|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
482-1272 |
1.10e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 86.26 E-value: 1.10e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 482 EQAA--TQLKVQLQEAERRWEEVQSYI---------RKRTAEHEAAQQDLQSKFVAKENEVQSLHskLTDTLVSKQQLEQ 550
Cdd:TIGR02168 162 EEAAgiSKYKERRKETERKLERTRENLdrledilneLERQLKSLERQAEKAERYKELKAELRELE--LALLVLRLEELRE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 551 RLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEKDKQLKQTEDSLANEQD 630
Cdd:TIGR02168 240 ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKE---LYALANEISRLEQQKQILRERLANLER 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 631 HLASKEEELKDVQNMNFLLKAEVQKLQA----LANEQAATAHEVEKMQKSIHVKEDKIRLLEE----------QLQHEVA 696
Cdd:TIGR02168 317 QLEELEAQLEELESKLDELAEELAELEEkleeLKEELESLEAELEELEAELEELESRLEELEEqletlrskvaQLELQIA 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 697 SKMEELKILSEQNKALQSEVQKLQTAVSQQPNKDVVEQMEKCIQEKDEKLRTVEEL---LETGLIQVATREEELSAIRTE 773
Cdd:TIGR02168 397 SLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELqeeLERLEEALEELREELEEAEQA 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 774 NSTLTREVQELKAK----QSDQVSFVSLIEDLKRVIHEKDGqiKSVEELLEVELLKVANK-----------------EKT 832
Cdd:TIGR02168 477 LDAAERELAQLQARldslERLQENLEGFSEGVKALLKNQSG--LSGILGVLSELISVDEGyeaaieaalggrlqavvVEN 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 833 VQALKQEIEVLKEE------------IGNAQLEKAHQLSVTSQVQELQNLLRGKEEQ----------------VNSMKAA 884
Cdd:TIGR02168 555 LNAAKKAIAFLKQNelgrvtflpldsIKGTEIQGNDREILKNIEGFLGVAKDLVKFDpklrkalsyllggvlvVDDLDNA 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 885 LEDRdRDLRGRGTC---------AQVCSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQ 955
Cdd:TIGR02168 635 LELA-KKLRPGYRIvtldgdlvrPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEE 713
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 956 LshqkhqqasfpsqEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKNWEAMEALASTEKMLQdrvnktskE 1035
Cdd:TIGR02168 714 L-------------EQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE--------E 772
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1036 RRQHVEAIELESKDLLKRLfptvsvpsnlnysewlrgfekkakacvagTSDAEAVKVLEHRLKEASEMHTLLQLECEKYK 1115
Cdd:TIGR02168 773 AEEELAEAEAEIEELEAQI-----------------------------EQLKEELKALREALDELRAELTLLNEEAANLR 823
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1116 SVLAETEGILQKLQRSVEQEESKWKIKADESQRMIKQMQSSFTASERELERLRQENKDMENLRREREHLEMELEKAEMER 1195
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEEL 903
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907099743 1196 STYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHS-KLQNEQTERKKVADDLHKAQQSLNSIHSKI 1272
Cdd:TIGR02168 904 RELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSlTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
448-993 |
1.69e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.83 E-value: 1.69e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 448 AELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAK 527
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 528 ENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEEL 607
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 608 HKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLL 687
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 688 EEQLQHEVASKMEELKILSEQNKALQSEVQKLQTAVSQQPNKDVVEQMEKCIQEKDEkLRTVEELLETgLIQVATREEEL 767
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAV-LIGVEAAYEA-ALEAALAAALQ 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 768 SAIRTENSTLTREVQELKAKQSDQVSFVSLIEDLKRVIHEKD---GQIKSVEELLEVELLKVANKEKTVQALKQEIEVLK 844
Cdd:COG1196 550 NIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAAlarGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVA 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 845 EEIGNAQ-LEKAHQLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQVCSTPQFEELESVLKEKDNEIKR 923
Cdd:COG1196 630 ARLEAALrRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEEREL 709
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 924 IEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQASFPSQEELQTVISEKEKEITDLCNELESL 993
Cdd:COG1196 710 AEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
335-1030 |
1.27e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.78 E-value: 1.27e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 335 QLQEKERLLSAMKEDAAASKERCKQLTQEMMTEKERSSvviarmKDRIGTLEKEHNIFQNKMHASYQETQQMQMKFQQVQ 414
Cdd:TIGR02168 221 ELRELELALLVLRLEELREELEELQEELKEAEEELEEL------TAELQELEEKLEELRLEVSELEEEIEELQKELYALA 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 415 eqmeAEIAHLKQENGILRDAVSNTTNQLESKqSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQE 494
Cdd:TIGR02168 295 ----NEISRLEQQKQILRERLANLERQLEEL-EAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 495 AERRWEEVQSYIRKRTAEHEAAQQDLQSKfvakENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEesLQIQVQ 574
Cdd:TIGR02168 370 LESRLEELEEQLETLRSKVAQLELQIASL----NNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE--LQAELE 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 575 DILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQ 654
Cdd:TIGR02168 444 ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILG 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 655 KLQALAN-----EQAATAHEVEKMQKSIHVKEDKIRLLEEQL------------------QHEVASKMEEL--------- 702
Cdd:TIGR02168 524 VLSELISvdegyEAAIEAALGGRLQAVVVENLNAAKKAIAFLkqnelgrvtflpldsikgTEIQGNDREILkniegflgv 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 703 -----KILSEQNKALQSE------VQKLQTAVSQQPNKDV---------------------VEQMEKCIQEKDEKLRTVE 750
Cdd:TIGR02168 604 akdlvKFDPKLRKALSYLlggvlvVDDLDNALELAKKLRPgyrivtldgdlvrpggvitggSAKTNSSILERRREIEELE 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 751 ELLETGLIQVATREEELSAIRTENSTLTREVQELKAkqsdqvsfvsLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKE 830
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRK----------ELEELSRQISALRKDLARLEAEVEQLEERIAQLS 753
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 831 KTVQALKQEIEVLKEEIGNAQLEKAHQLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQVcstpQFEEL 910
Cdd:TIGR02168 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE----RLESL 829
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 911 ESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQASfpSQEELQTVISEKEKEITDLcNEL 990
Cdd:TIGR02168 830 ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAS--LEEALALLRSELEELSEEL-REL 906
|
730 740 750 760
....*....|....*....|....*....|....*....|
gi 1907099743 991 ESLKNAVEHQRKKNNDLREKNWEAMEALASTEKMLQDRVN 1030
Cdd:TIGR02168 907 ESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS 946
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
460-791 |
1.38e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.20 E-value: 1.38e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 460 LVSELNEKTGKLQQEgvqkknAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQskfvAKENEVQSLHSKLT 539
Cdd:COG1196 194 ILGELERQLEPLERQ------AEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELE----ELEAELEELEAELA 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 540 DTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEKDKQLK 619
Cdd:COG1196 264 ELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEE---LAELEEELEELEEELE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 620 QTEDSLANEQDHLASKEEELKDVQNmnfLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVASKM 699
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEAEE---ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 700 EELKILSEQNKALQSEVQKLQTAVSQQpnkdvveqmekciQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTR 779
Cdd:COG1196 418 RLEEELEELEEALAELEEEEEEEEEAL-------------EEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLE 484
|
330
....*....|..
gi 1907099743 780 EVQELKAKQSDQ 791
Cdd:COG1196 485 ELAEAAARLLLL 496
|
|
| Rib_recp_KP_reg |
pfam05104 |
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
29-151 |
1.88e-10 |
|
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.
Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 60.14 E-value: 1.88e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 29 MKETLYDEVLAKQKREQKLISTKTDKKKAEKKKNKKK------EIQNGTLRESD----SEHVPRDFKLSDASPAEDEqfV 98
Cdd:pfam05104 1 MKETSYEEALAKQRRELKKTPTEKEKKKKEKKKEKKKkskkkeEKPNGKLPESEqadeSEEEPREFKTPDEAPSAAL--E 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1907099743 99 PAPLNVAETSSSVRERKKKEKKQKPSLEEQVIKESDASKIPGKKVEPVLVTKQ 151
Cdd:pfam05104 79 PEPVPTPVPAPVEPEPAPPSESPAPSPKEKKKKEKKSAKVEPAETPEAVQPKP 131
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
310-966 |
6.96e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 6.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 310 LKEKSGVIKEALKKSNKgELSGLLHQLQEKERLLSAMKEDAAASKERCKQLTQEMMTEKER---SSVVIARMKDRIGTLE 386
Cdd:TIGR02168 300 LEQQKQILRERLANLER-QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEleeLEAELEELESRLEELE 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 387 KEHNIFQNKMHASYQETQQMQMKfqqvQEQMEAEIAHLKQENGILRdavSNTTNQLESKQSAELNKLRQDCGRLVSELNE 466
Cdd:TIGR02168 379 EQLETLRSKVAQLELQIASLNNE----IERLEARLERLEDRRERLQ---QEIEELLKKLEEAELKELQAELEELEEELEE 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 467 KTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSyirkRTAEHEAAQQDLQSKFVAKENEVQSLhSKLTDTLvskq 546
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQA----RLDSLERLQENLEGFSEGVKALLKNQ-SGLSGIL---- 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 547 qleQRLMQLMESEQK-RASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSA-SVLAEELHKVIAEKDKQLKQTEDS 624
Cdd:TIGR02168 523 ---GVLSELISVDEGyEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTfLPLDSIKGTEIQGNDREILKNIEG 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 625 LANEQDHLASKEEELKDVqnMNFLLK--AEVQKLQALANEQAATAH---------EVEKMQKSIHVKEDKIRLLEEQLQH 693
Cdd:TIGR02168 600 FLGVAKDLVKFDPKLRKA--LSYLLGgvLVVDDLDNALELAKKLRPgyrivtldgDLVRPGGVITGGSAKTNSSILERRR 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 694 EVASKMEELKILSEQNKALQSEVQKLQTAVSQQpnKDVVEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTE 773
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEEL--EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 774 NSTLTREVQELKAKqsdqvsfvslIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLE 853
Cdd:TIGR02168 756 LTELEAEIEELEER----------LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRER 825
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 854 KAHQL----SVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLrgrgtcaqvcstpqfEELESVLKEKDNEIKRIEVKLK 929
Cdd:TIGR02168 826 LESLErriaATERRLEDLEEQIEELSEDIESLAAEIEELEELI---------------EELESELEALLNERASLEEALA 890
|
650 660 670
....*....|....*....|....*....|....*..
gi 1907099743 930 DTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQASF 966
Cdd:TIGR02168 891 LLRSELEELSEELRELESKRSELRRELEELREKLAQL 927
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
478-1054 |
1.27e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.24 E-value: 1.27e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 478 KKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSkltdtlvSKQQLEQRLMQLME 557
Cdd:PTZ00121 1236 KKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADE-------AKKAEEKKKADEAK 1308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 558 SEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEE 637
Cdd:PTZ00121 1309 KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE 1388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 638 ELKDVQNmnflLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKALQSEVQ 717
Cdd:PTZ00121 1389 EKKKADE----AKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKK 1464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 718 KLQTAVSQQPNKDVVEQMEKCiqekDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQEL-KAKQSDQVSFVS 796
Cdd:PTZ00121 1465 KAEEAKKADEAKKKAEEAKKA----DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAkKAEEAKKADEAK 1540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 797 LIEDLKRVIH-EKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLEKAHQLSVTSQVQELqnllrgKE 875
Cdd:PTZ00121 1541 KAEEKKKADElKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA------KK 1614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 876 EQVNSMKAALEDRDRDLRGRGTCAQVCSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKflKCQ 955
Cdd:PTZ00121 1615 AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK--AAE 1692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 956 LSHQKHQQASfpSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKNWEAMEALASTEKM--LQDRVNKTS 1033
Cdd:PTZ00121 1693 ALKKEAEEAK--KAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIahLKKEEEKKA 1770
|
570 580
....*....|....*....|....
