NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1907195342|ref|XP_036010560|]
View 

microtubule-associated protein 4 isoform X30 [Mus musculus]

Protein Classification

PHA03247 and Tubulin-binding domain-containing protein( domain architecture ID 10450448)

PHA03247 and Tubulin-binding domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Tubulin-binding pfam00418
Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, ...
 774-803 7.77e-13

Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, MAP4 and Tau, as well as other animal homologs. MAP4 is present in many tissues but is usually absent from neurons; MAP2 and Tau are mainly neuronal. Members of this family have the ability to bind to and stabilize microtubules. As a result, they are involved in neuronal migration, supporting dendrite elongation, and regulating microtubules during mitotic metaphase. Note that Tau is involved in neurofibrillary tangle formation in Alzheimer's disease and some other dementias. This family features a C-terminal microtubule binding repeat that contains a conserved KXGS motif.


:

Pssm-ID: 459807 [Multi-domain]  Cd Length: 30  Bit Score: 63.20  E-value: 7.77e-13
                          10        20        30
                  ....*....|....*....|....*....|
gi 1907195342 774 VQIQNKKVDISKVSSKCGSKANIKHKPGGG 803
Cdd:pfam00418   1 VKIESKKLDFSKVQSKCGSKDNIKHKPGGG 30
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 516-750 3.79e-09

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 61.11  E-value: 3.79e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342  516 EKKAKPLATTQPAKTSTSKAKTQPTSLPKQPAPTTSGGLNKKPMSLASGSVPAAPHKRPAAATATARPSTLPARDVKPKP 595
Cdd:PHA03247  2709 EPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAV 2788

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342  596 ITEAKVAEKRTSPSKPSSAPALKPGPktTPTVSKATSPSTLVSTGPSSR--SPATTLPKRPTSIKTEGKPA---DVKRM- 669
Cdd:PHA03247  2789 ASLSESRESLPSPWDPADPPAAVLAP--AAALPPAASPAGPLPPPTSAQptAPPPPPGPPPPSLPLGGSVApggDVRRRp 2866

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342  670 -----TAKSASADLSRSKTTSASSVKRNTTPTgAAPPAGMTSTRVKPMSAPSRSSGALSVDKKPTSTKPSSSAPRVSRLA 744
Cdd:PHA03247  2867 psrspAAKPAAPARPPVRRLARPAVSRSTESF-ALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAP 2945


                   ....*.
gi 1907195342  745 TTVSAP 750
Cdd:PHA03247  2946 TTDPAG 2951
Tubulin-binding pfam00418
Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, ...
 805-835 1.29e-08

Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, MAP4 and Tau, as well as other animal homologs. MAP4 is present in many tissues but is usually absent from neurons; MAP2 and Tau are mainly neuronal. Members of this family have the ability to bind to and stabilize microtubules. As a result, they are involved in neuronal migration, supporting dendrite elongation, and regulating microtubules during mitotic metaphase. Note that Tau is involved in neurofibrillary tangle formation in Alzheimer's disease and some other dementias. This family features a C-terminal microtubule binding repeat that contains a conserved KXGS motif.


:

Pssm-ID: 459807 [Multi-domain]  Cd Length: 30  Bit Score: 51.26  E-value: 1.29e-08
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1907195342 805 VKIESQKLNFKeKAQAKVGSLDNVGHLPAGG 835
Cdd:pfam00418   1 VKIESKKLDFS-KVQSKCGSKDNIKHKPGGG 30
Tubulin-binding pfam00418
Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, ...
 751-772 3.93e-07

Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, MAP4 and Tau, as well as other animal homologs. MAP4 is present in many tissues but is usually absent from neurons; MAP2 and Tau are mainly neuronal. Members of this family have the ability to bind to and stabilize microtubules. As a result, they are involved in neuronal migration, supporting dendrite elongation, and regulating microtubules during mitotic metaphase. Note that Tau is involved in neurofibrillary tangle formation in Alzheimer's disease and some other dementias. This family features a C-terminal microtubule binding repeat that contains a conserved KXGS motif.


:

Pssm-ID: 459807 [Multi-domain]  Cd Length: 30  Bit Score: 47.02  E-value: 3.93e-07
                          10        20
                  ....*....|....*....|..
gi 1907195342 751 DLKSVRSKVGSTENIKHQPGGG 772
Cdd:pfam00418   9 DFSKVQSKCGSKDNIKHKPGGG 30
 
Name Accession Description Interval E-value
Tubulin-binding pfam00418
Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, ...
 774-803 7.77e-13

Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, MAP4 and Tau, as well as other animal homologs. MAP4 is present in many tissues but is usually absent from neurons; MAP2 and Tau are mainly neuronal. Members of this family have the ability to bind to and stabilize microtubules. As a result, they are involved in neuronal migration, supporting dendrite elongation, and regulating microtubules during mitotic metaphase. Note that Tau is involved in neurofibrillary tangle formation in Alzheimer's disease and some other dementias. This family features a C-terminal microtubule binding repeat that contains a conserved KXGS motif.


