKEPEPTTPKEPEPTTPKePEPTTpkepePTTPKEPEPTTPKEPEPTTPKKPEPTtpkePEPTTPkePEPTTPKEPE 612
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRPT-PAPST-----RPKAAAAANIPPKEPVRETATPPPVP----PRPVAP--PVPHTPESAP 429
                           90       100
                   ....*....|....*....|....*
gi 1907070847  613 PTTPKE-PEPTTRKEPEPTTPKEPE 636
Cdd:PRK14950   430 KLTRAAiPVDEKPKYTPPAPPKEEE 454
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
381-476 2.06e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 51.73  E-value: 2.06e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  381 PTTPKEPEPTTPKEPEPTTPKepepTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKE-P 459
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRPT----PAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAiP 437
                           90
                   ....*....|....*..
gi 1907070847  460 EPTTPKEPEPTTPKEPE 476
Cdd:PRK14950   438 VDEKPKYTPPAPPKEEE 454
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
349-444 2.09e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 51.73  E-value: 2.09e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  349 PTTPKEPEPTTLKEPEPTTPKepepTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE-P 427
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRPT----PAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAiP 437
                           90
                   ....*....|....*..
gi 1907070847  428 EPTTPKEPEPTTPKEPE 444
Cdd:PRK14950   438 VDEKPKYTPPAPPKEEE 454
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
434-627 2.19e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 51.77  E-value: 2.19e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  434 EPEPTTPKEPEPTTPKEPePTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTtPKEPEPTTTK 513
Cdd:PRK07003   359 EPAVTGGGAPGGGVPARV-AGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAP-PAAPAPPATA 436
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  514 EPESTTRKEPEPTTPKEPEPTTPKEPEPttPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPK 593
Cdd:PRK07003   437 DRGDDAADGDAPVPAKANARASADSRCD--ERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPA 514
                          170       180       190
                   ....*....|....*....|....*....|....
gi 1907070847  594 EPepttPKEPEPTTPKEPEPTTPkEPEPTTRKEP 627
Cdd:PRK07003   515 AA----SREDAPAAAAPPAPEAR-PPTPAAAAPA 543
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
488-650 2.74e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 51.50  E-value: 2.74e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  488 PKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 567
Cdd:PRK14948   361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLN 440
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  568 PKE---------PEPTT------------------------------------------------------PKEPEPTTP 584
Cdd:PRK14948   441 LEElwqqilaklELPSTrmllsqqaelvsldsnraviavspnwlgmvqsrkplleqafakvlgrsiklnleSQSGSASNT 520
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070847  585 KKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPKK 650
Cdd:PRK14948   521 AKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTP 586
NESP55 pfam06390
Neuroendocrine-specific golgi protein P55 (NESP55); This family consists of several mammalian ...
483-650 2.95e-06

Neuroendocrine-specific golgi protein P55 (NESP55); This family consists of several mammalian neuroendocrine-specific golgi protein P55 (NESP55) sequences. NESP55 is a novel member of the chromogranin family and is a soluble, acidic, heat-stable secretory protein that is expressed exclusively in endocrine and nervous tissues, although less widely than chromogranins.


Pssm-ID: 115071 [Multi-domain]  Cd Length: 261  Bit Score: 49.86  E-value: 2.95e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  483 PEPTTPKEPEPTTLKEPEPTTPKEPEPTTTK-EPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 561
Cdd:pfam06390   81 PEPSEPESDHEDEDFEPELARPECLEYDEDDfDTETDSETEPESDIESETEFETEPETEPDTAPTTEPETEPEDEPGPVV 160
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  562 EPEPT---TPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPT 638
Cdd:pfam06390  161 PKGATfhqSLTERLHALKLQSADASPRRAPPSTQEPESAREGEEPERGPLDKDPRDPEEEEEEKEEEKQQPHRCKPKKPA 240
                          170
                   ....*....|..
gi 1907070847  639 TPKEPEPTTPKK 650
Cdd:pfam06390  241 RRRDPSPESPPK 252
NESP55 pfam06390
Neuroendocrine-specific golgi protein P55 (NESP55); This family consists of several mammalian ...
363-533 3.74e-06

Neuroendocrine-specific golgi protein P55 (NESP55); This family consists of several mammalian neuroendocrine-specific golgi protein P55 (NESP55) sequences. NESP55 is a novel member of the chromogranin family and is a soluble, acidic, heat-stable secretory protein that is expressed exclusively in endocrine and nervous tissues, although less widely than chromogranins.


Pssm-ID: 115071 [Multi-domain]  Cd Length: 261  Bit Score: 49.86  E-value: 3.74e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  363 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP--KEPEPTTPKEPEPTT 439
Cdd:pfam06390   81 PEPSEPESDHEDEDFEPELARPECLEYDEDDfDTETDSETEPESDIESETEFETEPETEPDTAptTEPETEPEDEPGPVV 160
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  440 PKEPEPTTPKEPEPTTLKEPEP-TTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPEST 518
Cdd:pfam06390  161 PKGATFHQSLTERLHALKLQSAdASPRRAPPSTQEPESAREGEEPERGPLDKDPRDPEEEEEEKEEEKQQPHRCKPKKPA 240
                          170
                   ....*....|....*
gi 1907070847  519 TRKEPEPTTPKEPEP 533
Cdd:pfam06390  241 RRRDPSPESPPKKGA 255
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
371-491 3.78e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 50.87  E-value: 3.78e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  371 PEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 449
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPA 453
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1907070847  450 EPEPTTLKEPEPTTPkEPEPTTPKEPePTTLKEPEPTTPKEP 491
Cdd:PRK14951   454 QAAPETVAIPVRVAP-EPAVASAAPA-PAAAPAAARLTPTEE 493
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
491-570 3.86e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 51.04  E-value: 3.86e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  491 PEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 570
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
323-440 4.12e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 50.87  E-value: 4.12e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  323 PEPTTPKEPEPTTP-KEPEPTTPKepePTTPKEPEPTTLKEP-EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 400
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQAAA---APAPAAAPAAAASAPaAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPP 452
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1907070847  401 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 440
Cdd:PRK14951   453 AQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
397-492 4.19e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 50.58  E-value: 4.19e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  397 PTTPKEPEPTTPKEPEPTTPKepepTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKE-P 475
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRPT----PAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAiP 437
                           90
                   ....*....|....*..
gi 1907070847  476 EPTTLKEPEPTTPKEPE 492
Cdd:PRK14950   438 VDEKPKYTPPAPPKEEE 454
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
339-458 4.52e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 50.87  E-value: 4.52e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  339 PEPTTPKEPEPTTP-KEPEPTTlkePEPTTPKEPEPT-TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 416
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQA---AAAPAPAAAPAAaASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPP 452
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1907070847  417 KEPEPTTPKEPEPTTPkEPEPTTPKEPEPTTPKEPEPTTLKE 458
Cdd:PRK14951   453 AQAAPETVAIPVRVAP-EPAVASAAPAPAAAPAAARLTPTEE 493
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
395-514 4.68e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 50.48  E-value: 4.68e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  395 PEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPK 473
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPA 453
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1907070847  474 EPEPTTLKEPEPTTPkEPEPTTLKEPEPTTPKEPEPTTTKE 514
Cdd:PRK14951   454 QAAPETVAIPVRVAP-EPAVASAAPAPAAAPAAARLTPTEE 493
PRK10819 PRK10819
transport protein TonB; Provisional
331-460 4.88e-06

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 49.30  E-value: 4.88e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  331 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKEPEPTTPKEPEPTtpK 409
Cdd:PRK10819    42 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPvVIPKPEPKPKPKPKPKPKPVKKVEEQPK--R 119
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1907070847  410 EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKePEPTTPKEPEPTTLKEPE 460
Cdd:PRK10819   120 EVKPVEPRPASPFENTAPARPTSSTATAAASK-PVTSVSSGPRALSRNQPQ 169
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
523-640 5.41e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 50.48  E-value: 5.41e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  523 PEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPK 601
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPA 453
                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1907070847  602 EPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTP 640
Cdd:PRK14951   454 QAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
428-504 5.83e-06

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 50.57  E-value: 5.83e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070847  428 EPTTPKEPEPTTPKEPEPTTPkepEPTtlkEPEPTTPKEPEPTTPKEPEPTTLkEPEPTTPKEPEPTTLKEPEPTTP 504
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVIP---DPV---DPDPVDPVIPDPVIPDPVDPDPV-DPEPVDPVIPDPTIPDIGQSDTP 628
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
505-809 6.06e-06

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 50.46  E-value: 6.06e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  505 KEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKEPE-- 580
Cdd:PTZ00449   493 KKKLAPIEEEDSDKHDEPPEGPEASGLPPKAPGDKEGEEGeHEDSKESDEPKEGGKPGEtKEGEVGKKPGPAKEHKPSki 572
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  581 PTTPKKPEptTPKEPE-PTTPKEP-EPTTPKEPE-PTTPKEPepttrKEPE----PTTPKEPE-PTTPKEPEPTTPKKPE 652
Cdd:PTZ00449   573 PTLSKKPE--FPKDPKhPKDPEEPkKPKRPRSAQrPTRPKSP-----KLPElldiPKSPKRPEsPKSPKRPPPPQRPSSP 645
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  653 PTTTSPKTTTLKATTLAPKVTAPAEEIQNKPEETTPASEDSDDSKTTLKPQKPTKAPKPTKKPTKAPKKPTSTKKPKTPK 732
Cdd:PTZ00449   646 ERPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKL 725
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  733 TRKPKTTPSPLKTTSATP----ELNTTPLEVMLPTTTIPKQTPNPE--TAEVNPDHEDADGGEGEKPLI-PGPPVLFPTA 805
Cdd:PTZ00449   726 PRDEEFPFEPIGDPDAEQpddiEFFTPPEEERTFFHETPADTPLPDilAEEFKEEDIHAETGEPDEAMKrPDSPSEHEDK 805

                   ....
gi 1907070847  806 IPGT 809
Cdd:PTZ00449   806 PPGD 809
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
500-589 6.24e-06

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 50.57  E-value: 6.24e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  500 EPTTPKEPEPTTTKEPEsttrkePEPTTPKEPEPTTPKEPEPTTPKEPEPtTPKEPEPTTPKEPEPTTPKEPEPTTPkep 579
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPD------PVIPDPVDPDPVDPVIPDPVIPDPVDP-DPVDPEPVDPVIPDPTIPDIGQSDTP--- 628
                           90
                   ....*....|
gi 1907070847  580 ePTTPKKPEP 589
Cdd:PRK15313   629 -PITEHQFRP 637
PRK10819 PRK10819
transport protein TonB; Provisional
523-641 6.25e-06

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 48.91  E-value: 6.25e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  523 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKKPEPTTPKEPEPTTPK 601
Cdd:PRK10819    42 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPvVIPKPEPKPKPKPKPKPKPVKKVEEQPKREV 121
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1907070847  602 EPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPK 641
Cdd:PRK10819   122 KPVEPRPASPFENTAPARPTSSTATAAASKPVTSVSSGPR 161
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
363-484 6.76e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 50.10  E-value: 6.76e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  363 PEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 441
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPA 453
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1907070847  442 EPEPTTPKEPEPTtlkEPEPTTPKEPEPTTPKEPEPTTLKEPE 484
Cdd:PRK14951   454 QAAPETVAIPVRV---APEPAVASAAPAPAAAPAAARLTPTEE 493
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
475-600 7.81e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 50.10  E-value: 7.81e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  475 PEPTTLKEPEPTTP-KEPEPTTlkePEPTTPKEPEPTTTKEPesttrkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 553
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQA---AAAPAPAAAPAAAASAP-------AAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV 445
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1907070847  554 EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTP 600
Cdd:PRK14951   446 ALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
388-597 8.01e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 50.09  E-value: 8.01e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  388 EPTTPKEPEPTTPKEPepTTPKEPEPTtpkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEP 467
Cdd:PRK08691   373 ENTELQSPSAQTAEKE--TAAKKPQPR----PEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPDEAQTA 446
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  468 EPTTPKePEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEP-ESTTRKEPEPTTPKEPEPTTPKEPEPTTPKE 546
Cdd:PRK08691   447 AGTAQT-SAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPiQATPNDEAVETETFAHEAPAEPFYGYGFPDN 525
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1907070847  547 PEPttPKEPEPTTPKEPEPTTPKEPEPTTPKEpEPTTPKKPEPTTPKEPEP 597
Cdd:PRK08691   526 DCP--PEDGAEIPPPDWEHAAPADTAGGGADE-EAEAGGIGGNNTPSAPPP 573
PRK10263 PRK10263
DNA translocase FtsK; Provisional
328-649 8.74e-06

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 50.08  E-value: 8.74e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  328 PKEPEPTTPKEPEPTTPkEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPE-------PTTPKEPEPTTPKEPEPTTP 400
Cdd:PRK10263   366 PQTGEPVIAPAPEGYPQ-QSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQqpyyapaPEQPAQQPYYAPAPEQPVAG 444
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  401 KE---PEPTTPKEPEPTTPKE---PEPTTPKEPE-PTTPKEPEPTTPKEP--EPTTPKEPEPTTLKEPEPTTPKEPEPTT 471
Cdd:PRK10263   445 NAwqaEEQQSTFAPQSTYQTEqtyQQPAAQEPLYqQPQPVEQQPVVEPEPvvEETKPARPPLYYFEEVEEKRAREREQLA 524
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  472 P-KEPEPTTLKEPEPTTPKEPEPTTLKEP--EPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTT----PKEPEPTTP 544
Cdd:PRK10263   525 AwYQPIPEPVKEPEPIKSSLKAPSVAAVPpvEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSggprPQVKEGIGP 604
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  545 KEPEPTTPKEP-----------------------------------------------------------------EPTT 559
Cdd:PRK10263   605 QLPRPKRIRVPtrrelasygiklpsqraaeekareaqrnqydsgdqynddeidamqqdelarqfaqtqqqrygeqyQHDV 684
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  560 PKEPEPT-----------------------------------------------TPKEP--EPTTPKEPEPTTPKKPEPT 590
Cdd:PRK10263   685 PVNAEDAdaaaeaelarqfaqtqqqrysgeqpaganpfslddfefspmkallddGPHEPlfTPIVEPVQQPQQPVAPQQQ 764
                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907070847  591 TPKEPEPTTP----KEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPK 649
Cdd:PRK10263   765 YQQPQQPVAPqpqyQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQ 827
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
484-581 8.76e-06

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 49.80  E-value: 8.76e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  484 EPTTPKEPEPTTLKEPEPTTPkepEPTttkepesttrkEPEPTTPKEPEPTTPKEPEPtTPKEPEPTTPKEPEPTTPKEP 563
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVIP---DPV-----------DPDPVDPVIPDPVIPDPVDP-DPVDPEPVDPVIPDPTIPDIG 623
                           90
                   ....*....|....*...
gi 1907070847  564 EPTTPkepePTTPKEPEP 581
Cdd:PRK15313   624 QSDTP----PITEHQFRP 637
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
421-517 9.05e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 49.81  E-value: 9.05e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  421 PTTPKEPEPTTPKEPEPTTPKepepTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKE-P 499
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRPT----PAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAiP 437
                           90
                   ....*....|....*...
gi 1907070847  500 EPTTPKEPEPTTTKEPES 517
Cdd:PRK14950   438 VDEKPKYTPPAPPKEEEK 455
NESP55 pfam06390
Neuroendocrine-specific golgi protein P55 (NESP55); This family consists of several mammalian ...
427-605 9.23e-06

Neuroendocrine-specific golgi protein P55 (NESP55); This family consists of several mammalian neuroendocrine-specific golgi protein P55 (NESP55) sequences. NESP55 is a novel member of the chromogranin family and is a soluble, acidic, heat-stable secretory protein that is expressed exclusively in endocrine and nervous tissues, although less widely than chromogranins.


Pssm-ID: 115071 [Multi-domain]  Cd Length: 261  Bit Score: 48.32  E-value: 9.23e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  427 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTLK-EPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPK 505
Cdd:pfam06390   81 PEPSEPESDHEDEDFEPELARPECLEYDEDDfDTETDSETEPESDIESETEFETEPETEPDTAPTTEPETEPEDEPGPVV 160
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  506 EPEPT---TTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEpTTPKEPEPTTPKEPEpttpkEPEPTTPKEPEPT 582
Cdd:pfam06390  161 PKGATfhqSLTERLHALKLQSADASPRRAPPSTQEPESAREGEEPE-RGPLDKDPRDPEEEE-----EEKEEEKQQPHRC 234
                          170       180
                   ....*....|....*....|...
gi 1907070847  583 TPKKPEPTTPKEPEPTTPKEPEP 605
Cdd:pfam06390  235 KPKKPARRRDPSPESPPKKGAIP 257
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
331-448 9.76e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 49.71  E-value: 9.76e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  331 PEPTTPKEPEPTTP-KEPEPTTPKEPEPTTlkePEPT-TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 408
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQAAAAPAPAA---APAAaASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPP 452
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1907070847  409 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 448
Cdd:PRK14951   453 AQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
531-695 1.18e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 49.48  E-value: 1.18e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  531 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK---KPEPTTPKEPEPTTPKEPEPTT 607
Cdd:PRK07994   366 PEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSqllAARQQLQRAQGATKAKKSEPAA 445
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  608 PKEPEPtTPKEPEPTTRKEPEP-TTPKEPEPTTPKEPEPTTPkkpeptttspkTTTLKATTLAPKVTAPAEEIQNKPEET 686
Cdd:PRK07994   446 ASRARP-VNSALERLASVRPAPsALEKAPAKKEAYRWKATNP-----------VEVKKEPVATPKALKKALEHEKTPELA 513