gi 1907099743 1034 KERRQHVEAI---ELESKDLLKRL 1054
Cdd:PTZ00121 1771 EEIRKEKEAVieeELDEEDEKRRM 1794
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
610-1217 |
1.58e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.65 E-value: 1.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 610 VIAEKDKQLKqtedSLANEqdhlASKEEELKDVQNmnfllKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEE 689
Cdd:COG1196 194 ILGELERQLE----PLERQ----AEKAERYRELKE-----ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 690 QLQH---EVASKMEELKILSEQNKALQSEVQKLQTAVSQQpNKDVVEQMEKCIQEKDEKLRTVEELLETgLIQVATREEE 766
Cdd:COG1196 261 ELAEleaELEELRLELEELELELEEAQAEEYELLAELARL-EQDIARLEERRRELEERLEELEEELAEL-EEELEELEEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 767 LSAIRTENSTLTREVQELKAKQSDQVSfvsLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEE 846
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEE---ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 847 IGNAQLEKAHQLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQVcstpQFEELESVLKEKDNEIKRIEV 926
Cdd:COG1196 416 LERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE----EAALLEAALAELLEELAEAAA 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 927 KLKDTESDVSKMSELLKEVQE-ENKFLKCQLSHQKHQQASFPSQEELQTVISEKEKEITDLCNELESLKNAVEHqrkknn 1005
Cdd:COG1196 492 RLLLLLEAEADYEGFLEGVKAaLLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEY------ 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1006 dLREKNWEAMEALAStEKMLQDRVNKTSKERRQHVEAIELESKDLLKRLFPTVSVPSNLNYSEWLRGFEKKAKACVAGTS 1085
Cdd:COG1196 566 -LKAAKAGRATFLPL-DKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLA 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1086 DAEAVKVLEHRLKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKIKADESQRMIKQMQSSFTASERELE 1165
Cdd:COG1196 644 GRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEE 723
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 1907099743 1166 RLRQENKDMENLRREREHLEME--LEKAEMERSTYVMEVRELKDLLTELQKKLD 1217
Cdd:COG1196 724 EALEEQLEAEREELLEELLEEEelLEEEALEELPEPPDLEELERELERLEREIE 777
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
328-872 |
1.58e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.65 E-value: 1.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 328 ELSGLLHQLQEKERLLSAMKEDAAASKERCKQLTQEMMTEKERssvvIARMKDRIGTLEKEHnifqnkmhasyQETQQMQ 407
Cdd:COG1196 268 ELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER----RRELEERLEELEEEL-----------AELEEEL 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 408 MKFQQVQEQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQdcgrlvselnektgkLQQEGVQKKNAEQAATQ 487
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE---------------LEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 488 LKVQLQEAERRWEEvqsyIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEE 567
Cdd:COG1196 398 LAAQLEELEEAEEA----LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 568 SLQIQVQDILEQNEALKAQIQQFHSQIA--AQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEE-LKDVQN 644
Cdd:COG1196 474 LLEAALAELLEELAEAAARLLLLLEAEAdyEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAaLQNIVV 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 645 MNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVASkmeELKILSEQNKALQSEVqkLQTAVS 724
Cdd:COG1196 554 EDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVAS---DLREADARYYVLGDTL--LGRTLV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 725 QQPNKDVVEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQELKAKQSDQVSFVSLIEDLKRV 804
Cdd:COG1196 629 AARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE 708
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907099743 805 IHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLEKAhqLSVTSQVQELQNLLR 872
Cdd:COG1196 709 LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEP--PDLEELERELERLER 774
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
418-1011 |
2.42e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.96 E-value: 2.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 418 EAEIAHLKQENGILRDAVSNTTNQLeSKQSAELNKLRQDCGRLVSELNEKTGklqqegvQKKNAEQAATQLKVQLQEAER 497
Cdd:TIGR04523 67 EEKINNSNNKIKILEQQIKDLNDKL-KKNKDKINKLNSDLSKINSEIKNDKE-------QKNKLEVELNKLEKQKKENKK 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 498 RWEEVQSYIRKRTAEHEaaqqDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQ----------RLMQLMESEQKRASKEE 567
Cdd:TIGR04523 139 NIDKFLTEIKKKEKELE----KLNNKYNDLKKQKEELENELNLLEKEKLNIQKnidkiknkllKLELLLSNLKKKIQKNK 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 568 SLQIQVQDILEQNEALKAQIQQFHSQIaaqtsasvlaEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNF 647
Cdd:TIGR04523 215 SLESQISELKKQNNQLKDNIEKKQQEI----------NEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIK 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 648 LLKAEVQKLQA----LANEQAATAHEVEKMQksIHVKEDKIRLLEEQL---QHEVASKMEELKILSEQNKALQSEVQKLQ 720
Cdd:TIGR04523 285 ELEKQLNQLKSeisdLNNQKEQDWNKELKSE--LKNQEKKLEEIQNQIsqnNKIISQLNEQISQLKKELTNSESENSEKQ 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 721 TAVSQQPNkdvveQMEKCIQEKDEKLRTVEELLetglIQVATREEELSAIRTENSTLTrevQELKAKQSDQVSFVSLIED 800
Cdd:TIGR04523 363 RELEEKQN-----EIEKLKKENQSYKQEIKNLE----SQINDLESKIQNQEKLNQQKD---EQIKKLQQEKELLEKEIER 430
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 801 LKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLE-KAHQLSVTSQVQELQNLlrgkeeqvN 879
Cdd:TIGR04523 431 LKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNlEQKQKELKSKEKELKKL--------N 502
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 880 SMKAALEDRDRDLRGRgtcaQVCSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKmSELLKEVQEENKflkcQLSHQ 959
Cdd:TIGR04523 503 EEKKELEEKVKDLTKK----ISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKK-ENLEKEIDEKNK----EIEEL 573
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 1907099743 960 KHQQASF-PSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKN 1011
Cdd:TIGR04523 574 KQTQKSLkKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKEN 626
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
377-1029 |
8.20e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 60.52 E-value: 8.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 377 RMKDRIGTLEKEHNIFQNKMHASYQETQQMQMKFQQVQEQMEAEIAHLKQENGI---LRDAVSNTTNQLESKQ------- 446
Cdd:pfam15921 86 QVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSqedLRNQLQNTVHELEAAKclkedml 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 447 ---SAELNKLR----------QDCGRLVSELNEKTGKLQQEgvQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEH 513
Cdd:pfam15921 166 edsNTQIEQLRkmmlshegvlQEIRSILVDFEEASGKKIYE--HDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPV 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 514 EAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEqrLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQ 593
Cdd:pfam15921 244 EDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVE--ITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSD 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 594 IaaQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKM 673
Cdd:pfam15921 322 L--ESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQ 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 674 QKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKALQSEVQ---KLQTAVSQQPNKDV-------------VEQMEK 737
Cdd:pfam15921 400 NKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQgqmERQMAAIQGKNESLekvssltaqlestKEMLRK 479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 738 CIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTR----------EVQELKAKQSDQVSFVSLIEDLKRVIHE 807
Cdd:pfam15921 480 VVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKlrsrvdlklqELQHLKNEGDHLRNVQTECEALKLQMAE 559
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 808 KDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLE----KAHQLSVTSQVQELQ-----------NLLR 872
Cdd:pfam15921 560 KDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLElqefKILKDKKDAKIRELEarvsdlelekvKLVN 639
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 873 GKEEQVNSMKAALEDRDRDLRGRGTCAQVCS--TPQFEELESVLKEKDNEIK----RIEVKLKDTESDVSKMSELLKEVQ 946
Cdd:pfam15921 640 AGSERLRAVKDIKQERDQLLNEVKTSRNELNslSEDYEVLKRNFRNKSEEMEtttnKLKMQLKSAQSELEQTRNTLKSME 719
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 947 -EENKFLKCQLSHQKHQQASFPSQEELQTVISEKEKEITDLCNELESLKnavEHQRKKNNDLR----EKNWEA--MEALA 1019
Cdd:pfam15921 720 gSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLK---EEKNKLSQELStvatEKNKMAgeLEVLR 796
|
730
....*....|
gi 1907099743 1020 STEKMLQDRV 1029
Cdd:pfam15921 797 SQERRLKEKV 806
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
460-1216 |
1.14e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.70 E-value: 1.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 460 LVSELNEKTGKLQQEgvqkKNAEQAATQLKVQLQEAErrweevQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLT 539
Cdd:TIGR02169 192 IIDEKRQQLERLRRE----REKAERYQALLKEKREYE------GYELLKEKEALERQKEAIERQLASLEEELEKLTEEIS 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 540 DTLVSKQQLEQRLMQLmESEQKRASKEESLQIQvqdilEQNEALKAQIQQFHSQIAA-QTSASVLAEELHKVIAEKDKQL 618
Cdd:TIGR02169 262 ELEKRLEEIEQLLEEL-NKKIKDLGEEEQLRVK-----EKIGELEAEIASLERSIAEkERELEDAEERLAKLEAEIDKLL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 619 KQTEDSlaneqdhlaskEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVASK 698
Cdd:TIGR02169 336 AEIEEL-----------EREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINEL 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 699 MEELKILSEQNKALQSEV----QKLQTAVSQQPN-KDVVEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTE 773
Cdd:TIGR02169 405 KRELDRLQEELQRLSEELadlnAAIAGIEAKINElEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 774 NSTLTREVQELKAKQS-------DQVSFVSLIEDLKRVIHEKDGQ-IKSVEELLEVELLKVANKEKTV-----QALKQEI 840
Cdd:TIGR02169 485 LSKLQRELAEAEAQARaseervrGGRAVEEVLKASIQGVHGTVAQlGSVGERYATAIEVAAGNRLNNVvveddAVAKEAI 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 841 EVLKEEignaQLEKAHQLSVTSQVQELQNLLRGKEEQVnsMKAALEDRDRDLRGRGTCAQVC-STPQFEELESV------ 913
Cdd:TIGR02169 565 ELLKRR----KAGRATFLPLNKMRDERRDLSILSEDGV--IGFAVDLVEFDPKYEPAFKYVFgDTLVVEDIEAArrlmgk 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 914 ---------LKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQASFPSQ-EELQTVISEKEKEI 983
Cdd:TIGR02169 639 yrmvtlegeLFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRlDELSQELSDASRKI 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 984 TDLCNELESLKNAVEHQRKKNNDLREKNWEAMEALASTEKMLQDrVNKTSKERRQHVEAIELESKDLLKRLfptvsvpsn 1063
Cdd:TIGR02169 719 GEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKE-LEARIEELEEDLHKLEEALNDLEARL--------- 788
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1064 lnysewlrgfekkakacvagtsdaeavkvLEHRLKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESK----- 1138
Cdd:TIGR02169 789 -----------------------------SHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEiqelq 839
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1139 -----WKIKADESQRMIKQMQSSFTASERELERLRQENKDME----NLRREREHLEMELEKAEMERSTYVMEVRELKDLL 1209
Cdd:TIGR02169 840 eqridLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLEsrlgDLKKERDELEAQLRELERKIEELEAQIEKKRKRL 919
|
....*..
gi 1907099743 1210 TELQKKL 1216
Cdd:TIGR02169 920 SELKAKL 926
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
337-1042 |
2.58e-08 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 58.90 E-value: 2.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 337 QEKERLLSAMKEDAAASKERCKQLTQEMMTEKERSSVVIARMKDRIGTLEKEHNIFQNKMHASYQETQQMQMKFQQVQEQ 416
Cdd:TIGR00606 283 KDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEH 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 417 MEA------EIAHLKQENGILRDA-----VSNTTNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAA 485
Cdd:TIGR00606 363 IRArdsliqSLATRLELDGFERGPfserqIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTI 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 486 TQLKVQLQEAERRWEEVQSYIRK---------------RTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQ 550
Cdd:TIGR00606 443 ELKKEILEKKQEELKFVIKELQQlegssdrileldqelRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQ 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 551 RLMQLMESEQKRASKEeslqIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQD 630
Cdd:TIGR00606 523 EMEQLNHHTTTRTQME----MLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNK 598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 631 HLASKEEELKDVQNMNFLLKAEVQKL----------QALANEQAATAHEVEKMQKSIHVKEDKIRLLE---EQLQHEVAS 697
Cdd:TIGR00606 599 ELASLEQNKNHINNELESKEEQLSSYedklfdvcgsQDEESDLERLKEEIEKSSKQRAMLAGATAVYSqfiTQLTDENQS 678
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 698 KMEELKILSEQNKALQSEVQKLQTAVSQQPNKdvVEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTL 777
Cdd:TIGR00606 679 CCPVCQRVFQTEAELQEFISDLQSKLRLAPDK--LKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKV 756
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 778 TREVQELK---AKQSDQVSFVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVlkEEIGNAQLEK 854
Cdd:TIGR00606 757 NRDIQRLKndiEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTV--QQVNQEKQEK 834
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 855 AHQL-SVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQvcstpQFEELESVLKEKDNEIKRIEVKLKDTES 933
Cdd:TIGR00606 835 QHELdTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQ-----RRQQFEEQLVELSTEVQSLIREIKDAKE 909
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 934 DVSKMSELLKEVQEENKflkcQLSHQKHQqasfpSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKNWE 1013
Cdd:TIGR00606 910 QDSPLETFLEKDQQEKE----ELISSKET-----SNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELN 980
|
730 740
....*....|....*....|....*....
gi 1907099743 1014 AMEALASTEKMLQDRVNKTSKERRQHVEA 1042
Cdd:TIGR00606 981 TVNAQLEECEKHQEKINEDMRLMRQDIDT 1009
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
369-1202 |
4.85e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.77 E-value: 4.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 369 ERSSVVIARMKDRIGTLEKEHNifqnkmHA-SYQETQQmqmkfqqvqEQMEAEIAHLKQENGILRDAVSNTTNQLESKQ- 446
Cdd:TIGR02169 187 ERLDLIIDEKRQQLERLRRERE------KAeRYQALLK---------EKREYEGYELLKEKEALERQKEAIERQLASLEe 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 447 -----SAELNKLRQDCGRLVSELNEKTGKLQQEG------VQKK---------NAEQAATQLKVQLQEAERRWEEVQSYI 506
Cdd:TIGR02169 252 eleklTEEISELEKRLEEIEQLLEELNKKIKDLGeeeqlrVKEKigeleaeiaSLERSIAEKERELEDAEERLAKLEAEI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 507 RKRTAEHEAAQQDLQSKFVAKE---NEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEAL 583
Cdd:TIGR02169 332 DKLLAEIEELEREIEEERKRRDkltEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRL 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 584 KAQIQQFHSQIAaqtsasvlaeELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMnflLKAEVQKLQALANEQ 663
Cdd:TIGR02169 412 QEELQRLSEELA----------DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD---LSKYEQELYDLKEEY 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 664 AATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVASKMeelkILSEQNKALQSEVQKL-----------QTAVSQQPNKDVV 732
Cdd:TIGR02169 479 DRVEKELSKLQRELAEAEAQARASEERVRGGRAVEE----VLKASIQGVHGTVAQLgsvgeryataiEVAAGNRLNNVVV 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 733 EQ---MEKCIQ-EKDEKL---------------RTVEELLETGLIQVAT------REEELSAIRTENSTLTREVQELKAK 787
Cdd:TIGR02169 555 EDdavAKEAIElLKRRKAgratflplnkmrderRDLSILSEDGVIGFAVdlvefdPKYEPAFKYVFGDTLVVEDIEAARR 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 788 QSDQVSFVSLIEDLkrviHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLEKAHQLSVTSQVQEL 867
Cdd:TIGR02169 635 LMGKYRMVTLEGEL----FEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 868 QNLLRGKEEQVNSMKAALEDRDRDLRGRgtcaqvcstpqFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQE 947
Cdd:TIGR02169 711 LSDASRKIGEIEKEIEQLEQEEEKLKER-----------LEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEE 779
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 948 ENKFLKCQLSHQKHQQASfPSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKNWEAMEALASTEKMLQD 1027
Cdd:TIGR02169 780 ALNDLEARLSHSRIPEIQ-AELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN 858
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1028 rVNKTSKERRQHVEAIELESKDLLKRLfptvsvpsnLNYSEWLRGFEKKAKACVAGTSDAEA-VKVLEHRLKEasemhtl 1106
Cdd:TIGR02169 859 -LNGKKEELEEELEELEAALRDLESRL---------GDLKKERDELEAQLRELERKIEELEAqIEKKRKRLSE------- 921
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1107 LQLECEKYKSVLAETEGILQKLQRSVEQEESKWKIKAdESQRMIKQMQS-------SFTASERELERLRQENKDMENLRR 1179
Cdd:TIGR02169 922 LKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQA-ELQRVEEEIRAlepvnmlAIQEYEEVLKRLDELKEKRAKLEE 1000
|
890 900
....*....|....*....|...