Pssm-ID: 459807 [Multi-domain]  Cd Length: 30  Bit Score: 63.20  E-value: 7.77e-13
                          10        20        30
                  ....*....|....*....|....*....|
gi 1907195342 774 VQIQNKKVDISKVSSKCGSKANIKHKPGGG 803
Cdd:pfam00418   1 VKIESKKLDFSKVQSKCGSKDNIKHKPGGG 30
PHA03247 PHA03247
large tegument protein UL36; Provisional
 516-750 3.79e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 61.11  E-value: 3.79e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342  516 EKKAKPLATTQPAKTSTSKAKTQPTSLPKQPAPTTSGGLNKKPMSLASGSVPAAPHKRPAAATATARPSTLPARDVKPKP 595
Cdd:PHA03247  2709 EPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAV 2788

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342  596 ITEAKVAEKRTSPSKPSSAPALKPGPktTPTVSKATSPSTLVSTGPSSR--SPATTLPKRPTSIKTEGKPA---DVKRM- 669
Cdd:PHA03247  2789 ASLSESRESLPSPWDPADPPAAVLAP--AAALPPAASPAGPLPPPTSAQptAPPPPPGPPPPSLPLGGSVApggDVRRRp 2866

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342  670 -----TAKSASADLSRSKTTSASSVKRNTTPTgAAPPAGMTSTRVKPMSAPSRSSGALSVDKKPTSTKPSSSAPRVSRLA 744
Cdd:PHA03247  2867 psrspAAKPAAPARPPVRRLARPAVSRSTESF-ALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAP 2945


                   ....*.
gi 1907195342  745 TTVSAP 750
Cdd:PHA03247  2946 TTDPAG 2951
Tubulin-binding pfam00418
Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, ...
 805-835 1.29e-08

Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, MAP4 and Tau, as well as other animal homologs. MAP4 is present in many tissues but is usually absent from neurons; MAP2 and Tau are mainly neuronal. Members of this family have the ability to bind to and stabilize microtubules. As a result, they are involved in neuronal migration, supporting dendrite elongation, and regulating microtubules during mitotic metaphase. Note that Tau is involved in neurofibrillary tangle formation in Alzheimer's disease and some other dementias. This family features a C-terminal microtubule binding repeat that contains a conserved KXGS motif.


Pssm-ID: 459807 [Multi-domain]  Cd Length: 30  Bit Score: 51.26  E-value: 1.29e-08
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1907195342 805 VKIESQKLNFKeKAQAKVGSLDNVGHLPAGG 835
Cdd:pfam00418   1 VKIESKKLDFS-KVQSKCGSKDNIKHKPGGG 30
Tubulin-binding pfam00418
Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, ...
 751-772 3.93e-07

Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, MAP4 and Tau, as well as other animal homologs. MAP4 is present in many tissues but is usually absent from neurons; MAP2 and Tau are mainly neuronal. Members of this family have the ability to bind to and stabilize microtubules. As a result, they are involved in neuronal migration, supporting dendrite elongation, and regulating microtubules during mitotic metaphase. Note that Tau is involved in neurofibrillary tangle formation in Alzheimer's disease and some other dementias. This family features a C-terminal microtubule binding repeat that contains a conserved KXGS motif.


Pssm-ID: 459807 [Multi-domain]  Cd Length: 30  Bit Score: 47.02  E-value: 3.93e-07
                          10        20
                  ....*....|....*....|..
gi 1907195342 751 DLKSVRSKVGSTENIKHQPGGG 772
Cdd:pfam00418   9 DFSKVQSKCGSKDNIKHKPGGG 30
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 523-894 7.14e-07

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 53.38  E-value: 7.14e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 523 ATTQPAKTSTSKAKTQPTSLPKQ-----PAPTTSGGLnkkpmslasgsvPAAPHKRPAAATATARPSTLPARDV-KPKPI 596
Cdd:pfam05109 412 ATTTTHKVIFSKAPESTTTSPTLnttgfAAPNTTTGL------------PSSTHVPTNLTAPASTGPTVSTADVtSPTPA 479

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 597 TEAKVAekrtSPSKPSSAPALKPGPKTTPTVSKATSPSTLVSTGPSSRSPATTLP-----------KRPTSIKTEGKP-- 663
Cdd:pfam05109 480 GTTSGA----SPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPtpnatsptlgkTSPTSAVTTPTPna 555

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 664 -ADVKRMTAKSASADLSRSKTTSASSVKRNTTPTGAAPPAGMTS------------TRVKPM--SAPSRSSGALSVDKKP 728
Cdd:pfam05109 556 tSPTPAVTTPTPNATIPTLGKTSPTSAVTTPTPNATSPTVGETSpqanttnhtlggTSSTPVvtSPPKNATSAVTTGQHN 635