                   ....*....
gi 1907070847  687 TPASEDSDD 695
Cdd:PRK07994   514 AKLAAEAIE 522
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
503-596 1.27e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 49.04  E-value: 1.27e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  503 TPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKE-PE 580
Cdd:PRK14950   361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVrETATPPPVPPRPVAP--PVPHTPESAPKLTRAAiPV 438
                           90
                   ....*....|....*.
gi 1907070847  581 PTTPKKPEPTTPKEPE 596
Cdd:PRK14950   439 DEKPKYTPPAPPKEEE 454
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
509-604 1.50e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 49.04  E-value: 1.50e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  509 PTTTKEPESTTRKEPEPTTPKepepTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKK-P 587
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRPT----PAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAiP 437
                           90
                   ....*....|....*..
gi 1907070847  588 EPTTPKEPEPTTPKEPE 604
Cdd:PRK14950   438 VDEKPKYTPPAPPKEEE 454
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
355-474 1.55e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 48.94  E-value: 1.55e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  355 PEPTTLKEPEPTTP-KEPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 433
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPA 453
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1907070847  434 EPEPTTPKEPEPTTPkEPEPTTLKEPEPTTPKEPEPTTPKE 474
Cdd:PRK14951   454 QAAPETVAIPVRVAP-EPAVASAAPAPAAAPAAARLTPTEE 493
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
470-580 1.59e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 49.04  E-value: 1.59e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  470 TTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPT-TPKEPEPTTTKEPESTTRKEPEPTTPK-EPEPTTPKEPEPTTPkeP 547
Cdd:PRK14950   343 TTSYGQLPLELAVIEALLVPVPAPQPAKPTAAApSPVRPTPAPSTRPKAAAAANIPPKEPVrETATPPPVPPRPVAP--P 420
                           90       100       110
                   ....*....|....*....|....*....|....
gi 1907070847  548 EPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKEPE 580
Cdd:PRK14950   421 VPHTPESAPKLTRAAiPVDEKPKYTPPAPPKEEE 454
PHA03247 PHA03247
large tegument protein UL36; Provisional
365-599 1.61e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.17  E-value: 1.61e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  365 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP---------TTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 435
Cdd:PHA03247   255 PAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDgvwgaalagAPLALPAPPDPPPPAPAGDAEEEDDEDGAM 334
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  436 EPTTPKePEPTT------PKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTpKEPEPTTLKEPEPTTPKEPEP 509
Cdd:PHA03247   335 EVVSPL-PRPRQhyplgfPKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRKRRSARHA-ATPFARGPGGDDQTRPAAPVP 412
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  510 TTTKEPESTTRKEPEPTTPKEPEPT-TPKEPE-PTTPKEPEPTTPKEPepttPKEPEPTTPKEPEPTTPKEPEPTTPKKP 587
Cdd:PHA03247   413 ASVPTPAPTPVPASAPPPPATPLPSaEPGSDDgPAPPPERQPPAPATE----PAPDDPDDATRKALDALRERRPPEPPGA 488
                          250
                   ....*....|..
gi 1907070847  588 EPTTPKEPEPTT 599
Cdd:PHA03247   489 DLAELLGRHPDT 500
PHA03247 PHA03247
large tegument protein UL36; Provisional
331-535 1.70e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.17  E-value: 1.70e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  331 PEPTTPKEPEPTTPKEPEPTTPKEPEP---------TTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP--------- 392
Cdd:PHA03247   269 PETARGATGPPPPPEAAAPNGAAAPPDgvwgaalagAPLALPAPPDPPPPAPAGDAEEEDDEDGAMEVVSPlprprqhyp 348
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  393 ------KEPEPTTPKEPEPTTPKEPEPttPKEPEPTTPKEpepTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKE 466
Cdd:PHA03247   349 lgfpkrRRPTWTPPSSLEDLSAGRHHP--KRASLPTRKRR---SARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPV 423
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907070847  467 P--EPTTPKEPEPTtlkePEPTTPKEPEPTtlkePEPTTPKEPEPTTTKEPESTTRKEPEP-TTPKEPEPTT 535
Cdd:PHA03247   424 PasAPPPPATPLPS----AEPGSDDGPAPP----PERQPPAPATEPAPDDPDDATRKALDAlRERRPPEPPG 487
NESP55 pfam06390
Neuroendocrine-specific golgi protein P55 (NESP55); This family consists of several mammalian ...
323-497 1.74e-05

Neuroendocrine-specific golgi protein P55 (NESP55); This family consists of several mammalian neuroendocrine-specific golgi protein P55 (NESP55) sequences. NESP55 is a novel member of the chromogranin family and is a soluble, acidic, heat-stable secretory protein that is expressed exclusively in endocrine and nervous tissues, although less widely than chromogranins.


Pssm-ID: 115071 [Multi-domain]  Cd Length: 261  Bit Score: 47.55  E-value: 1.74e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  323 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK-EPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 401
Cdd:pfam06390   81 PEPSEPESDHEDEDFEPELARPECLEYDEDDfDTETDSETEPESDIESETEFETEPETEPDTAPTTEPETEPEDEPGPVV 160
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  402 EPEPT---TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPT 478
Cdd:pfam06390  161 PKGATfhqSLTERLHALKLQSADASPRRAPPSTQEPESAREGEEPERGPLDKDPRDPEEEEEEKEEEKQQPHRCKPKKPA 240
                          170
                   ....*....|....*....
gi 1907070847  479 TLKEPEPTTPKEPEPTTLK 497
Cdd:pfam06390  241 RRRDPSPESPPKKGAIPIR 259
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
436-522 2.25e-05

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 48.64  E-value: 2.25e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  436 EPTTPKEPEPTTPKEPEPTTlkePEPTtpkEPEPTTPKEPEPtTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEP 515
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVI---PDPV---DPDPVDPVIPDP-VIPDPVDPDPVDPEPVDPVIPDPTIPDIGQSDTPPIT 631

                   ....*..
gi 1907070847  516 ESTTRKE 522
Cdd:PRK15313   632 EHQFRPE 638
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
459-556 2.64e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 48.27  E-value: 2.64e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  459 PEPTTPKEPEPTtPKEPEPTTLKEPEPTTPKEPEPttlKEPEPTTPkePEPTTTKEPESTtrkePEPTTPKEPEPTTPKE 538
Cdd:PRK14950   366 PQPAKPTAAAPS-PVRPTPAPSTRPKAAAAANIPP---KEPVRETA--TPPPVPPRPVAP----PVPHTPESAPKLTRAA 435
                           90
                   ....*....|....*....
gi 1907070847  539 -PEPTTPKEPEPTTPKEPE 556
Cdd:PRK14950   436 iPVDEKPKYTPPAPPKEEE 454
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
460-557 2.73e-05

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 48.26  E-value: 2.73e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  460 EPTTPKEPEPTTPKEPEPTTlkePEPTTPKEPEPTTlkePEPTTPK--EPEPTttkepesttrkEPEPTTPKEPEPTTPK 537
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVI---PDPVDPDPVDPVI---PDPVIPDpvDPDPV-----------DPEPVDPVIPDPTIPD 621
                           90       100
                   ....*....|....*....|
gi 1907070847  538 EPEPTTPkepePTTPKEPEP 557
Cdd:PRK15313   622 IGQSDTP----PITEHQFRP 637
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
565-649 2.92e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 47.88  E-value: 2.92e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  565 PTTPKEPEPTTPKEPEPTTPKKP--EPTTPKEPEPTTPKEPEPTT-PKEPEPTTPKEPEPTTRKEPEPTTPKE--PEPTT 639
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRPTPApsTRPKAAAAANIPPKEPVRETaTPPPVPPRPVAPPVPHTPESAPKLTRAaiPVDEK 441
                           90
                   ....*....|
gi 1907070847  640 PKEPEPTTPK 649
Cdd:PRK14950   442 PKYTPPAPPK 451
PRK10819 PRK10819
transport protein TonB; Provisional
522-639 3.07e-05

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 46.60  E-value: 3.07e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  522 EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPkEPEPTTPKEPEPttpkEPEPTTPKE---PEPTTPKKPEPTTPKEPEPT 598
Cdd:PRK10819    36 HQVIELPAPAQPISVTMVAPADLEPPQAVQP-PPEPVVEPEPEP----EPIPEPPKEapvVIPKPEPKPKPKPKPKPKPV 110
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1907070847  599 TPKEPEP---TTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTT 639
Cdd:PRK10819   111 KKVEEQPkreVKPVEPRPASPFENTAPARPTSSTATAAASKPVT 154
PHA03247 PHA03247
large tegument protein UL36; Provisional
320-479 3.75e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.01  E-value: 3.75e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  320 RKEPEPTTPKEPEPTTPKEPEPttPKEPEPTTPKEPEPTTlKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 399
Cdd:PHA03247   354 RRRPTWTPPSSLEDLSAGRHHP--KRASLPTRKRRSARHA-ATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPP 430
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  400 PKEPEPTtpkePEPTTPKEPEPTtpkePEPTTPKEPEPTTPKEPEPTTPKEPEptTLKEPEPTTPKEPEPTTPKEPEPTT 479
Cdd:PHA03247   431 PATPLPS----AEPGSDDGPAPP----PERQPPAPATEPAPDDPDDATRKALD--ALRERRPPEPPGADLAELLGRHPDT 500
PRK10819 PRK10819
transport protein TonB; Provisional
322-429 3.85e-05

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 46.21  E-value: 3.85e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  322 EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKePEPTTLKEPEPTTPKEPEPTTPKEPEPTtpKEPEPTTPKEPEPTTPK 401
Cdd:PRK10819    59 EPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPV-VIPKPEPKPKPKPKPKPKPVKKVEEQPK--REVKPVEPRPASPFENT 135
                           90       100
                   ....*....|....*....|....*...
gi 1907070847  402 EPEPTTPKEPEPTTPKePEPTTPKEPEP 429
Cdd:PRK10819   136 APARPTSSTATAAASK-PVTSVSSGPRA 162
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
388-612 3.86e-05

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 47.65  E-value: 3.86e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  388 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEP 467
Cdd:PTZ00441   279 EEECPVEPEPLPVPAPVPPTPEDDNPRPTDDEFAVPNFNEGLDVPDNPQDPVPPPNEGKDGNPNEENLFPPGDDEVPDES 358
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  468 E-PTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEpttpKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKE 546
Cdd:PTZ00441   359 NvPPNPPNVPGGSNSEFSSDVENPPNPPNPDIPE----QEPNIPEDSNKEVPEDVPMEPEDDRDNNFNEPKKPENKGDGQ 434
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907070847  547 PEPTTPK--EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEpEPTTPKEPEPTTPKEPE 612
Cdd:PTZ00441   435 NEPVIPKplDNERDQSNKNKQVNPGNRHNSEDRYTRPHGRNNENRNYNNK-NSDIPKHPERSEHEQPE 501
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
435-532 4.05e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 47.50  E-value: 4.05e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  435 PEPTTPKEPEPTtPKEPEPTTLKEPEPTTPKEPEPTTPKepepttlkePEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKE 514
Cdd:PRK14950   366 PQPAKPTAAAPS-PVRPTPAPSTRPKAAAAANIPPKEPV---------RETATPPPVPPRPVAPPVPHTPESAPKLTRAA 435
                           90
                   ....*....|....*....
gi 1907070847  515 -PESTTRKEPEPTTPKEPE 532
Cdd:PRK14950   436 iPVDEKPKYTPPAPPKEEE 454
PRK10263 PRK10263
DNA translocase FtsK; Provisional
352-520 4.14e-05

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 47.77  E-value: 4.14e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  352 PKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEpTTPKEPEPTTPKEPEPTTPKEPePTTPKEPEPTTPKEPEPTT 431
Cdd:PRK10263   716 PAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPV-QQPQQPVAPQQQYQQPQQPVAP-QPQYQQPQQPVAPQPQYQQ 793
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  432 PKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEP--EPTTPKEPEPT-TLKEP------------EPTTPKePEPTTL 496
Cdd:PRK10263   794 PQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQyqQPQQPVAPQPQdTLLHPllmrngdsrplhKPTTPL-PSLDLL 872
                          170       180
                   ....*....|....*....|....
gi 1907070847  497 KEPepttPKEPEPTTTKEPESTTR 520
Cdd:PRK10263   873 TPP----PSEVEPVDTFALEQMAR 892
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
515-628 4.21e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 47.40  E-value: 4.21e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  515 PESTTRKEPEPTTP---KEPEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPT 590
Cdd:PRK14951   376 AEKKTPARPEAAAPaaaPVAQAAAAPAPAAAPAAAaSAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQA 455
                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1907070847  591 TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPE 628
Cdd:PRK14951   456 APETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
501-608 4.28e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 47.40  E-value: 4.28e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  501 PTTPKEPEPTTTKEPESTTRKEPEPTTPKE----PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 576
Cdd:PRK14951   381 PARPEAAAPAAAPVAQAAAAPAPAAAPAAAasapAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETV 460
                           90       100       110
                   ....*....|....*....|....*....|..
gi 1907070847  577 KEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTP 608
Cdd:PRK14951   461 AIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
499-620 4.62e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 47.40  E-value: 4.62e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  499 PEPTTPKEPEPtttkePESTTRKEPEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 577
Cdd:PRK14951   376 AEKKTPARPEA-----AAPAAAPVAQAAAAPAPAAAPAAAaSAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPA 450
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1907070847  578 EPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 620
Cdd:PRK14951   451 PPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
468-690 4.96e-05

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 47.23  E-value: 4.96e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  468 EPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPE--PTTPKEPEPTTTKEPESTTRKEPEPTTPKEP-------EPTTPKE 538
Cdd:PLN03209   308 ETTAPLTPMEELLAKIPSQRVPPKESDAADGPKpvPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPytayedlKPPTSPI 387
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  539 PEPTTPKEPEPTT------PKEPEPTTPKEPEPTTP-KEPEPTTPKEPEPTTP--KKPEPTTPKEPEPTTPKEPEPTTPK 609
Cdd:PLN03209   388 PTPPSSSPASSKSvdavakPAEPDVVPSPGSASNVPeVEPAQVEAKKTRPLSPyaRYEDLKPPTSPSPTAPTGVSPSVSS 467
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  610 EP-EPTTPKEPEPTTRKEPEPTTPKEPEPTTP-------KEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQN 681
Cdd:PLN03209   468 TSsVPAVPDTAPATAATDAAAPPPANMRPLSPyavyddlKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHH 547

                   ....*....
gi 1907070847  682 KPEETTPAS 690
Cdd:PLN03209   548 AQPKPRPLS 556
dnaA PRK14086
chromosomal replication initiator protein DnaA;
322-518 4.99e-05

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 47.13  E-value: 4.99e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  322 EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTT-PKEPEPTTPKEPEPTtPKEPEPTTP 400
Cdd:PRK14086    89 DPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTArPAYPAYQQRPEPGAW-PRAADDYGW 167
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  401 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP-KEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTT 479
Cdd:PRK14086   168 QQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRrRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPE 247
                          170       180       190
                   ....*....|....*....|....*....|....*....
gi 1907070847  480 LKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPEST 518
Cdd:PRK14086   248 RDDAPVVPIRPSAPGPLAAQPAPAPGPGEPTARLNPKYT 286
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
513-581 5.10e-05

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 44.01  E-value: 5.10e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070847  513 KEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 581
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 109
DUF4045 pfam13254
Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. ...
549-688 5.63e-05

Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length.


Pssm-ID: 433066 [Multi-domain]  Cd Length: 415  Bit Score: 46.70  E-value: 5.63e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  549 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPePTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPE 628
Cdd:pfam13254  197 PNSFKEVTPVGLMRSPAPGGHSKSPSVSGISADSSPTKEEPSEEADT-LSTDKEQSPAPTSASEPPPKTKELPKDSEEPA 275
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907070847  629 PTTPKEPEPTTPKEP--EPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQNKPEETTP 688
Cdd:pfam13254  276 APSKSAEASTEKKEPdtESSPETSSEKSAPSLLSPVSKASIDKPLSSPDRDPLSPKPKPQSP 337
TonB COG0810
Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope ...
524-650 5.86e-05

Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 223880 [Multi-domain]  Cd Length: 244  Bit Score: 45.93  E-value: 5.86e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  524 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPkepepttPKKPEPTTPKEPEPTTPKEP 603
Cdd:COG0810     35 ELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEK-------PKPEKKPKKPKPKPKPKPKP 107
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1907070847  604 EPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPKK 650
Cdd:COG0810    108 KPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSAS 154
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
377-457 6.74e-05

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 44.01  E-value: 6.74e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  377 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPttpkEPEPTTL 456
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP----EPGAATL 116

                   .
gi 1907070847  457 K 457
Cdd:pfam05887  117 K 117
PRK10819 PRK10819
transport protein TonB; Provisional
387-516 7.26e-05

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 45.44  E-value: 7.26e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  387 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKEPEPttLKEPEPTTPK 465
Cdd:PRK10819    42 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPvVIPKPEPKPKPKPKPKPKP--VKKVEEQPKR 119
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1907070847  466 EPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKePEPTTPKEPEPTTTKEPE 516
Cdd:PRK10819   120 EVKPVEPRPASPFENTAPARPTSSTATAAASK-PVTSVSSGPRALSRNQPQ 169
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
443-678 7.71e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 47.09  E-value: 7.71e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  443 PEPTTPKEPEPTTL-KEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTtlkePEPTTPKEPEPTTTKEPESTTRK 521
Cdd:PHA03307    65 FEPPTGPPPGPGTEaPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPP----PPTPPPASPPPSPAPDLSEMLRP 140
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  522 EPEPTTPKEPEPttPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPK 601
Cdd:PHA03307   141 VGSPGPPPAASP--PAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASAS 218
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070847  602 EPEPTTPKEPEPTTPKEPEPTTRKEPePTTPKEPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEE 678
Cdd:PHA03307   219 SPAPAPGRSAADDAGASSSDSSSSES-SGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRER 294
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
317-394 7.85e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 46.81  E-value: 7.85e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907070847  317 STTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 394
Cdd:PRK12270    40 STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
361-429 8.32e-05

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 43.63  E-value: 8.32e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070847  361 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 429
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 109
PHA03264 PHA03264
envelope glycoprotein D; Provisional
542-647 8.48e-05

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 46.15  E-value: 8.48e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  542 TTPKEPEPTTPKEPEPTtPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 621
Cdd:PHA03264   253 VVPPYFEESKGYEPPPA-PSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPGPPRPAPD 331
                           90       100
                   ....*....|....*....|....*..
gi 1907070847  622 TTRKEPEPTTPKEP-EPTTPKEPEPTT 647
Cdd:PHA03264   332 ADRPEGWPSLEAITfPPPTPATPAVPR 358
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
505-573 8.48e-05

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 43.63  E-value: 8.48e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070847  505 KEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 573
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 109
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
401-481 8.65e-05

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 43.63  E-value: 8.65e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  401 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPttpkEPEPTTL 480
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP----EPGAATL 116

                   .
gi 1907070847  481 K 481
Cdd:pfam05887  117 K 117
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
483-562 8.69e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 46.81  E-value: 8.69e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  483 PEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 562
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
505-649 8.88e-05

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 411407 [Multi-domain]  Cd Length: 684  Bit Score: 46.54  E-value: 8.88e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  505 KEPEPTTTKEPESTTRKEPEPTTPKEPEPTtpKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPeptTPKEPEPTTP 584
Cdd:NF033838   351 KEAELELVKEEAKEPRNEEKIKQAKAKVES--KKAEATRLEKIKTDRKKAEEEAKRKAAEEDKVKEK---PAEQPQPAPA 425
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070847  585 KKPEPTTPKEPEPT-TPKEPEPTTPKEPEPTTPKEPEpttrkEPEPTTPKEPePTTPKEPEPTTPK 649
Cdd:NF033838   426 PQPEKPAPKPEKPAeQPKAEKPADQQAEEDYARRSEE-----EYNRLTQQQP-PKTEKPAQPSTPK 485
PRK11633 PRK11633
cell division protein DedD; Provisional
320-416 8.98e-05