gi 1907099743 1180 EREHLEMELEKAEMERSTYVMEV 1202
Cdd:TIGR02169 1001 ERKAILERIEEYEKKKREVFMEA 1023
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
482-1027 |
4.91e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.77 E-value: 4.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 482 EQAATQLKVQLQEAERRWEEVQSYIrKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQK 561
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFI-KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 562 RASKE----------ESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLK---QTEDSLANE 628
Cdd:PRK03918 240 IEELEkeleslegskRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDelrEIEKRLSRL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 629 QDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQ 708
Cdd:PRK03918 320 EEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 709 NKALQSEVQKLQTAVSQQPN-----KDVVEQMEK-------CIQEKDEKLRtvEELLETGLIQVATREEELSAIRTENST 776
Cdd:PRK03918 400 KEEIEEEISKITARIGELKKeikelKKAIEELKKakgkcpvCGRELTEEHR--KELLEEYTAELKRIEKELKEIEEKERK 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 777 LTREVQELKAKQSDQVSFVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIgnaqlekah 856
Cdd:PRK03918 478 LRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKEL--------- 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 857 qlsvtSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQVCSTPQFEELESV------LKEKDNEIKRIEVKLKD 930
Cdd:PRK03918 549 -----EKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFyneyleLKDAEKELEREEKELKK 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 931 TESDVSKMSELLKEVQEENKFLKCQLShQKHQQASFPSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLR-- 1008
Cdd:PRK03918 624 LEEELDKAFEELAETEKRLEELRKELE-ELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKee 702
|
570 580
....*....|....*....|
gi 1907099743 1009 -EKNWEAMEALASTEKMLQD 1027
Cdd:PRK03918 703 lEEREKAKKELEKLEKALER 722
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
386-1322 |
5.62e-08 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 57.75 E-value: 5.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 386 EKEHNIFQNKMHASYQET-QQMQMKFQQVQEQMEAEIAHLKQENGI---LRDAVSNTTNQLESKQ------SAELNKLRQ 455
Cdd:TIGR00606 173 QKFDEIFSATRYIKALETlRQVRQTQGQKVQEHQMELKYLKQYKEKaceIRDQITSKEAQLESSReivksyENELDPLKN 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 456 DCGRlVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQE--------AERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAK 527
Cdd:TIGR00606 253 RLKE-IEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELkmekvfqgTDEQLNDLYHNHQRTVREKERELVDCQRELEKL 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 528 ENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQ-DILEQNEALKAQIQQFHSQIAAQTS-----AS 601
Cdd:TIGR00606 332 NKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLElDGFERGPFSERQIKNFHTLVIERQEdeaktAA 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 602 VLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHvKE 681
Cdd:TIGR00606 412 QLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELS-KA 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 682 DKIRLLEEQLQHEVASKMEELKILSEQNKALQSEVQKlqtavsqQPNKDVVEQMEKCIQEKDEKLRTVEELLETGLIQVA 761
Cdd:TIGR00606 491 EKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQL-------NHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELT 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 762 TREEELSAIRTENSTLTREVQELKAKQSDQVSFVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTvQALKQEIE 841
Cdd:TIGR00606 564 SLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGS-QDEESDLE 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 842 VLKEEIGNAQLEKAhqlsvtsqvqelqnLLRGKEEQVNSMKAALEDRDRdlrgrgTCAQVCST--PQFEELESVLKEKDN 919
Cdd:TIGR00606 643 RLKEEIEKSSKQRA--------------MLAGATAVYSQFITQLTDENQ------SCCPVCQRvfQTEAELQEFISDLQS 702
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 920 EIKRIEVKLKDTESDVSKMsellkevqeenkflkcqlshQKHQQASFPSQEELQTVISEKEKEITDLCNELESLKNavEH 999
Cdd:TIGR00606 703 KLRLAPDKLKSTESELKKK--------------------EKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNR--DI 760
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1000 QRKKNNdlREKNWEAMEALASTEKMLQDRVNKTSKERRQHVEAIELESKdLLKRLFPTVSVPSNLNYSEWLRGFEKKAKA 1079
Cdd:TIGR00606 761 QRLKND--IEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERK-IAQQAAKLQGSDLDRTVQQVNQEKQEKQHE 837
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1080 CVAGTSDAEAVKVLehrLKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKiKADESQRMIKQMQSSFTA 1159
Cdd:TIGR00606 838 LDTVVSKIELNRKL---IQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELST-EVQSLIREIKDAKEQDSP 913
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1160 SERELERLRQENKDMENLRRErehlemELEKAEMERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEelnllkTQLNE 1239
Cdd:TIGR00606 914 LETFLEKDQQEKEELISSKET------SNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKE------TELNT 981
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1240 THSKLQNEQTERKKVADDLHKAQQSLNSIHSKISLKAAGDTVVIENSDISPEMESPEKETMSVSLNQtVTQLQQLLQEVN 1319
Cdd:TIGR00606 982 VNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQ-VLQMKQEHQKLE 1060
|
...
gi 1907099743 1320 QQL 1322
Cdd:TIGR00606 1061 ENI 1063
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
506-784 |
8.94e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 8.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 506 IRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKA 585
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 586 QIQQFHSQIAaqtSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKD-----------VQNMNFLLKAEVQ 654
Cdd:TIGR02168 762 EIEELEERLE---EAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLlneeaanlrerLESLERRIAATER 838
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 655 KLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQH-----------------EVASKMEELKILSEQNKALQSEVQ 717
Cdd:TIGR02168 839 RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAllnerasleealallrsELEELSEELRELESKRSELRRELE 918
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907099743 718 KLQTAVSQQPNKdvVEQMEKCIQEKDEKLRTVEEL-LETGLIQVATREEELSAIRTENSTLTREVQEL 784
Cdd:TIGR02168 919 ELREKLAQLELR--LEGLEVRIDNLQERLSEEYSLtLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
311-1064 |
6.63e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 6.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 311 KEKSGVIKEALKKSNKGELSGLLHQLQEKERLLSAMKEDAAASKERCKQLT---QEMMTEKERSSVVIARMKDRIGTL-E 386
Cdd:TIGR02169 207 REKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTeeiSELEKRLEEIEQLLEELNKKIKDLgE 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 387 KEHNIFQNKM---HASYQETQQMQMKFQQVQEQMEAEIAHLKQENGILRDAVSNTTNQLESKQsAELNKLRQDCGRLVSE 463
Cdd:TIGR02169 287 EEQLRVKEKIgelEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEER-KRRDKLTEEYAELKEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 464 LNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKrtaeheaaqqdLQSKFVAKENEVQSLHSKLTDTLV 543
Cdd:TIGR02169 366 LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDR-----------LQEELQRLSEELADLNAAIAGIEA 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 544 SKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIaaqtsasvlaEELHKVIAEKDKQLKQTED 623
Cdd:TIGR02169 435 KINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKEL----------SKLQRELAEAEAQARASEE 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 624 slanEQDHLASKEEELKDVQNMNFLLKAE---VQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQ-------- 692
Cdd:TIGR02169 505 ----RVRGGRAVEEVLKASIQGVHGTVAQlgsVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAgratflpl 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 693 HEVASKMEELKILSEqNKALQSEV------QKLQTAVSQQ-PNKDVVEQMEKCIQEKDE-KLRTVE-ELLE--------- 754
Cdd:TIGR02169 581 NKMRDERRDLSILSE-DGVIGFAVdlvefdPKYEPAFKYVfGDTLVVEDIEAARRLMGKyRMVTLEgELFEksgamtggs 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 755 ---TGLIQVATRE-EELSAIRTENSTLTREVQELKAKQSDQVSFV----SLIEDLKRVIHEKDGQIKSVEELLEVELLKV 826
Cdd:TIGR02169 660 rapRGGILFSRSEpAELQRLRERLEGLKRELSSLQSELRRIENRLdelsQELSDASRKIGEIEKEIEQLEQEEEKLKERL 739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 827 ANKEKTVQALKQEIEVLKEEIgnaqlekahqlsvtsqvQELQNLLRGKEEQVNSMKAALEDRDRDLRGRgtcaqvcstpQ 906
Cdd:TIGR02169 740 EELEEDLSSLEQEIENVKSEL-----------------KELEARIEELEEDLHKLEEALNDLEARLSHS----------R 792
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 907 FEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQASFPSQ--------EELQTVISE 978
Cdd:TIGR02169 793 IPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEienlngkkEELEEELEE 872
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 979 KEKEITDLCNELESLKNAVEHQRKKNNDLREKNWEAMEALastekmlqDRVNKTSKERRQHVEAIELESKDLLKRLFPTV 1058
Cdd:TIGR02169 873 LEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQI--------EKKRKRLSELKAKLEALEEELSEIEDPKGEDE 944
|
....*.
gi 1907099743 1059 SVPSNL 1064
Cdd:TIGR02169 945 EIPEEE 950
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
308-800 |
7.97e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.49 E-value: 7.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 308 DLLKEKSGVIKEALKKSNKgeLSGLLHQLQEKERLLSAMKedaaASKERCKQLTQEMMTEKERSSVviarMKDRIGTLEK 387
Cdd:TIGR04523 170 ELENELNLLEKEKLNIQKN--IDKIKNKLLKLELLLSNLK----KKIQKNKSLESQISELKKQNNQ----LKDNIEKKQQ 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 388 EHNIFQNKMHASYQETQQMQMKFQQVQEQMEAEIAHLKQENGILRDaVSNTTNQLESKQSAELNKLRQDCGRLV-SELNE 466
Cdd:TIGR04523 240 EINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKE-LEKQLNQLKSEISDLNNQKEQDWNKELkSELKN 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 467 KTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKfvakENEVQSLHSKLTDTLVSKQ 546
Cdd:TIGR04523 319 QEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKL----KKENQSYKQEIKNLESQIN 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 547 QLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIA----AQTSASVLAEELHKVIAEKDKQLKQTE 622
Cdd:TIGR04523 395 DLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKdltnQDSVKELIIKNLDNTRESLETQLKVLS 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 623 DSLANEQDHLASKEEELKDVQNMNFLLKAEV----QKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEqlqhEVASK 698
Cdd:TIGR04523 475 RSINKIKQNLEQKQKELKSKEKELKKLNEEKkeleEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLED----ELNKD 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 699 MEELK--ILSEQNKALQSEVQKLQTAVSQQPNKDvvEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENST 776
Cdd:TIGR04523 551 DFELKkeNLEKEIDEKNKEIEELKQTQKSLKKKQ--EEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEK 628
|
490 500
....*....|....*....|....
gi 1907099743 777 LTREVQELKAKQSDQVSFVSLIED 800
Cdd:TIGR04523 629 LSSIIKNIKSKKNKLKQEVKQIKE 652
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
598-1182 |
9.44e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 53.37 E-value: 9.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 598 TSASVLAEELHKVIAEKDKQLKQTEDSLAnEQDHLASKEEELKDVQNMnflLKAEVQKLQALANEQAATAHEVEKMQKSI 677
Cdd:PRK01156 131 NSIFVGQGEMDSLISGDPAQRKKILDEIL-EINSLERNYDKLKDVIDM---LRAEISNIDYLEEKLKSSNLELENIKKQI 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 678 HVKEDKIRLLEEQLQHEVA-------------SKMEELKILSEQNKALQSEVQKLQTAVSQQPNKDV-----VEQMEKCI 739
Cdd:PRK01156 207 ADDEKSHSITLKEIERLSIeynnamddynnlkSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNyykelEERHMKII 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 740 QEKDEKLRTVEELLETGLIQVATREEELSAIRTENST---LTREVQELKAKQSDQVSFVSLIEDLKRVIHEKDG---QIK 813
Cdd:PRK01156 287 NDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEINKyhaIIKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGyemDYN 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 814 SVEELLEVELLKVANKEKTVQALKQEI-EVLKEEIGNAQLEKAHQLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRD- 891
Cdd:PRK01156 367 SYLKSIESLKKKIEEYSKNIERMSAFIsEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNm 446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 892 --LRGRGTCAQVCSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFL-KCQLSHQKHQQASFPS 968
Cdd:PRK01156 447 emLNGQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLeSEEINKSINEYNKIES 526
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 969 QEELQTVISEKEKEITDLCNELESLKNavEHQRKKNNDLREKNWEAMEALASTEKMLQDRVNKTSKERRQHVeaielesK 1048
Cdd:PRK01156 527 ARADLEDIKIKINELKDKHDKYEEIKN--RYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQL-------N 597
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1049 DLLKRLFPT-VSVPSNLNYSE-WLRGFEKKAKACVAGTSDAEAVKVLEHRLKEasemhtllqlECEKYKSVLAETEGIlQ 1126
Cdd:PRK01156 598 DLESRLQEIeIGFPDDKSYIDkSIREIENEANNLNNKYNEIQENKILIEKLRG----------KIDNYKKQIAEIDSI-I 666
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 1907099743 1127 KLQRSVEQEESKWKIKADESQRMIKQMQSSFTASERELERLRQENKDMENLRRERE 1182
Cdd:PRK01156 667 PDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDIN 722
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
369-725 |
1.46e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 1.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 369 ERSSVVIARmKDRIGTLEKEhnifQNKMHASYQETQQMQMKFQQVQEQMEAEIAHLKQENGILRDAVSNTTNQLEsKQSA 448
Cdd:TIGR02168 667 KTNSSILER-RREIEELEEK----IEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLA-RLEA 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 449 ELNKLRQDCGRLVSELNEKTG-------KLQQEGVQKKNAEQAATQLKVQLQEAERRWEEvqsyIRKRTAEHEAAQQDLQ 521
Cdd:TIGR02168 741 EVEQLEERIAQLSKELTELEAeieeleeRLEEAEEELAEAEAEIEELEAQIEQLKEELKA----LREALDELRAELTLLN 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 522 SKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSAs 601
Cdd:TIGR02168 817 EEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE- 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 602 vlAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMnfllkaEVQKLQALANEQAATAHEVEKMQ----KSI 677
Cdd:TIGR02168 896 --LEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVR------IDNLQERLSEEYSLTLEEAEALEnkieDDE 967
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1907099743 678 HVKEDKIRLLEEQLQH----------EVASKMEELKILSEQNKALQSEVQKLQTAVSQ 725
Cdd:TIGR02168 968 EEARRRLKRLENKIKElgpvnlaaieEYEELKERYDFLTAQKEDLTEAKETLEEAIEE 1025
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
733-1024 |
1.50e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 52.62 E-value: 1.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 733 EQMEK--CIQEKDEKLRTVEELLETGLIQVATREEELSAIRTEN-STLTREVQELKAKQSDQVSFVSLIEDLKRVIHEKD 809
Cdd:PRK05771 4 VRMKKvlIVTLKSYKDEVLEALHELGVVHIEDLKEELSNERLRKlRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 810 GQ--IKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIgnAQLEKAHQLSVtsqvqELQNLLRGKeeqvnSMKAALED 887
Cdd:PRK05771 84 LEelIKDVEEELEKIEKEIKELEEEISELENEIKELEQEI--ERLEPWGNFDL-----DLSLLLGFK-----YVSVFVGT 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 888 RDRDlrgrgtcaqvcstpQFEELESVlKEKDNEIKRIEVKLKDT------ESDVSKMSELLKEVQEENKflkcqlshqkh 961
Cdd:PRK05771 152 VPED--------------KLEELKLE-SDVENVEYISTDKGYVYvvvvvlKELSDEVEEELKKLGFERL----------- 205
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907099743 962 qqaSFPSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDL-----------REKNwEAMEALASTEKM 1024
Cdd:PRK05771 206 ---ELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEEllalyeyleieLERA-EALSKFLKTDKT 275
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1089-1325 |
2.93e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.86 E-value: 2.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1089 AVKVLEHRLKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKIKADESQRMIKQMQSSFTASERELERLR 1168
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1169 QENKDMENLRREREHLEMELEKAEMERSTYVMEVRELKDLLTELQKKLDDS---YSEAVRQNEELNLLKTQLNETHSKLQ 1245
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAeeaLLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1246 NEQTERKKVADDLHKAQQSLNSIHSKISLKAAGDTVVIENSDISPEMESPEKETMSVSLNQTVTQLQQLLQEVNQQLTKE 1325
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
407-1035 |
3.20e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.07 E-value: 3.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 407 QMKFQQVQEQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAat 486
Cdd:PTZ00121 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA-- 1396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 487 qlKVQLQEAERRWEEVQSYIRKRTAEHEAaQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQlEQRLMQLMESEQKRASKE 566
Cdd:PTZ00121 1397 --KKKAEEDKKKADELKKAAAAKKKADEA-KKKAEEKKKADEAKKKAEEAKKADEAKKKAE-EAKKAEEAKKKAEEAKKA 1472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 567 ESLQIQVQDILEQNEALKA--QIQQFHSQIAAQTSASVLAEELHKVI-AEKDKQLKQTEDSLANEQDHLASKEEELKDVQ 643
Cdd:PTZ00121 1473 DEAKKKAEEAKKADEAKKKaeEAKKKADEAKKAAEAKKKADEAKKAEeAKKADEAKKAEEAKKADEAKKAEEKKKADELK 1552
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 644 NMNFLLKAEVQKlqalANEQAATAHEVEKMQKSihvKEDKIRLLEEQLQHEVASKMEELKIL-SEQNKALQSEVQKLQTA 722
Cdd:PTZ00121 1553 KAEELKKAEEKK----KAEEAKKAEEDKNMALR---KAEEAKKAEEARIEEVMKLYEEEKKMkAEEAKKAEEAKIKAEEL 1625
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 723 VSQQPNKDVVEQMEKCIQE---KDEKLRTVEELLETGLIQVATREEELSAIRTEnstlTREVQELKAKQSDQVSFVSliE 799
Cdd:PTZ00121 1626 KKAEEEKKKVEQLKKKEAEekkKAEELKKAEEENKIKAAEEAKKAEEDKKKAEE----AKKAEEDEKKAAEALKKEA--E 1699
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 800 DLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLK--EEIGNAQLEKAHQLSVTSQVQELQNLLRGKEEQ 877
Cdd:PTZ00121 1700 EAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKkaEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEA 1779
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 878 VNSMKAALEDRDRDLRGRGTCAQVCStpQFEELESVLKEKD---NEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKC 954
Cdd:PTZ00121 1780 VIEEELDEEDEKRRMEVDKKIKDIFD--NFANIIEGGKEGNlviNDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKN 1857
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 955 QLSHQKHQQASFPSQEELQTVISEKEKEITDlcnELESLKNAVEHQRKKNNDLREKNWEAMEALASTEKMLQDRVNKTSK 1034
Cdd:PTZ00121 1858 NENGEDGNKEADFNKEKDLKEDDEEEIEEAD---EIEKIDKDDIEREIPNNNMAGKNNDIIDDKLDKDEYIKRDAEETRE 1934
|
.