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 729 -TSTKPSSSAPRVSRLATTVSaPDLKSVRSKVGSTENIKHQPGGGRVqiqnKKVDISKVSSKCGSKANIKHKPGggdvki 807
Cdd:pfam05109 636 iTSSSTSSMSLRPSSISETLS-PSTSDNSTSHMPLLTSAHPTGGENI----TQVTPASTSTHHVSTSSPAPRPG------ 704

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 808 esqklnfkekAQAKVGSLDNVGHLPAGGAVKVTEGGGSEALPCPGPPAGEEPVIPEAAPDAGAPTSASGlSGHTTLSGGG 887
Cdd:pfam05109 705 ----------TTSQASGPGNSSTSTKPGEVNVTKGTPPKNATSPQAPSGQKTAVPTVTSTGGKANSTTG-GKHTTGHGAR 773


                  ....*..
gi 1907195342 888 DQREPQT 894
Cdd:pfam05109 774 TSTEPTT 780
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 678-754 8.60e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 39.49  E-value: 8.60e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907195342 678 LSRSKTTSASSVKRNTTPTGAAPPAgmTSTRVKPMSAPSRSSGALSVDKKPTSTKPSSSAPRVSRLATTVSAPDLKS 754
Cdd:TIGR00601  74 VSKPKTGTGKVAPPAATPTSAPTPT--PSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSSGSDAAS 148
 
Name Accession Description Interval E-value
Tubulin-binding pfam00418
Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, ...
 774-803 7.77e-13

Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, MAP4 and Tau, as well as other animal homologs. MAP4 is present in many tissues but is usually absent from neurons; MAP2 and Tau are mainly neuronal. Members of this family have the ability to bind to and stabilize microtubules. As a result, they are involved in neuronal migration, supporting dendrite elongation, and regulating microtubules during mitotic metaphase. Note that Tau is involved in neurofibrillary tangle formation in Alzheimer's disease and some other dementias. This family features a C-terminal microtubule binding repeat that contains a conserved KXGS motif.


Pssm-ID: 459807 [Multi-domain]  Cd Length: 30  Bit Score: 63.20  E-value: 7.77e-13
                          10        20        30
                  ....*....|....*....|....*....|
gi 1907195342 774 VQIQNKKVDISKVSSKCGSKANIKHKPGGG 803
Cdd:pfam00418   1 VKIESKKLDFSKVQSKCGSKDNIKHKPGGG 30
PHA03247 PHA03247
large tegument protein UL36; Provisional
 516-750 3.79e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 61.11  E-value: 3.79e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342  516 EKKAKPLATTQPAKTSTSKAKTQPTSLPKQPAPTTSGGLNKKPMSLASGSVPAAPHKRPAAATATARPSTLPARDVKPKP 595
Cdd:PHA03247  2709 EPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAV 2788

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342  596 ITEAKVAEKRTSPSKPSSAPALKPGPktTPTVSKATSPSTLVSTGPSSR--SPATTLPKRPTSIKTEGKPA---DVKRM- 669
Cdd:PHA03247  2789 ASLSESRESLPSPWDPADPPAAVLAP--AAALPPAASPAGPLPPPTSAQptAPPPPPGPPPPSLPLGGSVApggDVRRRp 2866

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342  670 -----TAKSASADLSRSKTTSASSVKRNTTPTgAAPPAGMTSTRVKPMSAPSRSSGALSVDKKPTSTKPSSSAPRVSRLA 744
Cdd:PHA03247  2867 psrspAAKPAAPARPPVRRLARPAVSRSTESF-ALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAP 2945


                   ....*.
gi 1907195342  745 TTVSAP 750
Cdd:PHA03247  2946 TTDPAG 2951
Tubulin-binding pfam00418
Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, ...
 805-835 1.29e-08

Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, MAP4 and Tau, as well as other animal homologs. MAP4 is present in many tissues but is usually absent from neurons; MAP2 and Tau are mainly neuronal. Members of this family have the ability to bind to and stabilize microtubules. As a result, they are involved in neuronal migration, supporting dendrite elongation, and regulating microtubules during mitotic metaphase. Note that Tau is involved in neurofibrillary tangle formation in Alzheimer's disease and some other dementias. This family features a C-terminal microtubule binding repeat that contains a conserved KXGS motif.


Pssm-ID: 459807 [Multi-domain]  Cd Length: 30  Bit Score: 51.26  E-value: 1.29e-08
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1907195342 805 VKIESQKLNFKeKAQAKVGSLDNVGHLPAGG 835
Cdd:pfam00418   1 VKIESKKLDFS-KVQSKCGSKDNIKHKPGGG 30
Tubulin-binding pfam00418
Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, ...
 751-772 3.93e-07

Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, MAP4 and Tau, as well as other animal homologs. MAP4 is present in many tissues but is usually absent from neurons; MAP2 and Tau are mainly neuronal. Members of this family have the ability to bind to and stabilize microtubules. As a result, they are involved in neuronal migration, supporting dendrite elongation, and regulating microtubules during mitotic metaphase. Note that Tau is involved in neurofibrillary tangle formation in Alzheimer's disease and some other dementias. This family features a C-terminal microtubule binding repeat that contains a conserved KXGS motif.