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 44.99  E-value: 8.98e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  320 RKEPEPTTP-KEPEPTTPKEPEPTTPKEPEPTTPkEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPt 398
Cdd:PRK11633    50 RDEPDMMPAaTQALPTQPPEGAAEAVRAGDAAAP-SLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEA- 127
                           90
                   ....*....|....*...
gi 1907070847  399 tPKEPEPTTPKEPEPTTP 416
Cdd:PRK11633   128 -PPAPKPEPKPVVEEKAA 144
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
322-440 9.10e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 46.41  E-value: 9.10e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  322 EPEPTTPKEPEPTTP---KEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEP--TTPKEPEPTTPKEPE 396
Cdd:PRK12323   449 APAPAPAAAPAAAARpaaAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPaqPDAAPAGWVAESIPD 528
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 1907070847  397 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE--PTTPKEPEPTTP 440
Cdd:PRK12323   529 PATADPDDAFETLAPAPAAAPAPRAAAATEPVvaPRPPRASASGLP 574
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
345-413 9.89e-05

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 43.24  E-value: 9.89e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070847  345 KEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 413
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 109
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
328-476 1.03e-04

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 46.13  E-value: 1.03e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  328 PKEPEPTT-PKEPEPTTPKEPEPTTPKEP-EPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKePEPTTPKEPEP 405
Cdd:PRK13108   295 ALEREPAElAAAAVASAASAVGPVGPGEPnQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPA-VEETSEADIER 373
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907070847  406 TTPKEPEPTTPKEPEPTTPKEPE-PTTPKEPEPTTPKEPEPTTPKEPEPTT-LKEPEPTTPKEPEPtTPKEPE 476
Cdd:PRK13108   374 EQPGDLAGQAPAAHQVDAEAASAaPEEPAALASEAHDETEPEVPEKAAPIPdPAKPDELAVAGPGD-DPAEPD 445
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
515-690 1.06e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 46.11  E-value: 1.06e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  515 PESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKE 594
Cdd:PRK14948   366 SEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATT--PSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLNLEE 443
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  595 ---------PEPTT------------------------------------------------------PKEPEPTTPKEP 611
Cdd:PRK14948   444 lwqqilaklELPSTrmllsqqaelvsldsnraviavspnwlgmvqsrkplleqafakvlgrsiklnleSQSGSASNTAKT 523
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070847  612 EPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPKKpeptttspktttlkATTLAPKVTAPAEEIQNKPEETTPAS 690
Cdd:PRK14948   524 PPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQA--------------SSNAPAQIPADSSPPPPIPEEPTPSP 588
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
321-389 1.08e-04

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 43.24  E-value: 1.08e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070847  321 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 389
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 109
PRK10263 PRK10263
DNA translocase FtsK; Provisional
323-636 1.09e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 46.62  E-value: 1.09e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  323 PEPTTPKEPEPTTPKEPEPTTPKE---PEPTTPKEPEPTTLKE---PEPTTPKEPE-PTTPKEPEPTTPKEP--EPTTPK 393
Cdd:PRK10263   423 PAPEQPAQQPYYAPAPEQPVAGNAwqaEEQQSTFAPQSTYQTEqtyQQPAAQEPLYqQPQPVEQQPVVEPEPvvEETKPA 502
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  394 EPEPTTPKEPEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPKEPEPTTPKEP--EPTTPKEPEPTTLKEPEPTT------- 463
Cdd:PRK10263   503 RPPLYYFEEVEEKRAREREQLAAwYQPIPEPVKEPEPIKSSLKAPSVAAVPpvEAAAAVSPLASGVKKATLATgaaatva 582
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  464 -------------PKEPEPTTPKEPEPTTLKEPeptTPKEPEPTTLKEP------------------------------- 499
Cdd:PRK10263   583 apvfslansggprPQVKEGIGPQLPRPKRIRVP---TRRELASYGIKLPsqraaeekareaqrnqydsgdqynddeidam 659
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  500 ---------------------EPTTPKEPEPTTTKEPESTTRK------------EPEPTTP-----------KEPEPTT 535
Cdd:PRK10263   660 qqdelarqfaqtqqqrygeqyQHDVPVNAEDADAAAEAELARQfaqtqqqrysgeQPAGANPfslddfefspmKALLDDG 739
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  536 PKEP--EPTTPKEPEPTTPKEPEPTTPKEPEPTTP----KEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEpttPK 609
Cdd:PRK10263   740 PHEPlfTPIVEPVQQPQQPVAPQQQYQQPQQPVAPqpqyQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQ---PQ 816
                          410       420
                   ....*....|....*....|....*..
gi 1907070847  610 EPEPTTPKEPEPTTRKEPEPTTPKEPE 636
Cdd:PRK10263   817 YQQPQQPVAPQPQYQQPQQPVAPQPQD 843
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
323-404 1.14e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 45.96  E-value: 1.14e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  323 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK-EPEPTTLKEPEPTTPkePEPTTPKEPEPTTPKE-PEPTTPKEPEPTTP 400
Cdd:PRK14950   373 AAAPSPVRPTPAPSTRPKAAAAANIPPKEPVrETATPPPVPPRPVAP--PVPHTPESAPKLTRAAiPVDEKPKYTPPAPP 450

                   ....
gi 1907070847  401 KEPE 404
Cdd:PRK14950   451 KEEE 454
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
337-405 1.19e-04

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 43.24  E-value: 1.19e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070847  337 KEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 405
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 109
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
459-576 1.22e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 45.86  E-value: 1.22e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  459 PEPTTPKEPEPTTP-KEPEPTTlkePEPTTPKEPEPTTLKEP-EPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTP 536
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQA---AAAPAPAAAPAAAASAPaAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPP 452
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1907070847  537 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 576
Cdd:PRK14951   453 AQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
317-396 1.23e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 45.96  E-value: 1.23e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  317 STTRKEPEPTTPKEPEPTTPKEPEPTTPKePEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKEP 395
Cdd:PRK14950   375 APSPVRPTPAPSTRPKAAAAANIPPKEPV-RETATPPPVPPRPVAPPVPHTPESAPKLTRAAiPVDEKPKYTPPAPPKEE 453

                   .
gi 1907070847  396 E 396
Cdd:PRK14950   454 E 454
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
417-497 1.25e-04

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 43.24  E-value: 1.25e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  417 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPttpkEPEPTTL 496
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP----EPGAATL 116

                   .
gi 1907070847  497 K 497
Cdd:pfam05887  117 K 117
dnaA PRK14086
chromosomal replication initiator protein DnaA;
363-558 1.26e-04

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 45.97  E-value: 1.26e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  363 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT-PKEPEPTTPKEPEPTtPKEPEPTTPKEPEPTTPK 441
Cdd:PRK14086    98 PPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTArPAYPAYQQRPEPGAW-PRAADDYGWQQQRLGFPP 176
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  442 EPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTlkEPEPTTPKEpEPTTLKEPEPTTPKEPEptTTKEPESTTRK 521
Cdd:PRK14086   177 RAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHP--RPDWDRPRR-DRTDRPEPPPGAGHVHR--GGPGPPERDDA 251
                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 1907070847  522 EPEPTTPKEPEPTtPKEPEPTtPKEPEPTTPKEPEPT 558
Cdd:PRK14086   252 PVVPIRPSAPGPL-AAQPAPA-PGPGEPTARLNPKYT 286
TonB COG0810
Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope ...
343-490 1.29e-04

Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 223880 [Multi-domain]  Cd Length: 244  Bit Score: 44.78  E-value: 1.29e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  343 TPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK-EPEP 421
Cdd:COG0810     24 VFLHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKpKPKP 103
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070847  422 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKE 490
Cdd:COG0810    104 KPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLSGLRRAIRRAPRYPAQ 172
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
569-637 1.34e-04

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 42.86  E-value: 1.34e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070847  569 KEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEP 637
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 109
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
484-644 1.44e-04

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 45.73  E-value: 1.44e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  484 EPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 563
Cdd:PTZ00441   279 EEECPVEPEPLPVPAPVPPTPEDDNPRPTDDEFAVPNFNEGLDVPDNPQDPVPPPNEGKDGNPNEENLFPPGDDEVPDES 358
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  564 epttpkePEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEpttpKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEP 643
Cdd:PTZ00441   359 -------NVPPNPPNVPGGSNSEFSSDVENPPNPPNPDIPE----QEPNIPEDSNKEVPEDVPMEPEDDRDNNFNEPKKP 427

                   .
gi 1907070847  644 E 644
Cdd:PTZ00441   428 E 428
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
320-467 1.45e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 45.87  E-value: 1.45e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  320 RKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT--PKEPEP 397
Cdd:PRK14949   637 KKSSADRKPKTPPSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVPDPYDrpPWEEAP 716
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907070847  398 TTpkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE--PTTPKEPEPTTPKEPEPTTLKEPEPTTPKEP 467
Cdd:PRK14949   717 EV--ASANDGPNNAAEGNLSESVEDASNSELQAVEQQAThqPQVQAEAQSPASTTALTQTSSEVQDTELNLV 786
PRK10819 PRK10819
transport protein TonB; Provisional
434-573 1.48e-04

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 44.67  E-value: 1.48e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  434 EPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPkEPEPTTPKEPEPTTLKEPEPTTPKepepttlkePEPTTPKEPEPTTTK 513
Cdd:PRK10819    36 HQVIELPAPAQPISVTMVAPADLEPPQAVQP-PPEPVVEPEPEPEPIPEPPKEAPV---------VIPKPEPKPKPKPKP 105
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  514 EPESTTRKEPEPTtpKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKePEPTTPKEPEP 573
Cdd:PRK10819   106 KPKPVKKVEEQPK--REVKPVEPRPASPFENTAPARPTSSTATAAASK-PVTSVSSGPRA 162
PRK11633 PRK11633
cell division protein DedD; Provisional
520-616 1.60e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 44.22  E-value: 1.60e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  520 RKEPEPTTP-KEPEPTTPKEPEPTTPKEPEPTTPkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPt 598
Cdd:PRK11633    50 RDEPDMMPAaTQALPTQPPEGAAEAVRAGDAAAP-SLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEA- 127
                           90
                   ....*....|....*...
gi 1907070847  599 tPKEPEPTTPKEPEPTTP 616
Cdd:PRK11633   128 -PPAPKPEPKPVVEEKAA 144
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
561-629 1.60e-04

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 42.86  E-value: 1.60e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070847  561 KEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEP 629
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 109
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
317-493 1.65e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 45.85  E-value: 1.65e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  317 STTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKePEPTTPKEPEPTTPKEPEPTTPKEPE 396
Cdd:PRK08691   400 AETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPDEAQTAAGTAQT-SAKSIQTASEAETPPENQVSKNKAAD 478
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  397 PTTPKEPEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE---PEPTTLKEPEPTTPKEPEpttp 472
Cdd:PRK08691   479 NETDAPLSEVPSENPIQATPnDEAVETETFAHEAPAEPFYGYGFPDNDCPPEDGAeipPPDWEHAAPADTAGGGAD---- 554
                          170       180
                   ....*....|....*....|.
gi 1907070847  473 KEPEPTTLKEPEptTPKEPEP 493
Cdd:PRK08691   555 EEAEAGGIGGNN--TPSAPPP 573
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
545-613 1.66e-04

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 42.86  E-value: 1.66e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070847  545 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEP 613
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 109
PRK10819 PRK10819
transport protein TonB; Provisional
539-649 1.70e-04

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 44.29  E-value: 1.70e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  539 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTtPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 618
Cdd:PRK10819    42 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPP-KEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKRE 120
                           90       100       110
                   ....*....|....*....|....*....|.
gi 1907070847  619 PEPTTRKEPEPTTPKEPEPTTPKEPEPTTPK 649
Cdd:PRK10819   121 VKPVEPRPASPFENTAPARPTSSTATAAASK 151
PRK11633 PRK11633
cell division protein DedD; Provisional
523-621 1.72e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 44.22  E-value: 1.72e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  523 PEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPKEPEPTTPkEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPK 601
Cdd:PRK11633    45 PKPGDRDEPDMMPAaTQALPTQPPEGAAEAVRAGDAAAP-SLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQ 123
                           90       100
                   ....*....|....*....|
gi 1907070847  602 EPEPTTPKEPEPTTPKEPEP 621
Cdd:PRK11633   124 KVEAPPAPKPEPKPVVEEKA 143
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
459-538 1.78e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 45.65  E-value: 1.78e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  459 PEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKE 538
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PHA03369 PHA03369
capsid maturational protease; Provisional
531-634 1.84e-04

capsid maturational protease; Provisional


Pssm-ID: 223061 [Multi-domain]  Cd Length: 663  Bit Score: 45.38  E-value: 1.84e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  531 PEPTTPKEP--EPTTPKEPEP-TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEP-EPTTPKEPEPT 606
Cdd:PHA03369   354 TAPSRVLAAaaKVAVIAAPQThTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDPGLVSPYNPqSPGTSYGPEPV 433
                           90       100
                   ....*....|....*....|....*...
gi 1907070847  607 TPKEPEPTTPKEPEPTTRKEPEPTTPKE 634
Cdd:PHA03369   434 GPVPPQPTNPYVMPISMANMVYPGHPQE 461
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
400-555 1.89e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 45.49  E-value: 1.89e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  400 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE--PTTLKEPEPTTPKEPEPTTPKEPEP 477
Cdd:PRK14949   637 KKSSADRKPKTPPSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEaaLASGSAPAPPPVPDPYDRPPWEEAP 716
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907070847  478 TTlkEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPesttrkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 555
Cdd:PRK14949   717 EV--ASANDGPNNAAEGNLSESVEDASNSELQAVEQQA------THQPQVQAEAQSPASTTALTQTSSEVQDTELNLV 786
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
469-564 2.05e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 45.19  E-value: 2.05e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  469 PTTPKEPEPTTLKEPEPTTPK--EPEPTTLKEPEPTTPKEPEPTTTKEPESTtrkePEPTTPkePEPTTPKEPEPTTPKE 546
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRPTpaPSTRPKAAAAANIPPKEPVRETATPPPVP----PRPVAP--PVPHTPESAPKLTRAA 435
                           90
                   ....*....|....*....
gi 1907070847  547 -PEPTTPKEPEPTTPKEPE 564
Cdd:PRK14950   436 iPVDEKPKYTPPAPPKEEE 454
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
529-597 2.17e-04

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 42.47  E-value: 2.17e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070847  529 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEP 597
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 109
PRK11633 PRK11633
cell division protein DedD; Provisional
469-568 2.30e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 43.84  E-value: 2.30e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  469 PTTPK---EPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEP--EPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTT 543
Cdd:PRK11633    42 PLVPKpgdRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPslDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKP 121
                           90       100
                   ....*....|....*....|....*
gi 1907070847  544 PKEPEPttPKEPEPTTPKEPEPTTP 568
Cdd:PRK11633   122 QQKVEA--PPAPKPEPKPVVEEKAA 144
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
501-689 2.40e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 45.25  E-value: 2.40e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  501 PTTPKEPEPTTTKEPESTTRKEPEPTTPkepEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 580
Cdd:PRK12323   375 ATAAAAPVAQPAPAAAAPAAAAPAPAAP---PAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  581 PTTPKKPEPTTPKEPEPttpkePEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTTSPKT 660
Cdd:PRK12323   452 PAPAAAPAAAARPAAAG-----PRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESI 526
                          170       180
                   ....*....|....*....|....*....
gi 1907070847  661 TTLKATTLAPKVTAPAEEIQNKPEETTPA 689
Cdd:PRK12323   527 PDPATADPDDAFETLAPAPAAAPAPRAAA 555
TonB COG0810
Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope ...
404-546 2.52e-04

Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 223880 [Multi-domain]  Cd Length: 244  Bit Score: 44.01  E-value: 2.52e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  404 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTtlkePEPTTPKEPEPTTPKePEPTTLKEP 483
Cdd:COG0810     35 ELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPK----EKPKPEKKPKKPKPK-PKPKPKPKP 109
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907070847  484 EPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKE 546
Cdd:COG0810    110 KVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLSGLRRAIRRAPRYPAQ 172
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
317-543 2.55e-04

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 436069 [Multi-domain]  Cd Length: 480  Bit Score: 44.91  E-value: 2.55e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  317 STTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 396
Cdd:pfam17823  174 SSAPATLTPASGISTAATATGHPAAGTALAAVGNSSPAAGTVTAAVGTVTPAALATLAAAAGTVASAAGTINTGDPHARR 253
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  397 PTTPKE-PEPTTPKEPEPTTPKEPEPTTPK----EPEPTTPKEPEPT-TPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPT 470
Cdd:pfam17823  254 LSPAKHmPSDTSARNPAAPSGAQAQGLIIQvstdQPVHNTAGEPTPSpSNTTLEPNTPKSVASTNLAVVTTTKAQAKEPS 333
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907070847  471 TPKEPEPTTLKEPE-----PTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTT 543
Cdd:pfam17823  334 ASPVPVLHTSMIPEveatsPTTQPSPLLPTQGAAGPGILLAPDQVATDATAGTASAGPTPRSSGDPKMLAMASCQLST 411
TonB COG0810
Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope ...
319-466 2.61e-04

Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 223880 [Multi-domain]  Cd Length: 244  Bit Score: 44.01  E-value: 2.61e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  319 TRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK-EPEP 397
Cdd:COG0810     24 VFLHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKpKPKP 103
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070847  398 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKE 466
Cdd:COG0810    104 KPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLSGLRRAIRRAPRYPAQ 172
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
550-633 2.63e-04

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 44.24  E-value: 2.63e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  550 TTPKEPEPTTPKEPEPTTPKEPEPTT-PKEPEPttpkKPEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKepEPTTRKEP 627
Cdd:PRK13042    23 TTTQAANATTPSSTKVEAPQSTPPSTkVEAPQS----KPNATTPPSTKVEAPQQtPNATTPSSTKVETPQ--SPTTKQVP 96

                   ....*.
gi 1907070847  628 EPTTPK 633
Cdd:PRK13042    97 TEINPK 102
PHA03379 PHA03379
EBNA-3A; Provisional
328-571 2.74e-04