gi 1907099743 1035 E 1035
Cdd:PTZ00121 1935 E 1935
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
509-855 |
4.50e-06 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 50.84 E-value: 4.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 509 RTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQ 588
Cdd:pfam19220 49 RLLELEALLAQERAAYGKLRRELAGLTRRLSAAEGELEELVARLAKLEAALREAEAAKEELRIELRDKTAQAEALERQLA 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 589 QFHSQIAAqtsasvLAEELhkviAEKDKQLKQTEDSLAneqdhlaSKEEELKDVQNMNFLLKAEVQKLQALANEQAATAH 668
Cdd:pfam19220 129 AETEQNRA------LEEEN----KALREEAQAAEKALQ-------RAEGELATARERLALLEQENRRLQALSEEQAAELA 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 669 EVEK----MQKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKALQSEV----QKLQTAVSQQPNKDVV-EQMEKCI 739
Cdd:pfam19220 192 ELTRrlaeLETQLDATRARLRALEGQLAAEQAERERAEAQLEEAVEAHRAERaslrMKLEALTARAAATEQLlAEARNQL 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 740 QEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQELkakQSDQVSFVSLIEDLKRVIHEKDGQIKSVEELL 819
Cdd:pfam19220 272 RDRDEAIRAAERRLKEASIERDTLERRLAGLEADLERRTQQFQEM---QRARAELEERAEMLTKALAAKDAALERAEERI 348
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1907099743 820 EVELLKVANKEKTV----QALKQEIEVLKEEIGNAQLEKA 855
Cdd:pfam19220 349 ASLSDRIAELTKRFeverAALEQANRRLKEELQRERAERA 388
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
503-1326 |
4.56e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.27 E-value: 4.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 503 QSYIRKRTAEHEAAQQDLQSKFvakeNEVQSLHSK--------LTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQ 574
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRL----NESNELHEKqkfylrqsVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQ 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 575 DILEQNEALKAQIQQFHSQIAAQTsasvlaEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNF--LLKAE 652
Cdd:pfam15921 149 NTVHELEAAKCLKEDMLEDSNTQI------EQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFrsLGSAI 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 653 VQKLQALANE---------------QAATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKALQSEVQ 717
Cdd:pfam15921 223 SKILRELDTEisylkgrifpvedqlEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLE 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 718 KLQTAVSQQPN------KDVVEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQELkakqSDQ 791
Cdd:pfam15921 303 IIQEQARNQNSmymrqlSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNL----DDQ 378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 792 VSfvSLIEDLkrviHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQ-LEKAHQLSVTSQVQELQNL 870
Cdd:pfam15921 379 LQ--KLLADL----HKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEaLLKAMKSECQGQMERQMAA 452
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 871 LRGKEE---QVNSMKAALEDRDRDLRgRGTCAQVCSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQE 947
Cdd:pfam15921 453 IQGKNEsleKVSSLTAQLESTKEMLR-KVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQ 531
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 948 ENKFLKCQLSHQKHQQASFpsqEELQTVISEKEKEITDLCNELESLKNAV-EHQRKKNNDLREKnweamealASTEKMLQ 1026
Cdd:pfam15921 532 ELQHLKNEGDHLRNVQTEC---EALKLQMAEKDKVIEILRQQIENMTQLVgQHGRTAGAMQVEK--------AQLEKEIN 600
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1027 DRvnktskerrqhveAIELESKDLLKRlfptvsvpsnlnysewlrgfEKKAKacvagtsdaeaVKVLEHRLKEasemhtl 1106
Cdd:pfam15921 601 DR-------------RLELQEFKILKD--------------------KKDAK-----------IRELEARVSD------- 629
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1107 lqLECEKYKSVLAETEGIlqKLQRSVEQEEskwkikaDESQRMIKQMQSSFTASERELERLRQenkdmeNLRREREHLEM 1186
Cdd:pfam15921 630 --LELEKVKLVNAGSERL--RAVKDIKQER-------DQLLNEVKTSRNELNSLSEDYEVLKR------NFRNKSEEMET 692
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1187 ELEKAEMERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQ-------NEQTERKKVADDLH 1259
Cdd:pfam15921 693 TTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQfleeamtNANKEKHFLKEEKN 772
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907099743 1260 KAQQSLNSIHSKISlKAAGDTVVIEnsdiSPEMESPEKET-MSVSLNQTVTQLQQlLQEVNQQLTKET 1326
Cdd:pfam15921 773 KLSQELSTVATEKN-KMAGELEVLR----SQERRLKEKVAnMEVALDKASLQFAE-CQDIIQRQEQES 834
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
593-1308 |
4.63e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.30 E-value: 4.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 593 QIAAQTSASVLAEELHKVI-AEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVE 671
Cdd:PTZ00121 1167 EEARKAEDAKKAEAARKAEeVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAE 1246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 672 KMQKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKAlqSEVQKLQTAVSQQPNKDVVEqmekcIQEKDEKLRTVEE 751
Cdd:PTZ00121 1247 EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKA--EEKKKADEAKKAEEKKKADE-----AKKKAEEAKKADE 1319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 752 LLETGliQVATREEELSAIRTENSTLTREVQELKAKQsdqvsfvsliedlkrviheKDGQIKSVEELLEVELLKVANKEK 831
Cdd:PTZ00121 1320 AKKKA--EEAKKKADAAKKKAEEAKKAAEAAKAEAEA-------------------AADEAEAAEEKAEAAEKKKEEAKK 1378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 832 TVQALKQEievlKEEIGNAQLEKAHQLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDlrgrgtcaqvcstpqfeele 911
Cdd:PTZ00121 1379 KADAAKKK----AEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKAD-------------------- 1434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 912 sVLKEKDNEIKRIEvKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQAsfpsqEELQTVISEKEKEITDLCNELE 991
Cdd:PTZ00121 1435 -EAKKKAEEAKKAD-EAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKA-----DEAKKKAEEAKKKADEAKKAAE 1507
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 992 SLKNAVE----HQRKKNNDLR--EKNWEAMEALASTEKMLQDRVNKTSKERR-QHVEAIELESKDLLKRLFPtvsvpsnL 1064
Cdd:PTZ00121 1508 AKKKADEakkaEEAKKADEAKkaEEAKKADEAKKAEEKKKADELKKAEELKKaEEKKKAEEAKKAEEDKNMA-------L 1580
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1065 NYSEWLRGFEKKAKACVAGTSDAEAVKVLEHRLKEASEmhtllQLECEKYKSVLAETEGILQKLQRSVEQEESKWKIKAD 1144
Cdd:PTZ00121 1581 RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEA-----KIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKA 1655
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1145 ESQRMIKQMQSSFTASE--RELERLRQENKDmenlrrEREHLEMELEKAEMERstyvmEVRELKDLLTELQKKlddsySE 1222
Cdd:PTZ00121 1656 EEENKIKAAEEAKKAEEdkKKAEEAKKAEED------EKKAAEALKKEAEEAK-----KAEELKKKEAEEKKK-----AE 1719
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1223 AVRQNEELNLLKTQlnethsKLQNEQTERKKVADDLHKAQQSLNSI-HSKISLKAAGDTVVIENSDISPEMESPEKETMS 1301
Cdd:PTZ00121 1720 ELKKAEEENKIKAE------EAKKEAEEDKKKAEEAKKDEEEKKKIaHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRR 1793
|
....*..
gi 1907099743 1302 VSLNQTV 1308
Cdd:PTZ00121 1794 MEVDKKI 1800
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
779-1314 |
7.33e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 7.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 779 REVQELKA--KQSDQVSFVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLEKAH 856
Cdd:COG1196 213 ERYRELKEelKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 857 QLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQ---VCSTPQFEELESVLKEKDNEIKRIEVKLKDTES 933
Cdd:COG1196 293 LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEeelEELEEELEEAEEELEEAEAELAEAEEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 934 DV-SKMSELLKEVQEENKFLKCQLSHQKHQQASFPSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKNW 1012
Cdd:COG1196 373 ELaEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1013 EAMEALASTEKMLQDRVNKTSKERRQHVEAIELESKDLLKRLFPTVSVPSNLNYSE-WLRGFEKKAKACVAGT------- 1084
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEgVKAALLLAGLRGLAGAvavligv 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1085 ----------------------SDAEAVKVLEHRLKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEEskwkiK 1142
Cdd:COG1196 533 eaayeaaleaalaaalqnivveDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVAS-----D 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1143 ADESQRMIKQMQSSFTASERELERLRQENKDMENLRREREHLEMELEKAEMERSTYVMEVRELKDLLTELQKKLDDSYSE 1222
Cdd:COG1196 608 LREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAER 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1223 AVRQNEELNLLKTQLNETHSKLQNEQTERKKVADDLHKAQQSLNSIHSKISLKAAGDTVVIENSDISPEMESPEKETMSV 1302
Cdd:COG1196 688 LAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELER 767
|
570
....*....|..
gi 1907099743 1303 SLNQTVTQLQQL 1314
Cdd:COG1196 768 ELERLEREIEAL 779
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
444-686 |
1.33e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 1.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 444 SKQSAELNKLRQdcgrlvsELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQsk 523
Cdd:COG4942 23 AEAEAELEQLQQ-------EIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA-- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 524 fvAKENEVQSLHSKLTDTLVSKQQLEQ--RLMQLMESE--QKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTS 599
Cdd:COG4942 94 --ELRAELEAQKEELAELLRALYRLGRqpPLALLLSPEdfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 600 AsvlAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHV 679
Cdd:COG4942 172 E---RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGF 248
|
....*..
gi 1907099743 680 KEDKIRL 686
Cdd:COG4942 249 AALKGKL 255
|
|
| Nucleoporin_FG2 |
pfam15967 |
Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of ... |
400-564 |
1.39e-05 |
|
Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of chordate nucleoporins. The proteins carry many repeats of the FG sequence motif.
Pssm-ID: 435043 [Multi-domain] Cd Length: 586 Bit Score: 49.28 E-value: 1.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 400 YQETQQMQmKFQQVQEQMEAEI------AHLKQENGI--LRDAVSNTTNQLEsKQSAELNKLRQDCGRLV--SELNEKTG 469
Cdd:pfam15967 250 CQDVENFQ-KFVKEQKQVQEEIsrmsskAMLKVQDDIkaLKQLLSVAASGLQ-RNSLAIDKLKIETAQELknADIALRTQ 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 470 KlQQEGVQKKNAEQA------ATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQ-------SKFVAKENEVQSLHS 536
Cdd:pfam15967 328 K-TPPGLQHENTAPAdyfrslVEQFEVQLQQYRQQIEELENHLTTQSSSSHITPQDLSlamqklyQTFVALAAQLQSVHE 406
|
170 180 190
....*....|....*....|....*....|..
gi 1907099743 537 KLtdTLVSKQQLEQRLMQLMES----EQKRAS 564
Cdd:pfam15967 407 NV--KILKEQYLGYRKAFLEDStdvfEAKRAE 436
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
472-711 |
1.43e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.63 E-value: 1.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 472 QQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVakENEVQSLHSKLTDTLVSKQQLEQR 551
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLL--LQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 552 LMQLmesEQKRASKEESLQIQVQDILEQNeaLKAQIQQFHSQIAAQtsaSVLAEELHKVIAEKDKQLKQTEDSLANEQDH 631
Cdd:COG3206 242 LAAL---RAQLGSGPDALPELLQSPVIQQ--LRAQLAELEAELAEL---SARYTPNHPDVIALRAQIAALRAQLQQEAQR 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 632 LASKeeelkdvqnmnflLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQ------HEVASKMEELKIL 705
Cdd:COG3206 314 ILAS-------------LEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEvarelyESLLQRLEEARLA 380
|
....*.