Pssm-ID: 459807 [Multi-domain]  Cd Length: 30  Bit Score: 47.02  E-value: 3.93e-07
                          10        20
                  ....*....|....*....|..
gi 1907195342 751 DLKSVRSKVGSTENIKHQPGGG 772
Cdd:pfam00418   9 DFSKVQSKCGSKDNIKHKPGGG 30
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 523-894 7.14e-07

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 53.38  E-value: 7.14e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 523 ATTQPAKTSTSKAKTQPTSLPKQ-----PAPTTSGGLnkkpmslasgsvPAAPHKRPAAATATARPSTLPARDV-KPKPI 596
Cdd:pfam05109 412 ATTTTHKVIFSKAPESTTTSPTLnttgfAAPNTTTGL------------PSSTHVPTNLTAPASTGPTVSTADVtSPTPA 479

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 597 TEAKVAekrtSPSKPSSAPALKPGPKTTPTVSKATSPSTLVSTGPSSRSPATTLP-----------KRPTSIKTEGKP-- 663
Cdd:pfam05109 480 GTTSGA----SPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPtpnatsptlgkTSPTSAVTTPTPna 555

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 664 -ADVKRMTAKSASADLSRSKTTSASSVKRNTTPTGAAPPAGMTS------------TRVKPM--SAPSRSSGALSVDKKP 728
Cdd:pfam05109 556 tSPTPAVTTPTPNATIPTLGKTSPTSAVTTPTPNATSPTVGETSpqanttnhtlggTSSTPVvtSPPKNATSAVTTGQHN 635

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 729 -TSTKPSSSAPRVSRLATTVSaPDLKSVRSKVGSTENIKHQPGGGRVqiqnKKVDISKVSSKCGSKANIKHKPGggdvki 807
Cdd:pfam05109 636 iTSSSTSSMSLRPSSISETLS-PSTSDNSTSHMPLLTSAHPTGGENI----TQVTPASTSTHHVSTSSPAPRPG------ 704

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 808 esqklnfkekAQAKVGSLDNVGHLPAGGAVKVTEGGGSEALPCPGPPAGEEPVIPEAAPDAGAPTSASGlSGHTTLSGGG 887
Cdd:pfam05109 705 ----------TTSQASGPGNSSTSTKPGEVNVTKGTPPKNATSPQAPSGQKTAVPTVTSTGGKANSTTG-GKHTTGHGAR 773


                  ....*..
gi 1907195342 888 DQREPQT 894
Cdd:pfam05109 774 TSTEPTT 780
PHA03247 PHA03247
large tegument protein UL36; Provisional
 517-749 7.34e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.40  E-value: 7.34e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342  517 KKAKPLATTQPAKTSTSKAKTQ--PTSLPKQPAPTTSGGLNKKPMSLAS-GSVPAAPHKRPAAATATARPSTLPARDVKP 593
Cdd:PHA03247  2585 RARRPDAPPQSARPRAPVDDRGdpRGPAPPSPLPPDTHAPDPPPPSPSPaANEPDPHPPPTVPPPERPRDDPAPGRVSRP 2664

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342  594 KPITEAKVAEKRTSPSKPSSAPALKPGPKTTPTVSKATSPSTLVSTGPSSRSPATTLPKRPTSIKTEGKPADVKRMTAKS 673
Cdd:PHA03247  2665 RRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAV 2744

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907195342  674 ASADLSRSKTTSASSVKRNTTPTGAAPPAGMTSTRVKPMSAPSRSSGALSVDKKPTSTKPSSSAPRVSRLATTVSA 749
Cdd:PHA03247  2745 PAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPP 2820
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 486-763 1.72e-06

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 52.10  E-value: 1.72e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342  486 VSRQEEAKAAVGVTGNDITTPPNKEPPPSPEKKAKPLATTQPAKTSTSKAKTQPTSLPKQPAPTTSGGlnKKPMSLASGS 565
Cdd:PHA03307    44 VSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGP--SSPDPPPPTP 121

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342  566 VPAAP---HKRPAAATATARPSTLPARDVKPKPITEAKVAEKRTSPSKPSSAPALKPGPKTTPTVSKAtSPSTLVSTGPS 642
Cdd:PHA03307   122 PPASPppsPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSP-PAEPPPSTPPA 200

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342  643 SRSPATTLPKRPTSIKTEGKPADVKRMTAKSASADLSRSKTTSASSVK---RNTTPTGAAPPAGMTSTRVKPMSAPSRSS 719
Cdd:PHA03307   201 AASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGwgpENECPLPRPAPITLPTRIWEASGWNGPSS 280