EBNA-3A; Provisional


Pssm-ID: 223066 [Multi-domain]  Cd Length: 935  Bit Score: 45.05  E-value: 2.74e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  328 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 407
Cdd:PHA03379   408 ASEPTYGTPRPPVEKPRPEVPQSLETATSHGSAQVPEPPPVHDLEPGPLHDQHSMAPCPVAQLPPGPLQDLEPGDQLPGV 487
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  408 PKEPEPTTPKEPEPTTPKepepTTPKEPEPTTPKEPEPtTPKEPEPTTLK-EPEPTTPKEpEPTTPKEPEPTTLKEPEPT 486
Cdd:PHA03379   488 VQDGRPACAPVPAPAGPI----VRPWEASLSQVPGVAF-APVMPQPMPVEpVPVPTVALE-RPVCPAPPLIAMQGPGETS 561
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  487 TPKEPEPTTLKEP-EPTTPKEPEPTTTKEPESTTRKEPEP-TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 564
Cdd:PHA03379   562 GIVRVRERWRPAPwTPNPPRSPSQMSVRDRLARLRAEAQPyQASVEVQPPQLTQVSPQQPMEYPLEPEQQMFPGSPFSQV 641

                   ....*..
gi 1907070847  565 PTTPKEP 571
Cdd:PHA03379   642 ADVMRAG 648
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
497-565 2.95e-04

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 42.09  E-value: 2.95e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070847  497 KEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 565
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 109
TonB COG0810
Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope ...
460-602 3.07e-04

Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 223880 [Multi-domain]  Cd Length: 244  Bit Score: 43.62  E-value: 3.07e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  460 EPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPEsttrKEPEPTTPKePEPTTPKEP 539
Cdd:COG0810     35 ELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPE----KKPKKPKPK-PKPKPKPKP 109
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907070847  540 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKE 602
Cdd:COG0810    110 KVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLSGLRRAIRRAPRYPAQ 172
PHA03264 PHA03264
envelope glycoprotein D; Provisional
374-479 3.35e-04

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 44.23  E-value: 3.35e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  374 TTPKEPEPTTPKEPEPTtPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 453
Cdd:PHA03264   253 VVPPYFEESKGYEPPPA-PSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPGPPRPAPD 331
                           90       100
                   ....*....|....*....|....*..
gi 1907070847  454 TTLKEPEPTTPKEP-EPTTPKEPEPTT 479
Cdd:PHA03264   332 ADRPEGWPSLEAITfPPPTPATPAVPR 358
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
489-557 3.44e-04

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 41.70  E-value: 3.44e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070847  489 KEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 557
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 109
dnaA PRK14086
chromosomal replication initiator protein DnaA;
376-598 3.65e-04

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 44.43  E-value: 3.65e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  376 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPkepePTTPKEPEPttpkePEPTT 455
Cdd:PRK14086    87 TVDPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTAR----PAYPAYQQR-----PEPGA 157
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  456 LKEPEPTTPKEPEPTTPKEPEPttlkepePTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRkePEPTTPKEPEPTT 535
Cdd:PRK14086   158 WPRAADDYGWQQQRLGFPPRAP-------YASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPR--PDWDRPRRDRTDR 228
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907070847  536 PkEPEPTTPKEPEPTTPKEPEPTTPKEPEptTPKEPEPtTPKEPEPtTPKKPEPTTPKEPEPT 598
Cdd:PRK14086   229 P-EPPPGAGHVHRGGPGPPERDDAPVVPI--RPSAPGP-LAAQPAP-APGPGEPTARLNPKYT 286
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
441-521 3.72e-04

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 41.70  E-value: 3.72e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  441 KEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPttlkEPEPTTPKEPEPTTTKEPESTTR 520
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP----EPEPEPEPEPEPEPEPEPGAATL 116

                   .
gi 1907070847  521 K 521
Cdd:pfam05887  117 K 117
TonB COG0810
Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope ...
508-648 3.75e-04

Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 223880 [Multi-domain]  Cd Length: 244  Bit Score: 43.24  E-value: 3.75e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  508 EPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPttpkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKP 587
Cdd:COG0810     35 ELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETP-----PEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKP 109
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070847  588 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTP 648
Cdd:COG0810    110 KVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLSGLRRAIRRAPRYP 170
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
318-373 3.75e-04

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 41.70  E-value: 3.75e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070847  318 TTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEP 373
Cdd:pfam05887   54 TNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 109
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
353-625 3.88e-04

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 411407 [Multi-domain]  Cd Length: 684  Bit Score: 44.62  E-value: 3.88e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  353 KEPEPTTLKEPEptTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE-------PEPTTPKEPEpTTPKEPEPTTPK 425
Cdd:NF033838   216 KKAEATRLEKIK--TDREKAEEEAKRRADAKLKEAVEKNVATSEQDKPKRrakrgvlGEPATPDKKE-NDAKSSDSSVGE 292
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  426 EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPE----PT-TPKEPE------PTTPKEPEPTTLKEpEPTTPKEPEPt 494
Cdd:NF033838   293 ETLPSPSLKPEKKVAEAEKKVEEAKKKAKDQKEEDrrnyPTnTYKTLEleiaesDVKVKEAELELVKE-EAKEPRNEEK- 370
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  495 tLKEP-EPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEpEPTTPKEPEPTtpkePEPTTPKePEPTTPKEpep 573
Cdd:NF033838   371 -IKQAkAKVESKKAEATRLEKIKTDRKKAEEEAKRKAAEEDKVKE-KPAEQPQPAPA----PQPEKPA-PKPEKPAE--- 440
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1907070847  574 tTPKEPEPTTPKKPEPTTPKEPEpttpkEPEPTTPKEPePTTPKEPEPTTRK 625
Cdd:NF033838   441 -QPKAEKPADQQAEEDYARRSEE-----EYNRLTQQQP-PKTEKPAQPSTPK 485
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
317-477 3.90e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 44.46  E-value: 3.90e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  317 STTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP---- 392
Cdd:PRK07003   438 RGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPaaas 517
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  393 KEPEPTTPKEPEPTTPkEPEPTTPKEP--------------------------EPTTPKEPEPTTPKEPEPTTPKEPEPT 446
Cdd:PRK07003   518 REDAPAAAAPPAPEAR-PPTPAAAAPAaraggaaaaldvlrnagmrvssdrgaRAAAAAKPAAAPAAAPKPAAPRVAVQV 596
                          170       180       190
                   ....*....|....*....|....*....|..
gi 1907070847  447 -TPKEPEPTTLKEPEPTTPKEPEPTTPKEPEP 477
Cdd:PRK07003   597 pTPRARAATGDAPPNGAARAEQAAESRGAPPP 628
PRK10819 PRK10819
transport protein TonB; Provisional
547-650 4.08e-04

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 43.13  E-value: 4.08e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  547 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTtPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKE 626
Cdd:PRK10819    42 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPP-KEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKRE 120
                           90       100
                   ....*....|....*....|....
gi 1907070847  627 PEPTTPKEPEPTTPKEPEPTTPKK 650
Cdd:PRK10819   121 VKPVEPRPASPFENTAPARPTSST 144
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
322-504 4.20e-04

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 44.15  E-value: 4.20e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  322 EPEPTTPKEPEPTTPKEPE-----------------------PTTPKEPEPTTPKEPEPTTL----KEPEPTTPKEPEPT 374
Cdd:PLN03209   340 KPVPTKPVTPEAPSPPIEEeppqpkavvprplspytayedlkPPTSPIPTPPSSSPASSKSVdavaKPAEPDVVPSPGSA 419
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  375 T---PKEPEPTTPKEPEPTTP--KEPEPTTPKEPEPTTPKEPEPTT------PKEPEPTTPKEPEPTTPKEPEPTTPKEP 443
Cdd:PLN03209   420 SnvpEVEPAQVEAKKTRPLSPyaRYEDLKPPTSPSPTAPTGVSPSVsstssvPAVPDTAPATAATDAAAPPPANMRPLSP 499
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070847  444 EPTTPKEPEPTTlkePEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTP 504
Cdd:PLN03209   500 YAVYDDLKPPTS---PSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKPRPLSP 557
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
376-528 4.43e-04

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 44.20  E-value: 4.43e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  376 PKEPEPTT-PKEPEPTTPKEPEPTTPKEP-EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP--KEP 451
Cdd:PRK13108   295 ALEREPAElAAAAVASAASAVGPVGPGEPnQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEAdiERE 374
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070847  452 EPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPtTPKEPEPTTTKEPesttrkEPEPTTP 528
Cdd:PRK13108   375 QPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIP-DPAKPDELAVAGP------GDDPAEP 444
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
435-552 4.44e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 44.32  E-value: 4.44e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  435 PEPTTPKEPEPTTP-KEPEPTTlkePEPTTPKEPEPT-TPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTT 512
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQA---AAAPAPAAAPAAaASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPP 452
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1907070847  513 KEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 552
Cdd:PRK14951   453 AQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PHA03247 PHA03247
large tegument protein UL36; Provisional
445-672 4.47e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.54  E-value: 4.47e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  445 PTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTT-PKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEP 523
Cdd:PHA03247   255 PAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVwGAALAGAPLALPAPPDPPPPAPAGDAEEEDDEDGAM 334
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  524 EPTTPKepepTTPKEPEPTT-PKEPEPTTpkepepTTPKEPEPTTPKEPEPttPKEPEPTTPKKPEPTTpKEPEPTTPKE 602
Cdd:PHA03247   335 EVVSPL----PRPRQHYPLGfPKRRRPTW------TPPSSLEDLSAGRHHP--KRASLPTRKRRSARHA-ATPFARGPGG 401
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907070847  603 PEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPT-TPKEPE-PTTPKKPEPTTTSPKTTTLKATTLAPKV 672
Cdd:PHA03247   402 DDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSaEPGSDDgPAPPPERQPPAPATEPAPDDPDDATRKA 473
PRK10263 PRK10263
DNA translocase FtsK; Provisional
265-645 4.50e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 44.31  E-value: 4.50e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  265 PKEPEPTTPKEPPPTTKKPEPTTPKEPEPTTPKEPEPTTTKEPEPTTTKEPESTTRKEPEPTtpkePEPTTPKEPEPTTP 344
Cdd:PRK10263   374 APAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYA----PAPEQPVAGNAWQA 449
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  345 KEPEPttPKEPEPTTLKE---PEPTTPKEPE-PTTPKEPEPTTPKEP--EPTTPKEPEPTTPKEPEPTTPKEPEPTTP-K 417
Cdd:PRK10263   450 EEQQS--TFAPQSTYQTEqtyQQPAAQEPLYqQPQPVEQQPVVEPEPvvEETKPARPPLYYFEEVEEKRAREREQLAAwY 527
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  418 EPEPTTPKEPEPTTPKEPEPTTPKEP--EPTTPKEPEPTTLKEPEPTT--------------------PKEPEPTTPKEP 475
Cdd:PRK10263   528 QPIPEPVKEPEPIKSSLKAPSVAAVPpvEAAAAVSPLASGVKKATLATgaaatvaapvfslansggprPQVKEGIGPQLP 607
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  476 EPTTLKEPeptTPKEPEPTTLKEPEPTTPKE------------------------------------------------- 506
Cdd:PRK10263   608 RPKRIRVP---TRRELASYGIKLPSQRAAEEkareaqrnqydsgdqynddeidamqqdelarqfaqtqqqrygeqyqhdv 684
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  507 ----------PEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP--EPTTPKEPEPTTPKEPEPT 574
Cdd:PRK10263   685 pvnaedadaaAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPlfTPIVEPVQQPQQPVAPQQQ 764
                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070847  575 TPKEPEPTTP----KKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEP--EPTTPKEPEP 645
Cdd:PRK10263   765 YQQPQQPVAPqpqyQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQyqQPQQPVAPQP 841
PRK11633 PRK11633
cell division protein DedD; Provisional
368-472 4.52e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 43.07  E-value: 4.52e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  368 PKEPEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPKEPEPTTPkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPT 446
Cdd:PRK11633    42 PLVPKPGDRDEPDMMPAaTQALPTQPPEGAAEAVRAGDAAAP-SLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPK 120
                           90       100
                   ....*....|....*....|....*.
gi 1907070847  447 TPKEPEPTtlKEPEPTTPKEPEPTTP 472
Cdd:PRK11633   121 PQQKVEAP--PAPKPEPKPVVEEKAA 144
PRK11633 PRK11633
cell division protein DedD; Provisional
485-601 4.60e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 43.07  E-value: 4.60e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  485 PTTPK---EPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPttpkepepttpkepEPTTPK 561
Cdd:PRK11633    42 PLVPKpgdRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEP--------------APVEPP 107
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1907070847  562 EPEPTTPKEPEPTTPKEPEPTTPKKPEPtTPKEPEPTTPK 601
Cdd:PRK11633   108 KPKPVEKPKPKPKPQQKVEAPPAPKPEP-KPVVEEKAAPT 146
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
322-434 4.63e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 44.09  E-value: 4.63e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  322 EPEPTTPKEPEPTTP--KEPEPTTPKEPEPTTPKEPEPTTlKEPEPTTPKEPEPTTPKEPepttPKEPEPTTPKEPEPTT 399
Cdd:PRK07994   414 PLPETTSQLLAARQQlqRAQGATKAKKSEPAAASRARPVN-SALERLASVRPAPSALEKA----PAKKEAYRWKATNPVE 488
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070847  400 PKEPEPTTPKEPEP--TTPKEPEPTTPKEPEPTTPKE 434
Cdd:PRK07994   489 VKKEPVATPKALKKalEHEKTPELAAKLAAEAIERDP 525
PRK11633 PRK11633
cell division protein DedD; Provisional
544-648 4.69e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 42.68  E-value: 4.69e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  544 PKEPEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPKEPEPTTPKKpEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPT 622
Cdd:PRK11633    42 PLVPKPGDRDEPDMMPAaTQALPTQPPEGAAEAVRAGDAAAPSL-DPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPK 120
                           90       100
                   ....*....|....*....|....*.
gi 1907070847  623 TRKEPEPttPKEPEPTTPKEPEPTTP 648
Cdd:PRK11633   121 PQQKVEA--PPAPKPEPKPVVEEKAA 144
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
481-549 4.77e-04

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 41.32  E-value: 4.77e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070847  481 KEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 549
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 109
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
586-650 5.05e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 44.11  E-value: 5.05e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907070847  586 KPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPKK 650
Cdd:PRK12270    37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPA 101
DUF4045 pfam13254
Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. ...
321-469 5.06e-04

Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length.


Pssm-ID: 433066 [Multi-domain]  Cd Length: 415  Bit Score: 43.62  E-value: 5.06e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  321 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP-------TTLKEPEPTTPKEPEPTTPKEPEP---TTPKEPEPT 390
Cdd:pfam13254  201 KEVTPVGLMRSPAPGGHSKSPSVSGISADSSPTKEEPseeadtlSTDKEQSPAPTSASEPPPKTKELPkdsEEPAAPSKS 280
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  391 TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKePEPTTPKEPEPTTLK--EPEPTTPKEPE 468
Cdd:pfam13254  281 AEASTEKKEPDTESSPETSSEKSAPSLLSPVSKASIDKPLSSPDRDPLSPK-PKPQSPPKDFRANLRsrEVPKDKSKKDE 359

                   .
gi 1907070847  469 P 469
Cdd:pfam13254  360 P 360
TonB COG0810
Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope ...
359-506 5.37e-04

Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 223880 [Multi-domain]  Cd Length: 244  Bit Score: 42.85  E-value: 5.37e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  359 TLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK-EPEP 437
Cdd:COG0810     24 VFLHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKpKPKP 103
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070847  438 TTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKE 506
Cdd:COG0810    104 KPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLSGLRRAIRRAPRYPAQ 172
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
547-648 5.45e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.93  E-value: 5.45e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  547 PEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPkePEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP--KEPEPTT 623
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAvaLAPAPPA 453
                           90       100
                   ....*....|....*....|....*...
gi 1907070847  624 RKEPEPTTPK---EPEPTTPKEPEPTTP 648
Cdd:PRK14951   454 QAAPETVAIPvrvAPEPAVASAAPAPAA 481
PRK11633 PRK11633
cell division protein DedD; Provisional
376-477 5.52e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 42.68  E-value: 5.52e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  376 PKEPEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPKEPEPTTPkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPT 454
Cdd:PRK11633    42 PLVPKPGDRDEPDMMPAaTQALPTQPPEGAAEAVRAGDAAAP-SLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPK 120
                           90       100
                   ....*....|....*....|...
gi 1907070847  455 TLKEPEPTTPKEPEPTTPKEPEP 477
Cdd:PRK11633   121 PQQKVEAPPAPKPEPKPVVEEKA 143
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
516-691 5.54e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.10  E-value: 5.54e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  516 ESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEP 595
Cdd:PRK12323   371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAP 450
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  596 EPTTPKEPEPTTP---KEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKV 672
Cdd:PRK12323   451 APAPAAAPAAAARpaaAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPA 530
                          170
                   ....*....|....*....
gi 1907070847  673 TAPAEEIQNKPEETTPASE 691
Cdd:PRK12323   531 TADPDDAFETLAPAPAAAP 549
PRK10819 PRK10819
transport protein TonB; Provisional
403-518 5.64e-04

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 42.75  E-value: 5.64e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  403 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTtPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKE 482
Cdd:PRK10819    42 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPP-KEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKRE 120
                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 1907070847  483 PEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPEST 518
Cdd:PRK10819   121 VKPVEPRPASPFENTAPARPTSSTATAAASKPVTSV 156
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
478-538 5.68e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 43.35  E-value: 5.68e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070847  478 TTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKE 538
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
393-461 5.72e-04

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 41.32  E-value: 5.72e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070847  393 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEP 461
Cdd:pfam05887   43 KGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 111
PRK11633 PRK11633
cell division protein DedD; Provisional
536-641 5.94e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 42.68  E-value: 5.94e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  536 PKEPEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPKEPEPTTPkEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPT 614
Cdd:PRK11633    42 PLVPKPGDRDEPDMMPAaTQALPTQPPEGAAEAVRAGDAAAP-SLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPK 120
                           90       100
                   ....*....|....*....|....*..
gi 1907070847  615 TPKEPEPTTRKEPEPtTPKEPEPTTPK 641
Cdd:PRK11633   121 PQQKVEAPPAPKPEP-KPVVEEKAAPT 146
PRK11633 PRK11633
cell division protein DedD; Provisional
344-448 5.99e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 42.68  E-value: 5.99e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  344 PKEPEPTTPKEPEPT-TLKEPEPTTPKEPEPTTPKEPEPTTPkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPT 422
Cdd:PRK11633    42 PLVPKPGDRDEPDMMpAATQALPTQPPEGAAEAVRAGDAAAP-SLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPK 120
                           90       100
                   ....*....|....*....|....*.
gi 1907070847  423 TPKEPEPttPKEPEPTTPKEPEPTTP 448
Cdd:PRK11633   121 PQQKVEA--PPAPKPEPKPVVEEKAA 144
PRK10263 PRK10263
DNA translocase FtsK; Provisional
335-477 6.00e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 43.92  E-value: 6.00e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  335 TPKEP--EPTTPKEPEPTTPKEPEPTTLKEPEPTTPkepePTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 412
Cdd:PRK10263   739 GPHEPlfTPIVEPVQQPQQPVAPQQQYQQPQQPVAP----QPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQ 814
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907070847  413 PTTPKEPEPTTPkEPEPTTPKEPEPTTPKEP--EPTTPKEPEPTTLKEPEPTTPKEPEPTT-PKEPEP 477
Cdd:PRK10263   815 PQYQQPQQPVAP-QPQYQQPQQPVAPQPQDTllHPLLMRNGDSRPLHKPTTPLPSLDLLTPpPSEVEP 881
PHA03264 PHA03264
envelope glycoprotein D; Provisional
326-431 6.03e-04