gi 1907099743 706 SEQNKA 711
Cdd:COG3206 381 EALTVG 386
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
494-1054 |
2.18e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 2.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 494 EAERRWEEVQSYIRK-----RTAEHEAAQQDLQSKFVAKENEVQSLHSKLT--DTLVSKQQLE--QRLMQLMESEQKRAS 564
Cdd:COG4913 222 DTFEAADALVEHFDDlerahEALEDAREQIELLEPIRELAERYAAARERLAelEYLRAALRLWfaQRRLELLEAELEELR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 565 KE-ESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVlaEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQ 643
Cdd:COG4913 302 AElARLEAELERLEARLDALREELDELEAQIRGNGGDRL--EQLEREIERLERELEERERRRARLEALLAALGLPLPASA 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 644 nmnfllkAEVQKLQALANEQAATAHEvekMQKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKALQSEVQKLQTAV 723
Cdd:COG4913 380 -------EEFAALRAEAAALLEALEE---ELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDAL 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 724 SQQPNKD------VVEQMEkcIQEKDEK--------------------------LRTVEELLETGLIQ---VATREEELS 768
Cdd:COG4913 450 AEALGLDeaelpfVGELIE--VRPEEERwrgaiervlggfaltllvppehyaaaLRWVNRLHLRGRLVyerVRTGLPDPE 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 769 AIRTENSTLTRE-----------VQELKAKQSDQVSfVSLIEDLKRV---------------IHEKDGQ--IKSVEELLE 820
Cdd:COG4913 528 RPRLDPDSLAGKldfkphpfrawLEAELGRRFDYVC-VDSPEELRRHpraitragqvkgngtRHEKDDRrrIRSRYVLGF 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 821 VELLKVANKEKTVQALKQEIEVLKEEIgnaqlekahqlsvtsqvqelqnllrgkeeqvnsmkAALEDRDRDLRGRGTCAQ 900
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERL-----------------------------------EALEAELDALQERREALQ 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 901 VCSTPQFEELEsvLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEenkflkCQLSHQKHQQAsfpsQEELQTVISEKE 980
Cdd:COG4913 652 RLAEYSWDEID--VASAEREIAELEAELERLDASSDDLAALEEQLEE------LEAELEELEEE----LDELKGEIGRLE 719
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907099743 981 KEITDLCNELESLKNAVEHQRKKNNDLREKNWEAMEALASTEKMLQDRVNKTSKERRQHVEAIELESKDLLKRL 1054
Cdd:COG4913 720 KELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAM 793
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1122-1242 |
2.47e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 48.70 E-value: 2.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1122 EGILQKL-QRSVEQEESKWKIKADESQRMIKQMQSSFTASERELERLRQENKDMEN----LRREREHLEMELEKAEMERS 1196
Cdd:COG2433 379 EEALEELiEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAeleeKDERIERLERELSEARSEER 458
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1907099743 1197 TYVMEVRELKDLLTE---LQKKLDDSYSEAVRQNEELNLLKTQLNETHS 1242
Cdd:COG2433 459 REIRKDREISRLDREierLERELEEERERIEELKRKLERLKELWKLEHS 507
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
351-805 |
3.87e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 48.13 E-value: 3.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 351 AASKERCKQLTQEMmteKERSSVVIARMKDRIGTLEKEHNiFQNKMHASYQETQQmqmkFQQVQEQMEAEIAHLKQENGI 430
Cdd:PRK10929 19 AATAPDEKQITQEL---EQAKAAKTPAQAEIVEALQSALN-WLEERKGSLERAKQ----YQQVIDNFPKLSAELRQQLNN 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 431 LRDAVSNttnqLESKQSAelNKLRQDCGRLVSELNEKTGKLQQEgvQKKNAE---------QAATQLKVQLQEAERRwee 501
Cdd:PRK10929 91 ERDEPRS----VPPNMST--DALEQEILQVSSQLLEKSRQAQQE--QDRAREisdslsqlpQQQTEARRQLNEIERR--- 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 502 VQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLhskltdtlvskqqleqrlmqlmESEQKRAS-KEESLQIQVQDILEQN 580
Cdd:PRK10929 160 LQTLGTPNTPLAQAQLTALQAESAALKALVDEL----------------------ELAQLSANnRQELARLRSELAKKRS 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 581 EALKAQIQQFHSQIAAQTSAsvlaeelhkviaEKDKQLKQTEdSLANEQDHL-ASKEEELKDVQNMNFLLKAEVQKLQAL 659
Cdd:PRK10929 218 QQLDAYLQALRNQLNSQRQR------------EAERALESTE-LLAEQSGDLpKSIVAQFKINRELSQALNQQAQRMDLI 284
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 660 ANEQAATAHEVEKMQKSIhvkeDKIR----------LLEEQLQHEVA------------SKMEELKILSEQNKALQSEVQ 717
Cdd:PRK10929 285 ASQQRQAASQTLQVRQAL----NTLReqsqwlgvsnALGEALRAQVArlpempkpqqldTEMAQLRVQRLRYEDLLNKQP 360
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 718 KLQTAvsQQPNKDVVEQMEKCIQekDEKLRTVEELLETGLIQVATREEELSAIRTENSTLT---REVQELKAK------Q 788
Cdd:PRK10929 361 QLRQI--RQADGQPLTAEQNRIL--DAQLRTQRELLNSLLSGGDTLILELTKLKVANSQLEdalKEVNEATHRylfwvaD 436
|
490 500
....*....|....*....|
gi 1907099743 789 SDQVSF---VSLIEDLKRVI 805
Cdd:PRK10929 437 VSPISLsypLEIAQDLRRLL 456
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
970-1273 |
4.25e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 4.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 970 EELQTVISEKEKEITDLCNELESLKNAVEHQRKKNN---DLREKNWEAMEA--------LASTEKMLQDRVNKTSkERRQ 1038
Cdd:TIGR02169 187 ERLDLIIDEKRQQLERLRREREKAERYQALLKEKREyegYELLKEKEALERqkeaierqLASLEEELEKLTEEIS-ELEK 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1039 HVEAIELESKDLLKRLfptvsvpSNLNYSEWLRGFEKKAKACVAGTSDAEAVKVLEHRLKEASEMHTLLQLECEKYKSVL 1118
Cdd:TIGR02169 266 RLEEIEQLLEELNKKI-------KDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1119 AETEGILQKLQRSVEQEESKWKIKADESQRMIKQMQSSFTASERELERLRQENKDMENLRREREHLEMELEKaemersty 1198
Cdd:TIGR02169 339 EELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDR-------- 410
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907099743 1199 vmevreLKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQNEQTERKKVADDLHKAQQSLNSIHSKIS 1273
Cdd:TIGR02169 411 ------LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
442-890 |
4.47e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 4.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 442 LESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYI-----RKRTAEHEAA 516
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELeelreELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 517 QQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDI-LEQNEALKAQIQQFHSQIA 595
Cdd:COG4717 127 LLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLsLATEEELQDLAEELEELQQ 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 596 AQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDhlaskEEELKDVQNMNFLLkAEVQKLQALANEQAATAHEVEKMQK 675
Cdd:COG4717 207 RLAELEEELEEAQEELEELEEELEQLENELEAAAL-----EERLKEARLLLLIA-AALLALLGLGGSLLSLILTIAGVLF 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 676 SIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKALQSEVQKLQTA--VSQQPNKDVVEQMEKCIQEKDEKLRTVEELL 753
Cdd:COG4717 281 LVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAAlgLPPDLSPEELLELLDRIEELQELLREAEELE 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 754 ETglIQVATREEELSAIRTENSTLTREVQELKAKQSDQ-VSFVSLIEDLKRVIHEKDGQIKSVEELLEVE--LLKVANKE 830
Cdd:COG4717 361 EE--LQLEELEQEIAALLAEAGVEDEEELRAALEQAEEyQELKEELEELEEQLEELLGELEELLEALDEEelEEELEELE 438
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 831 KTVQALKQEIEVLKEEIGNAQlekaHQLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDR 890
Cdd:COG4717 439 EELEELEEELEELREELAELE----AELEQLEEDGELAELLQELEELKAELRELAEEWAA 494
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
470-813 |
4.73e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 47.97 E-value: 4.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 470 KLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLhsKLTDTLVSKQQLE 549
Cdd:PLN02939 64 KLQSNTDENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDF--QLEDLVGMIQNAE 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 550 QRLMQLmesEQKRASKEEslqiQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSL---- 625
Cdd:PLN02939 142 KNILLL---NQARLQALE----DLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELlirg 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 626 ANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLqheVASKMEELKIL 705
Cdd:PLN02939 215 ATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKF---IVAQEDVSKLS 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 706 SEQNKALQSEVQKLQTAVSQQPNKdvVEQMEKCIQEKDEkLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQELK 785
Cdd:PLN02939 292 PLQYDCWWEKVENLQDLLDRATNQ--VEKAALVLDQNQD-LRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQ 368
|
330 340
....*....|....*....|....*...
gi 1907099743 786 AKQSDQVSFVSLIEDLKRVIHEKDGQIK 813
Cdd:PLN02939 369 ASDHEIHSYIQLYQESIKEFQDTLSKLK 396
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1083-1267 |
5.76e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 5.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1083 GTSDAEAVKVLEHRLKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKwkIKADESQRMIkqmqssfTASER 1162
Cdd:COG4913 605 GFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDE--IDVASAEREI-------AELEA 675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1163 ELERLRQENKDMENLRREREHLEMELEKAEMERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHS 1242
Cdd:COG4913 676 ELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERF 755
|
170 180
....*....|....*....|....*
gi 1907099743 1243 KLQNEQTERKKVADDLHKAQQSLNS 1267
Cdd:COG4913 756 AAALGDAVERELRENLEERIDALRA 780
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
481-711 |
8.17e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 8.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 481 AEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQskfvAKENEVQSLHSKLTDTLVSKQQLEQRLMQLmesEQ 560
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA----ALERRIAALARRIRALEQELAALEAELAEL---EK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 561 KRASKEESLQIQVQDILEQNEALKAQIQQ------FHSQIAAQTSASV-LAEELHKVIAEKDKQLKQTEDSLANEQDHLA 633
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQpplallLSPEDFLDAVRRLqYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907099743 634 SKEEELKDVQNMnflLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKA 711
Cdd:COG4942 171 AERAELEALLAE---LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
398-599 |
8.49e-05 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 46.29 E-value: 8.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 398 ASYQETQQMQMKFQQVQEQMEAEIAHLKQENGiLRDAVSNTTNQLESKQS--------AELNKLRQDCGRLVSELNEKTG 469
Cdd:pfam09787 4 SAKQELADYKQKAARILQSKEKLIASLKEGSG-VEGLDSSTALTLELEELrqerdllrEEIQKLRGQIQQLRTELQELEA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 470 KLQQEGVQkknAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDL-------QSKFVAKENEVQSLHSKLTD-- 540
Cdd:pfam09787 83 QQQEEAES---SREQLQELEEQLATERSARREAEAELERLQEELRYLEEELrrskatlQSRIKDREAEIEKLRNQLTSks 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 541 -TLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTS 599
Cdd:pfam09787 160 qSSSSQSELENRLHQLTETLIQKQTMLEALSTEKNSLVLQLERMEQQIKELQGEGSNGTS 219
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
352-993 |
8.57e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.27 E-value: 8.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 352 ASKERCKQLTQEMmTEKERSSVVIARMKDRIGTLEKEHNIFQNKMHASYQETQQMQMKFQQVQEQMEAEIAHLKQENGIL 431
Cdd:TIGR00618 160 AKSKEKKELLMNL-FPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQT 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 432 RDAVSNTTNQLESKQSAElnKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAATQLKVQL---------QEAERRWEEV 502
Cdd:TIGR00618 239 QQSHAYLTQKREAQEEQL--KKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAhikavtqieQQAQRIHTEL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 503 QSYIRKRTAE--HEAAQQDLQSKFVAKENEVQSLHSK-----------------------LTDTLVSKQQLEQRLMQLME 557
Cdd:TIGR00618 317 QSKMRSRAKLlmKRAAHVKQQSSIEEQRRLLQTLHSQeihirdahevatsireiscqqhtLTQHIHTLQQQKTTLTQKLQ 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 558 SEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEE 637
Cdd:TIGR00618 397 SLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRY---AELCAAAITCTAQCEKLEKIHLQESAQSLKEREQ 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 638 ELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLE--------------------EQLQHEVAS 697
Cdd:TIGR00618 474 QLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGpltrrmqrgeqtyaqletseEDVYHQLTS 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 698 KMEELKILSEQNKALQSEVQKLqtavsQQPNKDVVEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTL 777
Cdd:TIGR00618 554 ERKQRASLKEQMQEIQQSFSIL-----TQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQ 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 778 TREVQELKAKQSDQVSFVSLIEDLKRVIHEKDGQ-IKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQL---- 852
Cdd:TIGR00618 629 DVRLHLQQCSQELALKLTALHALQLTLTQERVREhALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTllre 708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 853 EKAHQLSVTSQVQELQNLLRGKEEQVN--------SMKAALEDRDRDLRGRgTCAQVCSTPQFEELESVLKEKDNEIKRI 924
Cdd:TIGR00618 709 LETHIEEYDREFNEIENASSSLGSDLAaredalnqSLKELMHQARTVLKAR-TEAHFNNNEEVTAALQTGAELSHLAAEI 787
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907099743 925 EVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQASfpSQEELQTVISEKEKEITDLCNELESL 993
Cdd:TIGR00618 788 QFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQ--EEEQFLSRLEEKSATLGEITHQLLKY 854
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
783-1265 |
1.12e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.60 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 783 ELKAKQSDQVSFVSLIEDLKRVIHEKD---GQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLEKahqLS 859
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKEkelEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKEL---ES 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 860 VTSQVQELQNLLRGKEEQVNSMKAALED------RDRDLRGRGTCAQVCS------TPQFEELESVLKEKDNEIKRIEVK 927
Cdd:PRK03918 250 LEGSKRKLEEKIRELEERIEELKKEIEEleekvkELKELKEKAEEYIKLSefyeeyLDELREIEKRLSRLEEEINGIEER 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 928 LKDTESDVSKMSELLKEVQE-ENKFLKCQLSHQKHQQASfPSQEELQTVISE-KEKEITDLCNELESLKNAVEHQRKKNN 1005
Cdd:PRK03918 330 IKELEEKEERLEELKKKLKElEKRLEELEERHELYEEAK-AKKEELERLKKRlTGLTPEKLEKELEELEKAKEEIEEEIS 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1006 DLREKNWEameaLASTEKMLQDRVNK---------------TSKERRQHVEAIELESKDLLKRLFPTVSVPSNL-NYSEW 1069
Cdd:PRK03918 409 KITARIGE----LKKEIKELKKAIEElkkakgkcpvcgrelTEEHRKELLEEYTAELKRIEKELKEIEEKERKLrKELRE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1070 LRGFEKKAKACVAGTSDAEAVKVLEHRLKEAS-EMHTLLQLECEKYKSVLAETEGILQKLQRSVEQE----------ESK 1138
Cdd:PRK03918 485 LEKVLKKESELIKLKELAEQLKELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLeelkkklaelEKK 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1139 WKIKADESQRMIKQMQSSFTASERELE--------------RLRQENKDMENLRREREHLEMELEKAEMERSTYVMEVRE 1204
Cdd:PRK03918 565 LDELEEELAELLKELEELGFESVEELEerlkelepfyneylELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEE 644
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907099743 1205 LKDLLTELQKKLDDSYSEAVR---------------QNEELNLLKTQLNETHSKLQNEQTERKKVADDLHKAQQSL 1265
Cdd:PRK03918 645 LRKELEELEKKYSEEEYEELReeylelsrelaglraELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKAL 720
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
414-655 |
1.54e-04 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 46.37 E-value: 1.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 414 QEQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNK--------LRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAA 485
Cdd:NF012221 1564 KERAEADRQRLEQEKQQQLAAISGSQSQLESTDQNALETngqaqrdaILEESRAVTKELTTLAQGLDALDSQATYAGESG 1643
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 486 TQLKVQLqeAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKlTDTLVskQQLEQRLMQLMESEQKRASK 565
Cdd:NF012221 1644 DQWRNPF--AGGLLDRVQEQLDDAKKISGKQLADAKQRHVDNQQKVKDAVAK-SEAGV--AQGEQNQANAEQDIDDAKAD 1718
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 566 EESLQIQVqdILEQNEALKAQIQQFHS----QIAAQTSASVLAEELHKVIAEKdKQLKQTEDSLANEQ----DHLASKEE 637
Cdd:NF012221 1719 AEKRKDDA--LAKQNEAQQAESDANAAandaQSRGEQDASAAENKANQAQADA-KGAKQDESDKPNRQgaagSGLSGKAY 1795
|
250
....*....|....*...
