iroquois-class homeodomain protein IRX-1 isoform X1 [Mus musculus]
Protein Classification
homeodomain and IRO domain-containing protein( domain architecture ID 10209743)
homeodomain and IRO domain-containing protein
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| homeodomain super family | cl00084 | Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ... |
1-23 | 6.04e-07 | ||
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner. The actual alignment was detected with superfamily member pfam05920: Pssm-ID: 469608 Cd Length: 39 Bit Score: 45.20 E-value: 6.04e-07
|
||||||
| IRO | smart00548 | Motif in Iroquois-class homeodomain proteins (only). Unknown function; |
148-165 | 1.73e-03 | ||
Motif in Iroquois-class homeodomain proteins (only). Unknown function; : Pssm-ID: 214716 Cd Length: 18 Bit Score: 35.25 E-value: 1.73e-03
|
||||||
| DNA_pol_phi super family | cl47903 | DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7. ... |
34-96 | 2.36e-03 | ||
DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units. The actual alignment was detected with superfamily member pfam04931: Pssm-ID: 461488 Cd Length: 765 Bit Score: 39.53 E-value: 2.36e-03
|
||||||
| Name | Accession | Description | Interval | E-value | ||
| Homeobox_KN | pfam05920 | Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ... |
1-23 | 6.04e-07 | ||
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified. Pssm-ID: 428673 Cd Length: 39 Bit Score: 45.20 E-value: 6.04e-07
|
||||||
| homeodomain | cd00086 | Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ... |
2-28 | 2.76e-05 | ||
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner. Pssm-ID: 238039 [Multi-domain] Cd Length: 59 Bit Score: 41.07 E-value: 2.76e-05
|
||||||
| HOX | smart00389 | Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ... |
2-25 | 3.09e-04 | ||
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes Pssm-ID: 197696 [Multi-domain] Cd Length: 57 Bit Score: 38.00 E-value: 3.09e-04
|
||||||
| IRO | smart00548 | Motif in Iroquois-class homeodomain proteins (only). Unknown function; |
148-165 | 1.73e-03 | ||
Motif in Iroquois-class homeodomain proteins (only). Unknown function; Pssm-ID: 214716 Cd Length: 18 Bit Score: 35.25 E-value: 1.73e-03
|
||||||
| DNA_pol_phi | pfam04931 | DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7. ... |
34-96 | 2.36e-03 | ||
DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units. Pssm-ID: 461488 Cd Length: 765 Bit Score: 39.53 E-value: 2.36e-03
|
||||||
| Name | Accession | Description | Interval | E-value | ||
| Homeobox_KN | pfam05920 | Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ... |
1-23 | 6.04e-07 | ||
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified. Pssm-ID: 428673 Cd Length: 39 Bit Score: 45.20 E-value: 6.04e-07
|
||||||
| homeodomain | cd00086 | Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ... |
2-28 | 2.76e-05 | ||
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner. Pssm-ID: 238039 [Multi-domain] Cd Length: 59 Bit Score: 41.07 E-value: 2.76e-05
|
||||||
| HOX | smart00389 | Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ... |
2-25 | 3.09e-04 | ||
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes Pssm-ID: 197696 [Multi-domain] Cd Length: 57 Bit Score: 38.00 E-value: 3.09e-04
|
||||||
| IRO | smart00548 | Motif in Iroquois-class homeodomain proteins (only). Unknown function; |
148-165 | 1.73e-03 | ||
Motif in Iroquois-class homeodomain proteins (only). Unknown function; Pssm-ID: 214716 Cd Length: 18 Bit Score: 35.25 E-value: 1.73e-03
|
||||||
| DNA_pol_phi | pfam04931 | DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7. ... |
34-96 | 2.36e-03 | ||
DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units. Pssm-ID: 461488 Cd Length: 765 Bit Score: 39.53 E-value: 2.36e-03
|
||||||
| Blast search parameters | ||||
|