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 43.46  E-value: 6.03e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  326 TTPKEPEPTTPKEPEPTtPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 405
Cdd:PHA03264   253 VVPPYFEESKGYEPPPA-PSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPGPPRPAPD 331
                           90       100
                   ....*....|....*....|....*..
gi 1907070847  406 TTPKEPEPTTPKEP-EPTTPKEPEPTT 431
Cdd:PHA03264   332 ADRPEGWPSLEAITfPPPTPATPAVPR 358
dnaA PRK14086
chromosomal replication initiator protein DnaA;
458-646 6.03e-04

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 43.66  E-value: 6.03e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  458 EPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKE-PESTTRKEPEPtTPKEPEPTTP 536
Cdd:PRK14086    89 DPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAyPAYQQRPEPGA-WPRAADDYGW 167
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  537 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTpkKPEPTTPKEPEPTTPkEPEPTTPKEPE---- 612
Cdd:PRK14086   168 QQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHP--RPDWDRPRRDRTDRP-EPPPGAGHVHRggpg 244
                          170       180       190
                   ....*....|....*....|....*....|....*
gi 1907070847  613 -PTTPKEPEPTTRKEPEPTTPKEPEPtTPKEPEPT 646
Cdd:PRK14086   245 pPERDDAPVVPIRPSAPGPLAAQPAP-APGPGEPT 278
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
427-548 6.41e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.55  E-value: 6.41e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  427 PEPTTPKEPEPTTP-KEPEPTTPKEPEPTTlkePEPT-TPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTP 504
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQAAAAPAPAA---APAAaASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPP 452
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1907070847  505 KEPEPTTTKEPestTRKEPEPTTPKEPEPTTPKEPEPTTPKEPE 548
Cdd:PRK14951   453 AQAAPETVAIP---VRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
416-571 6.53e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 43.95  E-value: 6.53e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  416 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPE--PTTPKEPEPTTLKEPEPTTPKEPEP 493
Cdd:PRK14949   637 KKSSADRKPKTPPSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEaaLASGSAPAPPPVPDPYDRPPWEEAP 716
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907070847  494 TTlkEPEPTTPKEPEPTTTKEPESTTRKEPEPTTpkEPEPTtpkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 571
Cdd:PRK14949   717 EV--ASANDGPNNAAEGNLSESVEDASNSELQAV--EQQAT----HQPQVQAEAQSPASTTALTQTSSEVQDTELNLV 786
PRK10819 PRK10819
transport protein TonB; Provisional
419-541 6.64e-04

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 42.75  E-value: 6.64e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  419 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPttlkEPEPTT---PKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTT 495
Cdd:PRK10819    42 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEP----EPEPIPeppKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQP 117
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 1907070847  496 LKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKePEPTTPKEPEP 541
Cdd:PRK10819   118 KREVKPVEPRPASPFENTAPARPTSSTATAAASK-PVTSVSSGPRA 162
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
517-601 6.73e-04

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 43.08  E-value: 6.73e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  517 STTRKEPEPTTPKEPEPTTPKEPEPTT-PKEPEPTtpkePEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKkpEPTTPKE 594
Cdd:PRK13042    22 TTTTQAANATTPSSTKVEAPQSTPPSTkVEAPQSK----PNATTPPSTKVEAPQQtPNATTPSSTKVETPQ--SPTTKQV 95

                   ....*..
gi 1907070847  595 PEPTTPK 601
Cdd:PRK13042    96 PTEINPK 102
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
504-645 6.93e-04

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 43.43  E-value: 6.93e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  504 PKEPEPTT-TKEPESTTRKEPEPTTPKEP-EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKePEPTTPKEPEP 581
Cdd:PRK13108   295 ALEREPAElAAAAVASAASAVGPVGPGEPnQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPA-VEETSEADIER 373
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070847  582 TTPKKPEPTTPKEPEPTTPKEPE-PTTPKEPEPTTPKEPEPTTRKEPEPTT-PKEPEPTTPKEPEP 645
Cdd:PRK13108   374 EQPGDLAGQAPAAHQVDAEAASAaPEEPAALASEAHDETEPEVPEKAAPIPdPAKPDELAVAGPGD 439
PRK10819 PRK10819
transport protein TonB; Provisional
477-613 6.94e-04

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 42.36  E-value: 6.94e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  477 PTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESttrkEPEPTTpkEPEPTTPKePEPTTPKEPEPTTPKEPE 556
Cdd:PRK10819    36 HQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEP----EPEPIP--EPPKEAPV-VIPKPEPKPKPKPKPKPK 108
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070847  557 PTTPKEPEPTtpKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKePEPTTPKEPEP 613
Cdd:PRK10819   109 PVKKVEEQPK--REVKPVEPRPASPFENTAPARPTSSTATAAASK-PVTSVSSGPRA 162
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
457-525 7.13e-04

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 40.93  E-value: 7.13e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070847  457 KEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEP 525
Cdd:pfam05887   41 KGKGKGTKVSDDDTNGTDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 109
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
366-449 7.41e-04

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 42.70  E-value: 7.41e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  366 TTPKEPEPTTPKEPEPTTPKEPEPTT-PKEPEPTtpkePEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKepEPTTPKEP 443
Cdd:PRK13042    23 TTTQAANATTPSSTKVEAPQSTPPSTkVEAPQSK----PNATTPPSTKVEAPQQtPNATTPSSTKVETPQ--SPTTKQVP 96

                   ....*.
gi 1907070847  444 EPTTPK 449
Cdd:PRK13042    97 TEINPK 102
PHA03264 PHA03264
envelope glycoprotein D; Provisional
526-635 7.42e-04

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 43.07  E-value: 7.42e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  526 TTPKEPEPTTPKEPEPTtPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEP 605
Cdd:PHA03264   253 VVPPYFEESKGYEPPPA-PSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPGPPRPAPD 331
                           90       100       110
                   ....*....|....*....|....*....|
gi 1907070847  606 TTPKEPEPTTPKEPEPTtrkePEPTTPKEP 635
Cdd:PHA03264   332 ADRPEGWPSLEAITFPP----PTPATPAVP 357
PHA03169 PHA03169
hypothetical protein; Provisional
337-545 7.50e-04

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 43.04  E-value: 7.50e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  337 KEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPttpKEPEPTTP 416
Cdd:PHA03169    44 AKPAPPAPTTSGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAE---ELASGLSP 120
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  417 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTL 496
Cdd:PHA03169   121 ENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTS 200
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*....
gi 1907070847  497 KEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPK 545
Cdd:PHA03169   201 SPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFPG 249
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
526-609 7.55e-04

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 42.70  E-value: 7.55e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  526 TTPKEPEPTTPKEPEPTTPKEPEPTT-PKEPEPTtpkePEPTTPKEPEPTTPKE-PEPTTPKKPEPTTPKepEPTTPKEP 603
Cdd:PRK13042    23 TTTQAANATTPSSTKVEAPQSTPPSTkVEAPQSK----PNATTPPSTKVEAPQQtPNATTPSSTKVETPQ--SPTTKQVP 96

                   ....*.
gi 1907070847  604 EPTTPK 609
Cdd:PRK13042    97 TEINPK 102
PTZ00108 PTZ00108
DNA topoisomerase 2-like protein; Provisional
434-650 7.61e-04

DNA topoisomerase 2-like protein; Provisional


Pssm-ID: 240271 [Multi-domain]  Cd Length: 1388  Bit Score: 43.88  E-value: 7.61e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  434 EPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPePTTPKEPEPTTLKEPEPTTPKEPEPTTTK 513
Cdd:PTZ00108  1149 EKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNS-KRVDSDEKRKLDDKPDNKKSNSSGSDQED 1227
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  514 EPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTpkepepTTPKKPEPTTPK 593
Cdd:PTZ00108  1228 DEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPS------KRPDGESNGGSK 1301
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1907070847  594 EPEPTTPKEPEPTTPKEPEPTTPKEPEPTT-RKEPEPTTPKEPEPTTPKEPEPTTPKK 650
Cdd:PTZ00108  1302 PSSPTKKKVKKRLEGSLAALKKKKKSEKKTaRKKKSKTRVKQASASQSSRLLRRPRKK 1359
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
358-441 7.68e-04

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 42.70  E-value: 7.68e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  358 TTLKEPEPTTPKEPEPTTPKEPEPTT-PKEPEPTtpkePEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKepEPTTPKEP 435
Cdd:PRK13042    23 TTTQAANATTPSSTKVEAPQSTPPSTkVEAPQSK----PNATTPPSTKVEAPQQtPNATTPSSTKVETPQ--SPTTKQVP 96

                   ....*.
gi 1907070847  436 EPTTPK 441
Cdd:PRK13042    97 TEINPK 102
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
510-593 7.75e-04

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 42.70  E-value: 7.75e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  510 TTTKEPESTTRKEPEPTTPKEPEPTT-PKEPEPTtpkePEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKepEPTTPKKP 587
Cdd:PRK13042    23 TTTQAANATTPSSTKVEAPQSTPPSTkVEAPQSK----PNATTPPSTKVEAPQQtPNATTPSSTKVETPQ--SPTTKQVP 96

                   ....*.
gi 1907070847  588 EPTTPK 593
Cdd:PRK13042    97 TEINPK 102
PRK12757 PRK12757
cell division protein FtsN; Provisional
492-572 7.86e-04

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 42.34  E-value: 7.86e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  492 EPTTLKE-PE-PTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 569
Cdd:PRK12757    98 QPTQLSEvPYnEQTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEA 177

                   ...
gi 1907070847  570 EPE 572
Cdd:PRK12757   178 EKE 180
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
510-570 7.89e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 42.96  E-value: 7.89e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070847  510 TTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 570
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
411-531 7.93e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.55  E-value: 7.93e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  411 PEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPkePEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPK 489
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPA 453
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1907070847  490 EPEPTTLKEPEPTTPkEPePTTTKEPESTTRKEPEPTTPKEP 531
Cdd:PRK14951   454 QAAPETVAIPVRVAP-EP-AVASAAPAPAAAPAAARLTPTEE 493
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
325-452 8.02e-04

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 43.04  E-value: 8.02e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  325 PTTPKEPEPTTpkEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTP----KEPEPTTPKEPE-PTTPKEPEPTT 399
Cdd:PRK13108   320 PGEPNQPDDVA--EAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEAdierEQPGDLAGQAPAaHQVDAEAASAA 397
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1907070847  400 PKEPEPTTPKEPEPTTPKEPEPTTPKepepTTPKEPEPTTPKEPEPtTPKEPE 452
Cdd:PRK13108   398 PEEPAALASEAHDETEPEVPEKAAPI----PDPAKPDELAVAGPGD-DPAEPD 445
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
451-568 8.14e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.55  E-value: 8.14e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  451 PEPTTLKEPEPTTP-KEPEPTTPKEPEPTTlkePEPT-TPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTP 528
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQAAAAPAPAA---APAAaASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPP 452
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1907070847  529 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 568
Cdd:PRK14951   453 AQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
485-697 8.30e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 43.62  E-value: 8.30e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  485 PTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 564
Cdd:PHA03307    25 PATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREG 104
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  565 pttpkEPEPTTPkEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPE 644
Cdd:PHA03307   105 -----SPTPPGP-SSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSS 178
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1907070847  645 PTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQNKPEETTPASEDSDDSK 697
Cdd:PHA03307   179 PEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADD 231
PRK10819 PRK10819
transport protein TonB; Provisional
368-488 8.31e-04

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 42.36  E-value: 8.31e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  368 PKEPEPTTPKEPEPTTPKEPEpttpKEPEPttpkEPEPTTPKE-PEPTTPKEPEPTTPKEPEPTTPKEPEP---TTPKEP 443
Cdd:PRK10819    55 PADLEPPQAVQPPPEPVVEPE----PEPEP----IPEPPKEAPvVIPKPEPKPKPKPKPKPKPVKKVEEQPkreVKPVEP 126
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1907070847  444 EPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTP 488
Cdd:PRK10819   127 RPASPFENTAPARPTSSTATAAASKPVTSVSSGPRALSRNQPQYP 171
PRK14960 PRK14960
DNA polymerase III subunit gamma/tau;
421-603 8.63e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237868 [Multi-domain]  Cd Length: 702  Bit Score: 43.50  E-value: 8.63e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  421 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPttlkEPEPTTPKEPEPTTLKEPE 500
Cdd:PRK14960   360 PLAPNEILVSEPVQQNGQAEVGLNSQAQTAQEITPVSAVQPVEVISQPAMVEPEPEP----EPEPEPEPEPEPEPEPEPE 435
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  501 PTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPKEP 579
Cdd:PRK14960   436 PEPEPEPQPNQDLMVFDPNHHELIGLESAVVQETVSVLEEDFIPVPEQKLVQVQAETQVKQiEPEPASTAEPIGLFEASS 515
                          170       180
                   ....*....|....*....|....
gi 1907070847  580 EPTTPKKPEPTTPKEPEPTTPKEP 603
Cdd:PRK14960   516 AEFSLAQDTSAYDLVSEPVIEQQS 539
PRK14960 PRK14960
DNA polymerase III subunit gamma/tau;
352-475 8.70e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237868 [Multi-domain]  Cd Length: 702  Bit Score: 43.50  E-value: 8.70e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  352 PKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPT------TPKEPEPTTPKEP--EPTTPKEPEPTTPKEPEPTT 423
Cdd:PRK14960   407 PAMVEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPQPNqdlmvfDPNHHELIGLESAvvQETVSVLEEDFIPVPEQKLV 486
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1907070847  424 PKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEP 475
Cdd:PRK14960   487 QVQAETQVKQiEPEPASTAEPIGLFEASSAEFSLAQDTSAYDLVSEPVIEQQS 539
PRK11633 PRK11633
cell division protein DedD; Provisional
408-511 8.86e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 41.91  E-value: 8.86e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  408 PKEPEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPKEPEPTTPkEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPT 486
Cdd:PRK11633    42 PLVPKPGDRDEPDMMPAaTQALPTQPPEGAAEAVRAGDAAAP-SLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPK 120
                           90       100
                   ....*....|....*....|....*
gi 1907070847  487 TPKEPEPTtlKEPEPTTPKEPEPTT 511
Cdd:PRK11633   121 PQQKVEAP--PAPKPEPKPVVEEKA 143
PTZ00108 PTZ00108
DNA topoisomerase 2-like protein; Provisional
378-605 8.93e-04

DNA topoisomerase 2-like protein; Provisional


Pssm-ID: 240271 [Multi-domain]  Cd Length: 1388  Bit Score: 43.50  E-value: 8.93e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  378 EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTpKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLK 457
Cdd:PTZ00108  1149 EKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASV-VGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQED 1227
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  458 EPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPE--STTRKEPEPTTPKEPEPTT 535
Cdd:PTZ00108  1228 DEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPppSKRPDGESNGGSKPSSPTK 1307
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070847  536 PKEPEPTTPKEPEPTTPKEPEPTT-PKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEP 605
Cdd:PTZ00108  1308 KKVKKRLEGSLAALKKKKKSEKKTaRKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSED 1378
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
443-516 9.29e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 43.34  E-value: 9.29e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907070847  443 PEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPE 516
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAA 111
PRK10905 PRK10905
cell division protein DamX; Validated
534-649 9.47e-04

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 42.62  E-value: 9.47e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  534 TTPKEPEPTTPKEPEPTTPKEPEPTTP------KEPEPTTPKEPEPTTPKEPEPTT---PKKPEPTTPKEPEPT--TPKE 602
Cdd:PRK10905   106 TQPQNQQQLNNVAVNSTLPTEPATVAPvrngnaSRQTAKTQTAERPATTRPARKQAviePKKPQATAKTEPKPVaqTPKR 185
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1907070847  603 PEPTTPKEPepttPKEPEPTTRKEPEPTTPKEPEPT-TPKEPEPTTPK 649
Cdd:PRK10905   186 TEPAAPVAS----TKAPAATSTPAPKETATTAPVQTaSPAQTTATPAA 229
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
558-630 9.47e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 42.75  E-value: 9.47e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907070847  558 TTPKEPEPTTPKEPEPTTPK-EPEPTTPKKPEPTTPKEPEPTTPKEPEPTtpkEPEPTTPKEPEPTTRKEPEPT 630
Cdd:PTZ00144   120 TGGAPPAAAPAAAAAAKAEKtTPEKPKAAAPTPEPPAASKPTPPAAAKPP---EPAPAAKPPPTPVARADPRET 190
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
319-386 9.47e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 42.96  E-value: 9.47e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907070847  319 TRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKE 386
Cdd:TIGR00601   75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
451-530 1.05e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 43.34  E-value: 1.05e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  451 PEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKE 530
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
419-540 1.05e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.16  E-value: 1.05e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  419 PEPTTPKEPEPTTP-KEPEPTTPKepePTTPKEPEPTTLKEP-EPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTtl 496
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQAAA---APAPAAAPAAAASAPaAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPA-- 450
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1907070847  497 kEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPE 540
Cdd:PRK14951   451 -PPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
ZipA COG3115
Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome ...
374-497 1.09e-03

Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225657 [Multi-domain]  Cd Length: 324  Bit Score: 42.55  E-value: 1.09e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  374 TTPKEPEPTTPKEPEPTTPKEPE--PTTPKEPEPTTPKEPEPTTPKEPEPttPKEPEPTTPKEPEPttPKEPEPTTPkEP 451
Cdd:COG3115     68 RKNEAPQFTQEHEAARQSPQHQYqpEYASAQIKIPVPQPPQISDPPAHPQ--PTQPALDQEQPPEE--ARQPVLPQE-AP 142
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 1907070847  452 EPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLK 497
Cdd:COG3115    143 APQPVHSAAPQPAVQTVQPAVPEQQVQPEEVVEPAPEVKRPPRKDT 188
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
319-432 1.10e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.78  E-value: 1.10e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  319 TRKEPEPTTP---KEPEPTTPKEPEPTTPKEPEPTTPkepePTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 395
Cdd:PRK14951   380 TPARPEAAAPaaaPVAQAAAAPAPAAAPAAAASAPAA----PPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQA 455
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070847  396 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 432
Cdd:PRK14951   456 APETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
511-578 1.14e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 42.57  E-value: 1.14e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907070847  511 TTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 578
Cdd:TIGR00601   75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
583-648 1.17e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 42.57  E-value: 1.17e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070847  583 TPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTP 648
Cdd:TIGR00601   75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVP 140
PTZ00108 PTZ00108
DNA topoisomerase 2-like protein; Provisional
458-697 1.19e-03