gi 1907099743 638 ELKDVQNMNFLLKAEVQK 655
Cdd:NF012221 1796 SVEGVAEPGSHINPDSPA 1813
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
432-791 |
1.73e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.19 E-value: 1.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 432 RDAVSNTTNQLESKQSAELNKLrqdCGRLVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQsyirkrta 511
Cdd:PRK02224 186 RGSLDQLKAQIEEKEEKDLHER---LNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELE-------- 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 512 EHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEAL-------K 584
Cdd:PRK02224 255 TLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELrdrleecR 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 585 AQIQQFHSQI-AAQTSASVL---AEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDvqNMNFLLKAEVQK----- 655
Cdd:PRK02224 335 VAAQAHNEEAeSLREDADDLeerAEELREEAAELESELEEAREAVEDRREEIEELEEEIEE--LRERFGDAPVDLgnaed 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 656 -LQALANEQAATAHEVEKMQKSIHVKEDKIR----LLEEQLQHEVASKMEELKILS------EQNKALQSEVQKLQTAVS 724
Cdd:PRK02224 413 fLEELREERDELREREAELEATLRTARERVEeaeaLLEAGKCPECGQPVEGSPHVEtieedrERVEELEAELEDLEEEVE 492
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907099743 725 QQPNK-----DVVEQmEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQELKAKQSDQ 791
Cdd:PRK02224 493 EVEERleraeDLVEA-EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEA 563
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
681-1245 |
2.21e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.80 E-value: 2.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 681 EDKIRLLEEQLQHEVASKME-ELKILSEQNKALqsEVQKLQTAVSQQPNKDVVEQMEKCIQEKDEKLRTVEELLETgliq 759
Cdd:PRK02224 193 KAQIEEKEEKDLHERLNGLEsELAELDEEIERY--EEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRET---- 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 760 VATREEELSAIRTENSTLTREVQELKAKQSDQVSFVSL----IEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQA 835
Cdd:PRK02224 267 IAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLddadAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAES 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 836 LKQEIEVLKEEIGNAQlEKAHQLSvtSQVQELQNLLRGKEEQVnsmkAALEDRDRDLRGRGTCAQVcstpQFEELESVLK 915
Cdd:PRK02224 347 LREDADDLEERAEELR-EEAAELE--SELEEAREAVEDRREEI----EELEEEIEELRERFGDAPV----DLGNAEDFLE 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 916 EKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQASFPSqeelqtVISEKEKEITDLCNELESLKN 995
Cdd:PRK02224 416 ELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVE------TIEEDRERVEELEAELEDLEE 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 996 AVEHqrkknndlREKNWEAMEALASTEKMLQdrvnkTSKERRQHVEAIELESKDLLKrlfptvsvpsnlnysewlrgfEK 1075
Cdd:PRK02224 490 EVEE--------VEERLERAEDLVEAEDRIE-----RLEERREDLEELIAERRETIE---------------------EK 535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1076 KAKAcvagTSDAEAVKVLEHRLKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESkwkikadesqrmIKQMQS 1155
Cdd:PRK02224 536 RERA----EELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER------------IRTLLA 599
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1156 SFTASERELERLRQENKD---MENLRRER-------------EHLEMELEKAEMERS---TYVMEVRELKDLLTELQKKL 1216
Cdd:PRK02224 600 AIADAEDEIERLREKREAlaeLNDERRERlaekrerkreleaEFDEARIEEAREDKEraeEYLEQVEEKLDELREERDDL 679
|
570 580 590
....*....|....*....|....*....|..
gi 1907099743 1217 DDSYSEAVRQNEELNLLK---TQLNETHSKLQ 1245
Cdd:PRK02224 680 QAEIGAVENELEELEELRerrEALENRVEALE 711
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
391-1043 |
2.37e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 45.58 E-value: 2.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 391 IFQNKMHASYQETQQMQMKFQQVQEQMEA--EIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDCGRLVSEL---- 464
Cdd:pfam10174 57 VLKEQYRVTQEENQHLQLTIQALQDELRAqrDLNQLLQQDFTTSPVDGEDKFSTPELTEENFRRLQSEHERQAKELfllr 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 465 --------------------NEKTGKL----QQEGVQKKN-------------AEQAATQLKVQLQEAERRWEEVQSYIR 507
Cdd:pfam10174 137 ktleemelrietqkqtlgarDESIKKLlemlQSKGLPKKSgeedwertrriaeAEMQLGHLEVLLDQKEKENIHLREELH 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 508 KRTAEHE--AAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKA 585
Cdd:pfam10174 217 RRNQLQPdpAKTKALQTVIEMKDTKISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKFMKNKIDQLKQ 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 586 QIQQFHSQIAA-QTSASVLAEELH------KVIAEKDKQLKQTEDSLANEQDHLASKEEELKDvqnmnfLLKAEVQKLQA 658
Cdd:pfam10174 297 ELSKKESELLAlQTKLETLTNQNSdckqhiEVLKESLTAKEQRAAILQTEVDALRLRLEEKES------FLNKKTKQLQD 370
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 659 LANEQAATAHEVEKMQKSIHVKEDKIRLLE---EQLQHEVASKMEELKILSEQNKALQSEVQKLQTAVSqqpnkdvveQM 735
Cdd:pfam10174 371 LTEEKSTLAGEIRDLKDMLDVKERKINVLQkkiENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALT---------TL 441
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 736 EKCIQEKDeklRTVEELLEtgliqvaTREEELSAIRTENSTLTREVQELKAKQSdqvsfvslieDLKRVIHEKDGQIKSV 815
Cdd:pfam10174 442 EEALSEKE---RIIERLKE-------QREREDRERLEELESLKKENKDLKEKVS----------ALQPELTEKESSLIDL 501
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 816 EELLEVELLKVANKEKTVQALKQEIEVLKEEIG--NAQLEKAHQLSVTSQVQ-ELQNLLRGKEEQVNsmkaaledRDRDL 892
Cdd:pfam10174 502 KEHASSLASSGLKKDSKLKSLEIAVEQKKEECSklENQLKKAHNAEEAVRTNpEINDRIRLLEQEVA--------RYKEE 573
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 893 RGRgtcaqvcSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQASFPSQEEL 972
Cdd:pfam10174 574 SGK-------AQAEVERLLGILREVENEKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRRED 646
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907099743 973 QTVISEKEKEITDLCNELESLKNAVEHQRKKnndlreknweameaLASTEKMLQDR---VNKTSKERRQHVEAI 1043
Cdd:pfam10174 647 NLADNSQQLQLEELMGALEKTRQELDATKAR--------------LSSTQQSLAEKdghLTNLRAERRKQLEEI 706
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
413-590 |
2.39e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.39 E-value: 2.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 413 VQEQMEAEIAHLKQENGILRDAVSNTTNQLESKQsAELNKLRQDCGrlVSELNEKTGKLQQegvQKKNAEQAATQLKVQL 492
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAE-AALEEFRQKNG--LVDLSEEAKLLLQ---QLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 493 QEAERRWEEVQSYI-------------------RKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLM 553
Cdd:COG3206 236 AEAEARLAALRAQLgsgpdalpellqspviqqlRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRIL 315
|
170 180 190
....*....|....*....|....*....|....*..
gi 1907099743 554 QLMESEQkraskeESLQIQVQDILEQNEALKAQIQQF 590
Cdd:COG3206 316 ASLEAEL------EALQAREASLQAQLAQLEARLAEL 346
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
335-892 |
2.65e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.60 E-value: 2.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 335 QLQEKERLLSAMKEDAAASKERCKQLTQEMMTEKERSSVVIARMKDRIGTLEKEHNIFQNKMHASYQETQQMQMKFQQVQ 414
Cdd:pfam12128 277 RQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSEL 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 415 EQMEAEIahlkqengilrDAVSNTTNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAATQ-----LK 489
Cdd:pfam12128 357 ENLEERL-----------KALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQaleseLR 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 490 VQLQEAERRWEEVQSYIRKRTAEHE------AAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLmesEQKRA 563
Cdd:pfam12128 426 EQLEAGKLEFNEEEYRLKSRLGELKlrlnqaTATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQA---RKRRD 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 564 SKEESLQIQVQDILEQNEALKAQIQQF----HSQIA-AQTSASVLAEELHKVIAEkdKQLKQTEdsLANEQDhlaskEEE 638
Cdd:pfam12128 503 QASEALRQASRRLEERQSALDELELQLfpqaGTLLHfLRKEAPDWEQSIGKVISP--ELLHRTD--LDPEVW-----DGS 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 639 LKDVQNMnFLLKAEVQKLQA---LANEQAATAhEVEKMQKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKALQSE 715
Cdd:pfam12128 574 VGGELNL-YGVKLDLKRIDVpewAASEEELRE-RLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNA 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 716 VQKLQ--TAVSQQPNKDVVEQMEKCIQEKDEKLRTVE---ELLETGLIQ-VATREEELSAIRTENSTLTREVQELKAKQS 789
Cdd:pfam12128 652 RLDLRrlFDEKQSEKDKKNKALAERKDSANERLNSLEaqlKQLDKKHQAwLEEQKEQKREARTEKQAYWQVVEGALDAQL 731
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 790 DQVSFVSLIEDLKRvihekDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLEKAHQLSVTSQVQELQN 869
Cdd:pfam12128 732 ALLKAAIAARRSGA-----KAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWL 806
|
570 580
....*....|....*....|....
gi 1907099743 870 LLRGK-EEQVNSMKAALEDRDRDL 892
Cdd:pfam12128 807 QRRPRlATQLSNIERAISELQQQL 830
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
414-887 |
6.87e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 6.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 414 QEQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQE-------GVQKKNAEQAAT 486
Cdd:COG4913 304 LARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLeallaalGLPLPASAEEFA 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 487 QLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKltDTLVSKQQLEQR--------------- 551
Cdd:COG4913 384 ALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERR--KSNIPARLLALRdalaealgldeaelp 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 552 ----LMQLMESEQK-RASKE-------------ESLQIQVQDILEQNeALKAQIQQFHsqiAAQTSASVLAEELHkviae 613
Cdd:COG4913 462 fvgeLIEVRPEEERwRGAIErvlggfaltllvpPEHYAAALRWVNRL-HLRGRLVYER---VRTGLPDPERPRLD----- 532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 614 kdkqlkqtEDSLANEqdhLASKEEELKDvqnmnfLLKAEVQKLQALAneQAATAHEVEKMQKSI------------HVKE 681
Cdd:COG4913 533 --------PDSLAGK---LDFKPHPFRA------WLEAELGRRFDYV--CVDSPEELRRHPRAItragqvkgngtrHEKD 593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 682 DKIRLLEE-QLQHEVASKmeeLKILSEQNKALQSEVQKLQTAVSQqpnkdvVEQMEKCIQEKDEKLRTVEELLETGL--- 757
Cdd:COG4913 594 DRRRIRSRyVLGFDNRAK---LAALEAELAELEEELAEAEERLEA------LEAELDALQERREALQRLAEYSWDEIdva 664
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 758 ---IQVATREEELSAIRTENSTLTREVQELKAKQSDQVSFVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTV- 833
Cdd:COG4913 665 saeREIAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLAr 744
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 1907099743 834 QALKQEIEVLKEEIGNAQLEKAHQLSVTSQVQELQNLLRGKEEQ-VNSMKAALED 887
Cdd:COG4913 745 LELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEElERAMRAFNRE 799
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
525-745 |
7.54e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 7.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 525 VAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAA-QTSASVL 603
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAElEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 604 AEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDK 683
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907099743 684 IRLLE-------EQLQHEVASKMEELKILSEQNKALQSEVQKLQTavSQQPNKDVVEQMEKCIQEKDEK 745
Cdd:COG4942 176 LEALLaeleeerAALEALKAERQKLLARLEKELAELAAELAELQQ--EAEELEALIARLEAEAAAAAER 242
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
545-1326 |
7.80e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.19 E-value: 7.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 545 KQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEalKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDS 624
Cdd:pfam02463 171 KKEALKKLIEETENLAELIIDLEELKLQELKLKEQAK--KALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRD 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 625 LANEQDH---LASKEEELKDVQNMNFLLKAEVQKLQalaneqaatahevekmqksiHVKEDKIRLLEEQLQHEVASKMEE 701
Cdd:pfam02463 249 EQEEIESskqEIEKEEEKLAQVLKENKEEEKEKKLQ--------------------EEELKLLAKEEEELKSELLKLERR 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 702 LKILSEQNKALQSEVQKLQTAVSQQpnkdvveqmekciQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTREV 781
Cdd:pfam02463 309 KVDDEEKLKESEKEKKKAEKELKKE-------------KEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEEL 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 782 QELKAKQSDQVSFVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLEKAhqlsvt 861
Cdd:pfam02463 376 LAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEE------ 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 862 SQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQVCSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSEL 941
Cdd:pfam02463 450 KEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHG 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 942 LKEVQEENKfLKCQLSHQKHQQASFPSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKNWEAMEALAST 1021
Cdd:pfam02463 530 RLGDLGVAV-ENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQL 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1022 EKMLQDRVNKTSKERRQHVEAIELESKDLLKRLFPTVSVPSNLNYSEWLRGFEKKAKACVAGTSDAEAVKVLEHRLKEAS 1101
Cdd:pfam02463 609 DKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESE 688
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1102 EM-HTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKIKADESQRMIKQMQSSFTASERELERLRQENKDMENLRRE 1180
Cdd:pfam02463 689 LAkEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSE 768
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1181 REhLEMELEKAEMERSTYVMEVRELKDLLTELQKKLDDSYSE---AVRQNEELNLLKTQLNETHSKLQNEQTERKKVADD 1257
Cdd:pfam02463 769 LS-LKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEElkeEAELLEEEQLLIEQEEKIKEEELEELALELKEEQK 847
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907099743 1258 LHKAQQSLNSIHSKISLKAAGDTVVIENSDISPEMESPEKETMSVSLNQTVTQLQQLLQEVNQQLTKET 1326
Cdd:pfam02463 848 LEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKE 916