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....
gi 1907195342  720 GALSVdKKPTSTKPSSSAPRVSRLATTVSAPDLKSVRSKVGSTE 763
Cdd:PHA03307   281 RPGPA-SSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRE 323
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 522-772 3.74e-05

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 47.60  E-value: 3.74e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 522 LATTQPAKTSTSKAKTQPTSLPKQPAPTtsgglnkkpmslASGSVPAAPHKRPAAATATARPSTLPARDVKPKP-ITEAK 600
Cdd:pfam05109 527 VTTPTPNATSPTLGKTSPTSAVTTPTPN------------ATSPTPAVTTPTPNATIPTLGKTSPTSAVTTPTPnATSPT 594

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 601 VAEkrTSPSKPSSAPALKpGPKTTPTV-SKATSPSTLVSTGPS--SRSPATTLPKRPTSIKTEGKPAD-------VKRMT 670
Cdd:pfam05109 595 VGE--TSPQANTTNHTLG-GTSSTPVVtSPPKNATSAVTTGQHniTSSSTSSMSLRPSSISETLSPSTsdnstshMPLLT 671

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 671 AKSASADLSRSKTTSASSVKRNTTPTGAAPPAGMTSTRVKP-MSAPSRSSGALSVDK-KPTSTKPSSSAPRVSRLATtvs 748
Cdd:pfam05109 672 SAHPTGGENITQVTPASTSTHHVSTSSPAPRPGTTSQASGPgNSSTSTKPGEVNVTKgTPPKNATSPQAPSGQKTAV--- 748

                         250       260
                  ....*....|....*....|....
gi 1907195342 749 aPDLKSVRSKVGSTENIKHQPGGG 772
Cdd:pfam05109 749 -PTVTSTGGKANSTTGGKHTTGHG 771
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 519-770 4.25e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 47.47  E-value: 4.25e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342  519 AKPLATTQPAKTSTSKAKTQPTSLPKQPAPTTSGGLNKKPMSLASGSVPAAPHKRPAAATATARPSTLPARDVKPKPITE 598
Cdd:PHA03307   173 ALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPE 252

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342  599 AKVAEKRTSPSKPSSAPALKPGPKTTPTVSKATSPSTlvstGPSSRSPATtlpkrptsikTEGKPADVKRMTAKSASADL 678
Cdd:PHA03307   253 NECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSS----SPRERSPSP----------SPSSPGSGPAPSSPRASSSS 318

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342  679 SRSKTTSASSvkrnTTPTGAAPPAGMTSTRVKPMSAPSRSSGALSVDKKPTSTKPSSSAPRVSRlATTVSAPDLKSVRSK 758
Cdd:PHA03307   319 SSSRESSSSS----TSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSP-AASAGRPTRRRARAA 393

                          250
                   ....*....|..
gi 1907195342  759 VGSTENIKHQPG 770
Cdd:PHA03307   394 VAGRARRRDATG 405
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
519-750 4.69e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 47.15  E-value: 4.69e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 519 AKPLATTQPAKTSTSKAKTQPTSLPKQPAPTTSGGLNKKPMSLASGSVPAAPhKRPAAATATARPSTLPARDVKPKPITE 598
Cdd:PRK07003  375 RVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAP-PAAPAPPATADRGDDAADGDAPVPAKA 453

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 599 AKVAEKRTSPSKPSSAPALKPGPKTTPTVSK----ATSPSTLVSTGPSSRSPATTLPKRPTSIKTEGKPAdvkrmtAKSA 674
Cdd:PRK07003  454 NARASADSRCDERDAQPPADSGSASAPASDAppdaAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPA------AAAP 527

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907195342 675 SADLSRSKTTSASSVKRNTtpTGAAppAGMTSTRVKPMSAPSRSSGALSVDKKPTSTKPSSSAPRVSRLATTVSAP 750
Cdd:PRK07003  528 PAPEARPPTPAAAAPAARA--GGAA--AALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTP 599
PHA03247 PHA03247
large tegument protein UL36; Provisional
 474-758 1.59e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.70  E-value: 1.59e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342  474 PSLLLEETPRDGVSRQEEAKAAVGVTGNDITTPPNKEPPPSPEKKAKPLATTQPAKTSTSKAKTQPTSLPKQPAPTTSGG 553
Cdd:PHA03247  2580 PAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPG 2659

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342  554 ---LNKKPMSLASGSVPAAPHKRPAAATATARPSTL------PARDVKPKPITEAKVAEKRTSPSKPSSAPALKPGPKTT 624
Cdd:PHA03247  2660 rvsRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLtsladpPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAP 2739

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342  625 PTVSKATSPSTLVSTGPSSRSPATTLPKRPTSIKTEGKPADVKRMTAKSASADLSRSKTTSASSVKRNTTPTGAAPPAGM 704
Cdd:PHA03247  2740 APPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALP 2819