DNA topoisomerase 2-like protein; Provisional


Pssm-ID: 240271 [Multi-domain]  Cd Length: 1388  Bit Score: 43.11  E-value: 1.19e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  458 EPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPK 537
Cdd:PTZ00108  1149 EKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDD 1228
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  538 EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEpepTTPKEPEPTTPKKPEPTTPKEPEPTTPKepepTTPKEPEPTTPK 617
Cdd:PTZ00108  1229 EEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFS---SDDLSKEGKPKNAPKRVSAVQYSPPPPS----KRPDGESNGGSK 1301
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  618 EPEPTTRKEPEPTTPKEPEPTTPKEPEPTTP--KKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQN-KPEET--TPASED 692
Cdd:PTZ00108  1302 PSSPTKKKVKKRLEGSLAALKKKKKSEKKTArkKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDdDDSEVddSEDEDD 1381

                   ....*
gi 1907070847  693 SDDSK 697
Cdd:PTZ00108  1382 EDDED 1386
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
519-584 1.23e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 42.57  E-value: 1.23e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070847  519 TRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 584
Cdd:TIGR00601   75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVP 140
ZipA COG3115
Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome ...
351-503 1.24e-03

Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225657 [Multi-domain]  Cd Length: 324  Bit Score: 42.16  E-value: 1.24e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  351 TPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKePEPTTPKEPEPTTPKEPE--PTTPKEPEPTTPKEPEPTTPKEPE 428
Cdd:COG3115     38 RPLKRMKSKRDDDPYDEVADDEGVGEVRVVRKNEA-PQFTQEHEAARQSPQHQYqpEYASAQIKIPVPQPPQISDPPAHP 116
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907070847  429 PttPKEPEPTTPKEPEPttPKEPePTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTT 503
Cdd:COG3115    117 Q--PTQPALDQEQPPEE--ARQP-VLPQEAPAPQPVHSAAPQPAVQTVQPAVPEQQVQPEEVVEPAPEVKRPPRK 186
PHA03369 PHA03369
capsid maturational protease; Provisional
455-570 1.25e-03

capsid maturational protease; Provisional


Pssm-ID: 223061 [Multi-domain]  Cd Length: 663  Bit Score: 42.68  E-value: 1.25e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  455 TLKEPEPTTPKEPEPTTPKEPEPTTlkepePTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEP-EP 533
Cdd:PHA03369   350 TASLTAPSRVLAAAAKVAVIAAPQT-----HTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDPGLVSPYNPqSP 424
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1907070847  534 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 570
Cdd:PHA03369   425 GTSYGPEPVGPVPPQPTNPYVMPISMANMVYPGHPQE 461
PRK14960 PRK14960
DNA polymerase III subunit gamma/tau;
488-627 1.27e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237868 [Multi-domain]  Cd Length: 702  Bit Score: 42.73  E-value: 1.27e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  488 PKEPEPTTLKEP-EPTTPKEP--EPTTTKEPESTTRKEPEPTT----PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 560
Cdd:PRK14960   360 PLAPNEILVSEPvQQNGQAEVglNSQAQTAQEITPVSAVQPVEvisqPAMVEPEPEPEPEPEPEPEPEPEPEPEPEPEPE 439
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907070847  561 KEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK-EPEPTTRKEP 627
Cdd:PRK14960   440 PEPQPNQDLMVFDPNHHELIGLESAVVQETVSVLEEDFIPVPEQKLVQVQAETQVKQiEPEPASTAEP 507
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
555-627 1.42e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 42.36  E-value: 1.42e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907070847  555 PEPTTPKEPEPTTPKePEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEP 627
Cdd:PTZ00144   122 GAPPAAAPAAAAAAK-AEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRETRVP 193
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
475-558 1.72e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 42.57  E-value: 1.72e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  475 PEPTTLKEPEPTTPKEPEPTTlkEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPtTPKE 554
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAP--AAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAA-AAVE 114

                   ....
gi 1907070847  555 PEPT 558
Cdd:PRK12270   115 DEVT 118
ZipA COG3115
Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome ...
334-457 1.88e-03

Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225657 [Multi-domain]  Cd Length: 324  Bit Score: 41.78  E-value: 1.88e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  334 TTPKEPEPTTPKEPEPTTPKEPE--PTTLKEPEPTTPKEPEPTTPKEPEPttPKEPEPTTPKEPEPttPKEPEPTTPkEP 411
Cdd:COG3115     68 RKNEAPQFTQEHEAARQSPQHQYqpEYASAQIKIPVPQPPQISDPPAHPQ--PTQPALDQEQPPEE--ARQPVLPQE-AP 142
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 1907070847  412 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLK 457
Cdd:COG3115    143 APQPVHSAAPQPAVQTVQPAVPEQQVQPEEVVEPAPEVKRPPRKDT 188
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
502-562 1.94e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 41.80  E-value: 1.94e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070847  502 TTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 562
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
358-418 2.00e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 41.80  E-value: 2.00e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070847  358 TTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 418
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
534-594 2.07e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 41.80  E-value: 2.07e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070847  534 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKE 594
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
390-450 2.08e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 41.80  E-value: 2.08e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070847  390 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 450
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
382-442 2.08e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 41.80  E-value: 2.08e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070847  382 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 442
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
374-434 2.08e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 41.80  E-value: 2.08e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070847  374 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 434
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
366-426 2.08e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 41.80  E-value: 2.08e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070847  366 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 426
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
514-617 2.19e-03

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 41.65  E-value: 2.19e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  514 EPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEpEPTTPKEPEPTTPKEPEPTTpkEPEPTTPKePEPTTPkkPEPTTPK 593
Cdd:PRK13335    69 RQERTPKLEKAPNTNEEKTSASKIEKISQPKQE-EQKSLNISATPAPKQEQSQT--TTESTTPK-TKVTTP--PSTNTPQ 142
                           90       100
                   ....*....|....*....|....*
gi 1907070847  594 EPEPTTPKEPE-PTTPKEPEPTTPK 617
Cdd:PRK13335   143 PMQSTKSDTPQsPTIKQAQTDMTPK 167
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
322-420 2.21e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.01  E-value: 2.21e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  322 EPEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTP 400
Cdd:PRK14951   394 VAQAAAAPAPAAAPAAAaSAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVA 473
                           90       100
                   ....*....|....*....|
gi 1907070847  401 KEPEPTTPKEPEPTTPKEPE 420
Cdd:PRK14951   474 SAAPAPAAAPAAARLTPTEE 493
PRK10905 PRK10905
cell division protein DamX; Validated
366-473 2.43e-03

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 41.46  E-value: 2.43e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  366 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT-PKEPEPTTPKEPEPT--TPKEPEPTTPKEPepttPKE 442
Cdd:PRK10905   122 TLPTEPATVAPVRNGNASRQTAKTQTAERPATTRPARKQAVIePKKPQATAKTEPKPVaqTPKRTEPAAPVAS----TKA 197
                           90       100       110
                   ....*....|....*....|....*....|..
gi 1907070847  443 PEPTTPKEPEPTTLKEPEPT-TPKEPEPTTPK 473
Cdd:PRK10905   198 PAATSTPAPKETATTAPVQTaSPAQTTATPAA 229
ZipA COG3115
Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome ...
518-647 2.62e-03

Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225657 [Multi-domain]  Cd Length: 324  Bit Score: 41.39  E-value: 2.62e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  518 TTRKEPEPTTPKEPEPTTPKEPE--PTTPKEPEPTTPKEPEPTTPKEPEPttPKEPEPTTPKEPEPttPKKPepttpkeP 595
Cdd:COG3115     68 RKNEAPQFTQEHEAARQSPQHQYqpEYASAQIKIPVPQPPQISDPPAHPQ--PTQPALDQEQPPEE--ARQP-------V 136
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1907070847  596 EPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTT 647
Cdd:COG3115    137 LPQEAPAPQPVHSAAPQPAVQTVQPAVPEQQVQPEEVVEPAPEVKRPPRKDT 188
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
342-402 2.73e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 41.42  E-value: 2.73e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070847  342 TTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 402
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
350-410 2.77e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 41.42  E-value: 2.77e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070847  350 TTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 410
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
TonB COG0810
Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope ...
463-610 2.92e-03

Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 223880 [Multi-domain]  Cd Length: 244  Bit Score: 40.54  E-value: 2.92e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  463 TPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPK-EPEP 541
Cdd:COG0810     24 VFLHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKpKPKP 103
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907070847  542 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKE 610
Cdd:COG0810    104 KPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLSGLRRAIRRAPRYPAQ 172
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
531-603 2.93e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 41.21  E-value: 2.93e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907070847  531 PEPTTPKEPEPTTPKePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEP 603
Cdd:PTZ00144   122 GAPPAAAPAAAAAAK-AEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRETRVP 193
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
334-394 2.97e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 41.03  E-value: 2.97e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070847  334 TTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 394
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
382-450 3.04e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 41.21  E-value: 3.04e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  382 TTPKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 450
Cdd:PTZ00144   120 TGGAPPAAAPAAAAAAKAEKtTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
366-434 3.04e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 41.21  E-value: 3.04e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  366 TTPKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 434
Cdd:PTZ00144   120 TGGAPPAAAPAAAAAAKAEKtTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
374-442 3.04e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 41.21  E-value: 3.04e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  374 TTPKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 442
Cdd:PTZ00144   120 TGGAPPAAAPAAAAAAKAEKtTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
PRK12757 PRK12757
cell division protein FtsN; Provisional
356-436 3.09e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 40.80  E-value: 3.09e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  356 EPTTLKE-PE-PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 433
Cdd:PRK12757    98 QPTQLSEvPYnEQTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEA 177

                   ...
gi 1907070847  434 EPE 436
Cdd:PRK12757   178 EKE 180
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
447-545 3.10e-03

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 41.27  E-value: 3.10e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  447 TPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTlkEPEPTTPKepePTTTKEPESTTRKEPEPT 526
Cdd:PRK13335    73 TPKLEKAPNTNEEKTSASKIEKISQPKQEEQKSLNISATPAPKQEQSQT--TTESTTPK---TKVTTPPSTNTPQPMQST 147
                           90       100
                   ....*....|....*....|
gi 1907070847  527 TPKEPE-PTTPKEPEPTTPK 545
Cdd:PRK13335   148 KSDTPQsPTIKQAQTDMTPK 167
PRK12757 PRK12757
cell division protein FtsN; Provisional
567-636 3.12e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 40.80  E-value: 3.12e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  567 TPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPE 636
Cdd:PRK12757   111 TPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKE 180
PRK10905 PRK10905
cell division protein DamX; Validated
366-488 3.30e-03

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 41.08  E-value: 3.30e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  366 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT-PKEPEPTTPKEPEPT--TPKE 442
Cdd:PRK10905   106 TQPQNQQQLNNVAVNSTLPTEPATVAPVRNGNASRQTAKTQTAERPATTRPARKQAVIePKKPQATAKTEPKPVaqTPKR 185
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 1907070847  443 PEPTTPKEPEPTtlkePEPTTPKEPEPTTPKEPEPTTLKEPEPTTP 488
Cdd:PRK10905   186 TEPAAPVASTKA----PAATSTPAPKETATTAPVQTASPAQTTATP 227
rne PRK10811
ribonuclease E; Reviewed
525-690 3.31e-03

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 41.56  E-value: 3.31e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  525 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTpkEPEPTTPKEPEPTTPkkPEPTTPKEPEPTTPKEPE 604
Cdd:PRK10811   846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVAE--PQPEEVVVVETTHPEVIA 921
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  605 PTTPKEPEPTTPKE---PEPTTRkEPEPTTPKEPEPTTPKEPEPTT---PKKPEPTTTSPKTTTLKATTLAPKVTAPAEE 678
Cdd:PRK10811   922 APVTEQPQVITESDvavAQEVAE-HAEPVVEPQDETADIEEAAETAevvVAEPEVVAQPAAPVVAEVAAEVETVTAVEPE 1000
                          170
                   ....*....|..
gi 1907070847  679 IQNKPEETTPAS 690
Cdd:PRK10811  1001 VAPAQVPEATVE 1012
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
375-452 3.31e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 227665 [Multi-domain]  Cd Length: 931  Bit Score: 41.35  E-value: 3.31e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  375 TPKEPEPTTPKEPEPTT--PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 452
Cdd:COG5373     45 GPVAKAAEQMAAPEAAEaaPLPAAAESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFAA 124
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
367-444 3.31e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 227665 [Multi-domain]  Cd Length: 931  Bit Score: 41.35  E-value: 3.31e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  367 TPKEPEPTTPKEPEPTT--PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 444
Cdd:COG5373     45 GPVAKAAEQMAAPEAAEaaPLPAAAESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFAA 124
ZipA COG3115
Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome ...
390-519 3.37e-03

Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225657 [Multi-domain]  Cd Length: 324  Bit Score: 41.01  E-value: 3.37e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  390 TTPKEPEPTTPKEPEPTTPKEPE--PTTPKEPEPTTPKEPEPTTPKEPEPttPKEPEPTTPKEPEPttLKEPepttpkeP 467
Cdd:COG3115     68 RKNEAPQFTQEHEAARQSPQHQYqpEYASAQIKIPVPQPPQISDPPAHPQ--PTQPALDQEQPPEE--ARQP-------V 136
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1907070847  468 EPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTT 519
Cdd:COG3115    137 LPQEAPAPQPVHSAAPQPAVQTVQPAVPEQQVQPEEVVEPAPEVKRPPRKDT 188
ZipA COG3115
Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome ...
318-439 3.43e-03

Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225657 [Multi-domain]  Cd Length: 324  Bit Score: 41.01  E-value: 3.43e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  318 TTRKEPEPTTPKEPEPTTPKEPE--PTTPKEPEPTTPKEPEPTTLKEPEPttPKEPEPTTPKEPEPTTpKEPEPTTPKEP 395
Cdd:COG3115     68 RKNEAPQFTQEHEAARQSPQHQYqpEYASAQIKIPVPQPPQISDPPAHPQ--PTQPALDQEQPPEEAR-QPVLPQEAPAP 144
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1907070847  396 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT 439
Cdd:COG3115    145 QPVHSAAPQPAVQTVQPAVPEQQVQPEEVVEPAPEVKRPPRKDT 188
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
395-467 3.46e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 41.21  E-value: 3.46e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907070847  395 PEPTTPKEPEPTTPKePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEP 467
Cdd:PTZ00144   122 GAPPAAAPAAAAAAK-AEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRETRVP 193
PRK11633 PRK11633
cell division protein DedD; Provisional
328-440 3.49e-03

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 40.37  E-value: 3.49e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  328 PKEPEPTTPKEPEPTTPKEPepTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTPKEPepttpkEPEPTTPKEPEPTT 407
Cdd:PRK11633    42 PLVPKPGDRDEPDMMPAATQ--ALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEP------EPAPVEPPKPKPVE 113
                           90       100       110
                   ....*....|....*....|....*....|...
gi 1907070847  408 PKEPEPTTPKEPEPttPKEPEPTTPKEPEPTTP 440
Cdd:PRK11633   114 KPKPKPKPQQKVEA--PPAPKPEPKPVVEEKAA 144
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
534-617 3.50e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 40.77  E-value: 3.50e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  534 TTPKEPEPTTPKEPEPTTPKEPEPTTpkepEPTTPKE-PEPTTPKEPEPTTPK-KPEPTTPKEPEPTTPKepEPTTPKEP 611
Cdd:PRK13042    23 TTTQAANATTPSSTKVEAPQSTPPST----KVEAPQSkPNATTPPSTKVEAPQqTPNATTPSSTKVETPQ--SPTTKQVP 96

                   ....*.
gi 1907070847  612 EPTTPK 617
Cdd:PRK13042    97 TEINPK 102
TonB COG0810
Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope ...
439-594 3.52e-03

Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 223880 [Multi-domain]  Cd Length: 244  Bit Score: 40.54  E-value: 3.52e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  439 TPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKepest 518
Cdd:COG0810     24 VFLHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPK----- 98
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070847  519 trKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKE 594
Cdd:COG0810     99 --PKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLSGLRRAIRRAPRYPAQ 172
PRK10905 PRK10905
cell division protein DamX; Validated
390-518 3.54e-03

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 40.69  E-value: 3.54e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  390 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT-PKEPEPTTLKEPEPT--TPKE 466
Cdd:PRK10905   106 TQPQNQQQLNNVAVNSTLPTEPATVAPVRNGNASRQTAKTQTAERPATTRPARKQAVIePKKPQATAKTEPKPVaqTPKR 185
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1907070847  467 PEPTTPKEPEPTtlkePEPTTPKEPEPTTLKEPEPT-TPKEPEPTTTKEPEST 518
Cdd:PRK10905   186 TEPAAPVASTKA----PAATSTPAPKETATTAPVQTaSPAQTTATPAAGGKTA 234
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
515-598 3.58e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 41.21  E-value: 3.58e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  515 PESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPepttPKEPEPTTPKEPEPTTPKEPEPTtpkEPEPTTPKKPEPTTPKE 594
Cdd:PTZ00144   114 PLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPK----AAAPTPEPPAASKPTPPAAAKPP---EPAPAAKPPPTPVARAD 186

                   ....
gi 1907070847  595 PEPT 598
Cdd:PTZ00144   187 PRET 190
PRK10819 PRK10819
transport protein TonB; Provisional
371-495 3.59e-03

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 40.44  E-value: 3.59e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  371 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEpttpKEPEPttpkEPEPTTPKE-PEPTTPKEPEPTTPKEPEPTTPK 449
Cdd:PRK10819    42 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPE----PEPEP----IPEPPKEAPvVIPKPEPKPKPKPKPKPKPVKKV 113
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 1907070847  450 EPEPTtlKEPEPTTPKEPEPTTPKEPEPTTlkePEPTTPKEPEPTT 495
Cdd:PRK10819   114 EEQPK--REVKPVEPRPASPFENTAPARPT---SSTATAAASKPVT 154
PHA03264 PHA03264
envelope glycoprotein D; Provisional
398-507 3.79e-03

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 41.14  E-value: 3.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  398 TTPKEPEPTTPKEPEPTtPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEP 477
Cdd:PHA03264   253 VVPPYFEESKGYEPPPA-PSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPGPPRPAPD 331
                           90       100       110
                   ....*....|....*....|....*....|
gi 1907070847  478 TTLKEPEPTTPKEPEPTtlkePEPTTPKEP 507
Cdd:PHA03264   332 ADRPEGWPSLEAITFPP----PTPATPAVP 357
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
344-410 3.83e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.82  E-value: 3.83e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070847  344 PKEPEPTTPKEPEPTTlKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 410
Cdd:PTZ00144   124 PPAAAPAAAAAAKAEK-TTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
PRK10905 PRK10905
cell division protein DamX; Validated
398-537 3.83e-03