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
556-857 |
8.33e-04 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 43.69 E-value: 8.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 556 MESEQKR-ASKEESLQIQVQDILEQNEALKAQIQQfHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLAS 634
Cdd:PLN03229 413 VDPERKVnMKKREAVKTPVRELEGEVEKLKEQILK-AKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENL 491
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 635 KEEELK---DVQNMNFLLKAEVQKLQALANEQAATA-------HEVEKMQ-----KSIHVKEDKIRLLEEQLQHEVASKM 699
Cdd:PLN03229 492 REEFSKansQDQLMHPVLMEKIEKLKDEFNKRLSRApnylslkYKLDMLNefsraKALSEKKSKAEKLKAEINKKFKEVM 571
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 700 EELKIlSEQNKALQSEVQKLQTAVSQQPNKDVVEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAiRTENSTLTR 779
Cdd:PLN03229 572 DRPEI-KEKMEALKAEVASSGASSGDELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDTAE-QTPPPNLQE 649
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907099743 780 EVQELKAKQSDQVSFVSLIEDLKRVIHEKDGQIksveeLLEVELLKVANKEKtVQALKQEI-EVLKEEIGNAQLEKAHQ 857
Cdd:PLN03229 650 KIESLNEEINKKIERVIRSSDLKSKIELLKLEV-----AKASKTPDVTEKEK-IEALEQQIkQKIAEALNSSELKEKFE 722
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
326-1245 |
9.43e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 43.89 E-value: 9.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 326 KGELSGLLHQLQEKERLLSAMKEDAAASKERCKQLTQEMMTEKERSSVVIARMKDRIGTLEKEHNIFQNKMHASYQETQQ 405
Cdd:TIGR01612 785 KSKISEIKNHYNDQINIDNIKDEDAKQNYDKSKEYIKTISIKEDEIFKIINEMKFMKDDFLNKVDKFINFENNCKEKIDS 864
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 406 MQMKFQQVQEQMEAEIA--HLKQENGILRDAVS--NTTNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNA 481
Cdd:TIGR01612 865 EHEQFAELTNKIKAEISddKLNDYEKKFNDSKSliNEINKSIEEEYQNINTLKKVDEYIKICENTKESIEKFHNKQNILK 944
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 482 EQAATQLKV----QLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQqlEQRLMQLME 557
Cdd:TIGR01612 945 EILNKNIDTikesNLIEKSYKDKFDNTLIDKINELDKAFKDASLNDYEAKNNELIKYFNDLKANLGKNK--ENMLYHQFD 1022
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 558 SEQKraskeeslqiQVQDILEQNEALKAQIQQFhsQIAAQTSASVLAEELHKVIAE-----KDKQLKQTEDSLANeqdhL 632
Cdd:TIGR01612 1023 EKEK----------ATNDIEQKIEDANKNIPNI--EIAIHTSIYNIIDEIEKEIGKniellNKEILEEAEINITN----F 1086
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 633 ASKEEELKDVQNMNFLLKAEVQklqalaneqaaTAHEVEKMQksihvkeDKIRLLEEQLQHEVaSKMEELKILSEQN-KA 711
Cdd:TIGR01612 1087 NEIKEKLKHYNFDDFGKEENIK-----------YADEINKIK-------DDIKNLDQKIDHHI-KALEEIKKKSENYiDE 1147
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 712 LQSEVQKLQTAVSQQPNKDVVEQMEKCIQE---KDEKLRTVEELLETGLIQVATREEE-----------LSAIRTENSTL 777
Cdd:TIGR01612 1148 IKAQINDLEDVADKAISNDDPEEIEKKIENivtKIDKKKNIYDEIKKLLNEIAEIEKDktsleevkginLSYGKNLGKLF 1227
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 778 TREVQELKAKQSDQV-SFVSLIEDLKRvIHEKDGQIKSVEELLEVELLKVA------NKEKTVQALKQEIEVLKEEIGNA 850
Cdd:TIGR01612 1228 LEKIDEEKKKSEHMIkAMEAYIEDLDE-IKEKSPEIENEMGIEMDIKAEMEtfnishDDDKDHHIISKKHDENISDIREK 1306
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 851 QLEKAHQLSVTSQVQELQnllrgKEEQVNSMKAALEDRDRDLRgRGTCAQVCSTPQFEELESVLKEKDNEIKRIEVKLKD 930
Cdd:TIGR01612 1307 SLKIIEDFSEESDINDIK-----KELQKNLLDAQKHNSDINLY-LNEIANIYNILKLNKIKKIIDEVKEYTKEIEENNKN 1380
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 931 TESDVSKMSELLKEVQEENKFLKCQLSHQ-----KHQQASFPSQEELQTVI--------------SEKEKEITDLCNELE 991
Cdd:TIGR01612 1381 IKDELDKSEKLIKKIKDDINLEECKSKIEstlddKDIDECIKKIKELKNHIlseesnidtyfknaDENNENVLLLFKNIE 1460
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 992 SLKNAVEH--QRKKNNDLREKNWEAMEAlasteKMLQDRVNKTSKERRQHVEAIElESKDLLKRLFPTVSVPSNLNYSEW 1069
Cdd:TIGR01612 1461 MADNKSQHilKIKKDNATNDHDFNINEL-----KEHIDKSKGCKDEADKNAKAIE-KNKELFEQYKKDVTELLNKYSALA 1534
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1070 LRGFEKKAKacvagtSDAEAVkvlehrLKEASEMHTLLQLECEKYKSVLAEtegiLQKLQRSVEQEESkwkiKADESQRM 1149
Cdd:TIGR01612 1535 IKNKFAKTK------KDSEII------IKEIKDAHKKFILEAEKSEQKIKE----IKKEKFRIEDDAA----KNDKSNKA 1594
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1150 IKQMQSSFTASERELERLRQENKDMENLRREREHLEMELEKAEMErsTYVMEVRELKDLLTELQKKLDDSYSeavrQNEE 1229
Cdd:TIGR01612 1595 AIDIQLSLENFENKFLKISDIKKKINDCLKETESIEKKISSFSID--SQDTELKENGDNLNSLQEFLESLKD----QKKN 1668
|
970
....*....|....*.
gi 1907099743 1230 LNLLKTQLNETHSKLQ 1245
Cdd:TIGR01612 1669 IEDKKKELDELDSEIE 1684
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
462-667 |
1.08e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.89 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 462 SELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQskfvAKENEVQSLHSKLTDT 541
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIA----EAEAEIEERREELGER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 542 LVSKQQ---LEQRLMQLMESEQ-----KRASKEESLQIQVQDILEQNEALKAQIQQFHSQI--------AAQTSASVLAE 605
Cdd:COG3883 92 ARALYRsggSVSYLDVLLGSESfsdflDRLSALSKIADADADLLEELKADKAELEAKKAELeaklaeleALKAELEAAKA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907099743 606 ELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATA 667
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAA 233
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
936-1220 |
1.14e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 43.38 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 936 SKMSELLKEVQEENKFlkcqlshqkhqQASFPSQEELQTVISEKEKEITDLCNELESLKNAVEHQR---KKNNDLREKNW 1012
Cdd:PRK05771 16 SYKDEVLEALHELGVV-----------HIEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNplrEEKKKVSVKSL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1013 EamEALASTEKMLQ---DRVNKTSKERRqhveaiELESK-----DLLKRLFPTVSVPSNLNYsewLRGFEkkakacvagT 1084
Cdd:PRK05771 85 E--ELIKDVEEELEkieKEIKELEEEIS------ELENEikeleQEIERLEPWGNFDLDLSL---LLGFK---------Y 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1085 SDAEAVKVLEHRLKEASEMHTLLQLECEKY------------KSVLAETEGILQKLqrSVEQEESKWKIKADESQRMIKQ 1152
Cdd:PRK05771 145 VSVFVGTVPEDKLEELKLESDVENVEYISTdkgyvyvvvvvlKELSDEVEEELKKL--GFERLELEEEGTPSELIREIKE 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1153 MQSSFtasERELERLRQE-----NKDMENLRREREHLEMELEKAEME------RSTYVME----VRELKDLLTELQKKLD 1217
Cdd:PRK05771 223 ELEEI---EKERESLLEElkelaKKYLEELLALYEYLEIELERAEALskflktDKTFAIEgwvpEDRVKKLKELIDKATG 299
|
...
gi 1907099743 1218 DSY 1220
Cdd:PRK05771 300 GSA 302
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
826-964 |
1.39e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.84 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 826 VANKEKTVQALKQEIEV-LKEEIGNAQLEKAHQLSV-TSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRgtcaqvcs 903
Cdd:PRK12704 44 LEEAKKEAEAIKKEALLeAKEEIHKLRNEFEKELRErRNELQKLEKRLLQKEENLDRKLELLEKREEELEKK-------- 115
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907099743 904 TPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMS------ELLKEVQEENKFLKCQLSHQKHQQA 964
Cdd:PRK12704 116 EKELEQKQQELEKKEEELEELIEEQLQELERISGLTaeeakeILLEKVEEEARHEAAVLIKEIEEEA 182
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
310-639 |
1.42e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 1.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 310 LKEKSGVI---------KEALKKSNKGELSGLLHQLQEKERLLSAMKEDAAASKERCKQLTQEMMTEKERssvvIARMKD 380
Cdd:TIGR02169 648 LFEKSGAMtggsraprgGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRK----IGEIEK 723
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 381 RIGTLEKEHNIFQNKMHASYQETQQMQMKFQQVQ----------EQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAEL 450
Cdd:TIGR02169 724 EIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKselkeleariEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKL 803
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 451 NKLRQDCGRLVSELNEKTGKLQQEG------------------VQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAE 512
Cdd:TIGR02169 804 EEEVSRIEARLREIEQKLNRLTLEKeylekeiqelqeqridlkEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESR 883
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 513 HEaaqqDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEA------LKAQ 586
Cdd:TIGR02169 884 LG----DLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEelsledVQAE 959
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1907099743 587 IQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEEL 639
Cdd:TIGR02169 960 LQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEY 1012
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
323-528 |
1.44e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.18 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 323 KSNKGELSGLLHQLQEKERLLSAMKEDAAASKERCKQLTQEMMTEKERSSVviaRMKDRIGTLEKEHNIFQNkMHASYQE 402
Cdd:pfam15921 649 KDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKM---QLKSAQSELEQTRNTLKS-MEGSDGH 724
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 403 TQQMQMKFQQVQEQMEAEIAHLKQENGILRDAVSNTtNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAE 482
Cdd:pfam15921 725 AMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNA-NKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLK 803
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1907099743 483 QAATQLKVQLQEAERRWEEVQSYIRKRtaEHEAAQQDLQSKFVAKE 528
Cdd:pfam15921 804 EKVANMEVALDKASLQFAECQDIIQRQ--EQESVRLKLQHTLDVKE 847
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
415-599 |
1.47e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 415 EQMEAEIAHLKQENGILrdAVSNTTNQLESKQS---AELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAT--QLK 489
Cdd:COG3206 192 EEAEAALEEFRQKNGLV--DLSEEAKLLLQQLSeleSQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPViqQLR 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 490 VQLQEAERRWEE-----------VQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMES 558
Cdd:COG3206 270 AQLAELEAELAElsarytpnhpdVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPEL 349
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1907099743 559 EQKRASKEESLQIQvQDILEQneaLKAQIQQFHSQIAAQTS 599
Cdd:COG3206 350 EAELRRLEREVEVA-RELYES---LLQRLEEARLAEALTVG 386
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
642-1028 |
1.48e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.29 E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 642 VQNMNFLLKAEVQKLQALANEQAATAHE-----VEKMQKSIHVKEDKIRLLEEQlqheVASKMEElkilsEQNKALQSEV 716
Cdd:pfam12128 148 IQNDRTLLGRERVELRSLARQFALCDSEsplrhIDKIAKAMHSKEGKFRDVKSM----IVAILED-----DGVVPPKSRL 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 717 QKLQTAVSQQPNKDVVEQMEkcIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQELKAKQSDQvsFVS 796
Cdd:pfam12128 219 NRQQVEHWIRDIQAIAGIMK--IRPEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQL--LRT 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 797 LIEDLKRVIHEKDGQIKSVEEllevellKVANKEKTVQALK-QEIEVLKEEIGNAQLEKAHQLSVTSQVQELQNLLRGKE 875
Cdd:pfam12128 295 LDDQWKEKRDELNGELSAADA-------AVAKDRSELEALEdQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALT 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 876 EQVNSMKAALEDRDRDLRGRgtCAQVCSTPQfEELESVLKEKDNEIKRIEVKLKDTESDV-SKMSELLKEVQEENKFLKC 954
Cdd:pfam12128 368 GKHQDVTAKYNRRRSKIKEQ--NNRDIAGIK-DKLAKIREARDRQLAVAEDDLQALESELrEQLEAGKLEFNEEEYRLKS 444
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907099743 955 QLSHQKHQQASFPSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKNWEAMEALASTEKMLQDR 1028
Cdd:pfam12128 445 RLGELKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEER 518
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
798-1003 |
1.96e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 798 IEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLEKAH-QLSVTSQVQELQNLLRG--K 874
Cdd:COG4942 36 IAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAElRAELEAQKEELAELLRAlyR 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 875 EEQVNSMKAAL--EDRDRDLRGRGTCAQVcstpqFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFL 952
Cdd:COG4942 116 LGRQPPLALLLspEDFLDAVRRLQYLKYL-----APARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAAL 190
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1907099743 953 KCQLSHQKHQQASFPSQE-ELQTVISEKEKEITDLCNELESLKNAVEHQRKK 1003
Cdd:COG4942 191 EALKAERQKLLARLEKELaELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1087-1277 |
2.06e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1087 AEAVKVLEHRLKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKIKADESQRMIKQ-------MQSSFTA 1159
Cdd:COG4942 54 LKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQpplalllSPEDFLD 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1160 SERELERLRQENkdmENLRREREHLEMELEkaemerstyvmEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNE 1239
Cdd:COG4942 134 AVRRLQYLKYLA---PARREQAEELRADLA-----------ELAALRAELEAERAELEALLAELEEERAALEALKAERQK 199
|
170 180 190
....*....|....*....|....*....|....*...
gi 1907099743 1240 THSKLQNEQTERKKVADDLHKAQQSLNSIHSKISLKAA 1277
Cdd:COG4942 200 LLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
972-1234 |
2.53e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.92 E-value: 2.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 972 LQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKNWEAMEALastekmlQDRVNKTSKERRQHVEAIELESKDLL 1051
Cdd:PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARK-------QNKYDELVEEAKTIKAEIEELTDELL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1052 KRLFPTVSVPSNLNYsewLRGFEKKAKacvagtSDAEAVKVLEHRLKEASEMHTLLQ-LE-----CEKYKSVLAETEGIL 1125
Cdd:PHA02562 245 NLVMDIEDPSAALNK---LNTAAAKIK------SKIEQFQKVIKMYEKGGVCPTCTQqISegpdrITKIKDKLKELQHSL 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1126 QKLQRSVEQEESKwKIKADESQRMIKQMQSSftaserelerLRQENKDMENLRREREHLEMELEKAEMERSTYVMEVREL 1205
Cdd:PHA02562 316 EKLDTAIDELEEI-MDEFNEQSKKLLELKNK----------ISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKL 384
|
250 260
....*....|....*....|....*....