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907195342  705 TSTRVKPMSAPSRSSGALSVDKKPTSTKPS-----SSAP--RVSRLATTVSAPDLKSVRSK 758
Cdd:PHA03247  2820 PAASPAGPLPPPTSAQPTAPPPPPGPPPPSlplggSVAPggDVRRRPPSRSPAAKPAAPAR 2880
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 548-898 2.58e-04

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 44.57  E-value: 2.58e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 548 PTTSGGLNKKpmslASGSVPAAPHKRPAAATATARPSTL--PARDVKPKPITEAKVAEKRTSPSKP----SSAPALKPGP 621
Cdd:pfam17823 100 PATREGAADG----AASRALAAAASSSPSSAAQSLPAAIaaLPSEAFSAPRAAACRANASAAPRAAiaaaSAPHAASPAP 175

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 622 KTTPTVSKATSPSTLVSTGP---SSRSPATTLPKRPTSiktegkpadvkrmtaKSASADLSRSKTTSASSVKRNTTPTGA 698
Cdd:pfam17823 176 RTAASSTTAASSTTAASSAPttaASSAPATLTPARGIS---------------TAATATGHPAAGTALAAVGNSSPAAGT 240

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 699 APPAGMTSTrvkPMSAPSRSSGALSVdkKPTSTKPSSSAPRVSRLATTVSAPDLKSVRSKVGSTeniKHQPGGGRVQIQN 778
Cdd:pfam17823 241 VTAAVGTVT---PAALATLAAAAGTV--ASAAGTINMGDPHARRLSPAKHMPSDTMARNPAAPM---GAQAQGPIIQVST 312

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 779 KKVDISKVSSKCGSKANIKHKPGG-GDVKIESQKLNFKEKAQAKVGSLDNVGHLPAGGAVKVtEGGGSEALPCPGPPAGE 857
Cdd:pfam17823 313 DQPVHNTAGEPTPSPSNTTLEPNTpKSVASTNLAVVTTTKAQAKEPSASPVPVLHTSMIPEV-EATSPTTQPSPLLPTQG 391

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 1907195342 858 E--PVIPEAAPDAGAPTSASGLSGHTTLSGGGDQREPQTLDSQ 898
Cdd:pfam17823 392 AagPGILLAPEQVATEATAGTASAGPTPRSSGDPKTLAMASCQ 434
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 522-803 2.76e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 44.91  E-value: 2.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 522 LATTQPAKTSTSKAKTQPTSLPKQPAPTTSGGLNKKPMSLASGSVPAAPHKRPAAATATARPSTLPARDVKPKPiteakv 601
Cdd:pfam05109 473 VTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPNATSPTLGKTSPTS------ 546

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 602 AEKRTSPSKPSSAPAL-KPGPKTT-PTVSKATSPSTLVSTGPSSRSPAT--TLPKRPTSIKTEGKPADVKRMTA--KSAS 675
Cdd:pfam05109 547 AVTTPTPNATSPTPAVtTPTPNATiPTLGKTSPTSAVTTPTPNATSPTVgeTSPQANTTNHTLGGTSSTPVVTSppKNAT 626

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 676 ADLS------RSKTTSASSVKRNTTPTGAAPPAGMTSTRVKPMSAPSRSSGALSVDK-KPTST-----KPSSSAPRVSRl 743
Cdd:pfam05109 627 SAVTtgqhniTSSSTSSMSLRPSSISETLSPSTSDNSTSHMPLLTSAHPTGGENITQvTPASTsthhvSTSSPAPRPGT- 705

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907195342 744 ATTVSAPDLKSVRSKVGSTENIKHQPGGGRVQIQ---NKKVDISKVSSKcGSKANI----KHKPGGG 803
Cdd:pfam05109 706 TSQASGPGNSSTSTKPGEVNVTKGTPPKNATSPQapsGQKTAVPTVTST-GGKANSttggKHTTGHG 771
PHA03247 PHA03247
large tegument protein UL36; Provisional
 527-763 2.86e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.93  E-value: 2.86e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342  527 PAKTSTSKAKTQPTSLPKQPAPTTSGGLNKKPMSLASGSVPAAPhkrPAAATATARPSTLPARDVKPKPITEAKVAEKRT 606
Cdd:PHA03247  2561 PAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDD---RGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANE 2637

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342  607 SPSKPSSAPALKPGPKTTPTVSKATSPSTLVSTGPSSRSPATTL-PKRPTSIKTEGKPADVKRMTAKSASADLSRSKTTS 685
Cdd:PHA03247  2638 PDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQrPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVS 2717