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 40.69  E-value: 3.83e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  398 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPepTTPKEPEPTTPKEPEPTTLKEPepttpKEPEPTTPKEPEP 477
Cdd:PRK10905   106 TQPQNQQQLNNVAVNSTLPTEPATVAPVRNGNASRQTA--KTQTAERPATTRPARKQAVIEP-----KKPQATAKTEPKP 178
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070847  478 TtlkepePTTPKEPEPTTlkepEPTTPKEPEPTTTKEPESTTRKEPEPT-TPKEPEPTTPK 537
Cdd:PRK10905   179 V------AQTPKRTEPAA----PVASTKAPAATSTPAPKETATTAPVQTaSPAQTTATPAA 229
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
494-554 3.89e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 40.65  E-value: 3.89e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070847  494 TTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 554
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
383-466 3.89e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 227665 [Multi-domain]  Cd Length: 931  Bit Score: 41.35  E-value: 3.89e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  383 TPKEPEPTTPKEPEPTT--PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPeptTLKEPE 460
Cdd:COG5373     45 GPVAKAAEQMAAPEAAEaaPLPAAAESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAAPAPAEPVEP---SLAANP 121

                   ....*.
gi 1907070847  461 PTTPKE 466
Cdd:COG5373    122 FAAAIE 127
PRK10819 PRK10819
transport protein TonB; Provisional
563-671 3.93e-03

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 40.05  E-value: 3.93e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  563 PEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKE-PEPTTPKEPEPTTRKEPEPTTPKEPEPTTPK 641
Cdd:PRK10819    42 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPvVIPKPEPKPKPKPKPKPKPVKKVEEQPKREV 121
                           90       100       110
                   ....*....|....*....|....*....|
gi 1907070847  642 EPEPTTPKKPEPTTTSPKTTTLKATTLAPK 671
Cdd:PRK10819   122 KPVEPRPASPFENTAPARPTSSTATAAASK 151
PHA03264 PHA03264
envelope glycoprotein D; Provisional
350-455 4.06e-03

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 40.76  E-value: 4.06e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  350 TTPKEPEPTTLKEPEPTtPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP 429
Cdd:PHA03264   253 VVPPYFEESKGYEPPPA-PSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPGPPRPAPD 331
                           90       100
                   ....*....|....*....|....*..
gi 1907070847  430 TTPKEPEPTTPKEP-EPTTPKEPEPTT 455
Cdd:PHA03264   332 ADRPEGWPSLEAITfPPPTPATPAVPR 358
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
534-606 4.07e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.82  E-value: 4.07e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907070847  534 TTPKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKkpePTTPKEPEPTTPKEPEPT 606
Cdd:PTZ00144   120 TGGAPPAAAPAAAAAAKAEKtTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPA---PAAKPPPTPVARADPRET 190
PRK10905 PRK10905
cell division protein DamX; Validated
326-441 4.07e-03

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 40.69  E-value: 4.07e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  326 TTPKEPEPTTP------KEPEPTTPKEPEPTTPKEPEPTTLKEPepttpKEPEPTTPKEPEPTtpkepePTTPKEPEPTT 399
Cdd:PRK10905   122 TLPTEPATVAPvrngnaSRQTAKTQTAERPATTRPARKQAVIEP-----KKPQATAKTEPKPV------AQTPKRTEPAA 190
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1907070847  400 PKEPepttPKEPEPTTPKEPEPTTPKEPEPT-TPKEPEPTTPK 441
Cdd:PRK10905   191 PVAS----TKAPAATSTPAPKETATTAPVQTaSPAQTTATPAA 229
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
516-693 4.11e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 41.25  E-value: 4.11e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  516 ESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTT--PK 593
Cdd:PRK14949   633 EGDGKKSSADRKPKTPPSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVPDPYDrpPW 712
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  594 EPEPTTpkEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPkkpeptttspktttlkatTLAPKVT 673
Cdd:PRK14949   713 EEAPEV--ASANDGPNNAAEGNLSESVEDASNSELQAVEQQATHQPQVQAEAQSP------------------ASTTALT 772
                          170       180
                   ....*....|....*....|
gi 1907070847  674 APAEEIQNKPEETTPASEDS 693
Cdd:PRK14949   773 QTSSEVQDTELNLVLLSSGS 792
PRK01297 PRK01297
ATP-dependent RNA helicase RhlB; Provisional
525-588 4.18e-03

ATP-dependent RNA helicase RhlB; Provisional


Pssm-ID: 234938 [Multi-domain]  Cd Length: 475  Bit Score: 41.05  E-value: 4.18e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907070847  525 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPE 588
Cdd:PRK01297    13 EAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASLWKLE 76
PRK01297 PRK01297
ATP-dependent RNA helicase RhlB; Provisional
549-624 4.18e-03

ATP-dependent RNA helicase RhlB; Provisional


Pssm-ID: 234938 [Multi-domain]  Cd Length: 475  Bit Score: 41.05  E-value: 4.18e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070847  549 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTR 624
Cdd:PRK01297    13 EAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASLWKLEDFVVEPQEGKTR 88
PHA03247 PHA03247
large tegument protein UL36; Provisional
507-696 4.21e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 4.21e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  507 PEPTTTKEPESTtrKEPEPTTPKEPEPTTPKEPEPTTPKEPEP---------TTPKEPEPTTPKEPEPTTPKEPEPTTPK 577
Cdd:PHA03247   255 PAPPPVVGEGAD--RAPETARGATGPPPPPEAAAPNGAAAPPDgvwgaalagAPLALPAPPDPPPPAPAGDAEEEDDEDG 332
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  578 EPEPTTP---------------KKPEPTTPKEPEPTTPKEPEP---TTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTT 639
Cdd:PHA03247   333 AMEVVSPlprprqhyplgfpkrRRPTWTPPSSLEDLSAGRHHPkraSLPTRKRRSARHAATPFARGPGGDDQTRPAAPVP 412
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070847  640 PKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQNKPEETTPASEDSDDS 696
Cdd:PHA03247   413 ASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDA 469
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
542-614 4.21e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.82  E-value: 4.21e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907070847  542 TTPKEPEPTTPKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPTTPKKPEPTtpkEPEPTTPKEPEPTTPKEPEPT 614
Cdd:PTZ00144   120 TGGAPPAAAPAAAAAAKAEKtTPEKPKAAAPTPEPPAASKPTPPAAAKPP---EPAPAAKPPPTPVARADPRET 190
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
551-634 4.50e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 227665 [Multi-domain]  Cd Length: 931  Bit Score: 40.96  E-value: 4.50e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  551 TPKEPEPTTPKEPEPTT--PKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPeptTRKEPE 628
Cdd:COG5373     45 GPVAKAAEQMAAPEAAEaaPLPAAAESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAAPAPAEPVEP---SLAANP 121

                   ....*.
gi 1907070847  629 PTTPKE 634
Cdd:COG5373    122 FAAAIE 127
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
558-618 4.51e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 40.65  E-value: 4.51e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070847  558 TTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 618
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
550-610 4.55e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 40.65  E-value: 4.55e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070847  550 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKE 610
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
320-410 4.59e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 41.00  E-value: 4.59e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  320 RKEPEPTTPKEPEPTTPKEPEPTtPKEPEPTTPKEPEPTTL-KEPEPTTPKEPEPTTP---KEPEPTTPKEPEP--TTPK 393
Cdd:PRK07994   430 QRAQGATKAKKSEPAAASRARPV-NSALERLASVRPAPSALeKAPAKKEAYRWKATNPvevKKEPVATPKALKKalEHEK 508
                           90
                   ....*....|....*..
gi 1907070847  394 EPEPTTPKEPEPTTPKE 410
Cdd:PRK07994   509 TPELAAKLAAEAIERDP 525
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
503-609 4.62e-03

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 40.49  E-value: 4.62e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  503 TPKEPEPTTTKEPESTTRKEpepTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTpkEPEPTTPKePEPTTPkePEPT 582
Cdd:PRK13335    68 TRQERTPKLEKAPNTNEEKT---SASKIEKISQPKQEEQKSLNISATPAPKQEQSQT--TTESTTPK-TKVTTP--PSTN 139
                           90       100
                   ....*....|....*....|....*...
gi 1907070847  583 TPKKPEPTTPKEPE-PTTPKEPEPTTPK 609
Cdd:PRK13335   140 TPQPMQSTKSDTPQsPTIKQAQTDMTPK 167
PRK01297 PRK01297
ATP-dependent RNA helicase RhlB; Provisional
533-596 4.68e-03

ATP-dependent RNA helicase RhlB; Provisional


Pssm-ID: 234938 [Multi-domain]  Cd Length: 475  Bit Score: 40.67  E-value: 4.68e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907070847  533 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPE 596
Cdd:PRK01297    13 EAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASLWKLE 76
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
438-518 4.88e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.44  E-value: 4.88e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  438 TTPKEPEPTTPKEPEPttlkEPEPTTPKEPEPTTPKEPEPttlKEPEPTTPKEPEPTtlkEPEPTTPKEPEPTTTKEPES 517
Cdd:PTZ00144   120 TGGAPPAAAPAAAAAA----KAEKTTPEKPKAAAPTPEPP---AASKPTPPAAAKPP---EPAPAAKPPPTPVARADPRE 189

                   .
gi 1907070847  518 T 518
Cdd:PTZ00144   190 T 190
PRK14960 PRK14960
DNA polymerase III subunit gamma/tau;
557-637 4.94e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237868 [Multi-domain]  Cd Length: 702  Bit Score: 40.80  E-value: 4.94e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  557 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTT----PKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTP 632
Cdd:PRK14960   360 PLAPNEILVSEPVQQNGQAEVGLNSQAQTAQEITPVSAVQPVEvisqPAMVEPEPEPEPEPEPEPEPEPEPEPEPEPEPE 439

                   ....*
gi 1907070847  633 KEPEP 637
Cdd:PRK14960   440 PEPQP 444
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
542-602 4.96e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 40.65  E-value: 4.96e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070847  542 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKE 602
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
539-611 5.01e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.44  E-value: 5.01e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907070847  539 PEPTTPKEPEPTTPKePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEP 611
Cdd:PTZ00144   122 GAPPAAAPAAAAAAK-AEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRETRVP 193
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
334-425 5.12e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 40.00  E-value: 5.12e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  334 TTPKEPEPTTPKEPEPTTPKEPEPTTlkepeptTPKEPEPTtpkePEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKepE 412
Cdd:PRK13042    23 TTTQAANATTPSSTKVEAPQSTPPST-------KVEAPQSK----PNATTPPSTKVEAPQQtPNATTPSSTKVETPQ--S 89
                           90
                   ....*....|...
gi 1907070847  413 PTTPKEPEPTTPK 425
Cdd:PRK13042    90 PTTKQVPTEINPK 102
PRK01297 PRK01297
ATP-dependent RNA helicase RhlB; Provisional
541-604 5.14e-03

ATP-dependent RNA helicase RhlB; Provisional


Pssm-ID: 234938 [Multi-domain]  Cd Length: 475  Bit Score: 40.67  E-value: 5.14e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907070847  541 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPE 604
Cdd:PRK01297    13 EAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASLWKLE 76
PRK10905 PRK10905
cell division protein DamX; Validated
334-449 5.34e-03

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 40.31  E-value: 5.34e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  334 TTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTT-PKEPEPTTPKEPEPTtpkepePTTPKEPEPTTPKEPe 412
Cdd:PRK10905   122 TLPTEPATVAPVRNGNASRQTAKTQTAERPATTRPARKQAVIePKKPQATAKTEPKPV------AQTPKRTEPAAPVAS- 194
                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1907070847  413 pttPKEPEPTTPKEPEPTTPKEPEPT-TPKEPEPTTPK 449
Cdd:PRK10905   195 ---TKAPAATSTPAPKETATTAPVQTaSPAQTTATPAA 229
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
320-409 5.35e-03

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 411407 [Multi-domain]  Cd Length: 684  Bit Score: 40.76  E-value: 5.35e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  320 RKEPEPTTPKEPeptTPKEPEPTTPKEPEPTTPKEPEPTTLKEPE-PTTPKEPEPTTPKEPEpttpkEPEPTTPKEPePT 398
Cdd:NF033838   404 RKAAEEDKVKEK---PAEQPQPAPAPQPEKPAPKPEKPAEQPKAEkPADQQAEEDYARRSEE-----EYNRLTQQQP-PK 474
                           90
                   ....*....|.
gi 1907070847  399 TPKEPEPTTPK 409
Cdd:NF033838   475 TEKPAQPSTPK 485
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
458-569 5.35e-03

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 40.49  E-value: 5.35e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  458 EPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEpEPTTLKEPEPTTPKEPEPTTTkePESTTRKePEPTTPkepePTTPK 537
Cdd:PRK13335    69 RQERTPKLEKAPNTNEEKTSASKIEKISQPKQE-EQKSLNISATPAPKQEQSQTT--TESTTPK-TKVTTP----PSTNT 140
                           90       100       110
                   ....*....|....*....|....*....|..
gi 1907070847  538 EPEPTTPKEPEPTTpkepePTTPKEPEPTTPK 569
Cdd:PRK13335   141 PQPMQSTKSDTPQS-----PTIKQAQTDMTPK 167
PHA03247 PHA03247
large tegument protein UL36; Provisional
323-503 5.42e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 5.42e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  323 PEPTTPKEPEPTTPKEPEPTTPKEPEPTTP----KEPEPTTL---KEPEPTTPKEPEPTTPKEPEP---TTPKEPEPTTP 392
Cdd:PHA03247   310 PAPPDPPPPAPAGDAEEEDDEDGAMEVVSPlprpRQHYPLGFpkrRRPTWTPPSSLEDLSAGRHHPkraSLPTRKRRSAR 389
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  393 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP--EPTTPKEPEPT-TPKEPE-PTTPKEPEPTTlkEPEPTTPKEPE 468
Cdd:PHA03247   390 HAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPasAPPPPATPLPSaEPGSDDgPAPPPERQPPA--PATEPAPDDPD 467
                          170       180       190
                   ....*....|....*....|....*....|....*
gi 1907070847  469 PTTPKEPEptTLKEPEPTTPKEPEPTTLKEPEPTT 503
Cdd:PHA03247   468 DATRKALD--ALRERRPPEPPGADLAELLGRHPDT 500
PRK12757 PRK12757
cell division protein FtsN; Provisional
551-624 5.42e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 40.03  E-value: 5.42e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907070847  551 TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTR 624
Cdd:PRK12757   111 TPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKEKEQR 184
TonB COG0810
Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope ...
420-547 5.47e-03

Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 223880 [Multi-domain]  Cd Length: 244  Bit Score: 39.77  E-value: 5.47e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  420 EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPttpkePEPTTPKEPEPTtlKEPEPTTPKEPEPTTLKEP 499
Cdd:COG0810     35 ELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETP-----PEPTPPKPKEKP--KPEKKPKKPKPKPKPKPKP 107
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1907070847  500 EPTTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEP 547
Cdd:COG0810    108 KPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASY 155
PRK12757 PRK12757
cell division protein FtsN; Provisional
543-612 5.57e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 39.64  E-value: 5.57e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  543 TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPE 612
Cdd:PRK12757   111 TPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKE 180
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
603-701 5.78e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 40.64  E-value: 5.78e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  603 PEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPTTPKKpeptttspkttTLKATTLAPKVTAPAEeiqnK 682
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPK-----------PAAAAAAAAAPAAPPA----A 102
                           90
                   ....*....|....*....
gi 1907070847  683 PEETTPASEDSDDSKTTLK 701
Cdd:PRK12270   103 AAAAAPAAAAVEDEVTPLR 121
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
343-428 6.00e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 227665 [Multi-domain]  Cd Length: 931  Bit Score: 40.58  E-value: 6.00e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  343 TPKEPEPTTPKEPEpttLKEPEPTTPKEPEPTTPKEPEPTTPkepEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPT 422
Cdd:COG5373     45 GPVAKAAEQMAAPE---AAEAAPLPAAAESIASPEVPPPVPP---APAQEGEAPAAEQPSAVPAPSAAPAPAEPVEPSLA 118

                   ....*.
gi 1907070847  423 TPKEPE 428
Cdd:COG5373    119 ANPFAA 124
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
511-633 6.15e-03

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 40.11  E-value: 6.15e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  511 TTKEPESTTRKEPEPTTPKEPEPTTPKEpepTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTpkEPEPTTPKkPEPT 590
Cdd:PRK13335    60 SATTQAANTRQERTPKLEKAPNTNEEKT---SASKIEKISQPKQEEQKSLNISATPAPKQEQSQT--TTESTTPK-TKVT 133
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1907070847  591 TPkePEPTTPKEPEPTTPKEPEpttpkepEPTTRKEPEPTTPK 633
Cdd:PRK13335   134 TP--PSTNTPQPMQSTKSDTPQ-------SPTIKQAQTDMTPK 167
PRK11633 PRK11633
cell division protein DedD; Provisional
552-650 6.22e-03

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 39.60  E-value: 6.22e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  552 PKEPEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPKKPEPTTPkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPT 630
Cdd:PRK11633    42 PLVPKPGDRDEPDMMPAaTQALPTQPPEGAAEAVRAGDAAAP-SLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPK 120
                           90       100
                   ....*....|....*....|
gi 1907070847  631 TPKEPEPTTPKEPEPTTPKK 650
Cdd:PRK11633   121 PQQKVEAPPAPKPEPKPVVE 140
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
406-466 6.26e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 40.26  E-value: 6.26e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070847  406 TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKE 466
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
502-570 6.26e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.44  E-value: 6.26e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  502 TTPKEP-EPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 570
Cdd:PTZ00144   120 TGGAPPaAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
317-409 6.43e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 40.00  E-value: 6.43e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  317 STTRKEPEPTTPKEPEPTTPKEPEPTT-PKEPEPTtpkepepttlkePEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKe 394
Cdd:PRK13042    22 TTTTQAANATTPSSTKVEAPQSTPPSTkVEAPQSK------------PNATTPPSTKVEAPQQtPNATTPSSTKVETPQ- 88
                           90
                   ....*....|....*
gi 1907070847  395 pEPTTPKEPEPTTPK 409
Cdd:PRK13042    89 -SPTTKQVPTEINPK 102
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
571-684 6.53e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.47  E-value: 6.53e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  571 PEPTTPKEPEPTTP-KKPEPTTPKEPEPTTP---KEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEPT 646
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQAAAAPAPAAApaaAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQA 455
                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1907070847  647 TPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQNKPE 684
Cdd:PRK14951   456 APETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
367-465 6.53e-03