gi 1907099743 1206 KDLLTELQKKLDDSYSEAVRQNEELNLLK 1234
Cdd:PHA02562 385 QDELDKIVKTKSELVKEKYHRGIVTDLLK 413
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1093-1281 |
2.70e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 2.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1093 LEHRLKEASE-MHTLLQLE--CEKYKSvLAETEGILQKLQRSV-----EQEESKWKIKADESQRMIKQMQSSFTASEREL 1164
Cdd:COG4913 240 AHEALEDAREqIELLEPIRelAERYAA-ARERLAELEYLRAALrlwfaQRRLELLEAELEELRAELARLEAELERLEARL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1165 ERLRQENKDMENLRRER-----EHLEMELEKAEMERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNE 1239
Cdd:COG4913 319 DALREELDELEAQIRGNggdrlEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEE 398
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1907099743 1240 THSKLQNEQTERKkvaDDLHKAQQSLNSIHSKI-SLKAAGDTV 1281
Cdd:COG4913 399 ELEALEEALAEAE---AALRDLRRELRELEAEIaSLERRKSNI 438
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1105-1321 |
2.81e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.80 E-value: 2.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1105 TLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKIKADESQRMIKQMQSSFTASERELERLRQENKDMENLRREREHL 1184
Cdd:pfam07888 30 ELLQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSAS 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1185 EMELEKaemERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQNEQTERKKVADDLHKAQQS 1264
Cdd:pfam07888 110 SEELSE---EKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEE 186
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1907099743 1265 LNSIHSkislkaagDTVVIENSdispemeSPEKETMSVSLNQTVTQLQQLLQEVNQQ 1321
Cdd:pfam07888 187 LRSLSK--------EFQELRNS-------LAQRDTQVLQLQDTITTLTQKLTTAHRK 228
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
525-1053 |
3.14e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.02 E-value: 3.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 525 VAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKaqiqqfHSQIAAQTSASVLA 604
Cdd:pfam05483 95 VSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATR------HLCNLLKETCARSA 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 605 EELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQN----MNFLLKAEVQKLQalaneqaataHEVEKMQKSIHVK 680
Cdd:pfam05483 169 EKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENarleMHFKLKEDHEKIQ----------HLEEEYKKEINDK 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 681 EDKIRLLEEQLQhEVASKMEELKILSEQNKALQSEVQKlQTAVSQQPNKDVVEQMEKCIQEKDEKLRTVEELLETGL--- 757
Cdd:pfam05483 239 EKQVSLLLIQIT-EKENKMKDLTFLLEESRDKANQLEE-KTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKale 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 758 --IQVATREeeLSAIRTENSTLTREVQELKAKQSDQVS----FVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEK 831
Cdd:pfam05483 317 edLQIATKT--ICQLTEEKEAQMEELNKAKAAHSFVVTefeaTTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELE 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 832 TVQALKQEIEVLKEEIGNAQLEKAHQLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQVCSTPQFEELE 911
Cdd:pfam05483 395 EMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVE 474
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 912 SVLKEKDNEikrievKLKDTE--SDVSKMSELLKEVQEENKFLKCQLSHQKHQQASFPSQEE--LQTVISEKEKEiTDLC 987
Cdd:pfam05483 475 DLKTELEKE------KLKNIEltAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEErmLKQIENLEEKE-MNLR 547
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907099743 988 NELESLKNAVEHQR---KKNNDLREKNWEAME-ALASTEKMLQDRVNKTSKERRQ------HVEAIELESKDLLKR 1053
Cdd:pfam05483 548 DELESVREEFIQKGdevKCKLDKSEENARSIEyEVLKKEKQMKILENKCNNLKKQienknkNIEELHQENKALKKK 623
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
293-782 |
3.28e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.02 E-value: 3.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 293 LKTMMFSEDEALCVVDLLKEKSGVIKEALKKSNK------GELSGLLHQLQEKERLLSAMKEDAAASKERCKQLTQEMMT 366
Cdd:pfam05483 256 MKDLTFLLEESRDKANQLEEKTKLQDENLKELIEkkdhltKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEA 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 367 EKERS-------SVVIARMKDRIGTLEKEHNIFQNKMHASYQETQQMQMKFQQVQEQMEaEIAHLKQENGILRDAVSNTT 439
Cdd:pfam05483 336 QMEELnkakaahSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELE-EMTKFKNNKEVELEELKKIL 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 440 NQlESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEH-----E 514
Cdd:pfam05483 415 AE-DEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNieltaH 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 515 AAQQDLQSKFVAKE--NEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHS 592
Cdd:pfam05483 494 CDKLLLENKELTQEasDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEE 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 593 QIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNM-NFLLKAEVQKLQALANEQAATAHEVE 671
Cdd:pfam05483 574 NARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAeNKQLNAYEIKVNKLELELASAKQKFE 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 672 KM----QKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKALQSEVQKLQTAVSQQPNkdvveQMEKCIQEKDEKLR 747
Cdd:pfam05483 654 EIidnyQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKH-----QYDKIIEERDSELG 728
|
490 500 510
....*....|....*....|....*....|....*
gi 1907099743 748 TVEELLETGLIQVATREEELSAIRTENSTLTREVQ 782
Cdd:pfam05483 729 LYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLE 763
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1150-1322 |
4.42e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 4.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1150 IKQMQSSFTASERELERLRQENKDMeNLRREREHLEMELEKAEMERSTYVMEVRELKDLLTELQKKLDDSYSEA--VRQN 1227
Cdd:COG3206 184 LPELRKELEEAEAALEEFRQKNGLV-DLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALpeLLQS 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1228 EELNLLKTQLNETHSKLQNEQTERKKVADDLHKAQQSLNSIHSKISLKAAGDTVVIENSdispemespeketmSVSLNQT 1307
Cdd:COG3206 263 PVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAE--------------LEALQAR 328
|
170
....*....|....*
gi 1907099743 1308 VTQLQQLLQEVNQQL 1322
Cdd:COG3206 329 EASLQAQLAQLEARL 343
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
546-662 |
4.83e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.22 E-value: 4.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 546 QQLEQRLMQL------MESEQKRASKE--ESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQ 617
Cdd:COG0542 414 DELERRLEQLeiekeaLKKEQDEASFErlAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQRYGKIPELEKE 493
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1907099743 618 LKQTEDSLANEQDHLASK--EEELKDVQNM------NFLLKAEVQKLQALANE 662
Cdd:COG0542 494 LAELEEELAELAPLLREEvtEEDIAEVVSRwtgipvGKLLEGEREKLLNLEEE 546
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1098-1263 |
4.89e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.26 E-value: 4.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1098 KEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKIKAD-ESQRMIKQMQSSFTAS-ERELERLRQENKDME 1175
Cdd:pfam17380 282 KAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEmDRQAAIYAEQERMAMErERELERIRQEERKRE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1176 NLRREREHLEMELEKaemerstyvmeVRELKDLLTELQKKlddsySEAVRQN-EELNLLKTQLNETHSKLQNEQTERKKV 1254
Cdd:pfam17380 362 LERIRQEEIAMEISR-----------MRELERLQMERQQK-----NERVRQElEAARKVKILEEERQRKIQQQKVEMEQI 425
|
....*....
gi 1907099743 1255 ADDLHKAQQ 1263
Cdd:pfam17380 426 RAEQEEARQ 434
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
611-814 |
4.89e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 4.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 611 IAEKDKQLKQTEDSLANEQDHLASKEEELKDVQnmnfllkaevQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQ 690
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALL----------KQLAALERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 691 LQHEVASKMEELKILSEQNKALQ--SEVQKLQTAVSQQPNKD----------VVEQMEKCIQEKDEKLRTVEEL------ 752
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYrlGRQPPLALLLSPEDFLDavrrlqylkyLAPARREQAEELRADLAELAALraelea 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907099743 753 ----LETGLIQVATREEELSAIRTE--------NSTLTREVQELKAKQSDQVSFVSLIEDLKRVIHEKDGQIKS 814
Cdd:COG4942 172 eraeLEALLAELEEERAALEALKAErqkllarlEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
601-773 |
5.85e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 40.33 E-value: 5.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 601 SVLAEEL---HKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKmqksi 677
Cdd:PRK09039 42 FFLSREIsgkDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEG----- 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 678 hvkedKIRLLEEQL---QHEVASKMEELKILSEQNKALQSEVQKLQTAVSQQPNKDvveqmekciQEKDEKLRTVEELLE 754
Cdd:PRK09039 117 -----RAGELAQELdseKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD---------RESQAKIADLGRRLN 182
|
170
....*....|....*....
gi 1907099743 755 TGLiqvATREEELSAIRTE 773
Cdd:PRK09039 183 VAL---AQRVQELNRYRSE 198
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1079-1265 |
6.13e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 6.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1079 ACVAGTSDAEAVKVLEHRLKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQeeskwkikadeSQRMIKQMQSSFT 1158
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAA-----------LARRIRALEQELA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1159 ASERELERLRQENKDMENLRREREHLEMELEKA--------------------EMERSTYVME--VRELKDLLTEL---Q 1213
Cdd:COG4942 80 ALEAELAELEKEIAELRAELEAQKEELAELLRAlyrlgrqpplalllspedflDAVRRLQYLKylAPARREQAEELradL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1907099743 1214 KKLDDSYSEAVRQNEELNLLKTQLNETHSKLQNEQTERKKVADDLHKAQQSL 1265
Cdd:COG4942 160 AELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAEL 211
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1087-1320 |
6.18e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.20 E-value: 6.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1087 AEAVKVLEHRLKEASemHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKwkikADESQRMIKQMQSSFTASERELER 1166
Cdd:TIGR02168 212 AERYKELKAELRELE--LALLVLRLEELREELEELQEELKEAEEELEELTAE----LQELEEKLEELRLEVSELEEEIEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1167 LRQENKdmeNLRREREHLEMELEKAEMERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQN 1246
Cdd:TIGR02168 286 LQKELY---ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1247 E--------------QTERKKVADDLHKAQQSLNSIHSKI--------SLKAAGDTVVIENSDISPEMESPEKETMSVSL 1304
Cdd:TIGR02168 363 LeaeleelesrleelEEQLETLRSKVAQLELQIASLNNEIerlearleRLEDRRERLQQEIEELLKKLEEAELKELQAEL 442
|
250
....*....|....*.
gi 1907099743 1305 NQTVTQLQQLLQEVNQ 1320
Cdd:TIGR02168 443 EELEEELEELQEELER 458
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
481-596 |
6.56e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 40.42 E-value: 6.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 481 AEQAATQLKVQLQEAERRWEEVQSYI--RKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMES 558
Cdd:COG1566 81 LQAALAQAEAQLAAAEAQLARLEAELgaEAEIAAAEAQLAAAQAQLDLAQRELERYQALYKKGAVSQQELDEARAALDAA 160
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1907099743 559 EQKRASKEESLQIQVQDILEQNE--ALKAQIQQFHSQIAA 596
Cdd:COG1566 161 QAQLEAAQAQLAQAQAGLREEEElaAAQAQVAQAEAALAQ 200
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
564-776 |
6.58e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 6.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 564 SKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKD-- 641
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEE---YNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEra 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 642 ---------VQNMNFLLKAE-----VQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQhEVASKMEELKILSE 707
Cdd:COG3883 93 ralyrsggsVSYLDVLLGSEsfsdfLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLA-ELEALKAELEAAKA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907099743 708 QNKALQSEVQKLQTAVSQQPNKDVVEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENST 776
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 240
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
841-1264 |
6.81e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 6.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 841 EVLKEEIGNAQLEKAHQLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQVCSTPQ-FEELESVLKEKDN 919
Cdd:COG4717 67 ELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQeLEALEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 920 EIKRIEVKLKDTESDVSKMSELLKEVQEENKFLkcqlshqkhqqasfpsQEELQTVISEKEKEITDLCNELESLKNAVEH 999
Cdd:COG4717 147 RLEELEERLEELRELEEELEELEAELAELQEEL----------------EELLEQLSLATEEELQDLAEELEELQQRLAE 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1000 QRKKNNDLREKNWEAMEALASTEKMLQDrvnktsKERRQHVEAIELESKDLLKRLFPTVSVPSNLNYSEWLRGFekkAKA 1079
Cdd:COG4717 211 LEEELEEAQEELEELEEELEQLENELEA------AALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGV---LFL 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1080 CVAGTSDAEAVKVLEHRLKEASEMHTLLQLECEKYKSvlAETEGILQKLQRSVEQEESKWKIKADESQRmIKQMQSSFTA 1159
Cdd:COG4717 282 VLGLLALLFLLLAREKASLGKEAEELQALPALEELEE--EELEELLAALGLPPDLSPEELLELLDRIEE-LQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 1160 SERELERLRQENKDMENLRREREHLEMELEKAEMERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQN-----EELNLLK 1234
Cdd:COG4717 359 LEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDeeeleEELEELE 438
|
410 420 430
....*....|....*....|....*....|
gi 1907099743 1235 TQLNETHSKLQNEQTERKKVADDLHKAQQS 1264
Cdd:COG4717 439 EELEELEEELEELREELAELEAELEQLEED 468
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
576-999 |
7.54e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.52 E-value: 7.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 576 ILEQNEALKAQIQQFHSQIaaqtsasvLAEELHKviaEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQK 655
Cdd:COG4717 28 IYGPNEAGKSTLLAFIRAM--------LLERLEK---EADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 656 LQALANEQAATAHEVEKMQKSIHVKEDKIRLLE-----EQLQHEVASKMEELKILSEQNKALQSEVQKLQTAVSQ--QPN 728
Cdd:COG4717 97 LEELEEELEELEAELEELREELEKLEKLLQLLPlyqelEALEAELAELPERLEELEERLEELRELEEELEELEAElaELQ 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 729 KDVVEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQELKAKQSDQ----------------- 791
Cdd:COG4717 177 EELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAaleerlkearlllliaa 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 792 --VSFVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLE-----KAHQLSVTSQV 864
Cdd:COG4717 257 alLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEEleellAALGLPPDLSP 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 865 QELQNLLRgKEEQVNSMKAALEDRDRDLRgrgtcAQVCSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKE 944
Cdd:COG4717 337 EELLELLD-RIEELQELLREAEELEEELQ-----LEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQ 410
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 1907099743 945 VQEENKFLKCQLSHQKHQQASfPSQEELQTVISEKEKEITDLCNELESLKNAVEH 999
Cdd:COG4717 411 LEELLGELEELLEALDEEELE-EELEELEEELEELEEELEELREELAELEAELEQ 464
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
598-877 |
9.01e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.49 E-value: 9.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 598 TSASVLAEELHKVIAEKDKQLKQTEDSLAN-EQDHL-ASKEEELKDVQNMNFLLKAEVQKlQALANEQAATAHEVEKMQK 675
Cdd:pfam17380 266 TENEFLNQLLHIVQHQKAVSERQQQEKFEKmEQERLrQEKEEKAREVERRRKLEEAEKAR-QAEMDRQAAIYAEQERMAM 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 676 SIHVKEDKIRL------LEEQLQHEVA---SKMEELKIL----SEQNKALQSEV-----QKLQTAVSQQPNKDVVEQMEK 737
Cdd:pfam17380 345 ERERELERIRQeerkreLERIRQEEIAmeiSRMRELERLqmerQQKNERVRQELeaarkVKILEEERQRKIQQQKVEMEQ 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907099743 738 CIQEKDE----KLRTVEELLETGLIQV----ATREEELSAIRTENSTLTREVQELKAKQSDQvsfvSLIEDLKRVIHEKD 809
Cdd:pfam17380 425 IRAEQEEarqrEVRRLEEERAREMERVrleeQERQQQVERLRQQEEERKRKKLELEKEKRDR----KRAEEQRRKILEKE 500
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907099743 810 GQIKSVEELLEVELLKVANKEktvQALKQEIEVLKEEIGNAQLEKAHQLSVTSQVQELQNLLRGKEEQ 877
Cdd:pfam17380 501 LEERKQAMIEEERKRKLLEKE---MEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEER 565
|
|
| |