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907195342  686 ASSVKRNTTPT-GAAPPAGMTSTRVKPMSAPSRSSGALSVDKKPTSTKPSSSAPRVSRLATTVSAPDLKSVRSKVGSTE 763
Cdd:PHA03247  2718 ATPLPPGPAAArQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRE 2796
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
545-741 1.05e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 42.94  E-value: 1.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 545 QPAPTTSGGLNKKPMSLASGSVPAAPHKRPAAATATARPSTLPAR-----DVKPKPITEAKVAEKRTSPSKPSSAPALKP 619
Cdd:PRK12323  373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARavaaaPARRSPAPEALAAARQASARGPGGAPAPAP 452

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 620 GPKTTPTVSKATSPStlvstGPSSRSPATTLPKRPTSIKTEGKPADV-----KRMTAKSASADLSRSKTTSASSVKRNTT 694
Cdd:PRK12323  453 APAAAPAAAARPAAA-----GPRPVAAAAAAAPARAAPAAAPAPADDdpppwEELPPEFASPAPAQPDAAPAGWVAESIP 527

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1907195342 695 PTGAAPPAGMTSTRVKPMSAPSRSSGALSVDKKPTSTKPSSSAPRVS 741
Cdd:PRK12323  528 DPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLP 574
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 463-734 1.13e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 42.61  E-value: 1.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 463 KEIEVTATQSIPSL----LLEETPRDGVSRQEEAKAAVGVTGNDITTPPNKEPPPSPEKKAKPLAT-TQPAKTSTSKAKT 537
Cdd:PLN03209  301 KVVEVIAETTAPLTpmeeLLAKIPSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVvPRPLSPYTAYEDL 380

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 538 QPtslPKQPAPTTSGGLNKKPMSLASGSVPAAPHKRPAAATATARPSTLPARDVKPK--PITEAKVAEKRTSPSKPSSAP 615
Cdd:PLN03209  381 KP---PTSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKtrPLSPYARYEDLKPPTSPSPTA 457

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 616 ALKPGPKTTPTVSKATSPSTLVSTgpSSRSPATTLPKRPTSIKTEGKPADVKRMTAKSASADLSRSKTTS---ASSVKRN 692
Cdd:PLN03209  458 PTGVSPSVSSTSSVPAVPDTAPAT--AATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSStneVVKVGNS 535

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1907195342 693 TTPTGAAPPAGMTSTRVKPMSAPSRSSGAlsvdKKPTSTKPS 734
Cdd:PLN03209  536 APPTALADEQHHAQPKPRPLSPYTMYEDL----KPPTSPTPS 573
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 558-754 1.68e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 42.22  E-value: 1.68e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 558 PMSLASGSVPAAPHKRPAAATATARPSTLP--ARDVKPKPITEAKVAEKRTSPSKPSSAP--ALKPGPKTTPTVSKATSP 633
Cdd:PLN03209  331 KESDAADGPKPVPTKPVTPEAPSPPIEEEPpqPKAVVPRPLSPYTAYEDLKPPTSPIPTPpsSSPASSKSVDAVAKPAEP 410

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 634 STLVSTGPSSRSPATTLPKRPTSIKTEGKP----ADVKRMTAKSASADLSRSKTTSASSVKRNTTPTGAAPPAGMTSTRV 709
Cdd:PLN03209  411 DVVPSPGSASNVPEVEPAQVEAKKTRPLSPyaryEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPP 490

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1907195342 710 KPMSAPSRSSGALSVDKKPTSTKPSSSAPRVSRLATTVSAPDLKS 754
Cdd:PLN03209  491 PANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNS 535
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 527-643 1.97e-03

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 41.64  E-value: 1.97e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 527 PAKTSTSKAKTQPtslpkQPAPTTSGGLNKKPmSLASGSVPAAPHKRPAAATATARPSTlpardvKPKPITEAKVAEKRT 606
Cdd:PHA03269   42 PAPAPHQAASRAP-----DPAVAPTSAASRKP-DLAQAPTPAASEKFDPAPAPHQAASR------APDPAVAPQLAAAPK 109

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1907195342 607 SPSK--PSSAPALKPGPKTTP--TVSKATSPSTLVSTGPSS 643
Cdd:PHA03269  110 PDAAeaFTSAAQAHEAPADAGtsAASKKPDPAAHTQHSPPP 150
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 517-736 3.01e-03

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 41.60  E-value: 3.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 517 KKAKPLATTQPAKTSTSKAKTQPTSLPKQPapttsgglnKKPMSLASGSVPAAPHKrpaaatatarpstlPARDVKPKPI 596
Cdd:PTZ00449  559 KKPGPAKEHKPSKIPTLSKKPEFPKDPKHP---------KDPEEPKKPKRPRSAQR--------------PTRPKSPKLP 615

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 597 TEAKVAEKRTSPSKPSSapalkpgPKTTPTVSKATSPstlvstgpsSRSPATTLPKRPTSIKTEGKPAD--VKRMTAKSA 674
Cdd:PTZ00449  616 ELLDIPKSPKRPESPKS-------PKRPPPPQRPSSP---------ERPEGPKIIKSPKPPKSPKPPFDpkFKEKFYDDY 679