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 40.11  E-value: 6.53e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  367 TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTpkEPEPTTPKePEPTTPkePEPTTPKEPEPT 446
Cdd:PRK13335    73 TPKLEKAPNTNEEKTSASKIEKISQPKQEEQKSLNISATPAPKQEQSQT--TTESTTPK-TKVTTP--PSTNTPQPMQST 147
                           90       100
                   ....*....|....*....|
gi 1907070847  447 TPKEPEPTTLKEPEP-TTPK 465
Cdd:PRK13335   148 KSDTPQSPTIKQAQTdMTPK 167
PRK10905 PRK10905
cell division protein DamX; Validated
325-417 6.59e-03

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 39.92  E-value: 6.59e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  325 PTTPKEPEPTTPKEPEPTT---PKEPEPTTPKEPEPTtlkepePTTPKEPEPTTPKEPepttPKEPEPTTPKEPEPTTPK 401
Cdd:PRK10905   143 AKTQTAERPATTRPARKQAviePKKPQATAKTEPKPV------AQTPKRTEPAAPVAS----TKAPAATSTPAPKETATT 212
                           90
                   ....*....|....*..
gi 1907070847  402 EPEPT-TPKEPEPTTPK 417
Cdd:PRK10905   213 APVQTaSPAQTTATPAA 229
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
323-507 6.64e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 40.29  E-value: 6.64e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  323 PEPTTPKEPEPT----TPKEPEPTTPKEPEPTT---PKEPEPTTLKEPEPTTP--KEPEPTTPKEPEPTTPKEPEPTTPK 393
Cdd:PLN03209   388 PTPPSSSPASSKsvdaVAKPAEPDVVPSPGSASnvpEVEPAQVEAKKTRPLSPyaRYEDLKPPTSPSPTAPTGVSPSVSS 467
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  394 epEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTpkePEPTTPKEPEPTTLKEPEPTTPKEPEPTTPK 473
Cdd:PLN03209   468 --TSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPTS---PSPAAPVGKVAPSSTNEVVKVGNSAPPTALA 542
                          170       180       190
                   ....*....|....*....|....*....|....
gi 1907070847  474 EPEPTTLKEPEPTTPKePEPTTLKEPEPTTPKEP 507
Cdd:PLN03209   543 DEQHHAQPKPRPLSPY-TMYEDLKPPTSPTPSPV 575
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
359-424 6.71e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.05  E-value: 6.71e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070847  359 TLKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKePEPTTPKEPEPTTPKEPEPTTP 424
Cdd:PTZ00144   117 EIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASK-PTPPAAAKPPEPAPAAKPPPTP 181
dnaA PRK14086
chromosomal replication initiator protein DnaA;
500-693 6.92e-03

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 40.19  E-value: 6.92e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  500 EPTTPKEPEPTTTKEPESTT--RKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEpepTTPKEPEPtTPKEPEPTTPK 577
Cdd:PRK14086    93 GEPAPPPPHARRTSEPELPRpgRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAY---QQRPEPGA-WPRAADDYGWQ 168
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  578 EPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRkePEPTTPKEPEPTTPkEPEPTTPKKPEPTTTS 657
Cdd:PRK14086   169 QQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPR--PDWDRPRRDRTDRP-EPPPGAGHVHRGGPGP 245
                          170       180       190
                   ....*....|....*....|....*....|....*.
gi 1907070847  658 PKTTTLKATTLAPKvtAPAEEIQNKPEETTPASEDS 693
Cdd:PRK14086   246 PERDDAPVVPIRPS--APGPLAAQPAPAPGPGEPTA 279
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
398-489 6.96e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 39.62  E-value: 6.96e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  398 TTPKEPEPTTPKEPEPTTPKEPEPTT-PKEPEPTtpkePEPTTPKEPEPTTPKEpepttlkEPEPTTPKEPEPTTPKepE 476
Cdd:PRK13042    23 TTTQAANATTPSSTKVEAPQSTPPSTkVEAPQSK----PNATTPPSTKVEAPQQ-------TPNATTPSSTKVETPQ--S 89
                           90
                   ....*....|...
gi 1907070847  477 PTTLKEPEPTTPK 489
Cdd:PRK13042    90 PTTKQVPTEINPK 102
PHA03264 PHA03264
envelope glycoprotein D; Provisional
516-615 7.05e-03

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 39.99  E-value: 7.05e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  516 ESTTRKEPEPTtPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEP 595
Cdd:PHA03264   259 EESKGYEPPPA-PSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPGPPRPAPDADRPEG 337
                           90       100
                   ....*....|....*....|.
gi 1907070847  596 EPTTPKEP-EPTTPKEPEPTT 615
Cdd:PHA03264   338 WPSLEAITfPPPTPATPAVPR 358
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
317-378 7.07e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 39.88  E-value: 7.07e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907070847  317 STTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKE 378
Cdd:TIGR00601   81 TGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
382-465 7.21e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 39.62  E-value: 7.21e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  382 TTPKEPEPTTPKEPEPTTPKEPEPTTpkepEPTTPKE-PEPTTPKEPEPTTPKE-PEPTTPKEPEPTTPKepEPTTLKEP 459
Cdd:PRK13042    23 TTTQAANATTPSSTKVEAPQSTPPST----KVEAPQSkPNATTPPSTKVEAPQQtPNATTPSSTKVETPQ--SPTTKQVP 96

                   ....*.
gi 1907070847  460 EPTTPK 465
Cdd:PRK13042    97 TEINPK 102
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
555-678 7.23e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.47  E-value: 7.23e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  555 PEPTTPKEPEPTTP-KEPEPTTPKEPEPTTPkkPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPK 633
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPA 453
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1907070847  634 EPEPTTPKEPEPTTPkkpepTTTSPKTTTLKATTLAPKVTAPAEE 678
Cdd:PRK14951   454 QAAPETVAIPVRVAP-----EPAVASAAPAPAAAPAAARLTPTEE 493
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
363-436 7.30e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 227665 [Multi-domain]  Cd Length: 931  Bit Score: 40.58  E-value: 7.30e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070847  363 PEPTTPKEPEPTT--PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 436
Cdd:COG5373     49 KAAEQMAAPEAAEaaPLPAAAESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFAA 124
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
448-603 7.45e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 40.48  E-value: 7.45e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  448 PKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPTT 527
Cdd:PRK14949   637 KKSSADRKPKTPPSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVPDPYDRPPWEEAP 716
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070847  528 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTpkEPEPTtpkePEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEP 603
Cdd:PRK14949   717 EVASANDGPNNAAEGNLSESVEDASNSELQAV--EQQAT----HQPQVQAEAQSPASTTALTQTSSEVQDTELNLV 786
PRK12757 PRK12757
cell division protein FtsN; Provisional
383-452 7.48e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 39.26  E-value: 7.48e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  383 TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 452
Cdd:PRK12757   111 TPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKE 180
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
387-462 7.51e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.05  E-value: 7.51e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070847  387 PEPTTPKEPEPTTPKePEPTTPKEPEPTTPKEPEPTTPkepeptTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPT 462
Cdd:PTZ00144   122 GAPPAAAPAAAAAAK-AEKTTPEKPKAAAPTPEPPAAS------KPTPPAAAKPPEPAPAAKPPPTPVARADPRET 190
PRK01297 PRK01297
ATP-dependent RNA helicase RhlB; Provisional
389-463 7.70e-03

ATP-dependent RNA helicase RhlB; Provisional


Pssm-ID: 234938 [Multi-domain]  Cd Length: 475  Bit Score: 39.90  E-value: 7.70e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907070847  389 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTT 463
Cdd:PRK01297    13 EAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASLWKLEDFVVEPQEGKT 87
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
498-601 7.70e-03

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 39.72  E-value: 7.70e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  498 EPEPTTPKEPEPTTTKEPESTTRKEPEPTTPKEpEPTTPKEPEPTTPKEPEP-TTPKEPEPTtpkePEPTTPkePEPTTP 576
Cdd:PRK13335    69 RQERTPKLEKAPNTNEEKTSASKIEKISQPKQE-EQKSLNISATPAPKQEQSqTTTESTTPK----TKVTTP--PSTNTP 141
                           90       100
                   ....*....|....*....|....*.
gi 1907070847  577 KEPEPTTPKKPE-PTTPKEPEPTTPK 601
Cdd:PRK13335   142 QPMQSTKSDTPQsPTIKQAQTDMTPK 167
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
350-418 7.77e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.05  E-value: 7.77e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  350 TTPKEPEPTTLKEPEPTTPK-EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 418
Cdd:PTZ00144   120 TGGAPPAAAPAAAAAAKAEKtTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
289-472 7.95e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 40.24  E-value: 7.95e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  289 KEPEPTTPKEPEPTTTKEPEPTTTKEPESTTRKEPEPTTPKEP--EPTTPKEPEPTTPKEPEPTTPKEPEPttlkePEPT 366
Cdd:PRK12323   398 APAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASarGPGGAPAPAPAPAAAPAAAARPAAAG-----PRPV 472
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  367 TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEP--TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPE 444
Cdd:PRK12323   473 AAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPaqPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPR 552
                          170       180
                   ....*....|....*....|....*...
gi 1907070847  445 PTTPKEPEPTtlkepePTTPKEPEPTTP 472
Cdd:PRK12323   553 AAAATEPVVA------PRPPRASASGLP 574
dnaA PRK14086
chromosomal replication initiator protein DnaA;
426-630 8.14e-03

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 40.19  E-value: 8.14e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  426 EPEPTTPkepePTTPKEPEPTTPKEPEPTTLKEPEPttpkEPEPTTPKEPEPTTLKEPEPTTPKEPEPttlkePEPTT-P 504
Cdd:PRK14086    93 GEPAPPP----PHARRTSEPELPRPGRRPYEGYGGP----RADDRPPGLPRQDQLPTARPAYPAYQQR-----PEPGAwP 159
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  505 KEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTpkEPEPTTPKEPEPTTPkEPEPTTP 584
Cdd:PRK14086   160 RAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHP--RPDWDRPRRDRTDRP-EPPPGAG 236
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|
gi 1907070847  585 KKPEPTTPKEPEPTTPKEPE----PTTPKEPEPTTPKEPEPTTRKEPEPT 630
Cdd:PRK14086   237 HVHRGGPGPPERDDAPVVPIrpsaPGPLAAQPAPAPGPGEPTARLNPKYT 286
FtsN COG3087
Cell division protein FtsN [Cell cycle control, cell division, chromosome partitioning];
471-625 8.39e-03

Cell division protein FtsN [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225629 [Multi-domain]  Cd Length: 264  Bit Score: 39.44  E-value: 8.39e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  471 TPKEPEPTTLKEPEPTT---PKEPEPTTLKEPEPTTPKEPEPTTTKEpesTTRKEPEPTTPKEPEPTTPKEpeptTPKEP 547
Cdd:COG3087     37 THHKKAPIPFLSNQGTGsllPNKPEEVWSYIKALEDRQIGVPQPTEP---AAVKDAERLTPEQRQLLEQME----VDQKA 109
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  548 EPTTPKE--PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKK-PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTR 624
Cdd:COG3087    110 QPTQLGEqpEQARIEEQPRTQSQKAQSQATTVQTQPVKPKPrPEKPQPVAPAPAPEPVEKAPKAEAAPPPKPKAEDAAET 189

                   .
gi 1907070847  625 K 625
Cdd:COG3087    190 R 190
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
509-676 8.53e-03

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 39.96  E-value: 8.53e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  509 PTTTKEPESTTRKEPEPTTPKEPEPTT-PKEPEPTTPKEPEPTTPKEP-EPTTPKEPEPTTPKEPEPTTPKEPEPTTPKK 586
Cdd:PRK13108   276 PKGREAPGALRGSEYVVDEALEREPAElAAAAVASAASAVGPVGPGEPnQPDDVAEAVKAEVAEVTDEVAAESVVQVADR 355
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  587 PEPTTPKePEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPE-PTTPKEPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKA 665
Cdd:PRK13108   356 DGESTPA-VEETSEADIEREQPGDLAGQAPAAHQVDAEAASAaPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAV 434
                          170
                   ....*....|.
gi 1907070847  666 TTLAPKVTAPA 676
Cdd:PRK13108   435 AGPGDDPAEPD 445
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
362-426 8.69e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 39.67  E-value: 8.69e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907070847  362 EPEPTTPKEPE--PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 426
Cdd:PTZ00144   123 APPAAAPAAAAaaKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
331-402 8.69e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 39.67  E-value: 8.69e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907070847  331 PEPTTPKEPEPTTPKEPEPTTPKEPEPttlkEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKE 402
Cdd:PTZ00144   122 GAPPAAAPAAAAAAKAEKTTPEKPKAA----APTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
430-490 8.93e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 39.49  E-value: 8.93e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070847  430 TTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKE 490
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PRK10905 PRK10905
cell division protein DamX; Validated
502-632 8.94e-03

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 39.54  E-value: 8.94e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  502 TTPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEpttpkEPEP 581
Cdd:PRK10905   106 TQPQNQQQLNNVAVNSTLPTEPATVAPVRNGNASRQTAKTQTAERPATTRPARKQAVIEPKKPQATAKTEP-----KPVA 180
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1907070847  582 TTPKKPEPTTPKEPepttPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTP 632
Cdd:PRK10905   181 QTPKRTEPAAPVAS----TKAPAATSTPAPKETATTAPVQTASPAQTTATP 227
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
527-604 9.09e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 227665 [Multi-domain]  Cd Length: 931  Bit Score: 40.19  E-value: 9.09e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  527 TPKEPEPTTPKEPEPTT--PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPE 604
Cdd:COG5373     45 GPVAKAAEQMAAPEAAEaaPLPAAAESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFAA 124
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
281-448 9.19e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 39.86  E-value: 9.19e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  281 KKPEPTTPKEPEPTTPKEPEPTTTKEPEPTTTKEPESTTRKEPEPTtpKEPEPTTPKEPEPTTP---KEPEPTTPKEPEP 357
Cdd:PRK12323   402 PPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGA--PAPAPAPAAAPAAAARpaaAGPRPVAAAAAAA 479
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  358 TTLKEPEPTTPKEPEPTTPKEPEPTTPKEPEP--TTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP 435
Cdd:PRK12323   480 PARAAPAAAPAPADDDPPPWEELPPEFASPAPaqPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEP 559
                          170
                   ....*....|....*
gi 1907070847  436 E--PTTPKEPEPTTP 448
Cdd:PRK12323   560 VvaPRPPRASASGLP 574
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
274-596 9.20e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.97  E-value: 9.20e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  274 KEPPPTTKKPEPTTPKEPEPTTPKEPEPTTTKEPEptttkepesttrkePEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 353
Cdd:PRK07764   439 PAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAA--------------PEPTAAPAPAPPAAPAPAAAPAAPAAPAAPA 504
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  354 EPEP----------------------TTLKEPEPT-----------------------TPKEPE---------------- 372
Cdd:PRK07764   505 GADDaatlrerwpeilaavpkrsrktWAILLPEATvlgvrgdtlvlgfstgglarrfaSPGNAEvlvtalaeelggdwqv 584
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  373 ----PTTPKEPEPTTPKEPEPTTPKE--PEPTTPKEPEPTTPKEPePTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPT 446
Cdd:PRK07764   585 eavvGPAPGAAGGEGPPAPASSGPPEeaARPAAPAAPAAPAAPAP-AGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDAS 663
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  447 TPKEPEPTTLKEPEPTTPkePEPTTPKEPEPTTlkePEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPEPT 526
Cdd:PRK07764   664 DGGDGWPAKAGGAAPAAP--PPAPAPAAPAAPA---GAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDP 738
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  527 TPKEPEPTTPKEPEPtTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPttpkkPEPTTPKEPE 596
Cdd:PRK07764   739 VPLPPEPDDPPDPAG-APAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPS-----MDDEDRRDAE 802
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
446-506 9.25e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 39.49  E-value: 9.25e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907070847  446 TTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKE 506
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PRK11633 PRK11633
cell division protein DedD; Provisional
448-552 9.26e-03

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 38.83  E-value: 9.26e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  448 PKEPEPTTLKEPEPTTP-KEPEPTTPKEPEPTTLKEPEPTTPkEPEPTTLkePEPTTPKEPEPTTTKEPESTTRKEPEPT 526
Cdd:PRK11633    42 PLVPKPGDRDEPDMMPAaTQALPTQPPEGAAEAVRAGDAAAP-SLDPATV--APPNTPVEPEPAPVEPPKPKPVEKPKPK 118
                           90       100
                   ....*....|....*....|....*.
gi 1907070847  527 TPKEPEPTTPKEPEPTTPKEPEPTTP 552
Cdd:PRK11633   119 PKPQQKVEAPPAPKPEPKPVVEEKAA 144
PHA03169 PHA03169
hypothetical protein; Provisional
369-577 9.56e-03

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 39.57  E-value: 9.56e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  369 KEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK--EPEPTTPKEPEPT 446
Cdd:PHA03169    44 AKPAPPAPTTSGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSgsAEELASGLSPENT 123
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  447 TPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTlKEPEPTTPKEPEPTTLKEPEPTTPKEPEPtttkEPESTTRKEPEPT 526
Cdd:PHA03169   124 SGSSPESPASHSPPPSPPSHPGPHEPAPPESHN-PSPNQQPSSFLQPSHEDSPEEPEPPTSEP----EPDSPGPPQSETP 198
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1907070847  527 TPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPK 577
Cdd:PHA03169   199 TSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFPG 249
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
427-502 9.64e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 39.67  E-value: 9.64e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907070847  427 PEPTTPKEPEPTTPKePEPTTPKEPEPttlKEPEPTTPKEPEPTTPKEPEPTtlkEPEPTTPKEPEPTTLKEPEPT 502
Cdd:PTZ00144   122 GAPPAAAPAAAAAAK-AEKTTPEKPKA---AAPTPEPPAASKPTPPAAAKPP---EPAPAAKPPPTPVARADPRET 190
COG3889 COG3889
Predicted periplasmic protein [Function unknown];
445-594 9.85e-03

Predicted periplasmic protein [Function unknown];


Pssm-ID: 226406 [Multi-domain]  Cd Length: 872  Bit Score: 39.85  E-value: 9.85e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  445 PTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPESTTRKEPE 524
Cdd:COG3889    694 PPVGWLPYTNSLYKATTLSSEAKNPDTVKIGQALTVYGSLEVFPAGENWGFIPTTKRVKVRIMDPASGTGTSITTSGTFT 773
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907070847  525 PTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTPKE 594
Cdd:COG3889    774 AEVPQSPTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSSPSPTQTTSPTQTSTSTTTTTSPSQ 843
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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