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 675 SADLSRSKTT--------SASSVKRNTTPTGAAPPagMTSTRVKPMSAPSRSSGALSVDKKPTSTKPSSS 736
Cdd:PTZ00449  680 LDAAAKSKETkttvvldeSFESILKETLPETPGTP--FTTPRPLPPKLPRDEEFPFEPIGDPDAEQPDDI 747
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 599-773 3.47e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 41.07  E-value: 3.47e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 599 AKVAEKRTSPSKPSSAPALKPGPkTTPTVSKATSPStlVSTGPSSRSPATTLPKRPTSIKTEGKPADVKRMTAKSASADL 678
Cdd:PLN03209  321 AKIPSQRVPPKESDAADGPKPVP-TKPVTPEAPSPP--IEEEPPQPKAVVPRPLSPYTAYEDLKPPTSPIPTPPSSSPAS 397

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 679 SRSKTTSASSVKRNTTPTGAAPPagmTSTRVKPMSAPSRSSGALSVD------KKPTSTKPSSSAPRVSRLATTVSAPDL 752
Cdd:PLN03209  398 SKSVDAVAKPAEPDVVPSPGSAS---NVPEVEPAQVEAKKTRPLSPYaryedlKPPTSPSPTAPTGVSPSVSSTSSVPAV 474

                         170       180
                  ....*....|....*....|.
gi 1907195342 753 KSVRSKVGSTENIKHQPGGGR 773
Cdd:PLN03209  475 PDTAPATAATDAAAPPPANMR 495
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 547-757 3.51e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 41.31  E-value: 3.51e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342  547 APTTSGGLNKKPMSLASGSVPAAPHKRPAAATATARPSTLPARDVK---PKPITEAKVAEKRTSPSKPSSAPALKPGPKT 623
Cdd:PHA03307    24 PPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTgppPGPGTEAPANESRSTPTWSLSTLAPASPARE 103

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342  624 -TPTVSKATSPSTLVSTGPSSRSPATTLPKRPTSIKTEGKPADVKRMTAKSASADLSRSKTTSASsvkrnttPTGAAPPA 702
Cdd:PHA03307   104 gSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAAS-------SRQAALPL 176

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1907195342  703 GMTSTRVKPMSAPSRSSGalsVDKKPTSTKPSSSAPRVSrLATTVSAPDLKSVRS 757
Cdd:PHA03307   177 SSPEETARAPSSPPAEPP---PSTPPAAASPRPPRRSSP-ISASASSPAPAPGRS 227
PHA03247 PHA03247
large tegument protein UL36; Provisional
 521-748 4.33e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 4.33e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342  521 PLATTQPAKTSTSKAKTQPTSLPKQPAPTTsgGLNKKPMSLASGSVPAAPHKRPAaatatarpstlPARDVKPKPITEAK 600
Cdd:PHA03247  2814 PAAALPPAASPAGPLPPPTSAQPTAPPPPP--GPPPPSLPLGGSVAPGGDVRRRP-----------PSRSPAAKPAAPAR 2880

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342  601 VAEKRTS---PSKPSSAPALKPGPKTTPTVSKATSPSTLVSTGPSSRSPATTLPkrptsikTEGKPADVKRMTAKSASAd 677
Cdd:PHA03247  2881 PPVRRLArpaVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPP-------PPPRPQPPLAPTTDPAGA- 2952

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907195342  678 lsrSKTTSASSVKRNttptGAAPPAGMTSTRVK-PMSAPSRSSGAlsvdkKPTSTKPSSSAPRVSRLATTVS 748
Cdd:PHA03247  2953 ---GEPSGAVPQPWL----GALVPGRVAVPRFRvPQPAPSREAPA-----SSTPPLTGHSLSRVSSWASSLA 3012
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
607-751 8.29e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 39.83  E-value: 8.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907195342 607 SPSKPSSAPAlkPGPKTTPTVSKATSPSTLVSTGPSSRSPAttlPKRPTSIKTEGKPADVKRmTAKSASADLSRSKTTSA 686
Cdd:PRK07003  373 PARVAGAVPA--PGARAAAAVGASAVPAVTAVTGAAGAALA---PKAAAAAAATRAEAPPAA-PAPPATADRGDDAADGD 446

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907195342 687 SSVkRNTTPTGAAPPAGMTSTRVKPMSAPSRSSGALSVDKKPTSTKPSSSAPRVSRLATTVSAPD 751
Cdd:PRK07003  447 APV-PAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDA 510
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 678-754 8.60e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 39.49  E-value: 8.60e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907195342 678 LSRSKTTSASSVKRNTTPTGAAPPAgmTSTRVKPMSAPSRSSGALSVDKKPTSTKPSSSAPRVSRLATTVSAPDLKS 754
Cdd:TIGR00601  74 VSKPKTGTGKVAPPAATPTSAPTPT--PSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSSGSDAAS 148
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH