|
Name |
Accession |
Description |
Interval |
E-value |
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
150-912 |
0e+00 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 1158.81 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 150 LQAQLKELQRENDLLRKELDIKDSKLGSSMNSIKTFWSPELKKERVLRKEEAARMSVLKEQMRVSHEENQHLQLTIQALQ 229
Cdd:pfam10174 1 LQAQLRDLQRENELLRRELDIKESKLGSSMNSIKTFWSPELKKERALRKEEAARISVLKEQYRVTQEENQHLQLTIQALQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 230 DELRTQRDLNHLLQQE---SGNRGAEHF-TIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESI 305
Cdd:pfam10174 81 DELRAQRDLNQLLQQDfttSPVDGEDKFsTPELTEENFRRLQSEHERQAKELFLLRKTLEEMELRIETQKQTLGARDESI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 306 KKLLEMLQSKGLPSKSLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELHRRSQLQPEPAKTKALQTVIEMKDT 385
Cdd:pfam10174 161 KKLLEMLQSKGLPKKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELHRRNQLQPDPAKTKALQTVIEMKDT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 386 KIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNS 465
Cdd:pfam10174 241 KISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNS 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 466 DCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQ 545
Cdd:pfam10174 321 DCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQ 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 546 KKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDL 625
Cdd:pfam10174 401 KKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQREREDRERLEELESLKKENKDL 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 626 KEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKqaeqlfnqmynpAHNIED 705
Cdd:pfam10174 481 KEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKK------------AHNAEE 548
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 706 DSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELE----RHMKDQNKKVANLKYNQQ 781
Cdd:pfam10174 549 AVRTNPEINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELEsltlRQMKEQNKKVANIKHGQQ 628
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 782 LEKKKNAQLLEEVRRREDSMVDNSQHLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILE 861
Cdd:pfam10174 629 EMKKKGAQLLEEARRREDNLADNSQQLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLEEILE 708
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|.
gi 1907100919 862 MKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKDRLVHQLKQQ 912
Cdd:pfam10174 709 MKQEALLAAISEKDANIALLELSSSKKKKTQEEVMALKREKDRLVHQLKQQ 759
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
363-913 |
4.10e-19 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 93.16 E-value: 4.10e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 363 RSQLQPEPAKTKALQTVIEMKDTKIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQE 442
Cdd:TIGR04523 46 KNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVE 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 443 LSKKE--------------SELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALR---LRLEEKESF 505
Cdd:TIGR04523 126 LNKLEkqkkenkknidkflTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKnklLKLELLLSN 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 506 LNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALAT 585
Cdd:TIGR04523 206 LKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKE 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 586 LEEALSEKERIIERLKEQRERDdrerleEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLK 665
Cdd:TIGR04523 286 LEKQLNQLKSEISDLNNQKEQD------WNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENS 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 666 SLEIAIEQKKEECNKLE---AQLKKQAEQLFNQMYNPAHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLL 742
Cdd:TIGR04523 360 EKQRELEEKQNEIEKLKkenQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNN 439
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 743 EILKEVENEKNDKDKKIAELERHMKDQNKKVANLKYnqqlEKKKNAQLLEEVRRREDSmvDNSQHLQIEELMNALEKTRQ 822
Cdd:TIGR04523 440 SEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSR----SINKIKQNLEQKQKELKS--KEKELKKLNEEKKELEEKVK 513
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 823 ELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEI-LEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKRE 901
Cdd:TIGR04523 514 DLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDdFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQ 593
|
570
....*....|..
gi 1907100919 902 KDRLVHQLKQQV 913
Cdd:TIGR04523 594 KEKEKKDLIKEI 605
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
413-905 |
1.26e-18 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 91.66 E-value: 1.26e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 413 EDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQnsdcKQHIEVLKESLTAKEQRAAILQTEV 492
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKE----VKELEELKEEIEELEKELESLEGSK 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 493 DALRLRLEEKESFLNKKTKQLQDLTE---------EKGTLAGEIRDMKDMLEVKERKINV----LQKKIENLQEQLRD-- 557
Cdd:PRK03918 255 RKLEEKIRELEERIEELKKEIEELEEkvkelkelkEKAEEYIKLSEFYEEYLDELREIEKrlsrLEEEINGIEERIKEle 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 558 -KDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIiERLKEQRERDDRERLE-EIESFRKENKDLKEKVNALQAE 635
Cdd:PRK03918 335 eKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEEL-ERLKKRLTGLTPEKLEkELEELEKAKEEIEEEISKITAR 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 636 LTEKESSLIDLKEHASSLASAG-------------------------LKRDSK-LKSLEIAIEQKKEECNKLEAQLKKQA 689
Cdd:PRK03918 414 IGELKKEIKELKKAIEELKKAKgkcpvcgrelteehrkelleeytaeLKRIEKeLKEIEEKERKLRKELRELEKVLKKES 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 690 EQLFN-QMYNPAHNIEddSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRL---LEILKEVENEKNDKDKKIAELERH 765
Cdd:PRK03918 494 ELIKLkELAEQLKELE--EKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLkkeLEKLEELKKKLAELEKKLDELEEE 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 766 MKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQIEElmNALEKTRQELDATKARLASTQQSLAEKEAHL 845
Cdd:PRK03918 572 LAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREE--KELKKLEEELDKAFEELAETEKRLEELRKEL 649
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907100919 846 ANLRI----ERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKDRL 905
Cdd:PRK03918 650 EELEKkyseEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKEL 713
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
438-912 |
3.51e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 90.38 E-value: 3.51e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 438 QLKQELSKKESELLALqtKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLT 517
Cdd:COG1196 217 ELKEELKELEAELLLL--KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 518 EEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERII 597
Cdd:COG1196 295 AELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 598 ERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEE 677
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 678 CNKLEAQLKKQAEQLFNQMYNPAHNIEDDSRMNPEFADRLKQLDKEASYY-RDECGKAQAEVDRLLEILKEVENEKNDKD 756
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEgFLEGVKAALLLAGLRGLAGAVAVLIGVEA 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 757 KKIAELE-----RHMKDQNKKVANLKYNQQLEKKKNAQ----LLEEVRRREDSMVDNSQHLQIEELMNALEKTRQELDAT 827
Cdd:COG1196 535 AYEAALEaalaaALQNIVVEDDEVAAAAIEYLKAAKAGratfLPLDKIRARAALAAALARGAIGAAVDLVASDLREADAR 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 828 KARLASTQQSLAEKEAHLANLRIERRK----QLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKD 903
Cdd:COG1196 615 YYVLGDTLLGRTLVAARLEAALRRAVTlagrLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELE 694
|
....*....
gi 1907100919 904 RLVHQLKQQ 912
Cdd:COG1196 695 LEEALLAEE 703
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
433-692 |
1.16e-17 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 88.97 E-value: 1.16e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 433 KTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQ 512
Cdd:TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 513 LQDLTEEKGTLAGEIRDMKDMLEVKERKINVL-----QKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLE 587
Cdd:TIGR02169 753 IENVKSELKELEARIEELEEDLHKLEEALNDLearlsHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 588 EALSEKERIIERLKEQRErddrERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSL 667
Cdd:TIGR02169 833 KEIQELQEQRIDLKEQIK----SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908
|
250 260
....*....|....*....|....*
gi 1907100919 668 EIAIEQKKEECNKLEAQLKKQAEQL 692
Cdd:TIGR02169 909 EAQIEKKRKRLSELKAKLEALEEEL 933
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
191-919 |
1.23e-17 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 88.59 E-value: 1.23e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 191 KKERVLRKEEAARMSV---------LKEQM-RVSHEENQHLQLtiQALQDELRTQRDLNHLLQQESgnrgaehftielTE 260
Cdd:TIGR02169 171 KKEKALEELEEVEENIerldliideKRQQLeRLRREREKAERY--QALLKEKREYEGYELLKEKEA------------LE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 261 ENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEmlqskglpskslEDDNERTRRMAEAESQVS 340
Cdd:TIGR02169 237 RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE------------EEQLRVKEKIGELEAEIA 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 341 HLEVILDQKEKEnihLREELHRRSQLQPEPAKTKAlqtVIEMKDTKIASLERNIRDLEDEVQMLKANGVLNTEDREEEIK 420
Cdd:TIGR02169 305 SLERSIAEKERE---LEDAEERLAKLEAEIDKLLA---EIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDK 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 421 QIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAkeqraaiLQTEVDALRLRLE 500
Cdd:TIGR02169 379 EFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINE-------LEEEKEDKALEIK 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 501 EKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSL-----QTD 575
Cdd:TIGR02169 452 KQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVhgtvaQLG 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 576 SSNTDTALAtLEEALSEK------------ERIIERLKEQR-ERDDRERLEEIESFRKENKDLKEK-------------- 628
Cdd:TIGR02169 532 SVGERYATA-IEVAAGNRlnnvvveddavaKEAIELLKRRKaGRATFLPLNKMRDERRDLSILSEDgvigfavdlvefdp 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 629 ---------------VNALQA---------------ELTEKESSLIDLKEHASSLASAGLKRDSKLKSLeiaiEQKKEEC 678
Cdd:TIGR02169 611 kyepafkyvfgdtlvVEDIEAarrlmgkyrmvtlegELFEKSGAMTGGSRAPRGGILFSRSEPAELQRL----RERLEGL 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 679 NKLEAQLKKQAEQLFNQMYNPAHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKK 758
Cdd:TIGR02169 687 KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEAR 766
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 759 IAELERHMKDQNKKVANLK--YNQQLEKKKNAQL--LEEVRRRedsmvdnsqhlqIEELMNALEKTRQELDATKARLAST 834
Cdd:TIGR02169 767 IEELEEDLHKLEEALNDLEarLSHSRIPEIQAELskLEEEVSR------------IEARLREIEQKLNRLTLEKEYLEKE 834
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 835 QQSLAEKEAHLANLRIERRKQLEEiLEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKDRLVHQLKQQVY 914
Cdd:TIGR02169 835 IQELQEQRIDLKEQIKSIEKEIEN-LNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIE 913
|
....*
gi 1907100919 915 RSRKH 919
Cdd:TIGR02169 914 KKRKR 918
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
348-905 |
3.08e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 87.30 E-value: 3.08e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 348 QKEKENIHLREELHRRSQLQpepAKTKALQTVIEMKDTKIASLERNIRDLEDEVQMLKAngVLNTEDREEEIKQIEVYKS 427
Cdd:COG1196 219 KEELKELEAELLLLKLRELE---AELEELEAELEELEAELEELEAELAELEAELEELRL--ELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 428 HSKfmktkIDQLKQELSKKESELLALQTKLETLSNQnsdckqhIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLN 507
Cdd:COG1196 294 LAE-----LARLEQDIARLEERRRELEERLEELEEE-------LAELEEELEELEEELEELEEELEEAEEELEEAEAELA 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 508 KKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLE 587
Cdd:COG1196 362 EAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 588 EALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAG---LKRDSKL 664
Cdd:COG1196 442 EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKaalLLAGLRG 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 665 KSLEIAIEQKKEEC-----------------NKLEAQLKKQAEQLFNQMYNPAHNIEDDSRMNPEFADRLKQ---LDKEA 724
Cdd:COG1196 522 LAGAVAVLIGVEAAyeaaleaalaaalqnivVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALArgaIGAAV 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 725 SYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKK-----VANLKYNQQLEKKKNAQLLEEVRRRED 799
Cdd:COG1196 602 DLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVtlegeGGSAGGSLTGGSRRELLAALLEAEAEL 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 800 SMVDNSQHLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIA 879
Cdd:COG1196 682 EELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD 761
|
570 580
....*....|....*....|....*.
gi 1907100919 880 LLELsaskkkktQEEVMALKREKDRL 905
Cdd:COG1196 762 LEEL--------ERELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
433-912 |
4.41e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 86.91 E-value: 4.41e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 433 KTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQ 512
Cdd:COG1196 252 EAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 513 LQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSE 592
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 593 KERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIE 672
Cdd:COG1196 412 LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 673 QKkeecnKLEAQLKKQAEQlFNQMYNPAHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKA-QAEVDRLLEILKEVENE 751
Cdd:COG1196 492 RL-----LLLLEAEADYEG-FLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAAlQNIVVEDDEVAAAAIEY 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 752 KNDKDKKIAELERHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQIEEL-----------MNALEKT 820
Cdd:COG1196 566 LKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLvaarleaalrrAVTLAGR 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 821 RQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKR 900
Cdd:COG1196 646 LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEA 725
|
490
....*....|..
gi 1907100919 901 EKDRLVHQLKQQ 912
Cdd:COG1196 726 LEEQLEAEREEL 737
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
140-776 |
8.03e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 86.26 E-value: 8.03e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 140 RQVRDSTMLDLQAQLKELQRENDLLRKELDIKDSKLGSSMNSIK--TFWSPELKKERVLRKEEAARMSV----------- 206
Cdd:TIGR02168 276 VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEelEAQLEELESKLDELAEELAELEEkleelkeeles 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 207 LKEQMRVSHEENQHLQLTIQALQDELRTQR-DLNHLLQQESGNRGaehfTIELTEENFRRLQAEHDRQAKELFLLRKTLE 285
Cdd:TIGR02168 356 LEAELEELEAELEELESRLEELEEQLETLRsKVAQLELQIASLNN----EIERLEARLERLEDRRERLQQEIEELLKKLE 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 286 EMELriETQKQTLNARDESIKKLLEMLQS--------KGLPSKSLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLR 357
Cdd:TIGR02168 432 EAEL--KELQAELEELEEELEELQEELERleealeelREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVK 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 358 EELHRRSQL-----------QPEPAKTKALQTVIE------------------------------------MKDTKIASL 390
Cdd:TIGR02168 510 ALLKNQSGLsgilgvlseliSVDEGYEAAIEAALGgrlqavvvenlnaakkaiaflkqnelgrvtflpldsIKGTEIQGN 589
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 391 ERNIRDLEDEVQMLKAN-----------------GVLNTEDREEEIKQIEVYKSHSKFM--------------------- 432
Cdd:TIGR02168 590 DREILKNIEGFLGVAKDlvkfdpklrkalsyllgGVLVVDDLDNALELAKKLRPGYRIVtldgdlvrpggvitggsaktn 669
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 433 ------KTKIDQLKQELSKKESELLALQTKLETLSNQNSDckqhievLKESLTAKEQRAAILQTEVDALRLRLEEKESFL 506
Cdd:TIGR02168 670 ssilerRREIEELEEKIEELEEKIAELEKALAELRKELEE-------LEEELEQLRKELEELSRQISALRKDLARLEAEV 742
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 507 NKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATL 586
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 587 EEALSEKERIIERLKEQRERDD---RERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSK 663
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEeqiEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE 902
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 664 LKSLE---IAIEQKKEECNKLEAQLKKQAEQLFNQMYNPAHNIEDDSRMNPEFADRLKQ-LDKEASYYRDECGKAQAEVD 739
Cdd:TIGR02168 903 LRELEskrSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENkIEDDEEEARRRLKRLENKIK 982
|
730 740 750
....*....|....*....|....*....|....*..
gi 1907100919 740 RLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANL 776
Cdd:TIGR02168 983 ELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETL 1019
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
189-883 |
9.37e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.80 E-value: 9.37e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 189 ELKKErvlrkEEAARMSVLKEQMRVSHEENQHLQLTIQALQDELRTQRDLNHLLQQEsgnrgaehftIELTEENFRRLQA 268
Cdd:TIGR02168 217 ELKAE-----LRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEK----------LEELRLEVSELEE 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 269 EHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGlpsKSLEDDNERTRRMAEAESQVSHLEVILDQ 348
Cdd:TIGR02168 282 EIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELE---SKLDELAEELAELEEKLEELKEELESLEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 349 KEKENIHLREELHRRSQlqpepaktkALQTVIEMKDTKIASLERNIRDLEDEVQMLKANgvLNTEDREEEIKQIEVYKSH 428
Cdd:TIGR02168 359 ELEELEAELEELESRLE---------ELEEQLETLRSKVAQLELQIASLNNEIERLEAR--LERLEDRRERLQQEIEELL 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 429 SKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFlnk 508
Cdd:TIGR02168 428 KKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGF--- 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 509 kTKQLQDLTEEKGTLAGEIRDMKDMLEVKER-------------------------------------KINVL------- 544
Cdd:TIGR02168 505 -SEGVKALLKNQSGLSGILGVLSELISVDEGyeaaieaalggrlqavvvenlnaakkaiaflkqnelgRVTFLpldsikg 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 545 QKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALA------TLEEALS------EKERII--------------- 597
Cdd:TIGR02168 584 TEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGgvlvvdDLDNALElakklrPGYRIVtldgdlvrpggvitg 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 598 -------ERLKEQRERDD-RERLEEIESfrkENKDLKEKVNALQAELTEKESSLidlkehasslasaglkrdSKLKSLEI 669
Cdd:TIGR02168 664 gsaktnsSILERRREIEElEEKIEELEE---KIAELEKALAELRKELEELEEEL------------------EQLRKELE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 670 AIEQKKEECNKLEAQLKKQAEQLFNQMYNPAHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVE 749
Cdd:TIGR02168 723 ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 750 NEKNDKDKKIAELERHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSqhLQIEELMNALEKTRQELDATKA 829
Cdd:TIGR02168 803 EALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA--AEIEELEELIEELESELEALLN 880
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....
gi 1907100919 830 RLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALLEL 883
Cdd:TIGR02168 881 ERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL 934
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
150-776 |
1.61e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.03 E-value: 1.61e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 150 LQAQLKELQRENDLLRKELDIKDSKLGSSMNSIktfwsPELKKERVLRKEE----AARMSVLKEQMRVSHEENQHLQLTI 225
Cdd:TIGR02168 244 LQEELKEAEEELEELTAELQELEEKLEELRLEV-----SELEEEIEELQKElyalANEISRLEQQKQILRERLANLERQL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 226 QALQDELRTQRDLNHLLQQESGNRGAEhftIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIET----------QK 295
Cdd:TIGR02168 319 EELEAQLEELESKLDELAEELAELEEK---LEELKEELESLEAELEELEAELEELESRLEELEEQLETlrskvaqlelQI 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 296 QTLNARDESIKKLLEMLQS---KGLPSKSLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELHR-RSQLQPEPA 371
Cdd:TIGR02168 396 ASLNNEIERLEARLERLEDrreRLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEElREELEEAEQ 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 372 KTKALQTVIEMKDTKIASLERNIRDLEDEVQMLKA--------NGVLN----------------------------TEDR 415
Cdd:TIGR02168 476 ALDAAERELAQLQARLDSLERLQENLEGFSEGVKAllknqsglSGILGvlselisvdegyeaaieaalggrlqavvVENL 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 416 EEEIKQIEVYKSHSK----------FMKTKIDQLKQELSKKESELLALQTKLETLSNQNS--------------DCKQHI 471
Cdd:TIGR02168 556 NAAKKAIAFLKQNELgrvtflpldsIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRkalsyllggvlvvdDLDNAL 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 472 EVLKE-------------------SLT--AKEQRAAIL--QTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIR 528
Cdd:TIGR02168 636 ELAKKlrpgyrivtldgdlvrpggVITggSAKTNSSILerRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELE 715
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 529 DMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDD 608
Cdd:TIGR02168 716 QLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 609 RERL---EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQL 685
Cdd:TIGR02168 796 EELKalrEALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEL 875
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 686 KK----------QAEQLFNQMYNPAHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKE-------- 747
Cdd:TIGR02168 876 EAllnerasleeALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEeysltlee 955
|
730 740
....*....|....*....|....*....
gi 1907100919 748 VENEKNDKDKKIAELERHMKDQNKKVANL 776
Cdd:TIGR02168 956 AEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
146-911 |
1.01e-14 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 79.39 E-value: 1.01e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 146 TMLDLQAQLKELQRENDLL----RKELDIKDSKLGSSMNSIKtfwspELKKERVLRKEEAARMSVLKEQMRvsheenqHL 221
Cdd:pfam15921 111 SVIDLQTKLQEMQMERDAMadirRRESQSQEDLRNQLQNTVH-----ELEAAKCLKEDMLEDSNTQIEQLR-------KM 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 222 QLTIQALQDELRTqrdLNHLLQQESGNRGAEHFTieLTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNAr 301
Cdd:pfam15921 179 MLSHEGVLQEIRS---ILVDFEEASGKKIYEHDS--MSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKS- 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 302 dESIKKLLEMLQSKGLPSKSLEDDNE-----RTRRMAEAESQV----SHLEVILDQKEKENI----HLREELHRRSQLQP 368
Cdd:pfam15921 253 -ESQNKIELLLQQHQDRIEQLISEHEveitgLTEKASSARSQAnsiqSQLEIIQEQARNQNSmymrQLSDLESTVSQLRS 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 369 EPAKTKAL----------QTVIEMKDTKIASLERN-----IRDLEDEVQMLKAngvlnteDREEEIKQIEVYKSHSKFM- 432
Cdd:pfam15921 332 ELREAKRMyedkieelekQLVLANSELTEARTERDqfsqeSGNLDDQLQKLLA-------DLHKREKELSLEKEQNKRLw 404
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 433 ------KTKIDQLKQELSKKESELLALQTKLETLsnqNSDCKQHIEVLKESLTAKEQRAAilqtEVDALRLRLEEKESFL 506
Cdd:pfam15921 405 drdtgnSITIDHLRRELDDRNMEVQRLEALLKAM---KSECQGQMERQMAAIQGKNESLE----KVSSLTAQLESTKEML 477
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 507 NKktkQLQDLTEEKGTLAGEIRDMKDM---LEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQtdssNTDTAL 583
Cdd:pfam15921 478 RK---VVEELTAKKMTLESSERTVSDLtasLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLR----NVQTEC 550
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 584 ATLEEALSEKERIIERLKEQrerddrerleeIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSK 663
Cdd:pfam15921 551 EALKLQMAEKDKVIEILRQQ-----------IENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAK 619
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 664 LKSLEIAIeqkkeecnkleAQLKKQAEQLFNQMYNPAHNIEDdsrmnpefadrLKQldkeasyyrdecgkaqaEVDRLLE 743
Cdd:pfam15921 620 IRELEARV-----------SDLELEKVKLVNAGSERLRAVKD-----------IKQ-----------------ERDQLLN 660
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 744 ILKEVENEKNDKDKKIAELERHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQHlqieeLMNALEKTRQE 823
Cdd:pfam15921 661 EVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGH-----AMKVAMGMQKQ 735
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 824 LDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEaLLAAISEKDANIALLELSASKKKKTQEEVMALKREKD 903
Cdd:pfam15921 736 ITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQE-LSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALD 814
|
....*...
gi 1907100919 904 RLVHQLKQ 911
Cdd:pfam15921 815 KASLQFAE 822
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
386-861 |
1.74e-14 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 78.16 E-value: 1.74e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 386 KIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEVYKSHskfmKTKIDQLKQELSKKESELLALQTKLETLSNQNS 465
Cdd:PRK02224 207 RLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEER----REELETLEAEIEDLRETIAETEREREELAEEVR 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 466 DCKQHIEVLKESLT--------------AKEQRAAILQTEVDALRLRLEEKESFLNKKTKQL--------------QDLT 517
Cdd:PRK02224 283 DLRERLEELEEERDdllaeaglddadaeAVEARREELEDRDEELRDRLEECRVAAQAHNEEAeslredaddleeraEELR 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 518 EEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERII 597
Cdd:PRK02224 363 EEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERV 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 598 ERLKEQRE--------------------RDDRERLEEIES----FRKENKDLKEKVNALQaELTEKESSLIDLKEHASSL 653
Cdd:PRK02224 443 EEAEALLEagkcpecgqpvegsphvetiEEDRERVEELEAeledLEEEVEEVEERLERAE-DLVEAEDRIERLEERREDL 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 654 ASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKQAEQlfnqmynpAHNIEDDSRmnpEFADRLKQLDKEasyyRDECGK 733
Cdd:PRK02224 522 EELIAERRETIEEKRERAEELRERAAELEAEAEEKREA--------AAEAEEEAE---EAREEVAELNSK----LAELKE 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 734 AQAEVDRLLEILKEVEN------EKNDKDKKIAELERHMKDQNKKVANLKynQQLEKKKNAQLLEEVRRREDSMVDnsqh 807
Cdd:PRK02224 587 RIESLERIRTLLAAIADaedeieRLREKREALAELNDERRERLAEKRERK--RELEAEFDEARIEEAREDKERAEE---- 660
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 1907100919 808 lQIEELMNALEKTRQELDATKARLASTQQSLAEkeahLANLRiERRKQLEEILE 861
Cdd:PRK02224 661 -YLEQVEEKLDELREERDDLQAEIGAVENELEE----LEELR-ERREALENRVE 708
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
331-861 |
1.78e-14 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 78.16 E-value: 1.78e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 331 RMAEAESQVSHLEVILDQKEKENIHLREELhrrsqlqpepaktKALQTVI---EMKDTKIASLERNIRDLEDEVQmlkan 407
Cdd:PRK02224 207 RLNGLESELAELDEEIERYEEQREQARETR-------------DEADEVLeehEERREELETLEAEIEDLRETIA----- 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 408 gvlNTEDREEEIK-QIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAA 486
Cdd:PRK02224 269 ---ETEREREELAeEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 487 ILQTEVDALRLRLEEKEsflnkktkqlqdltEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLK 566
Cdd:PRK02224 346 SLREDADDLEERAEELR--------------EEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAE 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 567 DRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRE--------------------RDDRERLEEIES----FRKEN 622
Cdd:PRK02224 412 DFLEELREERDELREREAELEATLRTARERVEEAEALLEagkcpecgqpvegsphvetiEEDRERVEELEAeledLEEEV 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 623 KDLKEKVNALQaELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKQAEQLFNQMYNPAHN 702
Cdd:PRK02224 492 EEVEERLERAE-DLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEA 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 703 IEDDSRMN---PEFADRLKQLDKEASYY--RDECGKAQAEVDRLLEILKEVENEKND----KDKKIAELERHMKD----- 768
Cdd:PRK02224 571 REEVAELNsklAELKERIESLERIRTLLaaIADAEDEIERLREKREALAELNDERRErlaeKRERKRELEAEFDEariee 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 769 -QNKKVANLKYNQQLEKKknaqlLEEVRRREDS------MVDNSqhlqIEELmNALEKTRQELDATKARLASTQQSLAEK 841
Cdd:PRK02224 651 aREDKERAEEYLEQVEEK-----LDELREERDDlqaeigAVENE----LEEL-EELRERREALENRVEALEALYDEAEEL 720
|
570 580
....*....|....*....|
gi 1907100919 842 EAHLANLRIERRKQLEEILE 861
Cdd:PRK02224 721 ESMYGDLRAELRQRNVETLE 740
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
488-870 |
3.95e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 77.42 E-value: 3.95e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 488 LQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIrdmkdmlEVKERKINVLQKKIENLQEQLRDKDKQLTNLKD 567
Cdd:TIGR02169 686 LKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEI-------EQLEQEEEKLKERLEELEEDLSSLEQEIENVKS 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 568 RvkslqtdssntdtaLATLEEALSEKERIIERLKEQRER-DDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLidl 646
Cdd:TIGR02169 759 E--------------LKELEARIEELEEDLHKLEEALNDlEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKL--- 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 647 kehasslasagLKRDSKLKSLEIAIEQKKEECNKLEAQLKKQAEQlfnqmynpahnIEDDSRMNPEFADRLKQLDKEASY 726
Cdd:TIGR02169 822 -----------NRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKE-----------IENLNGKKEELEEELEELEAALRD 879
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 727 YRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQ 806
Cdd:TIGR02169 880 LESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAE 959
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907100919 807 HLQIEELMNALE----KTRQELDATKARLastqQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAA 870
Cdd:TIGR02169 960 LQRVEEEIRALEpvnmLAIQEYEEVLKRL----DELKEKRAKLEEERKAILERIEEYEKKKREVFMEA 1023
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
387-693 |
4.32e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.02 E-value: 4.32e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 387 IASLERNIRDLEDEVQmlKANGVLNTEDREEEIkQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQnsd 466
Cdd:TIGR02168 195 LNELERQLKSLERQAE--KAERYKELKAELREL-ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEK--- 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 467 ckqhIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKER------- 539
Cdd:TIGR02168 269 ----LEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEelaelee 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 540 KINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFR 619
Cdd:TIGR02168 345 KLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIE 424
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907100919 620 KENKDLKE-KVNALQAELTEKESSLIDLKEHASSLASAglkrdskLKSLEIAIEQKKEECNKLEAQLKKQAEQLF 693
Cdd:TIGR02168 425 ELLKKLEEaELKELQAELEELEEELEELQEELERLEEA-------LEELREELEEAEQALDAAERELAQLQARLD 492
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
250-910 |
1.25e-13 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 75.54 E-value: 1.25e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 250 GAEHFTIELTEENF------RRLQAEHDRQAKELFLLRKT-------LEEMEL---------RIETQKQTlNARDESIKK 307
Cdd:pfam15921 72 GKEHIERVLEEYSHqvkdlqRRLNESNELHEKQKFYLRQSvidlqtkLQEMQMerdamadirRRESQSQE-DLRNQLQNT 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 308 LLEMLQSKGLPSKSLEDDN---ERTRRMAEAESQVSH--LEVILDQKEKENIHLREelHRRSQLQPEPAKTKALQTVIEM 382
Cdd:pfam15921 151 VHELEAAKCLKEDMLEDSNtqiEQLRKMMLSHEGVLQeiRSILVDFEEASGKKIYE--HDSMSTMHFRSLGSAISKILRE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 383 KDTKIASLERNIRDLEDEVQMLKAngvlntedreEEIKQIEVykshskFMKTKIDQLKQELSKKESELLALQTKLETLSN 462
Cdd:pfam15921 229 LDTEISYLKGRIFPVEDQLEALKS----------ESQNKIEL------LLQQHQDRIEQLISEHEVEITGLTEKASSARS 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 463 QNSDCKQHIEVLKESltAKEQRAAILqtevdalrlrleekesflnkktKQLQDLTEEKGTLAGEIRDMKDMLEvkerkin 542
Cdd:pfam15921 293 QANSIQSQLEIIQEQ--ARNQNSMYM----------------------RQLSDLESTVSQLRSELREAKRMYE------- 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 543 vlqKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRER---DDRERLEEIESFR 619
Cdd:pfam15921 342 ---DKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRlwdRDTGNSITIDHLR 418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 620 KENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKQAEQLfnqmynp 699
Cdd:pfam15921 419 RELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTL------- 491
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 700 ahniEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEkndkdkkiaelERHMKDQNKKVANLKYn 779
Cdd:pfam15921 492 ----ESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNE-----------GDHLRNVQTECEALKL- 555
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 780 QQLEKKKNAQLLEEvrrredsmvdnsqhlQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEI 859
Cdd:pfam15921 556 QMAEKDKVIEILRQ---------------QIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKI 620
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 1907100919 860 LEMkqeallaaisekDANIALLELSASKKKKTQEE----VMALKREKDRLVHQLK 910
Cdd:pfam15921 621 REL------------EARVSDLELEKVKLVNAGSErlraVKDIKQERDQLLNEVK 663
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
149-773 |
1.84e-12 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 71.59 E-value: 1.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 149 DLQAQLKELQRENDLLRKELDIKDSKLGSSMN--SIKTFWSPELKKERVLRKEEAARMSVLKEQMRVSHEENQHLQLTIQ 226
Cdd:TIGR04523 163 DLKKQKEELENELNLLEKEKLNIQKNIDKIKNklLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEIN 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 227 ALQDEL-RTQRDLNHLLQQESGNRgaehftielteENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNArdESI 305
Cdd:TIGR04523 243 EKTTEIsNTQTQLNQLKDEQNKIK-----------KQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQ--DWN 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 306 KKLLEMLQSKGLPSKSLEDD-NERTRRMAEAESQVSHLEVILDQKEKENIHLREELHRRSQlqpepaKTKALQTVIEMKD 384
Cdd:TIGR04523 310 KELKSELKNQEKKLEEIQNQiSQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQN------EIEKLKKENQSYK 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 385 TKIASLERNIRDLEDEVQMLKangvlntEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELlalqtklETLSNQN 464
Cdd:TIGR04523 384 QEIKNLESQINDLESKIQNQE-------KLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEI-------KDLTNQD 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 465 SDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDmlevkerKINVL 544
Cdd:TIGR04523 450 SVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTK-------KISSL 522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 545 QKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDtalatLEEALSEKERIIERLKEQRERDDRERLEeiesFRKENKD 624
Cdd:TIGR04523 523 KEKIEKLESEKKEKESKISDLEDELNKDDFELKKEN-----LEKEIDEKNKEIEELKQTQKSLKKKQEE----KQELIDQ 593
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 625 LKEKVNALQAELTEKESSLIDLKEHASSLAsaglKRDSKLKSLEIAIEQKKEECNKLEAQLKKQAEQLFNQMYNPAHNIE 704
Cdd:TIGR04523 594 KEKEKKDLIKEIEEKEKKISSLEKELEKAK----KENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIK 669
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907100919 705 DDSRMNPEFADRLKQLDKEASYYRDECGKAQ---AEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKV 773
Cdd:TIGR04523 670 ESKTKIDDIIELMKDWLKELSLHYKKYITRMiriKDLPKLEEKYKEIEKELKKLDEFSKELENIIKNFNKKF 741
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
149-901 |
1.90e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 71.64 E-value: 1.90e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 149 DLQAQLKELQRENDLLRKELD---IKDSKLGSSMNSIKTFWSPELKKERVLRKEEAARmsvLKEQMRVSHEENQHLQLTI 225
Cdd:TIGR02169 234 ALERQKEAIERQLASLEEELEkltEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLR---VKEKIGELEAEIASLERSI 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 226 QALQDELRTQRDLNHLLQQESGNRGAEH--FTIELTEENFRR--LQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNAR 301
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEAEIDKLLAEIeeLEREIEEERKRRdkLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDY 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 302 DESIKKLlemlqskglpsksleddnerTRRMAEAESQVSHLEVILDQKEKENIHLREELHRRSqlqpepAKTKALQTVIE 381
Cdd:TIGR02169 391 REKLEKL--------------------KREINELKRELDRLQEELQRLSEELADLNAAIAGIE------AKINELEEEKE 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 382 MKDTKIASLERNIRDLEDEVqmlkangvlntEDREEEIKQIevykshskfmKTKIDQLKQELSKKESELLALQTKLETLS 461
Cdd:TIGR02169 445 DKALEIKKQEWKLEQLAADL-----------SKYEQELYDL----------KEEYDRVEKELSKLQRELAEAEAQARASE 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 462 NQNSDCKQHIEVLKESLTA-----------KEQRAAILQTEVDAlRLRLEEKESFLNKKtKQLQDLTEEKGTLAG--EIR 528
Cdd:TIGR02169 504 ERVRGGRAVEEVLKASIQGvhgtvaqlgsvGERYATAIEVAAGN-RLNNVVVEDDAVAK-EAIELLKRRKAGRATflPLN 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 529 DMKDMLEVKERkinVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTA--------LATLEEALSEKERII--- 597
Cdd:TIGR02169 582 KMRDERRDLSI---LSEDGVIGFAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAArrlmgkyrMVTLEGELFEKSGAMtgg 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 598 ERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLAsaglkrdsklKSLEiAIEQKKEE 677
Cdd:TIGR02169 659 SRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDAS----------RKIG-EIEKEIEQ 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 678 CNKLEAQLKKQAEQLFNQMYNPAHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRllEILKEVENEKNDKDK 757
Cdd:TIGR02169 728 LEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH--SRIPEIQAELSKLEE 805
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 758 KIAELERHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQhlQIEELMNALEKTRQELDATKARLAstqqS 837
Cdd:TIGR02169 806 EVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEK--EIENLNGKKEELEEELEELEAALR----D 879
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907100919 838 LAEKEAHLANLRIERRKQLEEiLEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKRE 901
Cdd:TIGR02169 880 LESRLGDLKKERDELEAQLRE-LERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE 942
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
476-692 |
1.99e-12 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 70.18 E-value: 1.99e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 476 ESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQL 555
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 556 rdkDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRerddRERLEEIESFRKENKDLKEKVNALQAE 635
Cdd:COG4942 100 ---EAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLA----PARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1907100919 636 LTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEEcnklEAQLKKQAEQL 692
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAE----LAELQQEAEEL 225
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
224-647 |
2.65e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 71.22 E-value: 2.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 224 TIQALQDELRTQRD-LNHLLQQESGNRGAEHFTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARD 302
Cdd:PRK02224 311 AVEARREELEDRDEeLRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELE 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 303 ESIKKLLEMLQSKGLPSKSLEDDNERTR-RMAEAESQVSHLEVILdQKEKENIHLREELHRRSQLqPE---PAKTKALQT 378
Cdd:PRK02224 391 EEIEELRERFGDAPVDLGNAEDFLEELReERDELREREAELEATL-RTARERVEEAEALLEAGKC-PEcgqPVEGSPHVE 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 379 VIEMKDTKIASLERNIRDLEDEVqmlkangvlntEDREEEIKQIEvykshskfmktkidqlkqELSKKESELLALQTKLE 458
Cdd:PRK02224 469 TIEEDRERVEELEAELEDLEEEV-----------EEVEERLERAE------------------DLVEAEDRIERLEERRE 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 459 TLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGE------IRDMKD 532
Cdd:PRK02224 520 DLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERieslerIRTLLA 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 533 MLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQT--DSSNTDTALATLEEALSEKERIIERLKEQRERDD-- 608
Cdd:PRK02224 600 AIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAefDEARIEEAREDKERAEEYLEQVEEKLDELREERDdl 679
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 1907100919 609 -------RERLEEIESFRKENKDLKEKVNALQA---ELTEKESSLIDLK 647
Cdd:PRK02224 680 qaeigavENELEELEELRERREALENRVEALEAlydEAEELESMYGDLR 728
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
435-781 |
4.16e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.86 E-value: 4.16e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 435 KIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEvLKESLTAKEqrAAILQTEVDALRLRLEEKESFLNKKTKQLQ 514
Cdd:TIGR02168 180 KLERTRENLDRLEDILNELERQLKSLERQAEKAERYKE-LKAELRELE--LALLVLRLEELREELEELQEELKEAEEELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 515 DLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDssntdtalatleeaLSEKE 594
Cdd:TIGR02168 257 ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQ--------------LEELE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 595 RIIERLKEQRERDdRERLEEIEsfrKENKDLKEKVNALQAELTEK-------ESSLIDLKEHASSLASAGLKRDSKLKSL 667
Cdd:TIGR02168 323 AQLEELESKLDEL-AEELAELE---EKLEELKEELESLEAELEELeaeleelESRLEELEEQLETLRSKVAQLELQIASL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 668 EIAIEQKKEECNKLEAQLKKQAEQLFNQMYNPAHNIEDDSRMNPEFADR-LKQLDKEASYYRDECGKAQAEVDRLLEILK 746
Cdd:TIGR02168 399 NNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEeLEELQEELERLEEALEELREELEEAEQALD 478
|
330 340 350
....*....|....*....|....*....|....*...
gi 1907100919 747 EVENEKNDKDKKIAELERHM---KDQNKKVANLKYNQQ 781
Cdd:TIGR02168 479 AAERELAQLQARLDSLERLQenlEGFSEGVKALLKNQS 516
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
220-873 |
2.69e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 67.78 E-value: 2.69e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 220 HLQLTIQALQDELRTQRDLNHLLQQESGNRGAEHFTIELTEENFRRLQAEHD---RQAKELFLLRKTLEEMELRIETQKQ 296
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEkleKEVKELEELKEEIEELEKELESLEG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 297 TLNARDESIKKLLEMLQSKGLPSKSLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELHRRSQlqpepaktkal 376
Cdd:PRK03918 253 SKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEE----------- 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 377 qtviemkdtKIASLERNIRDLEDEVQMLKangvlNTEDREEEI-KQIEVYKshskfmktKIDQLKQELSKKESELLALQT 455
Cdd:PRK03918 322 ---------EINGIEERIKELEEKEERLE-----ELKKKLKELeKRLEELE--------ERHELYEEAKAKKEELERLKK 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 456 KLETLSnqnsdckqhIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDmlE 535
Cdd:PRK03918 380 RLTGLT---------PEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTE--E 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 536 VKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNtdtalatlEEALSEKERIIERLKEQRERDDRERLEEI 615
Cdd:PRK03918 449 HRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKK--------ESELIKLKELAEQLKELEEKLKKYNLEEL 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 616 ESFRKENKDLKEKVNALQAELTEKESSLIDLKEHasslasaglkrDSKLKSLEIAIEQKKEECNKLEAQLKKQAEQLFNq 695
Cdd:PRK03918 521 EKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEEL-----------KKKLAELEKKLDELEEELAELLKELEELGFESVE- 588
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 696 mynpahnieddsrmnpEFADRLKQLDKeasYYRD--ECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKV 773
Cdd:PRK03918 589 ----------------ELEERLKELEP---FYNEylELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKEL 649
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 774 ANLKYNQQLEKKKNAQLLEEVRRREDSMVDNsqhlQIEELMNALEKTRQELDATKARLASTQQslAEKEAHLANLRIERR 853
Cdd:PRK03918 650 EELEKKYSEEEYEELREEYLELSRELAGLRA----ELEELEKRREEIKKTLEKLKEELEEREK--AKKELEKLEKALERV 723
|
650 660
....*....|....*....|.
gi 1907100919 854 KQL-EEILEMKQEALLAAISE 873
Cdd:PRK03918 724 EELrEKVKKYKALLKERALSK 744
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
256-639 |
4.22e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.39 E-value: 4.22e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 256 IELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLPSKSLEDDNERTRRmaEA 335
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSK--EL 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 336 ESQVSHLEVILDQKEKENIHLREELHRRSQLQPEPAKTKALqtviemkdtkIASLERNIRDLEDEVQMLKANGVLNTEDR 415
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE----------LKALREALDELRAELTLLNEEAANLRERL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 416 EEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQnsdckqhIEVLKESLTAKEQRAAILQTEVDAL 495
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESE-------LEALLNERASLEEALALLRSELEEL 899
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 496 RLRLEEKESFLNKKTKQLQDLTEEKGTLageirdmkdmlevkERKINVLQKKIENLQEQLRDKDK-QLTNLKDRVKSLQT 574
Cdd:TIGR02168 900 SEELRELESKRSELRRELEELREKLAQL--------------ELRLEGLEVRIDNLQERLSEEYSlTLEEAEALENKIED 965
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907100919 575 DSSNTDTALATLEEALSEKERI----IERLKEQRERDDrERLEEIESFRKENKDLKEKVNALQAELTEK 639
Cdd:TIGR02168 966 DEEEARRRLKRLENKIKELGPVnlaaIEEYEELKERYD-FLTAQKEDLTEAKETLEEAIEEIDREARER 1033
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
191-918 |
4.67e-11 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 67.30 E-value: 4.67e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 191 KKERVLRKEEAARMSVLKEQMRVSHEENQHLQLTIQAlQDELRTQRdlnhlLQQESGNRGAEHFTIELTEENFRRLQAEH 270
Cdd:pfam02463 170 KKKEALKKLIEETENLAELIIDLEELKLQELKLKEQA-KKALEYYQ-----LKEKLELEEEYLLYLDYLKLNEERIDLLQ 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 271 DRQAKELFLLRKTLEEMELRIETQKQTLNARDEsIKKLLEMLQSKGLPSKSLEDDNERTRRMAEAESQVSHLEVILDQKE 350
Cdd:pfam02463 244 ELLRDEQEEIESSKQEIEKEEEKLAQVLKENKE-EEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 351 KENIHLREELHRRSQLQPEPAKtKALQTVIEMKDTKIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEVYKSHSK 430
Cdd:pfam02463 323 KKKAEKELKKEKEEIEELEKEL-KELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKS 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 431 FMKTKIDQLKQELSKKESELLALQTKLETLsnqnsdckqhIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKT 510
Cdd:pfam02463 402 EEEKEAQLLLELARQLEDLLKEEKKEELEI----------LEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSE 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 511 KQLQ--DLTEEKGTLAGEIRDMKDMLEV-KERKINVLQKKIENLQEQLR--------------------DKDKQLTNLKD 567
Cdd:pfam02463 472 DLLKetQLVKLQEQLELLLSRQKLEERSqKESKARSGLKVLLALIKDGVggriisahgrlgdlgvavenYKVAISTAVIV 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 568 RVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLK 647
Cdd:pfam02463 552 EVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKD 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 648 EHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKQAEQLFNQMYNpahNIEDDSRMNPEFADRLKQLDKEASYY 727
Cdd:pfam02463 632 TELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQ---EKAESELAKEEILRRQLEIKKKEQRE 708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 728 RDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRR-REDSMVDNSQ 806
Cdd:pfam02463 709 KEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAeEREKTEKLKV 788
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 807 HLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALLELSAS 886
Cdd:pfam02463 789 EEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEEL 868
|
730 740 750
....*....|....*....|....*....|..
gi 1907100919 887 KKKKTQEEVMALKREKDRLVHQLKQQVYRSRK 918
Cdd:pfam02463 869 LQELLLKEEELEEQKLKDELESKEEKEKEEKK 900
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
189-924 |
4.81e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.47 E-value: 4.81e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 189 ELKKERVLRKEEAARMSVLK--EQMRVSHEENQHLQLTIQALQDELRTQRDLNHLLQQESGNRGAEHFTIELTEENFRRL 266
Cdd:PTZ00121 1211 ERKAEEARKAEDAKKAEAVKkaEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKK 1290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 267 QAEHDRQAKElfllRKTLEEMELRIETQKQT--LNARDESIKKLLEMLQSKGLPSKSLEDDNERTRRMAEAESQVSHLEV 344
Cdd:PTZ00121 1291 KADEAKKAEE----KKKADEAKKKAEEAKKAdeAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKA 1366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 345 ILDQKEKENIHLR-EELHRRSQ--LQPEPAKTKALQTVIEMKDTKIASLERNIRD-----LEDEVQMLKANGVLNTEDRE 416
Cdd:PTZ00121 1367 EAAEKKKEEAKKKaDAAKKKAEekKKADEAKKKAEEDKKKADELKKAAAAKKKADeakkkAEEKKKADEAKKKAEEAKKA 1446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 417 EEIKQIEVYKSHSKFMKTKIDQLKQ--ELSKKESEllalQTKLETLSNQNSDCKQHIEVLKESLTAK----EQRAAILQT 490
Cdd:PTZ00121 1447 DEAKKKAEEAKKAEEAKKKAEEAKKadEAKKKAEE----AKKADEAKKKAEEAKKKADEAKKAAEAKkkadEAKKAEEAK 1522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 491 EVDALRlRLEEKesflnKKTKQLQDLTEEKGtlAGEIRDMKDMLEVKERKiNVLQKKIENLQEQLRDKDKQLTNLKDRVK 570
Cdd:PTZ00121 1523 KADEAK-KAEEA-----KKADEAKKAEEKKK--ADELKKAEELKKAEEKK-KAEEAKKAEEDKNMALRKAEEAKKAEEAR 1593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 571 SLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHA 650
Cdd:PTZ00121 1594 IEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEED 1673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 651 SSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKQAEQLfnqmyNPAHNIEDDSRMNPEFADRLKQLDKEASYYRDE 730
Cdd:PTZ00121 1674 KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEK-----KKAEELKKAEEENKIKAEEAKKEAEEDKKKAEE 1748
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 731 CGKAQAEVDRLLEILKEVENEKNDKDK-KIAELERHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQHL- 808
Cdd:PTZ00121 1749 AKKDEEEKKKIAHLKKEEEKKAEEIRKeKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMe 1828
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 809 --QIEELMNALEKTRQELDAT---KARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQeallaaISEKDANIALLEL 883
Cdd:PTZ00121 1829 dsAIKEVADSKNMQLEEADAFekhKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADE------IEKIDKDDIEREI 1902
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 1907100919 884 SASKKKKTQEEVMALKREKD----RLVHQLKQQVYRSRKHPPCSN 924
Cdd:PTZ00121 1903 PNNNMAGKNNDIIDDKLDKDeyikRDAEETREEIIKISKKDMCIN 1947
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
198-827 |
1.89e-10 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 65.13 E-value: 1.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 198 KEEAARMSVLKE--QMRVSHEENQHLQLTIQALQDElRTQRDLNHLLQQESGNRGAEHFTIELTEENFRRLQAEHDRQAK 275
Cdd:pfam05483 218 KEDHEKIQHLEEeyKKEINDKEKQVSLLLIQITEKE-NKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTK 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 276 ELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEmlqskglpsksleddnERTRRMAEAESQVSHLEVILDQKEKENIH 355
Cdd:pfam05483 297 ELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTE----------------EKEAQMEELNKAKAAHSFVVTEFEATTCS 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 356 LrEELHRRSQLQPEPAKTKALQTVIEmkdtkiasLERNIRDLEDEVQMLKangvlNTEDREEEIKQIEVYKSHSKFMKTK 435
Cdd:pfam05483 361 L-EELLRTEQQRLEKNEDQLKIITME--------LQKKSSELEEMTKFKN-----NKEVELEELKKILAEDEKLLDEKKQ 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 436 IDQLKQELSKKESELLALqtkLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQD 515
Cdd:pfam05483 427 FEKIAEELKGKEQELIFL---LQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKE 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 516 LTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEqlrdkdkQLTNLKDRVKSLQtdssntdtalatlEEALSEKER 595
Cdd:pfam05483 504 LTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEE-------KEMNLRDELESVR-------------EEFIQKGDE 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 596 IIERLkEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIeqkk 675
Cdd:pfam05483 564 VKCKL-DKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKV---- 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 676 eecNKLEAQLkKQAEQLFNQMYNPAHNIEDDSRMNPEfadRLKQLDKEASYYRDECGKAQAEVD-----RLLEILKEVEN 750
Cdd:pfam05483 639 ---NKLELEL-ASAKQKFEEIIDNYQKEIEDKKISEE---KLLEEVEKAKAIADEAVKLQKEIDkrcqhKIAEMVALMEK 711
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907100919 751 EKNDKDKKIAElerhmkdQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQIE-ELMNALEKTRQELDAT 827
Cdd:pfam05483 712 HKHQYDKIIEE-------RDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEkEEKEKLKMEAKENTAI 782
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
433-641 |
3.62e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 63.24 E-value: 3.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 433 KTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQ 512
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 513 LQDL------TEEKGTL-----AGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDT 581
Cdd:COG4942 106 LAELlralyrLGRQPPLalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEE 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 582 ALATLEEALSEKERIIERLKEQRERDDrerlEEIESFRKENKDLKEKVNALQAELTEKES 641
Cdd:COG4942 186 ERAALEALKAERQKLLARLEKELAELA----AELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
148-764 |
4.38e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.19 E-value: 4.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 148 LDLQAQLKELQREndLLRKELDIKDSKLGSSMNSIKtfwspELKKERVLRKEEAARMSVLKEQMRVSHEEnqhLQLTIQA 227
Cdd:COG1196 216 RELKEELKELEAE--LLLLKLRELEAELEELEAELE-----ELEAELEELEAELAELEAELEELRLELEE---LELELEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 228 LQDEL--------RTQRDLNHL---LQQESGNRGAEHFTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQ 296
Cdd:COG1196 286 AQAEEyellaelaRLEQDIARLeerRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 297 TLNARDESIKKLLEMLQSKglpsksLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELHRRSQlqpepAKTKAL 376
Cdd:COG1196 366 ALLEAEAELAEAEEELEEL------AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE-----ALAELE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 377 QTVIEMKDTKIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEVYKSHSKfmKTKIDQLKQELSKKESELLALQTK 456
Cdd:COG1196 435 EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE--AAARLLLLLEAEADYEGFLEGVKA 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 457 LETLSNQnsdCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEV 536
Cdd:COG1196 513 ALLLAGL---RGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALA 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 537 KERKINVLQKKIENLQEQLRDKDKQLTNLKDrvkSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERddRERLEEIE 616
Cdd:COG1196 590 AALARGAIGAAVDLVASDLREADARYYVLGD---TLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGG--SAGGSLTG 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 617 SFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEEcnkLEAQLKKQAEQLFNQM 696
Cdd:COG1196 665 GSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEA---LEEQLEAEREELLEEL 741
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907100919 697 YNPAHNIEDDSRMNPEFADRLKQLDKEASyyrdecgKAQAEVDRL-------LEILKEVENEKNDKDKKIAELER 764
Cdd:COG1196 742 LEEEELLEEEALEELPEPPDLEELERELE-------RLEREIEALgpvnllaIEEYEELEERYDFLSEQREDLEE 809
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
583-905 |
4.45e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.93 E-value: 4.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 583 LATLEEALSEKERIIERLKEQRERDDR------ERLEEIESFRKEnKDLKEKVNALQAELTEKESSLidlkehassLASA 656
Cdd:TIGR02169 162 IAGVAEFDRKKEKALEELEEVEENIERldliidEKRQQLERLRRE-REKAERYQALLKEKREYEGYE---------LLKE 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 657 GLKRDSKLKSLEIAIEQKKEECNKLEAQLKKQAEQLfnqmynpaHNIEDDSRmnpEFADRLKQL-DKEASYYRDECGKAQ 735
Cdd:TIGR02169 232 KEALERQKEAIERQLASLEEELEKLTEEISELEKRL--------EEIEQLLE---ELNKKIKDLgEEEQLRVKEKIGELE 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 736 AEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQhlQIEELMN 815
Cdd:TIGR02169 301 AEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRA--ELEEVDK 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 816 ALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQE------ALLAAISEKDANIALLELSASKKK 889
Cdd:TIGR02169 379 EFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAiagieaKINELEEEKEDKALEIKKQEWKLE 458
|
330
....*....|....*.
gi 1907100919 890 KTQEEVMALKREKDRL 905
Cdd:TIGR02169 459 QLAADLSKYEQELYDL 474
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
503-695 |
4.59e-10 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 62.93 E-value: 4.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 503 ESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLT-----------NLKDRVKS 571
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAeaeaeieerreELGERARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 572 LQTDSSNTDTALATLE----EALSEKERIIERLKEQrerdDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLK 647
Cdd:COG3883 95 LYRSGGSVSYLDVLLGsesfSDFLDRLSALSKIADA----DADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAK 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1907100919 648 EhasSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKQAEQLFNQ 695
Cdd:COG3883 171 A---ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAA 215
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
438-896 |
4.94e-10 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 63.63 E-value: 4.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 438 QLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQtevdaLRLRLEEKESFLNKKTKQLQDLT 517
Cdd:COG4717 78 EELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLP-----LYQELEALEAELAELPERLEELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 518 EEkgtlAGEIRDMKDMLEVKERKINVLQKKIENLQEQLR-DKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERI 596
Cdd:COG4717 153 ER----LEELRELEEELEELEAELAELQEELEELLEQLSlATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 597 IERLKEQRER-DDRERLEEIESFRKenkdLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKK 675
Cdd:COG4717 229 LEQLENELEAaALEERLKEARLLLL----IAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEA 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 676 EECNKLEAQLKKQAEQLFNQMYNPAHNIEDDSRMNPEFADRLKQLDKEASYYRDEcgKAQAEVDRLLEILKEVENEKNDK 755
Cdd:COG4717 305 EELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEEL--EEELQLEELEQEIAALLAEAGVE 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 756 DkkIAELERHMKDQNKKVAnlkynqqlEKKKNAQLLEEVRRREDSMVDNSQHLQIEELMNALEKTRQELDATKARLASTQ 835
Cdd:COG4717 383 D--EEELRAALEQAEEYQE--------LKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELR 452
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907100919 836 QSLAEKEAHLANLriERRKQLEEILEmKQEALLAAISEKDANIALLELSASKKKKTQEEVM 896
Cdd:COG4717 453 EELAELEAELEQL--EEDGELAELLQ-ELEELKAELRELAEEWAALKLALELLEEAREEYR 510
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
716-911 |
2.62e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 60.55 E-value: 2.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 716 RLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKYNQQLEKKKNAQLLEEVR 795
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 796 RREDSMVDNSQHLQIEELMNA------------LEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEiLEMK 863
Cdd:COG4942 108 ELLRALYRLGRQPPLALLLSPedfldavrrlqyLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAE-LEEE 186
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1907100919 864 QEALLAAISEKDANIALLElsaSKKKKTQEEVMALKREKDRLVHQLKQ 911
Cdd:COG4942 187 RAALEALKAERQKLLARLE---KELAELAAELAELQQEAEELEALIAR 231
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
510-911 |
2.74e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.19 E-value: 2.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 510 TKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEA 589
Cdd:TIGR04523 39 EKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQ 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 590 LSEKERIIERLKEQRERDDRER---LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKL-- 664
Cdd:TIGR04523 119 KNKLEVELNKLEKQKKENKKNIdkfLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLlk 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 665 -----------------------------KSLEIAIEQKKEECNKLEAQLKKQAEQLF----------NQMYNPAHNIED 705
Cdd:TIGR04523 199 lelllsnlkkkiqknkslesqiselkkqnNQLKDNIEKKQQEINEKTTEISNTQTQLNqlkdeqnkikKQLSEKQKELEQ 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 706 DSRMNPEFADRLKQLDKEASYYRDEcgKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLK-------- 777
Cdd:TIGR04523 279 NNKKIKELEKQLNQLKSEISDLNNQ--KEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKkeltnses 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 778 ----YNQQLEKKKNAqlLEEVRRREDSMVDNSQHL--QIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIE 851
Cdd:TIGR04523 357 enseKQRELEEKQNE--IEKLKKENQSYKQEIKNLesQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKET 434
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907100919 852 RRKQLEEI---------LEMKQEALLAAISEKDANIALLELSASKKKKTQEEvmaLKREKDRLVHQLKQ 911
Cdd:TIGR04523 435 IIKNNSEIkdltnqdsvKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQ---KQKELKSKEKELKK 500
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
456-902 |
3.78e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 60.82 E-value: 3.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 456 KLETLSNQNSDCKQHIE-VLKESLTAKEQ-RAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDM 533
Cdd:PRK02224 163 KLEEYRERASDARLGVErVLSDQRGSLDQlKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEV 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 534 LEVKERK---INVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQ----TDSSNTDTALATLEEALSEKERIIERLKEQRER 606
Cdd:PRK02224 243 LEEHEERreeLETLEAEIEDLRETIAETEREREELAEEVRDLRerleELEEERDDLLAEAGLDDADAEAVEARREELEDR 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 607 DD--RERLEE----IESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNK 680
Cdd:PRK02224 323 DEelRDRLEEcrvaAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGD 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 681 LEAQLKkqaeqlfnqmynpahNIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILK------EVENEK-- 752
Cdd:PRK02224 403 APVDLG---------------NAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKcpecgqPVEGSPhv 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 753 ---NDKDKKIAELERHMKDQNKKVANLkyNQQLEKKKNAQLLEEVRRREDSMVDNSQHLqIEELMNALEKTRQELDATKA 829
Cdd:PRK02224 468 etiEEDRERVEELEAELEDLEEEVEEV--EERLERAEDLVEAEDRIERLEERREDLEEL-IAERRETIEEKRERAEELRE 544
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907100919 830 RLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEalLAAISEKDANIALLELSASKKKKTQEEVMALkREK 902
Cdd:PRK02224 545 RAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSK--LAELKERIESLERIRTLLAAIADAEDEIERL-REK 614
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
506-916 |
4.09e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 60.85 E-value: 4.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 506 LNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQL---RDKDKQLTNLKDRVKSLQTDSSNTDTA 582
Cdd:PRK03918 174 IKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELeklEKEVKELEELKEEIEELEKELESLEGS 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 583 LATLEEALSEKERIIERLKEQRE--RDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKR 660
Cdd:PRK03918 254 KRKLEEKIRELEERIEELKKEIEelEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKEL 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 661 DSKLKSLEiAIEQKKEECNKLEAQLKKQAEQLFNQMYNPAHNIEDDSRMNPEFADRLKQLDKEASYYRDEcgkAQAEVDR 740
Cdd:PRK03918 334 EEKEERLE-ELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEE---IEEEISK 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 741 LLEILKEVENEKNDKDKKIAELE----------RHMKDQNKKVANLKYNQQL-----EKKKNAQLLEEVRRREdsmVDNS 805
Cdd:PRK03918 410 ITARIGELKKEIKELKKAIEELKkakgkcpvcgRELTEEHRKELLEEYTAELkriekELKEIEEKERKLRKEL---RELE 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 806 QHLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHlanlriERRKQLEEILEMKQEallaaISEKDANIALLELSA 885
Cdd:PRK03918 487 KVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAE------EYEKLKEKLIKLKGE-----IKSLKKELEKLEELK 555
|
410 420 430
....*....|....*....|....*....|.
gi 1907100919 886 SKKKKTQEEVMALKREKDRLVHQLKQQVYRS 916
Cdd:PRK03918 556 KKLAELEKKLDELEEELAELLKELEELGFES 586
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
330-909 |
4.63e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 60.70 E-value: 4.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 330 RRMAEAESQVSHLEVILDQKEKenihLREELHRRSQLQPEPAKTKALQtviemKDTKIASLERNIRDLEDEVQMLKAngv 409
Cdd:COG4913 242 EALEDAREQIELLEPIRELAER----YAAARERLAELEYLRAALRLWF-----AQRRLELLEAELEELRAELARLEA--- 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 410 lntedreeeikqievykshskfmktKIDQLKQELSKKESELLALQTKLETLSNQN-SDCKQHIEVLKESLTAKEQRAAIL 488
Cdd:COG4913 310 -------------------------ELERLEARLDALREELDELEAQIRGNGGDRlEQLEREIERLERELEERERRRARL 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 489 QTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKinvlqkkienLQEQLRDKDKQLTNLKDR 568
Cdd:COG4913 365 EALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRD----------LRRELRELEAEIASLERR 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 569 VKSLqtdSSNTDTALATLEEALSEKE---RIIERLKEQRERDDR-----ERL------------EEIESFRK--ENKDLK 626
Cdd:COG4913 435 KSNI---PARLLALRDALAEALGLDEaelPFVGELIEVRPEEERwrgaiERVlggfaltllvppEHYAAALRwvNRLHLR 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 627 EKVNALQAELTEKESSLIDLkeHASSLASaglkrdsKLKSLEIAIEqkkeecNKLEAQLKKQ--------AEQLFN---- 694
Cdd:COG4913 512 GRLVYERVRTGLPDPERPRL--DPDSLAG-------KLDFKPHPFR------AWLEAELGRRfdyvcvdsPEELRRhpra 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 695 -----QMYNP----AHNIEDDSRMNPEF----ADRLKQLDKEAsyyrdecGKAQAEVDRLLEILKEVENEKNDKDKKIAE 761
Cdd:COG4913 577 itragQVKGNgtrhEKDDRRRIRSRYVLgfdnRAKLAALEAEL-------AELEEELAEAEERLEALEAELDALQERREA 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 762 LERHMKDQNKKVANLKYNQQLEKkknaqlLEEVRRREDSmvDNSQHLQIEELMNALEKTRQELDATKARLASTQQSLAEK 841
Cdd:COG4913 650 LQRLAEYSWDEIDVASAEREIAE------LEAELERLDA--SSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKE 721
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907100919 842 EAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKDRLVHQL 909
Cdd:COG4913 722 LEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEEL 789
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
432-634 |
4.79e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 60.70 E-value: 4.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 432 MKTKIDQLK---QELSKKESELLALQTKLETLSNQNSDCKQHIEvLKESLTAKEQRAAIL-----QTEVDALRLRLEEKE 503
Cdd:COG4913 223 TFEAADALVehfDDLERAHEALEDAREQIELLEPIRELAERYAA-ARERLAELEYLRAALrlwfaQRRLELLEAELEELR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 504 SFLNKKTKQLQDLTEEKGTLAGEIRDMK-DMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTA 582
Cdd:COG4913 302 AELARLEAELERLEARLDALREELDELEaQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEE 381
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1907100919 583 LATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQA 634
Cdd:COG4913 382 FAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
284-875 |
4.87e-09 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 60.69 E-value: 4.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 284 LEEMELRIETQKQTLNARDESIKKLLEMLQSKGLP----SKSLEDDNERTRRMaeaESQVSHLEVILDQKEKENIHLREE 359
Cdd:PRK01156 164 LERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLEleniKKQIADDEKSHSIT---LKEIERLSIEYNNAMDDYNNLKSA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 360 LHRRSQLQPEPAKtkalqtviemkdtkiasLERNIRDLEDEVQM--LKANGVLNTEDREEEIKQIEVYKSHSKF-----M 432
Cdd:PRK01156 241 LNELSSLEDMKNR-----------------YESEIKTAESDLSMelEKNNYYKELEERHMKIINDPVYKNRNYIndyfkY 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 433 KTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKEsltakeqraailQTEVDALRLRLEEKESFLNKKTKQ 512
Cdd:PRK01156 304 KNDIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSR------------YDDLNNQILELEGYEMDYNSYLKS 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 513 LQDLTEEKGTLAGEIRDMKD----MLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEe 588
Cdd:PRK01156 372 IESLKKKIEEYSKNIERMSAfiseILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLN- 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 589 ALSEKERIIERLKEQRERDDRERLEEiesfrkENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKR----DSKL 664
Cdd:PRK01156 451 GQSVCPVCGTTLGEEKSNHIINHYNE------KKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKsineYNKI 524
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 665 KSLEIAIEQKKEECNKLEAQLKKqAEQLFNQmYNPAHnIEDDSRMNPEFADRLKQ---LDKEASYYRDECGKAQAE--VD 739
Cdd:PRK01156 525 ESARADLEDIKIKINELKDKHDK-YEEIKNR-YKSLK-LEDLDSKRTSWLNALAVislIDIETNRSRSNEIKKQLNdlES 601
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 740 RLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKYNQQLEKKKNAQL------LEEVRRREDSMVD-NSQHLQIEE 812
Cdd:PRK01156 602 RLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIdnykkqIAEIDSIIPDLKEiTSRINDIED 681
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907100919 813 LMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEeilemKQEALLAAISEKD 875
Cdd:PRK01156 682 NLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLE-----SMKKIKKAIGDLK 739
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
224-877 |
6.69e-09 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 60.45 E-value: 6.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 224 TIQALQDELRTQR-DLNHLLQQESGNRGAEHFTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQK-QTLNAR 301
Cdd:TIGR00606 423 LKQEQADEIRDEKkGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLtETLKKE 502
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 302 DESIKKL-LEMLQSKGLPSKSLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELhrrSQLQPEPAKTKALQTVI 380
Cdd:TIGR00606 503 VKSLQNEkADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDEL---TSLLGYFPNKKQLEDWL 579
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 381 EMKDTKIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEVYKSH------SKFMKTKIDQLKQELSKKESELLALQ 454
Cdd:TIGR00606 580 HSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKlfdvcgSQDEESDLERLKEEIEKSSKQRAMLA 659
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 455 TK-------LETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEI 527
Cdd:TIGR00606 660 GAtavysqfITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSII 739
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 528 -RDMKDMLEVKERKINVlQKKIENLQEQLRDKDKQLTNLKDRVKS---LQTDSsntdTALATLEEALSEKERIIERL--- 600
Cdd:TIGR00606 740 dLKEKEIPELRNKLQKV-NRDIQRLKNDIEEQETLLGTIMPEEESakvCLTDV----TIMERFQMELKDVERKIAQQaak 814
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 601 --------------KEQRERDDRER--LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHAS---SLASAGLKRD 661
Cdd:TIGR00606 815 lqgsdldrtvqqvnQEKQEKQHELDtvVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQrrqQFEEQLVELS 894
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 662 SKLKSLEIAIEQKKEECNKLEaQLKKQAEQLFNQMYNPAHniEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRL 741
Cdd:TIGR00606 895 TEVQSLIREIKDAKEQDSPLE-TFLEKDQQEKEELISSKE--TSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDY 971
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 742 LeilKEVENEKNDKDKKIAELERHMKDQNKKVANLKYN------------QQLEKKKNAQLLEEVRRREDSMVDNSQHLQ 809
Cdd:TIGR00606 972 L---KQKETELNTVNAQLEECEKHQEKINEDMRLMRQDidtqkiqerwlqDNLTLRKRENELKEVEEELKQHLKEMGQMQ 1048
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 810 IEELMNALEKTRQELDATKAR--LASTQQSLAEKEAHLANLRIeRRKQLEEILEMKQEALLAAISEKDAN 877
Cdd:TIGR00606 1049 VLQMKQEHQKLEENIDLIKRNhvLALGRQKGYEKEIKHFKKEL-REPQFRDAEEKYREMMIVMRTTELVN 1117
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
413-659 |
9.76e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 58.62 E-value: 9.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 413 EDREEEIKQIevykshskfmKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEV 492
Cdd:COG4942 23 AEAEAELEQL----------QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 493 DALRLRLEEKESFLNKKTKQLQDL-TEEKGTLAGEIRDMKDMLevkeRKINVLQKKIENLQEQLRDKDKQLTNLKDRVKS 571
Cdd:COG4942 93 AELRAELEAQKEELAELLRALYRLgRQPPLALLLSPEDFLDAV----RRLQYLKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 572 LQTDSsntdTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHAS 651
Cdd:COG4942 169 LEAER----AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
....*...
gi 1907100919 652 SLASAGLK 659
Cdd:COG4942 245 AAGFAALK 252
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
487-910 |
2.97e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.15 E-value: 2.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 487 ILQTEVDALRLRLEEKESFLnKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKInvlqKKIENLQEQLRDKDKQLTNLK 566
Cdd:PRK03918 132 IRQGEIDAILESDESREKVV-RQILGLDDYENAYKNLGEVIKEIKRRIERLEKFI----KRTENIEELIKEKEKELEEVL 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 567 DRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQR-------------ERDDRERLEEIESFRKENKDLKEKVNALQ 633
Cdd:PRK03918 207 REINEISSELPELREELEKLEKEVKELEELKEEIEELEkeleslegskrklEEKIRELEERIEELKKEIEELEEKVKELK 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 634 A--ELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKqAEQLFNQMYNPAHNIEDDSRMnp 711
Cdd:PRK03918 287 ElkEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEE-LKKKLKELEKRLEELEERHEL-- 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 712 efADRLKQLDKEASYYRDEcgKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKYNqqLEKKKNAQLL 791
Cdd:PRK03918 364 --YEEAKAKKEELERLKKR--LTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKA--IEELKKAKGK 437
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 792 EEVRRREdsmvdnsqhLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAAI 871
Cdd:PRK03918 438 CPVCGRE---------LTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKEL 508
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 1907100919 872 SEKDANIALLELSASKKK--KTQEEVMALKREKDRLVHQLK 910
Cdd:PRK03918 509 EEKLKKYNLEELEKKAEEyeKLKEKLIKLKGEIKSLKKELE 549
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
148-639 |
4.46e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 57.62 E-value: 4.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 148 LDLQAQLKELQRENDLLRKELDIKDSKLGSSMNSIKtfwspELKKERVLRKEEAARmsvLKEQMR-VSHEENQHLQLTIQ 226
Cdd:COG4913 277 LRAALRLWFAQRRLELLEAELEELRAELARLEAELE-----RLEARLDALREELDE---LEAQIRgNGGDRLEQLEREIE 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 227 ALQDELRTQRdlNHLLQQESGNRGAeHFTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIK 306
Cdd:COG4913 349 RLERELEERE--RRRARLEALLAAL-GLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELE 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 307 KLLEMLQSKGlpsKSLEDDNERTRRMAEAESQVS---------HLEVILDQK------EK-------------------- 351
Cdd:COG4913 426 AEIASLERRK---SNIPARLLALRDALAEALGLDeaelpfvgeLIEVRPEEErwrgaiERvlggfaltllvppehyaaal 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 352 ---ENIHLREELH------RRSQLQPEPAKTKALQTVIEMKDTKI-----ASLER--------NIRDLEDEVQ------M 403
Cdd:COG4913 503 rwvNRLHLRGRLVyervrtGLPDPERPRLDPDSLAGKLDFKPHPFrawleAELGRrfdyvcvdSPEELRRHPRaitragQ 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 404 LKANGVLNTEDREEEIKQIEVYKSHSKfmkTKIDQLKQELSKKESELLALQTKLETLsnqnsdcKQHIEVLKESLTAKEQ 483
Cdd:COG4913 583 VKGNGTRHEKDDRRRIRSRYVLGFDNR---AKLAALEAELAELEEELAEAEERLEAL-------EAELDALQERREALQR 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 484 RAAILQTEVD--ALRLRLEEKEsflnkktKQLQDLTEEKGTLAGeirdMKDMLEVKERKINVLQKKIENLQEQLRDKDKQ 561
Cdd:COG4913 653 LAEYSWDEIDvaSAEREIAELE-------AELERLDASSDDLAA----LEEQLEELEAELEELEEELDELKGEIGRLEKE 721
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907100919 562 LTNLKDRVKSLQTDSSNTDTALATLEEALSEkERIIERLKEQRERDDRERLEEiesfrkENKDLKEKVNALQAELTEK 639
Cdd:COG4913 722 LEQAEEELDELQDRLEAAEDLARLELRALLE-ERFAAALGDAVERELRENLEE------RIDALRARLNRAEEELERA 792
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
433-642 |
5.07e-08 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 56.38 E-value: 5.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 433 KTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQ 512
Cdd:COG3883 22 QKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSGGS 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 513 LQDLT-----EEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQtdssntdTALATLE 587
Cdd:COG3883 102 VSYLDvllgsESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELE-------AAKAELE 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1907100919 588 EALSEKERIIERLKEQRerddRERLEEIESFRKENKDLKEKVNALQAELTEKESS 642
Cdd:COG3883 175 AQQAEQEALLAQLSAEE----AAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAA 225
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
433-838 |
5.12e-08 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 57.06 E-value: 5.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 433 KTKIDQLKQELSKK-----------ESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEE 501
Cdd:pfam05557 8 KARLSQLQNEKKQMelehkrarielEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRLKKKYLEA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 502 KESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDT 581
Cdd:pfam05557 88 LNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQQSSLAE 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 582 A---LATLEEALSEKERIIERLKEQRERDDR--------ERLEEIESFRKENKD----LKEKVNALQAELTEKEssliDL 646
Cdd:pfam05557 168 AeqrIKELEFEIQSQEQDSEIVKNSKSELARipelekelERLREHNKHLNENIEnkllLKEEVEDLKRKLEREE----KY 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 647 KEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAqLKKQAEQLfnQMYNPAHNIEDDSRMNpefadRLKQLDKEASY 726
Cdd:pfam05557 244 REEAATLELEKEKLEQELQSWVKLAQDTGLNLRSPED-LSRRIEQL--QQREIVLKEENSSLTS-----SARQLEKARRE 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 727 YRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELErhmKDQNKKVANLK-YNQQLEKKKNAQLLEEVRRREDSMVDNS 805
Cdd:pfam05557 316 LEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLT---KERDGYRAILEsYDKELTMSNYSPQLLERIEEAEDMTQKM 392
|
410 420 430
....*....|....*....|....*....|...
gi 1907100919 806 QhLQIEELMNALEKTRQELDATKARLASTQQSL 838
Cdd:pfam05557 393 Q-AHNEEMEAQLSVAEEELGGYKQQAQTLEREL 424
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
375-606 |
5.92e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.31 E-value: 5.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 375 ALQTVIEMKDTKIASLERNIRDLEDEVQMLKANgvlnTEDREEEIKQIEvykshskfmkTKIDQLKQELSKKESELLALQ 454
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKE----EKALLKQLAALE----------RRIAALARRIRALEQELAALE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 455 TKLETLSNQNSDCKQHIEVLKESLtAKEQRAAILQTEVDALRLRLEEKESF-LNKKTKQLQDLTEEKGTLAGEIRDMKDM 533
Cdd:COG4942 83 AELAELEKEIAELRAELEAQKEEL-AELLRALYRLGRQPPLALLLSPEDFLdAVRRLQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907100919 534 LEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDR----VKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRER 606
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEALKAErqklLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
538-692 |
7.75e-08 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 54.55 E-value: 7.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 538 ERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQ-------RERDDRE 610
Cdd:COG1579 16 DSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQlgnvrnnKEYEALQ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 611 RleEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASaglKRDSKLKSLEIAIEQKKEECNKLEAQLKKQAE 690
Cdd:COG1579 96 K--EIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEA---ELEEKKAELDEELAELEAELEELEAEREELAA 170
|
..
gi 1907100919 691 QL 692
Cdd:COG1579 171 KI 172
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
145-605 |
1.19e-07 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 55.90 E-value: 1.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 145 STMLDLQAQLKELQRENDLLRKELDIKDSKLGSSMNSIKTFWSPELKKERVLRKEEAARMSVLKEQMRVSHEENQHLQLT 224
Cdd:pfam05557 9 ARLSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRLKKKYLEAL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 225 IQALQDELRTQRDLNHLLQQESGNRGAEHFTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRI---ETQKQTLNAR 301
Cdd:pfam05557 89 NKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRqnlEKQQSSLAEA 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 302 DESIKKLLEMLQSKglpskslEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELHRRSQLQPEPAKTKALQTVIE 381
Cdd:pfam05557 169 EQRIKELEFEIQSQ-------EQDSEIVKNSKSELARIPELEKELERLREHNKHLNENIENKLLLKEEVEDLKRKLEREE 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 382 MKDTKIASLERNIRDLEDEVQM---LKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLE 458
Cdd:pfam05557 242 KYREEAATLELEKEKLEQELQSwvkLAQDTGLNLRSPEDLSRRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQELA 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 459 TLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNkKTKQLQDLTEEKGTLAGEIRDMKDMLEVKE 538
Cdd:pfam05557 322 QYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILESYDKELT-MSNYSPQLLERIEEAEDMTQKMQAHNEEME 400
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907100919 539 RKINVLQKKIENLQEQLRDKDKQLTNLKDrvKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRE 605
Cdd:pfam05557 401 AQLSVAEEELGGYKQQAQTLERELQALRQ--QESLADPSYSKEEVDSLRRKLETLELERQRLREQKN 465
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
565-777 |
1.24e-07 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 55.79 E-value: 1.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 565 LKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQrERDDRERLEE-IESFRKENKDLKEKVNALQAELTEKESSL 643
Cdd:PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKK-NGENIARKQNkYDELVEEAKTIKAEIEELTDELLNLVMDI 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 644 IDLKEHASSLASAGLKRDSKLKSL--EIAIEQKKEECNKLEAQLKKQAE---QLFNQMYNPAHNIED--------DSRMN 710
Cdd:PHA02562 251 EDPSAALNKLNTAAAKIKSKIEQFqkVIKMYEKGGVCPTCTQQISEGPDritKIKDKLKELQHSLEKldtaidelEEIMD 330
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 711 pEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVEN---EKNDKDKKIAELERHMKDQNKKVANLK 777
Cdd:PHA02562 331 -EFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEElqaEFVDNAEELAKLQDELDKIVKTKSELV 399
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
417-628 |
1.25e-07 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 55.79 E-value: 1.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 417 EEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLET----------LSNQNSDCKQHI--EVLKESLTAKEQR 484
Cdd:PHA02562 157 EDLLDISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTynknieeqrkKNGENIARKQNKydELVEEAKTIKAEI 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 485 AAiLQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGE----------------IRDMKDMLEVKERKINVLQKKI 548
Cdd:PHA02562 237 EE-LTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVikmyekggvcptctqqISEGPDRITKIKDKLKELQHSL 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 549 ENL---QEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDrerlEEIESFRKENKDL 625
Cdd:PHA02562 316 EKLdtaIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNA----EELAKLQDELDKI 391
|
...
gi 1907100919 626 KEK 628
Cdd:PHA02562 392 VKT 394
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
432-631 |
1.55e-07 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 53.39 E-value: 1.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 432 MKTKIDQLKqELSKKESELLALQTKLETLsnqnsdcKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLnkktK 511
Cdd:COG1579 2 MPEDLRALL-DLQELDSELDRLEHRLKEL-------PAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEI----E 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 512 QLQDLTEEKGTLAGEIRDMKDMlevkerkiNVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQtdssntdTALATLEEALS 591
Cdd:COG1579 70 EVEARIKKYEEQLGNVRNNKEY--------EALQKEIESLKRRISDLEDEILELMERIEELE-------EELAELEAELA 134
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1907100919 592 EKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNA 631
Cdd:COG1579 135 ELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPP 174
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
510-692 |
1.94e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.38 E-value: 1.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 510 TKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEA 589
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 590 LSE-KERIIERLKEQRERDDRERLEEIES-------------FRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLAS 655
Cdd:COG4942 99 LEAqKEELAELLRALYRLGRQPPLALLLSpedfldavrrlqyLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190
....*....|....*....|....*....|....*..
gi 1907100919 656 AGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKQAEQL 692
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAEL 215
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
273-524 |
2.02e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.38 E-value: 2.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 273 QAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLqskglpsKSLEDD-NERTRRMAEAESQVSHLEVILDQKEK 351
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQL-------AALERRiAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 352 ENIHLREELHRRSQLQpepakTKALQTVIEMKDTKIASLERNIRDLEDEVQMLKANGVLNTEDREeeikQIEVYKSHSKF 431
Cdd:COG4942 91 EIAELRAELEAQKEEL-----AELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARRE----QAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 432 MKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLE--EKESFLNKK 509
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIArlEAEAAAAAE 241
|
250
....*....|....*
gi 1907100919 510 TKQLQDLTEEKGTLA 524
Cdd:COG4942 242 RTPAAGFAALKGKLP 256
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
224-737 |
2.35e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.31 E-value: 2.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 224 TIQALQDELRTQRDLNHLLQQESGNRGAEHFTIELT--EENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKqtlNAR 301
Cdd:COG4913 263 RYAAARERLAELEYLRAALRLWFAQRRLELLEAELEelRAELARLEAELERLEARLDALREELDELEAQIRGNG---GDR 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 302 DESIKKLLEMLQskglpskslEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELHRRsqLQPEPAKTKALQTVIE 381
Cdd:COG4913 340 LEQLEREIERLE---------RELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAAL--LEALEEELEALEEALA 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 382 MKDTKIASLERNIRDLEDEVQMLKANGVlNTEDREEEIKqievykshskfmktkiDQLKQELSKKESEL----------- 450
Cdd:COG4913 409 EAEAALRDLRRELRELEAEIASLERRKS-NIPARLLALR----------------DALAEALGLDEAELpfvgelievrp 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 451 ------LALQTKLETLS-----------------NQNSDcKQHIEVLKESLTAKEQRAAilQTEVDALRLRLEEKES--- 504
Cdd:COG4913 472 eeerwrGAIERVLGGFAltllvppehyaaalrwvNRLHL-RGRLVYERVRTGLPDPERP--RLDPDSLAGKLDFKPHpfr 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 505 -FLNKKTKQLQDL----------TEEKG-TLAGEIRDMKDMLE----VKERKINVL----QKKIENLQEQLRDKDKQLTN 564
Cdd:COG4913 549 aWLEAELGRRFDYvcvdspeelrRHPRAiTRAGQVKGNGTRHEkddrRRIRSRYVLgfdnRAKLAALEAELAELEEELAE 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 565 LKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDD-RERLEEIESFRKENKDLKEKVNALQAELTEKESSL 643
Cdd:COG4913 629 AEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAElEAELERLDASSDDLAALEEQLEELEAELEELEEEL 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 644 IDLKEHASSLasaglkrDSKLKSLEIAIEQKKEECNKLEAQLKKQAEQLFNQMYNPAHNIEDDSRMNPEFADRLKQLDKE 723
Cdd:COG4913 709 DELKGEIGRL-------EKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRAR 781
|
570
....*....|....
gi 1907100919 724 ASYYRDECGKAQAE 737
Cdd:COG4913 782 LNRAEEELERAMRA 795
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
513-658 |
2.41e-07 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 54.86 E-value: 2.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 513 LQDLTEEKgtLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRdkdkqltNLKDRVKSLQTDssntdtaLATLEEALSE 592
Cdd:COG2433 382 LEELIEKE--LPEEEPEAEREKEHEERELTEEEEEIRRLEEQVE-------RLEAEVEELEAE-------LEEKDERIER 445
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907100919 593 KERIIERLKEQRERDDRERlEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGL 658
Cdd:COG2433 446 LERELSEARSEERREIRKD-REISRLDREIERLERELEEERERIEELKRKLERLKELWKLEHSGEL 510
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
151-822 |
5.42e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 53.90 E-value: 5.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 151 QAQLKELQRENDLLRKELDIKDSKLGSSMNSIKTFWSP----ELKKERVLRKEEAARMSVLKEQMRVSHEENQHLQLTIQ 226
Cdd:TIGR00606 425 QEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKElqqlEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVK 504
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 227 ALQDE----LRTQRDLNHLLQQESGNRGAEHFTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKqTLNARD 302
Cdd:TIGR00606 505 SLQNEkadlDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLED-WLHSKS 583
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 303 ESIKKLLEMLQSKGLPSKSLEDDNERTRRMAEA-ESQVSHLEVIL------DQKEKENIHLREELHR-RSQLQPEPAKTK 374
Cdd:TIGR00606 584 KEINQTRDRLAKLNKELASLEQNKNHINNELESkEEQLSSYEDKLfdvcgsQDEESDLERLKEEIEKsSKQRAMLAGATA 663
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 375 ALQTVIEMKDTKIAS----------LERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEvykSHSKFMKTKIDQLKQELS 444
Cdd:TIGR00606 664 VYSQFITQLTDENQSccpvcqrvfqTEAELQEFISDLQSKLRLAPDKLKSTESELKKKE---KRRDEMLGLAPGRQSIID 740
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 445 KKESELLALQTKLETLSNQNSDCKQHI---EVLKESLTAKEQRAAILQTEV---DALRLRLEEKESFLNKKTKQLQ--DL 516
Cdd:TIGR00606 741 LKEKEIPELRNKLQKVNRDIQRLKNDIeeqETLLGTIMPEEESAKVCLTDVtimERFQMELKDVERKIAQQAAKLQgsDL 820
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 517 TEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERI 596
Cdd:TIGR00606 821 DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSL 900
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 597 IERLKEQR----------ERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKrdsklks 666
Cdd:TIGR00606 901 IREIKDAKeqdspletflEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLK------- 973
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 667 leiaieQKKEECNKLEAQLKKQAEQlfnqmynpAHNIEDDSrmnpefadRLKQLDKEASYYRDECGKAQAEVDRLLEILK 746
Cdd:TIGR00606 974 ------QKETELNTVNAQLEECEKH--------QEKINEDM--------RLMRQDIDTQKIQERWLQDNLTLRKRENELK 1031
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907100919 747 EVENEKNDKDKKIAELE-RHMKDQNKKVANlkyNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQIEELMNALEKTRQ 822
Cdd:TIGR00606 1032 EVEEELKQHLKEMGQMQvLQMKQEHQKLEE---NIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYRE 1105
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
368-719 |
6.33e-07 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 53.42 E-value: 6.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 368 PEPAKTKALQTVIEMKDTKIASLerNIRDLEDEVQMLKANGVLntEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKE 447
Cdd:COG5185 198 AEPSGTVNSIKESETGNLGSEST--LLEKAKEIINIEEALKGF--QDPESELEDLAQTSDKLEKLVEQNTDLRLEKLGEN 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 448 SEllalqtKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQT--EVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAG 525
Cdd:COG5185 274 AE------SSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKAteSLEEQLAAAEAEQELEESKRETETGIQNLTAEIEQ 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 526 EIRDMKDMLEV--KERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSN-TDTALATLEEALSEKERIIERLKE 602
Cdd:COG5185 348 GQESLTENLEAikEEIENIVGEVELSKSSEELDSFKDTIESTKESLDEIPQNQRGyAQEILATLEDTLKAADRQIEELQR 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 603 QRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSliDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLE 682
Cdd:COG5185 428 QIEQATSSNEEVSKLLNELISELNKVMREADEESQSRLEE--AYDEINRSVRSKKEDLNEELTQIESRVSTLKATLEKLR 505
|
330 340 350
....*....|....*....|....*....|....*..
gi 1907100919 683 AQLKKQAEQLFNQMYNPAHNIEDDSRMNPEFADRLKQ 719
Cdd:COG5185 506 AKLERQLEGVRSKLDQVAESLKDFMRARGYAHILALE 542
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
716-873 |
6.41e-07 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 51.85 E-value: 6.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 716 RLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVAnlKYNQQLEKKKNAQLLEEVR 795
Cdd:COG1579 18 ELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIK--KYEEQLGNVRNNKEYEALQ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 796 RREDSMVDNSQHL--QIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEmKQEALLAAISE 873
Cdd:COG1579 96 KEIESLKRRISDLedEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA-EREELAAKIPP 174
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
265-557 |
6.47e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 6.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 265 RLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLPSKSLEddnertRRMAEAESQVSHLEV 344
Cdd:TIGR02169 692 SLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE------QEIENVKSELKELEA 765
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 345 ILDQKEKENIHLREELH------RRSQLQPEPAKTKALQTVIEMKDTKIASLERNIRD-------LEDEVQMLKANgVLN 411
Cdd:TIGR02169 766 RIEELEEDLHKLEEALNdlearlSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRltlekeyLEKEIQELQEQ-RID 844
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 412 TEDREEEIKQievykshskfmktKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTE 491
Cdd:TIGR02169 845 LKEQIKSIEK-------------EIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQ 911
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907100919 492 VDALRLRLEEKESflnkktkQLQDLTEEKGTLAGEIRDMKDMLEvKERKINVLQKKIENLQEQLRD 557
Cdd:TIGR02169 912 IEKKRKRLSELKA-------KLEALEEELSEIEDPKGEDEEIPE-EELSLEDVQAELQRVEEEIRA 969
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
538-723 |
6.51e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.77 E-value: 6.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 538 ERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQ---------TDSSNTDTALATLEEALSEKERIIERLKE------ 602
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQerrealqrlAEYSWDEIDVASAEREIAELEAELERLDAssddla 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 603 --QRERDDRErlEEIESFRKENKDLKEKVNALQAELTEKESSLIDLK---EHASSLASAGL---------------KRDS 662
Cdd:COG4913 689 alEEQLEELE--AELEELEEELDELKGEIGRLEKELEQAEEELDELQdrlEAAEDLARLELralleerfaaalgdaVERE 766
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907100919 663 KLKSLEIAIEQKKEECNKLEAQLKKQAEQlFNQMY-NPAHNIEDDSRMNPEFADRLKQLDKE 723
Cdd:COG4913 767 LRENLEERIDALRARLNRAEEELERAMRA-FNREWpAETADLDADLESLPEYLALLDRLEED 827
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
187-865 |
8.38e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 53.43 E-value: 8.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 187 SPELKKERVLRKEEAARMSVLKEQMRVS-HEENQHLQLTIQALQDELRTQRDLNHLLQQESgnrgaehftiELTEENFRR 265
Cdd:TIGR00618 189 KKSLHGKAELLTLRSQLLTLCTPCMPDTyHERKQVLEKELKHLREALQQTQQSHAYLTQKR----------EAQEEQLKK 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 266 LQA--EHDRQAKELFLLRKTLEEMELRIETQKQTLNARDES---------IKKLLEMLQSK-GLPSKSLEDDNERTRRMA 333
Cdd:TIGR00618 259 QQLlkQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIkavtqieqqAQRIHTELQSKmRSRAKLLMKRAAHVKQQS 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 334 EAESQVSHLEVILDQKEKENIHLREELHRRSQLQPEPAKT---KALQTVIEMKDTKIASLERNIRDLEDEVqmlkanGVL 410
Cdd:TIGR00618 339 SIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTqhiHTLQQQKTTLTQKLQSLCKELDILQREQ------ATI 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 411 NTEDREEEIKQIEVYKSHSKF-MKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRaaiLQ 489
Cdd:TIGR00618 413 DTRTSAFRDLQGQLAHAKKQQeLQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETR---KK 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 490 TEVDALRLRLEEKESFLNKKTKQLqdltEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRV 569
Cdd:TIGR00618 490 AVVLARLLELQEEPCPLCGSCIHP----NPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQM 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 570 KSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTE--KESSLIDLK 647
Cdd:TIGR00618 566 QEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLqqCSQELALKL 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 648 EHASSLASAGLKRDSKLKSLEIAiEQKKEECNKLEAQLKKqAEQLFNQMYNPAHNIEDDSRMNPEFADRLKQLDKEASYY 727
Cdd:TIGR00618 646 TALHALQLTLTQERVREHALSIR-VLPKELLASRQLALQK-MQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEI 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 728 RDECGKAQAEVDRLLEILKEVENEKNDKDKKIAElERHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQH 807
Cdd:TIGR00618 724 ENASSSLGSDLAAREDALNQSLKELMHQARTVLK-ARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLK 802
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 1907100919 808 LQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQE 865
Cdd:TIGR00618 803 TLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQ 860
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
346-595 |
9.37e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 9.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 346 LDQKEKENIHLREELHR-RSQLQPEPAKTKALQTVIEMKDTKIASLERNIRDLEDEVQMLkangvlntedrEEEIKQIEv 424
Cdd:COG4942 22 AAEAEAELEQLQQEIAElEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL-----------EAELAELE- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 425 ykshskfmkTKIDQLKQELSKKESELLALQTKLETLSNQNSdckqhIEVL--KESLTAKEQRAAILQTEVDALRLRLEEk 502
Cdd:COG4942 90 ---------KEIAELRAELEAQKEELAELLRALYRLGRQPP-----LALLlsPEDFLDAVRRLQYLKYLAPARREQAEE- 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 503 esfLNKKTKQLQDLTEEkgtLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTA 582
Cdd:COG4942 155 ---LRADLAELAALRAE---LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
250
....*....|...
gi 1907100919 583 LATLEEALSEKER 595
Cdd:COG4942 229 IARLEAEAAAAAE 241
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
385-840 |
1.08e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 52.92 E-value: 1.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 385 TKIASLERNIRDLEDEVQMLKAnGVLNTEDREEEikQIEVYKSHSKFMKTKIDQLKQELSKKESELlalQTKLETLSNQN 464
Cdd:pfam12128 244 TKLQQEFNTLESAELRLSHLHF-GYKSDETLIAS--RQEERQETSAELNQLLRTLDDQWKEKRDEL---NGELSAADAAV 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 465 SDCKQHIEVLKESLTAKEQ----RAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRdmkdmlEVKERK 540
Cdd:pfam12128 318 AKDRSELEALEDQHGAFLDadieTAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIK------EQNNRD 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 541 INVLQKKIENLQEQlrdKDKQLTNLKDRVKSLQtdSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRK 620
Cdd:pfam12128 392 IAGIKDKLAKIREA---RDRQLAVAEDDLQALE--SELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQL 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 621 ENKDlkEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKQAEQLFNQMYNPA 700
Cdd:pfam12128 467 ENFD--ERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHFLRKEA 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 701 HNIEDD------------SRMNPEF-----------------------------------------------ADRLKQLD 721
Cdd:pfam12128 545 PDWEQSigkvispellhrTDLDPEVwdgsvggelnlygvkldlkridvpewaaseeelrerldkaeealqsaREKQAAAE 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 722 KEASYYRDECGKAQAEVDRLLEILKEVE-------NEK-NDKDKKIAELERHMKDQNKKVANLKYNQQLEKKKNAQLLEE 793
Cdd:pfam12128 625 EQLVQANGELEKASREETFARTALKNARldlrrlfDEKqSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEE 704
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 1907100919 794 VRR--REDSMVDNSQHLQIE-ELMNALEKTRQELDATKARLASTQQSLAE 840
Cdd:pfam12128 705 QKEqkREARTEKQAYWQVVEgALDAQLALLKAAIAARRSGAKAELKALET 754
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
162-651 |
1.16e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.46 E-value: 1.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 162 DLLRKELDIKDSKLGSSMNSIKTFWSPELKKERVLRKEEAARmsvlkeqmrvsHEENQHLQLTIQALQDELRTQRDLNHL 241
Cdd:COG4717 45 AMLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEK-----------EEEYAELQEELEELEEELEELEAELEE 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 242 LQQESGN--RGAEHFTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEmlqskGLPS 319
Cdd:COG4717 114 LREELEKleKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLE-----QLSL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 320 KSLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELHRRSQLQPEPAKTKALQT------------VIEMKDTKI 387
Cdd:COG4717 189 ATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEarlllliaaallALLGLGGSL 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 388 ASLERNIRDLEDEVQMLKANGVL----NTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKE----SELLALQTKLET 459
Cdd:COG4717 269 LSLILTIAGVLFLVLGLLALLFLllarEKASLGKEAEELQALPALEELEEEELEELLAALGLPPdlspEELLELLDRIEE 348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 460 LSNQNSDCKQHIEVLKESLTAKEQRAAILQTEV---DALRLRLEEKESFLNKKtKQLQDLTEEKGTLAGEIRDMKDMLEV 536
Cdd:COG4717 349 LQELLREAEELEEELQLEELEQEIAALLAEAGVedeEELRAALEQAEEYQELK-EELEELEEQLEELLGELEELLEALDE 427
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 537 KErkinvLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTAlATLEEALSEKERIIERLKEQRERDDRERL---- 612
Cdd:COG4717 428 EE-----LEEELEELEEELEELEEELEELREELAELEAELEQLEED-GELAELLQELEELKAELRELAEEWAALKLalel 501
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 1907100919 613 --EEIESFRKENKD-LKEKVNALQAELTEKESSLIDLKEHAS 651
Cdd:COG4717 502 leEAREEYREERLPpVLERASEYFSRLTDGRYRLIRIDEDLS 543
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
331-861 |
1.36e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 52.48 E-value: 1.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 331 RMAEAESQVSHLEVILDQKEKENIHLREELHRRSQLQPEPAKTKA-LQTVIEMKDTKIASLERNIRDLEDEVQML---KA 406
Cdd:pfam01576 20 RQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRArLAARKQELEEILHELESRLEEEEERSQQLqneKK 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 407 NGVLNTEDREEEIKQIEVYKSHSKFMKTKIDqlkQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAA 486
Cdd:pfam01576 100 KMQQHIQDLEEQLDEEEAARQKLQLEKVTTE---AKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAK 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 487 ILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDmlevkerKINVLQKKIENLQEQLRDKDKQLTNLK 566
Cdd:pfam01576 177 SLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQE-------QIAELQAQIAELRAQLAKKEEELQAAL 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 567 DRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERL---EEIESFRKENKDLKEKVNALQAELTEKESSL 643
Cdd:pfam01576 250 ARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRdlgEELEALKTELEDTLDTTAAQQELRSKREQEV 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 644 IDLKE--------HASSLASAGLKRDSKLKSLEIAIEQKKEECNKLE----------AQLKKQAEQLFNQMYNPAHNIED 705
Cdd:pfam01576 330 TELKKaleeetrsHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEkakqalesenAELQAELRTLQQAKQDSEHKRKK 409
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 706 DSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKD-----QNKKVANLKYN- 779
Cdd:pfam01576 410 LEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDtqellQEETRQKLNLSt 489
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 780 --QQLEKKKNAqLLEEVRRREDSMVDNSQHLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLE 857
Cdd:pfam01576 490 rlRQLEDERNS-LQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAY 568
|
....
gi 1907100919 858 EILE 861
Cdd:pfam01576 569 DKLE 572
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
715-903 |
1.65e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 51.75 E-value: 1.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 715 DRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLkyNQQLEKKK-------- 786
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEA--EAEIEERReelgerar 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 787 --------------------------NAQLLEEVRRREDSMVDnsqhlQIEELMNALEKTRQELDATKARLASTQQSLAE 840
Cdd:COG3883 94 alyrsggsvsyldvllgsesfsdfldRLSALSKIADADADLLE-----ELKADKAELEAKKAELEAKLAELEALKAELEA 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907100919 841 KEAHLANLRIERRKQLEEiLEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKD 903
Cdd:COG3883 169 AKAELEAQQAEQEALLAQ-LSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
219-926 |
1.73e-06 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 52.39 E-value: 1.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 219 QHLQLTIQALQDELRTQRDLNHLLQQESGNRGAEHFTIELTEENFRRLQAEHDRQAKEL---FLLRKTLE-EMELRIETQ 294
Cdd:COG5022 768 LKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIkreKKLRETEEvEFSLKAEVL 847
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 295 KQTLnARDESIKKLLEMLQSKGLPSKS---LEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELH--RRSQLQPE 369
Cdd:COG5022 848 IQKF-GRSLKAKKRFSLLKKETIYLQSaqrVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSsdLIENLEFK 926
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 370 PAKTKALQTVIEMKDTKIASlERNIRDLEDEVQMLKANGVLN--TEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKE 447
Cdd:COG5022 927 TELIARLKKLLNNIDLEEGP-SIEYVKLPELNKLHEVESKLKetSEEYEDLLKKSTILVREGNKANSELKNFKKELAELS 1005
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 448 SELLALQTK---LETLSNQNSDCKQHIEVLKESLTAKEQraailQTEVDALRLRLEEKESFLNKKTKQLQdlteekgtLA 524
Cdd:COG5022 1006 KQYGALQEStkqLKELPVEVAELQSASKIISSESTELSI-----LKPLQKLKGLLLLENNQLQARYKALK--------LR 1072
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 525 GEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTAlatLEEALSEKERIIERLKEQR 604
Cdd:COG5022 1073 RENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQE---ISKFLSQLVNTLEPVFQKL 1149
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 605 ERDDrERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSlasaglkrdSKLKSLE---IAIEQK-KEECNK 680
Cdd:COG5022 1150 SVLQ-LELDGLFWEANLEALPSPPPFAALSEKRLYQSALYDEKSKLSS---------SEVNDLKnelIALFSKiFSGWPR 1219
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 681 LEAQLKKQAEQLFNQMYNPAHnieddsrmnPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNdkdKKIA 760
Cdd:COG5022 1220 GDKLKKLISEGWVPTEYSTSL---------KGFNNLNKKFDTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLP---ATIN 1287
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 761 ELERHMKDQN-----KKVANLKYNQQLEKKKNAQLLEE-VRRREDSMVDnsqhLQIEELMNA------LEKTRQELDatk 828
Cdd:COG5022 1288 SLLQYINVGLfnalrTKASSLRWKSATEVNYNSEELDDwCREFEISDVD----EELEELIQAvkvlqlLKDDLNKLD--- 1360
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 829 aRLASTQQSLaeKEAHLANLrIERRKQLEEILEMKQEALLAAisEKDANIALLELSASKKKKTQEEVMALKREKDRLVHQ 908
Cdd:COG5022 1361 -ELLDACYSL--NPAEIQNL-KSRYDPADKENNLPKEILKKI--EALLIKQELQLSLEGKDETEVHLSEIFSEEKSLISL 1434
|
730
....*....|....*...
gi 1907100919 909 LKQQVYRSRKHPPCSNIP 926
Cdd:COG5022 1435 DRNSIYKEEVLSSLSALL 1452
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
380-640 |
1.79e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.22 E-value: 1.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 380 IEMKDTKIASLERNIRDLEDEVQMLKANgVLNTEDREEEIKQIEVYKSHSKFMKT---KIDQLKQELSKKE---SELLAL 453
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAE-LDALQERREALQRLAEYSWDEIDVASaerEIAELEAELERLDassDDLAAL 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 454 QTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFlnKKTKQLQDLTEEKGTLAGEiRDMKDM 533
Cdd:COG4913 691 EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDL--ARLELRALLEERFAAALGD-AVEREL 767
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 534 LEVKERKINVLQKKIENLQEQLRDKdkqltnLKDRVKSLQTDSSNTDTALATLEEALSEKERII--------ERLKEQRE 605
Cdd:COG4913 768 RENLEERIDALRARLNRAEEELERA------MRAFNREWPAETADLDADLESLPEYLALLDRLEedglpeyeERFKELLN 841
|
250 260 270
....*....|....*....|....*....|....*.
gi 1907100919 606 RDDRERLEEIES-FRKENKDLKEKVNALQAELTEKE 640
Cdd:COG4913 842 ENSIEFVADLLSkLRRAIREIKERIDPLNDSLKRIP 877
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
149-553 |
2.43e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 2.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 149 DLQAQLKELQRENDLLRKELDIKDSKLGSSMNSIKTFWSPELKKERVLRKEEAARMSvLKEQMRVSHEENQHLQLTIQAL 228
Cdd:TIGR02168 702 ELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE-LEAEIEELEERLEEAEEELAEA 780
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 229 QDELRTqrdlnhlLQQESGNRGAEHFTIeltEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKL 308
Cdd:TIGR02168 781 EAEIEE-------LEAQIEQLKEELKAL---REALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEEL 850
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 309 LEMLQSKglpSKSLEDDNErtrRMAEAESQvshLEVILDQKEKENIHLREELHRRSQLqpepaktkalqtviemkDTKIA 388
Cdd:TIGR02168 851 SEDIESL---AAEIEELEE---LIEELESE---LEALLNERASLEEALALLRSELEEL-----------------SEELR 904
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 389 SLERNIRDLEDEVQMLKangvlntedreEEIKQIEvykshskfmkTKIDQLKQElskkesellaLQTKLETLSNQNSDCK 468
Cdd:TIGR02168 905 ELESKRSELRRELEELR-----------EKLAQLE----------LRLEGLEVR----------IDNLQERLSEEYSLTL 953
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 469 QHIEVLKESLTAKEQRAailQTEVDALRLRL--------------EEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDml 534
Cdd:TIGR02168 954 EEAEALENKIEDDEEEA---RRRLKRLENKIkelgpvnlaaieeyEELKERYDFLTAQKEDLTEAKETLEEAIEEIDR-- 1028
|
410
....*....|....*....
gi 1907100919 535 EVKERKINVLQKKIENLQE 553
Cdd:TIGR02168 1029 EARERFKDTFDQVNENFQR 1047
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
500-893 |
3.05e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 51.26 E-value: 3.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 500 EEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKI----ENLQEQLRDKDKQLTNLKDRVKSLQTD 575
Cdd:pfam05483 229 EEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTklqdENLKELIEKKDHLTKELEDIKMSLQRS 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 576 SSNTDTalatLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLAS 655
Cdd:pfam05483 309 MSTQKA----LEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITM 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 656 AGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKQaEQLFNQMYNPAHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQ 735
Cdd:pfam05483 385 ELQKKSSELEEMTKFKNNKEVELEELKKILAED-EKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIK 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 736 AEVDRLLEILKEVENEKNDKDKKIAELERH---MKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQIEE 812
Cdd:pfam05483 464 TSEEHYLKEVEDLKTELEKEKLKNIELTAHcdkLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKE 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 813 --LMNALEKTRQEL----DATKARLASTqqslaEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALL--ELS 884
Cdd:pfam05483 544 mnLRDELESVREEFiqkgDEVKCKLDKS-----EENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELhqENK 618
|
....*....
gi 1907100919 885 ASKKKKTQE 893
Cdd:pfam05483 619 ALKKKGSAE 627
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
733-865 |
3.69e-06 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 50.93 E-value: 3.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 733 KAQAEVDRLLE--------ILKEVENEKNDKDKKI-AELERHMKDQNKKVanlkynQQLEKKknaqlleeVRRREDsmvd 803
Cdd:PRK12704 35 EAEEEAKRILEeakkeaeaIKKEALLEAKEEIHKLrNEFEKELRERRNEL------QKLEKR--------LLQKEE---- 96
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907100919 804 nsqhlQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQE 865
Cdd:PRK12704 97 -----NLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAE 153
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
413-919 |
4.21e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 50.88 E-value: 4.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 413 EDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEV 492
Cdd:pfam05483 219 EDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKEL 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 493 DALRLRLEEK-------ESFLNKKTKQLQDLTEEKGTLAGEIRDMKdmlEVKERKINVLQKKIENLQEQLRDKDKQLTNL 565
Cdd:pfam05483 299 EDIKMSLQRSmstqkalEEDLQIATKTICQLTEEKEAQMEELNKAK---AAHSFVVTEFEATTCSLEELLRTEQQRLEKN 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 566 KDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRErDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLID 645
Cdd:pfam05483 376 EDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILA-EDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHD 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 646 LKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKQAEQlfnqmynpahniedDSRMNPEFADRLKQLDKEAS 725
Cdd:pfam05483 455 LEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLE--------------NKELTQEASDMTLELKKHQE 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 726 YYRDeCGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANlKYNQQLEKKKNAQLLEEVRRREDSMVDNS 805
Cdd:pfam05483 521 DIIN-CKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLD-KSEENARSIEYEVLKKEKQMKILENKCNN 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 806 QHLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIE---RRKQLEEILEMKQEAL-LAAISEKDaniaLL 881
Cdd:pfam05483 599 LKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELElasAKQKFEEIIDNYQKEIeDKKISEEK----LL 674
|
490 500 510
....*....|....*....|....*....|....*....
gi 1907100919 882 ElSASKKKKTQEEVMALKREKD-RLVHQLKQQVYRSRKH 919
Cdd:pfam05483 675 E-EVEKAKAIADEAVKLQKEIDkRCQHKIAEMVALMEKH 712
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
383-690 |
4.69e-06 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 50.82 E-value: 4.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 383 KDTKIASLERNIRDLEDEVQMLKA--NGVLNT-----EDREEEIKQIEvYKSHSKFMKTKIDQLKQELSKKESELLALQT 455
Cdd:PTZ00108 997 KEYLLGKLERELARLSNKVRFIKHviNGELVItnakkKDLVKELKKLG-YVRFKDIIKKKSEKITAEEEEGAEEDDEADD 1075
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 456 KLETLSNQNSDC-------------KQHIEVLKESLTAKEQRAAILQ---------TEVDALRLRLEEKESFLNKKTKQL 513
Cdd:PTZ00108 1076 EDDEEELGAAVSydyllsmpiwsltKEKVEKLNAELEKKEKELEKLKnttpkdmwlEDLDKFEEALEEQEEVEEKEIAKE 1155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 514 QDLTEEKGTLAGEIRDMKDMLEVKERKIN----------VLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTAL 583
Cdd:PTZ00108 1156 QRLKSKTKGKASKLRKPKLKKKEKKKKKSsadkskkasvVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKP 1235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 584 ATLEEALSEKERIIERLKEQRERDDRERLEEIESFRkenKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSK 663
Cdd:PTZ00108 1236 KKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKP---KNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKK 1312
|
330 340
....*....|....*....|....*...
gi 1907100919 664 -LKSLEIAIEQKKEECNKLEAQLKKQAE 690
Cdd:PTZ00108 1313 rLEGSLAALKKKKKSEKKTARKKKSKTR 1340
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
432-730 |
7.91e-06 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 49.52 E-value: 7.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 432 MKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTK 511
Cdd:COG4372 43 LQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQK 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 512 QLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKD-----RVKSLQTDSSNTDTALATL 586
Cdd:COG4372 123 ERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEaeaeqALDELLKEANRNAEKEEEL 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 587 EEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKS 666
Cdd:COG4372 203 AEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAA 282
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907100919 667 LEIAIEQKKEECNKLEAQLKKQAEQLFNQMYNPAHNIEDDSRMNPEFADRLKQLDKEASYYRDE 730
Cdd:COG4372 283 LELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLL 346
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
548-788 |
9.31e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 49.54 E-value: 9.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 548 IENLQE----QLRDKDKQLTNLKDR-VKSLQTDSSNtdtALATLEEALSEKERIIERLKEQRERDdrerLEEIEsfrken 622
Cdd:PRK05771 22 LEALHElgvvHIEDLKEELSNERLRkLRSLLTKLSE---ALDKLRSYLPKLNPLREEKKKVSVKS----LEELI------ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 623 KDLKEKVNALQAELTEKESSLIDLKEHASSLaSAGLKRDSKLKSLEIAIEQKKEECN------KLEAQLKKQAEQLFNQM 696
Cdd:PRK05771 89 KDVEEELEKIEKEIKELEEEISELENEIKEL-EQEIERLEPWGNFDLDLSLLLGFKYvsvfvgTVPEDKLEELKLESDVE 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 697 YnpAHNIEDDSRMNP-------EFADRLKQLDKEASYYR---DECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERhm 766
Cdd:PRK05771 168 N--VEYISTDKGYVYvvvvvlkELSDEVEEELKKLGFERlelEEEGTPSELIREIKEELEEIEKERESLLEELKELAK-- 243
|
250 260
....*....|....*....|..
gi 1907100919 767 KDQNKKVANLKYNQQLEKKKNA 788
Cdd:PRK05771 244 KYLEELLALYEYLEIELERAEA 265
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
281-616 |
9.53e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 49.68 E-value: 9.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 281 RKTLEEMELRIETQKQTLNARDESIKKLLEMLQS---KGLPSKSLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLR 357
Cdd:PRK03918 400 KEEIEEEISKITARIGELKKEIKELKKAIEELKKakgKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLR 479
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 358 EELHR-RSQLQPEPAKTKALQTVIEMKDTKIASLERNIRDLEDEVQML-KANGVLNT-----EDREEEIKQIEVYKSHSK 430
Cdd:PRK03918 480 KELRElEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYeKLKEKLIKlkgeiKSLKKELEKLEELKKKLA 559
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 431 FMKTKIDQLKQELSKKESELLALQTKL-----ETLSNQNSDCKQHIEVL--KESLTAKEQRAAILQTEVDALRLRLEEKE 503
Cdd:PRK03918 560 ELEKKLDELEEELAELLKELEELGFESveeleERLKELEPFYNEYLELKdaEKELEREEKELKKLEEELDKAFEELAETE 639
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 504 SFLNKKTKQLQDLteEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLqtdsSNTDTAL 583
Cdd:PRK03918 640 KRLEELRKELEEL--EKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEER----EKAKKEL 713
|
330 340 350
....*....|....*....|....*....|...
gi 1907100919 584 ATLEEALSEKERIIERLKEQRERDDRERLEEIE 616
Cdd:PRK03918 714 EKLEKALERVEELREKVKKYKALLKERALSKVG 746
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
317-655 |
1.18e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 49.52 E-value: 1.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 317 LPSKSLEDDNERTRrmaeaeSQVSHLEVILDQKEKENIHLREElHRRSQLQpepaktkaLQTVIEMkdtkIASLERNI-- 394
Cdd:PLN02939 86 LPQKSTSSDDDHNR------ASMQRDEAIAAIDNEQQTNSKDG-EQLSDFQ--------LEDLVGM----IQNAEKNIll 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 395 ------RDLEDEVQMLKANGVLNTE---------DREEEIKQIEVYKSHSKFMKTKIDQLKQELSKK----ESELLALQT 455
Cdd:PLN02939 147 lnqarlQALEDLEKILTEKEALQGKinilemrlsETDARIKLAAQEKIHVEILEEQLEKLRNELLIRgateGLCVHSLSK 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 456 KLETLSNQNSDCKQHIEVLKESLtakeqraaILQTEVDALRLRLEEKESFLNKKTKQLqdltEEKGTLAGEirdmkDMLE 535
Cdd:PLN02939 227 ELDVLKEENMLLKDDIQFLKAEL--------IEVAETEERVFKLEKERSLLDASLREL----ESKFIVAQE-----DVSK 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 536 VKERKINVLQKKIENLQEQLRDKDKQLTN----------LKDRVKSLQTDSSNTDTALATLE--EALSEKeriIERLKEQ 603
Cdd:PLN02939 290 LSPLQYDCWWEKVENLQDLLDRATNQVEKaalvldqnqdLRDKVDKLEASLKEANVSKFSSYkvELLQQK---LKLLEER 366
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 1907100919 604 RERDDRERLEEIESFRKENKDLKEKVNALQAElTEKESslidLKEHASSLAS 655
Cdd:PLN02939 367 LQASDHEIHSYIQLYQESIKEFQDTLSKLKEE-SKKRS----LEHPADDMPS 413
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
261-913 |
1.34e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 49.27 E-value: 1.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 261 ENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKglpSKSLEDDNERTRRMAEAESQVS 340
Cdd:TIGR00606 189 ETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSY---ENELDPLKNRLKEIEHNLSKIM 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 341 HLE---VILDQKEKENIHLREELHRRsQLQPEPAKTKALQTVIEMKDTKIASLERNIRDLEDEVqmlkanGVLNTEDREE 417
Cdd:TIGR00606 266 KLDneiKALKSRKKQMEKDNSELELK-MEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQREL------EKLNKERRLL 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 418 EIKQIEVYKSHSKfMKTKIDQLKQELSKKESELLALQTKLET-----------------------LSNQNSDCKQHIEVL 474
Cdd:TIGR00606 339 NQEKTELLVEQGR-LQLQADRHQEHIRARDSLIQSLATRLELdgfergpfserqiknfhtlvierQEDEAKTAAQLCADL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 475 KESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGeirDMKDMLEVKERkinvLQKKIENLqeQ 554
Cdd:TIGR00606 418 QSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEG---SSDRILELDQE----LRKAEREL--S 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 555 LRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKeQRERDDRERLEEIESFRKENKDLKEKVNALQA 634
Cdd:TIGR00606 489 KAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRT-QMEMLTKDKMDKDEQIRKIKSRHSDELTSLLG 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 635 ELTEK---ESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKQAEQLFNQMYNPAHNIEddsrmnp 711
Cdd:TIGR00606 568 YFPNKkqlEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESD------- 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 712 efADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKYNQQLEKKKNAQLL 791
Cdd:TIGR00606 641 --LERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESEL 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 792 EEVRRREDSMVdnsqhLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLAnlriERRKQLEEILEMKQEALLAAI 871
Cdd:TIGR00606 719 KKKEKRRDEML-----GLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIE----EQETLLGTIMPEEESAKVCLT 789
|
650 660 670 680
....*....|....*....|....*....|....*....|..
gi 1907100919 872 SEKDANIALLELSASKKKKTQEEVMALKREKDRLVHQLKQQV 913
Cdd:TIGR00606 790 DVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEK 831
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
493-759 |
1.37e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 49.52 E-value: 1.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 493 DALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKK----IENLQEQLRDKDKqltnLKDR 568
Cdd:PLN02939 96 DHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQNAEKNILLLNQArlqaLEDLEKILTEKEA----LQGK 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 569 VKSLQTDSSNTDTALAtleeaLSEKERI-IERLKEQRERDDRERL--------------EEIESFRKENKDLKEKVNALQ 633
Cdd:PLN02939 172 INILEMRLSETDARIK-----LAAQEKIhVEILEEQLEKLRNELLirgateglcvhslsKELDVLKEENMLLKDDIQFLK 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 634 AELT------------EKESSLID--LKEHASSLASAglKRD-SKLKSLEI-AIEQKKEECNKLEAQLKKQAEQlfnqmy 697
Cdd:PLN02939 247 AELIevaeteervfklEKERSLLDasLRELESKFIVA--QEDvSKLSPLQYdCWWEKVENLQDLLDRATNQVEK------ 318
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907100919 698 npAHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKaqaeVDRLLEILKEVENEKNDKDKKI 759
Cdd:PLN02939 319 --AALVLDQNQDLRDKVDKLEASLKEANVSKFSSYK----VELLQQKLKLLEERLQASDHEI 374
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
482-695 |
1.98e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 1.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 482 EQRAAILQTEVDALRlRLEEKESFLNKKTKQLQDLTE------EKGTLAGEIRDMKDMLEV--KERKINVLQKKIENLQE 553
Cdd:COG4913 224 FEAADALVEHFDDLE-RAHEALEDAREQIELLEPIRElaeryaAARERLAELEYLRAALRLwfAQRRLELLEAELEELRA 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 554 QLRDkdkqltnlkdrvkslqtdssnTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIEsfrKENKDLKEKVNALQ 633
Cdd:COG4913 303 ELAR---------------------LEAELERLEARLDALREELDELEAQIRGNGGDRLEQLE---REIERLERELEERE 358
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907100919 634 AELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKQAEQLFNQ 695
Cdd:COG4913 359 RRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRE 420
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
338-828 |
2.01e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 48.89 E-value: 2.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 338 QVSHLEVILDQKEKENIHLREELHRRSQLQPEPAKTKALQTVIE-----MKDTKIASLERNIRDLEDEvqmlKANGVLNT 412
Cdd:TIGR01612 407 KLKHLEILYKHQEDILNNFHKTIERLIFEKPDPNNNNIFKDDFDefnkpIPKSKLKALEKRFFEIFEE----EWGSYDIK 482
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 413 EDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLAlQTKLETLSNQNSDCKQHIEV---LKESLT-AKEQRAAIL 488
Cdd:TIGR01612 483 KDIDENSKQDNTVKLILMRMKDFKDIIDFMELYKPDEVPS-KNIIGFDIDQNIKAKLYKEIeagLKESYElAKNWKKLIH 561
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 489 QtevdaLRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDM-LEVKErkinvlqkKIENLQeqlrDKDKQLTNLKD 567
Cdd:TIGR01612 562 E-----IKKELEEENEDSIHLEKEIKDLFDKYLEIDDEIIYINKLkLELKE--------KIKNIS----DKNEYIKKAID 624
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 568 RVKSLQTDSSNTD----TALATLEEALSEKERIIERLKEQRER---DDRERL-EEIESFRKENK----DLKEKVNALQAE 635
Cdd:TIGR01612 625 LKKIIENNNAYIDelakISPYQVPEHLKNKDKIYSTIKSELSKiyeDDIDALyNELSSIVKENAidntEDKAKLDDLKSK 704
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 636 LtEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKQAEQLFNQMYNPAHNIEDDSRMNPEFAD 715
Cdd:TIGR01612 705 I-DKEYDKIQNMETATVELHLSNIENKKNELLDIIVEIKKHIHGEINKDLNKILEDFKNKEKELSNKINDYAKEKDELNK 783
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 716 RLKQLDKEASYYRDECG-------KAQAEVDRLLEILKEVENEKNDKDKKIAELeRHMKDQ--NK--KVANLKYN----- 779
Cdd:TIGR01612 784 YKSKISEIKNHYNDQINidnikdeDAKQNYDKSKEYIKTISIKEDEIFKIINEM-KFMKDDflNKvdKFINFENNckeki 862
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 1907100919 780 -------QQLEKKKNAQLLEEVRRREDSMVDNSQHLqIEELMNALEKTRQELDATK 828
Cdd:TIGR01612 863 dseheqfAELTNKIKAEISDDKLNDYEKKFNDSKSL-INEINKSIEEEYQNINTLK 917
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
285-864 |
2.06e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 48.63 E-value: 2.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 285 EEMELRIETQKQTLnardesiKKLLEMLQSKglpsksLEDDNERTRRMAEAESQVShlEVILDQKEkeniHLREELHRRS 364
Cdd:pfam01576 60 EEMRARLAARKQEL-------EEILHELESR------LEEEEERSQQLQNEKKKMQ--QHIQDLEE----QLDEEEAARQ 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 365 QLQPEP----AKTKALQTVIEMKDTKIASLERNIRDLEDEVQMLKAngvlNTEDREEEIKQIEVYKSHSKFMKTKIDQLK 440
Cdd:pfam01576 121 KLQLEKvtteAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTS----NLAEEEEKAKSLSKLKNKHEAMISDLEERL 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 441 QELSKKESELLALQTKLE----TLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVD---------------------AL 495
Cdd:pfam01576 197 KKEEKGRQELEKAKRKLEgestDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEeetaqknnalkkireleaqisEL 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 496 RLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEV-------KERKINVLQKKIEnlqEQLRDKDKQLTNLKDR 568
Cdd:pfam01576 277 QEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAqqelrskREQEVTELKKALE---EETRSHEAQLQEMRQK 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 569 vkslqtdssnTDTALATLEEALSEKERI---IERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLID 645
Cdd:pfam01576 354 ----------HTQALEELTEQLEQAKRNkanLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSE 423
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 646 LKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEaqlkKQAEQLFNQMYNPAHNIEDDSRMNPEFADRLKQLDKEAS 725
Cdd:pfam01576 424 SERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLS----KDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERN 499
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 726 yyrdecgkaqaevdRLLEILKEVENEKndkdkkiAELERHMKDQNKKVANLKYNQQlEKKKNAQLLEEVRRREDSMVDNS 805
Cdd:pfam01576 500 --------------SLQEQLEEEEEAK-------RNVERQLSTLQAQLSDMKKKLE-EDAGTLEALEEGKKRLQRELEAL 557
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 1907100919 806 QhLQIEELMNALEKtrqeLDATKARLastQQSLAEKEAHLANLRierrkQLEEILEMKQ 864
Cdd:pfam01576 558 T-QQLEEKAAAYDK----LEKTKNRL---QQELDDLLVDLDHQR-----QLVSNLEKKQ 603
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
376-787 |
2.44e-05 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 48.15 E-value: 2.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 376 LQTVIEMKDTkiasLERNIRDLEDEVQML---KANGVLNTEDREEEIKQIEVYKSHSKFMKTK-------IDQLKQELSK 445
Cdd:pfam05622 2 LSEAQEEKDE----LAQRCHELDQQVSLLqeeKNSLQQENKKLQERLDQLESGDDSGTPGGKKylllqkqLEQLQEENFR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 446 KESELLALQTKLETLSNQNSDCKQHIEvlkeSLTAKEQRAAILQTEVDALRL---RLEEKESFLNKKTKQLQDLTEEKGT 522
Cdd:pfam05622 78 LETARDDYRIKCEELEKEVLELQHRNE----ELTSLAEEAQALKDEMDILREssdKVKKLEATVETYKKKLEDLGDLRRQ 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 523 L-AGEIRDMKDM-----LEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLeeaLSEKERI 596
Cdd:pfam05622 154 VkLLEERNAEYMqrtlqLEEELKKANALRGQLETYKRQVQELHGKLSEESKKADKLEFEYKKLEEKLEAL---QKEKERL 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 597 IErlkeqrERDD-RERLEEIESFRKENKDLK----------EKVNALQAEL--TEKESSLIDLK-EHASSLASAGLKRDS 662
Cdd:pfam05622 231 II------ERDTlRETNEELRCAQLQQAELSqadallspssDPGDNLAAEImpAEIREKLIRLQhENKMLRLGQEGSYRE 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 663 KLKSLEIAIEQKKEECNKLEAQLKK----------QAEQLFNQMYNPAHNIEDDSRMNPEFADRLKQLDKeasyyrdecg 732
Cdd:pfam05622 305 RLTELQQLLEDANRRKNELETQNRLanqrilelqqQVEELQKALQEQGSKAEDSSLLKQKLEEHLEKLHE---------- 374
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 1907100919 733 kAQAEVDRLLEILKEVENEKN-DKDKKIAELERHM--KDQNKKVANLKYNQQLEKKKN 787
Cdd:pfam05622 375 -AQSELQKKKEQIEELEPKQDsNLAQKIDELQEALrkKDEDMKAMEERYKKYVEKAKS 431
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
268-684 |
2.60e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.23 E-value: 2.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 268 AEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLPSK------SLEDDNERTRRMAEAESQVSH 341
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQElealeaELAELPERLEELEERLEELRE 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 342 LEVILDQKEKENIHLREELhRRSQLQPEPAKTKALQTVIEmkdtKIASLERNIRDLEDEVQMLKANGvlntEDREEEIKQ 421
Cdd:COG4717 161 LEEELEELEAELAELQEEL-EELLEQLSLATEEELQDLAE----ELEELQQRLAELEEELEEAQEEL----EELEEELEQ 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 422 IEVYKSHSKfMKTKIDQLKQeLSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEE 501
Cdd:COG4717 232 LENELEAAA-LEERLKEARL-LLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQA 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 502 KESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRdkdkQLTNLKDRVKSLQTDSSNTDT 581
Cdd:COG4717 310 LPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQ----LEELEQEIAALLAEAGVEDEE 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 582 ALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKD-LKEKVNALQAELTEKESSLIDLKEHASSLAS--AGL 658
Cdd:COG4717 386 ELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEeLEEELEELEEELEELEEELEELREELAELEAelEQL 465
|
410 420
....*....|....*....|....*.
gi 1907100919 659 KRDSKLKSLEIAIEQKKEECNKLEAQ 684
Cdd:COG4717 466 EEDGELAELLQELEELKAELRELAEE 491
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
420-737 |
3.15e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.20 E-value: 3.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 420 KQIEVYKSHSKFMKTKIDQLKQELSKKESELlALQTKLEtlsnqNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRL 499
Cdd:pfam17380 282 KAVSERQQQEKFEKMEQERLRQEKEEKAREV-ERRRKLE-----EAEKARQAEMDRQAAIYAEQERMAMERERELERIRQ 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 500 EEKEsflnkktKQLQDLTEEKgtLAGEIRDMKDMlevkERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNT 579
Cdd:pfam17380 356 EERK-------RELERIRQEE--IAMEISRMREL----ERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEM 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 580 DTALATLEEALS------------EKERIieRLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLK 647
Cdd:pfam17380 423 EQIRAEQEEARQrevrrleeerarEMERV--RLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKE 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 648 EHASSlaSAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKQAEQLFNQMYNPAHNIEDDSRMNPEFADRLKQLDKEASYY 727
Cdd:pfam17380 501 LEERK--QAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMM 578
|
330
....*....|..
gi 1907100919 728 RD--ECGKAQAE 737
Cdd:pfam17380 579 RQivESEKARAE 590
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
430-633 |
3.50e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.85 E-value: 3.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 430 KFMKTKIDQLKQELSK--KESELLALQTKLETLSNQnsdcKQHIEVLKESLtakEQRAAILQTEVDALRLRLEEKESFLN 507
Cdd:PRK12704 27 KIAEAKIKEAEEEAKRilEEAKKEAEAIKKEALLEA----KEEIHKLRNEF---EKELRERRNELQKLEKRLLQKEENLD 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 508 KKTKQLQDLTEEkgtlageIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLkdrvkslqtdssntdtalaTLE 587
Cdd:PRK12704 100 RKLELLEKREEE-------LEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGL-------------------TAE 153
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1907100919 588 EAlseKERIIERLKEQRERDDRERLEEIESFRKENKDLKEK---VNALQ 633
Cdd:PRK12704 154 EA---KEILLEKVEEEARHEAAVLIKEIEEEAKEEADKKAKeilAQAIQ 199
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
384-558 |
3.89e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.46 E-value: 3.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 384 DTKIASLERNIRDLEDEVQMLKAngvlNTEDREEEIKQIevykshskfmKTKIDQLKQELSKKESELLALQTKLETLSNQ 463
Cdd:COG1579 16 DSELDRLEHRLKELPAELAELED----ELAALEARLEAA----------KTELEDLEKEIKRLELEIEEVEARIKKYEEQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 464 nsdckqhievLKESLTAKEQRAaiLQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINV 543
Cdd:COG1579 82 ----------LGNVRNNKEYEA--LQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE 149
|
170
....*....|....*
gi 1907100919 544 LQKKIENLQEQLRDK 558
Cdd:COG1579 150 ELAELEAELEELEAE 164
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
560-764 |
4.36e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 4.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 560 KQLTNLKDRVKSLQTDSSNTDTALATLEE---ALSEKERIIERLKEQRE---------------RDDRERLE-------- 613
Cdd:COG4913 204 KPIGDLDDFVREYMLEEPDTFEAADALVEhfdDLERAHEALEDAREQIEllepirelaeryaaaRERLAELEylraalrl 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 614 ------------EIESFRKENKDLKEKVNALQAELTEKESSLIDLKEhasSLASAGLKRdskLKSLEIAIEQKKEECNKL 681
Cdd:COG4913 284 wfaqrrlelleaELEELRAELARLEAELERLEARLDALREELDELEA---QIRGNGGDR---LEQLEREIERLERELEER 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 682 EAQLKKQAEQLFNQMYNPAHNIEddsrmnpEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAE 761
Cdd:COG4913 358 ERRRARLEALLAALGLPLPASAE-------EFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIAS 430
|
...
gi 1907100919 762 LER 764
Cdd:COG4913 431 LER 433
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
371-599 |
4.93e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.32 E-value: 4.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 371 AKTKALQTVIEMKDTKIASLERNIRDLEDEVQMLKA-NGVLNTEDREEEIKQievykshskfmktKIDQLKQELSKKESE 449
Cdd:COG3206 168 LRREEARKALEFLEEQLPELRKELEEAEAALEEFRQkNGLVDLSEEAKLLLQ-------------QLSELESQLAEARAE 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 450 LLALQTKLETLSNQNSDCKQHIEVLKES--LTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEkgtLAGEI 527
Cdd:COG3206 235 LAEAEARLAALRAQLGSGPDALPELLQSpvIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQ---LQQEA 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 528 RDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNT----DTALATLEEALSEKE------RII 597
Cdd:COG3206 312 QRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVArelyESLLQRLEEARLAEAltvgnvRVI 391
|
..
gi 1907100919 598 ER 599
Cdd:COG3206 392 DP 393
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
614-843 |
7.38e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.36 E-value: 7.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 614 EIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKQAEQLF 693
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 694 NQMYNP--------AHNIEDdsrmnpeFADRLKQLDKEASYYRDecgkaqaevdrlleILKEVENEKNDKDKKIAELERH 765
Cdd:COG3883 97 RSGGSVsyldvllgSESFSD-------FLDRLSALSKIADADAD--------------LLEELKADKAELEAKKAELEAK 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 766 MKDQNKKVANLKYNQ-QLEKKKNAQ--LLEEVRRREDSMVDNSQHLQIEELMNALEKTRQELDATKARLASTQQSLAEKE 842
Cdd:COG3883 156 LAELEALKAELEAAKaELEAQQAEQeaLLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAA 235
|
.
gi 1907100919 843 A 843
Cdd:COG3883 236 A 236
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
439-573 |
8.22e-05 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 46.11 E-value: 8.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 439 LKQELSKKESELLALQTKLETLSNQnsdckqhievlkesLTAKEQRAAILQTEVDALRLRLEEKES-------FLNKKTK 511
Cdd:PRK09039 44 LSREISGKDSALDRLNSQIAELADL--------------LSLERQGNQDLQDSVANLRASLSAAEAersrlqaLLAELAG 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 512 QLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQL------------RDKDKQL----------TNLKDRV 569
Cdd:PRK09039 110 AGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLaaleaaldasekRDRESQAkiadlgrrlnVALAQRV 189
|
....
gi 1907100919 570 KSLQ 573
Cdd:PRK09039 190 QELN 193
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
468-692 |
1.26e-04 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 45.84 E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 468 KQHIEVLKESLTAKEQRAAILQ---TEVDALRLRLEEKESfLNKKTKQLQDLTEekgtLAGEIRDMKDMLEVKERKINVL 544
Cdd:COG0497 171 KKELEELRADEAERARELDLLRfqlEELEAAALQPGEEEE-LEEERRRLSNAEK----LREALQEALEALSGGEGGALDL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 545 QKKIENLQEQLRDKDKQLTNLKDRVKSlqtdssntdtALATLEEALSEKERIIERLkeqreRDDRERLEEIESFRKENKD 624
Cdd:COG0497 246 LGQALRALERLAEYDPSLAELAERLES----------ALIELEEAASELRRYLDSL-----EFDPERLEEVEERLALLRR 310
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907100919 625 LKEKvnaLQAELTEkessLIDLKEHASslasaglKRDSKLKSLEIAIEQKKEECNKLEAQLKKQAEQL 692
Cdd:COG0497 311 LARK---YGVTVEE----LLAYAEELR-------AELAELENSDERLEELEAELAEAEAELLEAAEKL 364
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
474-696 |
1.28e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.16 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 474 LKESLTAKEQRAAILQTEVDALRLRLEEKEsflnkktKQLQDLTEEKGTLAGEirdmkdmlevkeRKINVLQKKIENLQE 553
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAE-------AALEEFRQKNGLVDLS------------EEAKLLLQQLSELES 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 554 QLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEAlsekeRIIERLKEQRERDDRERLEEIESFRKEN---KDLKEKVN 630
Cdd:COG3206 227 QLAEARAELAEAEARLAALRAQLGSGPDALPELLQS-----PVIQQLRAQLAELEAELAELSARYTPNHpdvIALRAQIA 301
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907100919 631 ALQAEL-TEKESSLIDLKEHASSLASaglkRDSKLKSLEIAIEQKKEECNKLEAQLK------KQAEQLFNQM 696
Cdd:COG3206 302 ALRAQLqQEAQRILASLEAELEALQA----REASLQAQLAQLEARLAELPELEAELRrlerevEVARELYESL 370
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
344-626 |
1.67e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 45.69 E-value: 1.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 344 VILDQKEKENIhlrEELHRRSQLQPEPAKTkalqtviEMKDTKIASLERNIRDLEDEVQMLKAngVLNTEDREEEIKQIE 423
Cdd:PRK05771 12 VTLKSYKDEVL---EALHELGVVHIEDLKE-------ELSNERLRKLRSLLTKLSEALDKLRS--YLPKLNPLREEKKKV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 424 VYKSHSKFmktkIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLkESLTAkeqraaiLQTEVDALRlRLEEKE 503
Cdd:PRK05771 80 SVKSLEEL----IKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERL-EPWGN-------FDLDLSLLL-GFKYVS 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 504 SFLNKKTKQLQDLTEEKGTLAGEIrdmkdmlEVKERK------INVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQtdss 577
Cdd:PRK05771 147 VFVGTVPEDKLEELKLESDVENVE-------YISTDKgyvyvvVVVLKELSDEVEEELKKLGFERLELEEEGTPSE---- 215
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1907100919 578 ntdtALATLEEALSEKERIIERLKeqrerddrerlEEIESFRKENKDLK 626
Cdd:PRK05771 216 ----LIREIKEELEEIEKERESLL-----------EELKELAKKYLEEL 249
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
384-632 |
1.95e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 45.66 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 384 DTKIASLERNIRDLEDEVQMLKangvlNTEDREEEiKQIEVYKSHSKFMKTKIDQLKqELSKKESELLALQTKLETLSNQ 463
Cdd:PRK01156 482 EEKIREIEIEVKDIDEKIVDLK-----KRKEYLES-EEINKSINEYNKIESARADLE-DIKIKINELKDKHDKYEEIKNR 554
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 464 NSDCkqHIEVLK----ESLTAKEQRAAIlqtEVDALRLRLEEKesflnkkTKQLQDLTEEKGTLAGEIRDMK-------- 531
Cdd:PRK01156 555 YKSL--KLEDLDskrtSWLNALAVISLI---DIETNRSRSNEI-------KKQLNDLESRLQEIEIGFPDDKsyidksir 622
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 532 -------------DMLEVKERKINVLQKKIENLQEQLRDKD---KQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKER 595
Cdd:PRK01156 623 eieneannlnnkyNEIQENKILIEKLRGKIDNYKKQIAEIDsiiPDLKEITSRINDIEDNLKKSRKALDDAKANRARLES 702
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1907100919 596 IIERLK------EQRERDDRERLEEIESFRKENKDLKEKVNAL 632
Cdd:PRK01156 703 TIEILRtrinelSDRINDINETLESMKKIKKAIGDLKRLREAF 745
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
465-695 |
2.37e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 45.29 E-value: 2.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 465 SDCKQHIEVLKESLTAKEQRAAILQTevdalrlrLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMlevkerkinvl 544
Cdd:PRK11281 39 ADVQAQLDALNKQKLLEAEDKLVQQD--------LEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQA----------- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 545 QKKIENLQEQLRDKDKQlTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRE------RLEEIESF 618
Cdd:PRK11281 100 QAELEALKDDNDEETRE-TLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAAlyansqRLQQIRNL 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 619 RKENKDLKEKVNALQAELTEKESSLIDLK--------EHASSLASAG-LKRDskLKSLEIAIEQK-----KEECN-KLEA 683
Cdd:PRK11281 179 LKGGKVGGKALRPSQRVLLQAEQALLNAQndlqrkslEGNTQLQDLLqKQRD--YLTARIQRLEHqlqllQEAINsKRLT 256
|
250
....*....|..
gi 1907100919 684 QLKKQAEQLFNQ 695
Cdd:PRK11281 257 LSEKTVQEAQSQ 268
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
256-403 |
2.58e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.77 E-value: 2.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 256 IELTEENFRrLQAEHDRQAKELfllRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKglpsksleddnertrrmaea 335
Cdd:PRK12704 60 LEAKEEIHK-LRNEFEKELRER---RNELQKLEKRLLQKEENLDRKLELLEKREEELEKK-------------------- 115
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907100919 336 ESQVSHLEVILDQKEKE--NIH--LREELHRRSQLQPEPAKTKALQTVIEMKDTKIASLernIRDLEDEVQM 403
Cdd:PRK12704 116 EKELEQKQQELEKKEEEleELIeeQLQELERISGLTAEEAKEILLEKVEEEARHEAAVL---IKEIEEEAKE 184
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
331-578 |
2.63e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.01 E-value: 2.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 331 RMAEAESQVSHLEVILDQKEkENIHLREELHRRSQlqpepAKTKALQTVIEMKDTKIASLERNIRDLEDEVQMLKANGVL 410
Cdd:PHA02562 175 KIRELNQQIQTLDMKIDHIQ-QQIKTYNKNIEEQR-----KKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVM 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 411 NTEDREEEIKQIEVYKSHskfMKTKIDQLKQELskkesellalqtKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQT 490
Cdd:PHA02562 249 DIEDPSAALNKLNTAAAK---IKSKIEQFQKVI------------KMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQH 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 491 EVDALRLRLEEkesfLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVK 570
Cdd:PHA02562 314 SLEKLDTAIDE----LEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELD 389
|
....*...
gi 1907100919 571 SLQTDSSN 578
Cdd:PHA02562 390 KIVKTKSE 397
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
390-619 |
2.96e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 44.50 E-value: 2.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 390 LERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQ 469
Cdd:pfam07888 36 LEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSE 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 470 HIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIE 549
Cdd:pfam07888 116 EKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQ 195
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907100919 550 NLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERL--KEQRERDDRERLEEIESFR 619
Cdd:pfam07888 196 ELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLnaSERKVEGLGEELSSMAAQR 267
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
496-859 |
3.13e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 44.56 E-value: 3.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 496 RLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQtD 575
Cdd:COG5185 162 KDIFGKLTQELNQNLKKLEIFGLTLGLLKGISELKKAEPSGTVNSIKESETGNLGSESTLLEKAKEIINIEEALKGFQ-D 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 576 SSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLAS 655
Cdd:COG5185 241 PESELEDLAQTSDKLEKLVEQNTDLRLEKLGENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKATESLEEQLAA 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 656 AGLK---------RDSKLKSLEIAIEQKKEECNKLEAQLKKQAEQLFNQmynpaHNIEDDSRMNPEFADRLKQLDKEAsy 726
Cdd:COG5185 321 AEAEqeleeskreTETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGE-----VELSKSSEELDSFKDTIESTKESL-- 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 727 yrDECGKAQAEVDRllEILKEVENEKNDKDKKIAELERHMKDQNKKVanlkynqQLEKKKNAQLLEEVRRREDSMVDNSQ 806
Cdd:COG5185 394 --DEIPQNQRGYAQ--EILATLEDTLKAADRQIEELQRQIEQATSSN-------EEVSKLLNELISELNKVMREADEESQ 462
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1907100919 807 HLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEI 859
Cdd:COG5185 463 SRLEEAYDEINRSVRSKKEDLNEELTQIESRVSTLKATLEKLRAKLERQLEGV 515
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
432-597 |
3.19e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 44.69 E-value: 3.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 432 MKTKIDQLKQELSKKESELLALQTKLETLSnqnsdckqhievlKESLTAKEQRAAILQTEVDALRLRLEEKEsflnkktk 511
Cdd:COG0542 402 VRMEIDSKPEELDELERRLEQLEIEKEALK-------------KEQDEASFERLAELRDELAELEEELEALK-------- 460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 512 qlQDLTEEKgTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDR--------------VKSLQTDSS 577
Cdd:COG0542 461 --ARWEAEK-ELIEEIQELKEELEQRYGKIPELEKELAELEEELAELAPLLREEVTEediaevvsrwtgipVGKLLEGER 537
|
170 180
....*....|....*....|
gi 1907100919 578 NTdtaLATLEEALseKERII 597
Cdd:COG0542 538 EK---LLNLEEEL--HERVI 552
|
|
| ClyA_Cry6Aa-like |
cd22656 |
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes ... |
416-592 |
3.27e-04 |
|
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes pesticidal Cry6Aa toxin from Bacillus thuringiensis, one of the many parasporal crystal (Cry) toxins produced during the sporulation phase of growth. Many of these proteins are toxic to numerous insect species and have been effectively used as proteinaceous insecticides to directly kill insect pests; some have been used to control insect growth on transgenic agricultural plants. Cry6Aa exists as a protoxin, which is activated by cleavage using trypsin. Structure studies for Cry6Aa support a mechanism of action by pore formation, similar to cytolysin A (ClyA)-type alpha pore-forming toxins (alpha-PFTs) such as HblB, and bioassay and mutation studies show that Cry6Aa is an active pore-forming toxin. Cry6Aa shows atypical features compared to other members of alpha-PFTs, including internal repeat sequences and small loop regions within major alpha helices.
Pssm-ID: 439154 [Multi-domain] Cd Length: 309 Bit Score: 43.90 E-value: 3.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 416 EEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSD--CKQHIEVLKESLtaKEQRAAILQtevd 493
Cdd:cd22656 124 DDLLKEAKKYQDKAAKVVDKLTDFENQTEKDQTALETLEKALKDLLTDEGGaiARKEIKDLQKEL--EKLNEEYAA---- 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 494 ALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKkienLQEQLRDKDKQLTNLKDRVKSLQ 573
Cdd:cd22656 198 KLKAKIDELKALIADDEAKLAAALRLIADLTAADTDLDNLLALIGPAIPALEK----LQGAWQAIATDLDSLKDLLEDDI 273
|
170
....*....|....*....
gi 1907100919 574 TDSSNTDTALATLEEALSE 592
Cdd:cd22656 274 SKIPAAILAKLELEKAIEK 292
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
149-383 |
3.42e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 3.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 149 DLQAQLKELQRENDLLRKELDIKDSKLGSSMNSIKTFWSPELKKERVLRKEEaARMSVLKEQMRVSHEENQHLQLTIQAL 228
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALE-QELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 229 QDELRTQ----------RDLNHLLQQESGNRGAEHFTIelteenFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTL 298
Cdd:COG4942 103 KEELAELlralyrlgrqPPLALLLSPEDFLDAVRRLQY------LKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 299 NARDESIKKLLEMLQSkglpsksleDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELHRRSQLQPEPAKTKALQT 378
Cdd:COG4942 177 EALLAELEEERAALEA---------LKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
....*
gi 1907100919 379 VIEMK 383
Cdd:COG4942 248 FAALK 252
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
244-621 |
3.92e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.58 E-value: 3.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 244 QESGNRGAEHFTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNardesIKKLLEMLQSKGLPSKSLE 323
Cdd:pfam02463 644 KESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQL-----EIKKKEQREKEELKKLKLE 718
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 324 DDNERTRRMAEAESQVSHLEVILDQKEKENIHLREEL-HRRSQLQPEPAKTKALQTVIEMKDTKIASLERNIRDLEDEVQ 402
Cdd:pfam02463 719 AEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSrLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKA 798
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 403 MLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKE 482
Cdd:pfam02463 799 QEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEE 878
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 483 QRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQL 562
Cdd:pfam02463 879 LEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEE 958
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907100919 563 TNLKDRVKSLQTDSSNTD----TALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKE 621
Cdd:pfam02463 959 EERNKRLLLAKEELGKVNlmaiEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKE 1021
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
437-697 |
3.98e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 44.12 E-value: 3.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 437 DQLKQELSKKESELLALQTKLETL----SNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQ 512
Cdd:COG4372 2 DRLGEKVGKARLSLFGLRPKTGILiaalSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 513 LQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSE 592
Cdd:COG4372 82 LEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLES 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 593 KERIIERLKEQRERDDRERL-EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAI 671
Cdd:COG4372 162 LQEELAALEQELQALSEAEAeQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDA 241
|
250 260
....*....|....*....|....*.
gi 1907100919 672 EQKKEECNKLEAQLKKQAEQLFNQMY 697
Cdd:COG4372 242 LELEEDKEELLEEVILKEIEELELAI 267
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
264-917 |
4.13e-04 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 44.36 E-value: 4.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 264 RRLQaEHDRQAKELFLLRKTLEEMELRIETQKQTLNArdesikklLEMLQSKGlpsksleddnertrrMAEAESQVSHL- 342
Cdd:pfam07111 70 RQLQ-ELRRLEEEVRLLRETSLQQKMRLEAQAMELDA--------LAVAEKAG---------------QAEAEGLRAALa 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 343 --EVILDQKEKENIHLREELHRRSQLQPEpAKTKALQTVIEMKDTKIASLERNIRDLEDEvqmlkangvlntedREEEIK 420
Cdd:pfam07111 126 gaEMVRKNLEEGSQRELEEIQRLHQEQLS-SLTQAHEEALSSLTSKAEGLEKSLNSLETK--------------RAGEAK 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 421 QIEVYKSHSkfmktkiDQLKQELSKKESELLALQTKLETLSN----------QNSDCKQHIEVLKESLTAKEQRAAILQT 490
Cdd:pfam07111 191 QLAEAQKEA-------ELLRKQLSKTQEELEAQVTLVESLRKyvgeqvppevHSQTWELERQELLDTMQHLQEDRADLQA 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 491 EVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEI-RDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQltnLKDRV 569
Cdd:pfam07111 264 TVELLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEFpKKCRSLLNRWREKVFALMVQLKAQDLEHRDSVKQ---LRGQV 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 570 KSLQTDSSNTDTALATLEEALSEK--ERIIERLKEQRERDDRERLEEIESFRKENKD-----LKEKVNALQAELTEKESS 642
Cdd:pfam07111 341 AELQEQVTSQSQEQAILQRALQDKaaEVEVERMSAKGLQMELSRAQEARRRQQQQTAsaeeqLKFVVNAMSSTQIWLETT 420
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 643 LIDLKEHASSLASAG----------------LKRDSKLKSLEIAIEQKKEECNKLEAQLKKQAEQLFnqmynpahniEDD 706
Cdd:pfam07111 421 MTRVEQAVARIPSLSnrlsyavrkvhtikglMARKVALAQLRQESCPPPPPAPPVDADLSLELEQLR----------EER 490
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 707 SRMNPEFADRLKQLDKEASYYRDEcgkAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKkvanlkyNQQLEKKK 786
Cdd:pfam07111 491 NRLDAELQLSAHLIQQEVGRAREQ---GEAERQQLSEVAQQLEQELQRAQESLASVGQQLEVARQ-------GQQESTEE 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 787 NAQLLEEVRRREDSMvdnSQHLQiEELMNALEKTRQELDATKARLASTqqslaekeahlanlrieRRKQLEEILEMKQEA 866
Cdd:pfam07111 561 AASLRQELTQQQEIY---GQALQ-EKVAEVETRLREQLSDTKRRLNEA-----------------RREQAKAVVSLRQIQ 619
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 1907100919 867 LLAAiSEKDANIALLELSASKKK----KTQEEVMALKREKDRLVHQLKQQVYRSR 917
Cdd:pfam07111 620 HRAT-QEKERNQELRRLQDEARKeegqRLARRVQELERDKNLMLATLQQEGLLSR 673
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
733-917 |
4.49e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.28 E-value: 4.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 733 KAQAEVDRLLEILKEVENEKN------DKDKKIAELERHMKDQNKKVANLKYNQQLEKKKNAQL-LEEVRRREDSMVDNS 805
Cdd:TIGR02168 183 RTRENLDRLEDILNELERQLKslerqaEKAERYKELKAELRELELALLVLRLEELREELEELQEeLKEAEEELEELTAEL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 806 Q--HLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRiERRKQLEEILEMKQEALLAAISEKDANIALLEL 883
Cdd:TIGR02168 263 QelEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILR-ERLANLERQLEELEAQLEELESKLDELAEELAE 341
|
170 180 190
....*....|....*....|....*....|....
gi 1907100919 884 SASKKKKTQEEVMALKREKDRLVHQLKQQVYRSR 917
Cdd:TIGR02168 342 LEEKLEELKEELESLEAELEELEAELEELESRLE 375
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
340-900 |
5.57e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 44.27 E-value: 5.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 340 SHLEVILDQKEKENIHLREELHR-RSQLQPEPAKTKALQTviEMKDTKIASLERNIRDLEDEVQMLKANgvLNTEDREEE 418
Cdd:TIGR01612 678 NELSSIVKENAIDNTEDKAKLDDlKSKIDKEYDKIQNMET--ATVELHLSNIENKKNELLDIIVEIKKH--IHGEINKDL 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 419 IKQIEVYKSHSKFMKTKIDqlkqELSKKESELLALQTKLETLSNQNSDckqhievlkesltakeqraailQTEVDalRLR 498
Cdd:TIGR01612 754 NKILEDFKNKEKELSNKIN----DYAKEKDELNKYKSKISEIKNHYND----------------------QINID--NIK 805
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 499 LEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDS-- 576
Cdd:TIGR01612 806 DEDAKQNYDKSKEYIKTISIKEDEIFKIINEMKFMKDDFLNKVDKFINFENNCKEKIDSEHEQFAELTNKIKAEISDDkl 885
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 577 -------SNTDTALATLEEALSEKERIIERLKEQRE--RDDRERLEEIESFRKENKDLKEKVNalQAELTEKESSLID-- 645
Cdd:TIGR01612 886 ndyekkfNDSKSLINEINKSIEEEYQNINTLKKVDEyiKICENTKESIEKFHNKQNILKEILN--KNIDTIKESNLIEks 963
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 646 -LKEHASSLASAGLKRDSKLKSLEIA-IEQKKEEC----NKLEAQLKKQAEQLFNQMYNPAHNIEDDSRMNPEFADRLK- 718
Cdd:TIGR01612 964 yKDKFDNTLIDKINELDKAFKDASLNdYEAKNNELikyfNDLKANLGKNKENMLYHQFDEKEKATNDIEQKIEDANKNIp 1043
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 719 --QLDKEASYYR--DECGKAQAEVDRLL--EILKEVENEKNDKDKKIAELERHMKDQNKKVANLKYNQQLEK-------- 784
Cdd:TIGR01612 1044 niEIAIHTSIYNiiDEIEKEIGKNIELLnkEILEEAEINITNFNEIKEKLKHYNFDDFGKEENIKYADEINKikddiknl 1123
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 785 ----KKNAQLLEEVRRREDSMVDNSQhLQIEELMNALEKTRQELDATKarLASTQQSLAEKEAHLANLRIERRKQLEEIL 860
Cdd:TIGR01612 1124 dqkiDHHIKALEEIKKKSENYIDEIK-AQINDLEDVADKAISNDDPEE--IEKKIENIVTKIDKKKNIYDEIKKLLNEIA 1200
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 1907100919 861 EM-KQEALLAAISE------KDANIALLELSASKKKKTQEEVMALKR 900
Cdd:TIGR01612 1201 EIeKDKTSLEEVKGinlsygKNLGKLFLEKIDEEKKKSEHMIKAMEA 1247
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
149-614 |
6.79e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.77 E-value: 6.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 149 DLQAQLKELQRENDLLRKELDIKDSKLGSSMNSIKTFWSPELKKERVLRKEEAARMSVLKEQMRVSHEENQHLQLTIQAL 228
Cdd:COG1196 348 EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 229 QDELRTQRDLNHLLQQESGNRGAEHFTIELTEENFRRLQA---EHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESI 305
Cdd:COG1196 428 EALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAElleEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFL 507
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 306 KKLLEMLQSKGLPSKSLEDDNERTRRMAEAESQVSHLEVILDQKEKENI--------HLREELHRRSQLQP-------EP 370
Cdd:COG1196 508 EGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDevaaaaieYLKAAKAGRATFLPldkirarAA 587
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 371 AKTKALQTVIEMKDTKIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQI----EVYKSHSKFMKTKIDQLKQELSKK 446
Cdd:COG1196 588 LAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAvtlaGRLREVTLEGEGGSAGGSLTGGSR 667
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 447 ESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGE 526
Cdd:COG1196 668 RELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEEL 747
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 527 IRDMKDMLEVKERKINVLQKKIENLQEQLRDK-------DKQLTNLKDRVKSLQTDssntdtaLATLEEALSEKERIIER 599
Cdd:COG1196 748 LEEEALEELPEPPDLEELERELERLEREIEALgpvnllaIEEYEELEERYDFLSEQ-------REDLEEARETLEEAIEE 820
|
490
....*....|....*
gi 1907100919 600 LKEQRerddRERLEE 614
Cdd:COG1196 821 IDRET----RERFLE 831
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
230-566 |
6.80e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 6.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 230 DELRTQRDLnhlLQQESGNRGAEHFTIELTEENFRRLQAEHDRQA------KELFLLRKTLEEME---LRIETQKQTLNA 300
Cdd:PRK04863 789 EQLRAEREE---LAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAfeadpeAELRQLNRRRVELEralADHESQEQQQRS 865
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 301 RDESIKKLLEMLQsKGLPSKSLEDDNERTRRMAEAESQVSHLEV----------ILDQKEKENIHLREELHRRSQLQPEP 370
Cdd:PRK04863 866 QLEQAKEGLSALN-RLLPRLNLLADETLADRVEEIREQLDEAEEakrfvqqhgnALAQLEPIVSVLQSDPEQFEQLKQDY 944
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 371 AKTKALQTVIEMKDTKIASLERNIRDL--EDEVQMLKANGVLNtedreeeikqievykshskfmktkiDQLKQELSKKES 448
Cdd:PRK04863 945 QQAQQTQRDAKQQAFALTEVVQRRAHFsyEDAAEMLAKNSDLN-------------------------EKLRQRLEQAEQ 999
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 449 ELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESflnkktKQLQDLTEEKGTLAGEIR 528
Cdd:PRK04863 1000 ERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAE------ERARARRDELHARLSANR 1073
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1907100919 529 DMKDMLEVK----ERKINVLQKKIENLQEQLRDKDKQLTNLK 566
Cdd:PRK04863 1074 SRRNQLEKQltfcEAEMDNLTKKLRKLERDYHEMREQVVNAK 1115
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
144-919 |
7.37e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.63 E-value: 7.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 144 DSTMLDLQAQLKELQRENDLLRKELDIKDSKLGSSMNSIK---TFWSPELKKERVLR-----------KEEAARMSVLKe 209
Cdd:pfam01576 214 EGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEeetAQKNNALKKIRELEaqiselqedleSERAARNKAEK- 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 210 QMRVSHEENQHLQ------LTIQALQDELRTQRDLNHLLQQESGNRGAEHFTIELTEenfrrLQAEHDRQAKELFLLRKT 283
Cdd:pfam01576 293 QRRDLGEELEALKteledtLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQE-----MRQKHTQALEELTEQLEQ 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 284 LEEMELRIETQKQTLNARDESIKKLLEMLQSKglpskslEDDNERTRRmaEAESQVSHLEVILDQKEKENIHLREELHRr 363
Cdd:pfam01576 368 AKRNKANLEKAKQALESENAELQAELRTLQQA-------KQDSEHKRK--KLEGQLQELQARLSESERQRAELAEKLSK- 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 364 sqLQPEpakTKALQTVIEMKDTKIASLERNIRDLEDEVQMLKangvlntEDREEEIKQIEVYKSHSKFMKTKIDQLKQEL 443
Cdd:pfam01576 438 --LQSE---LESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQ-------ELLQEETRQKLNLSTRLRQLEDERNSLQEQL 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 444 SKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKE-------------------- 503
Cdd:pfam01576 506 EEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAaaydklektknrlqqelddl 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 504 -----------SFLNKKTKQL-QDLTEEKG------------------------TLAGEIRDMKDMLEVKERKINVLQKK 547
Cdd:pfam01576 586 lvdldhqrqlvSNLEKKQKKFdQMLAEEKAisaryaeerdraeaeareketralSLARALEEALEAKEELERTNKQLRAE 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 548 IENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERL-------KEQRERDDRERLEEIEsfrk 620
Cdd:pfam01576 666 MEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLevnmqalKAQFERDLQARDEQGE---- 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 621 enkdlkEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIeqkkEECNKLEAQLKKQAEQLFNQMYNPA 700
Cdd:pfam01576 742 ------EKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQI----DAANKGREEAVKQLKKLQAQMKDLQ 811
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 701 HNIEDDSRMNPEFADRLKQLDKEASyyrdecgKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKYNQ 780
Cdd:pfam01576 812 RELEEARASRDEILAQSKESEKKLK-------NLEAELLQLQEDLAASERARRQAQQERDELADEIASGASGKSALQDEK 884
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 781 QLEKKKNAQLLEEVrrredsmvdNSQHLQIEELMNALEKTRQELDATKARLA---STQQSLAEKEAHLANLRIERRKQLE 857
Cdd:pfam01576 885 RRLEARIAQLEEEL---------EEEQSNTELLNDRLRKSTLQVEQLTTELAaerSTSQKSESARQQLERQNKELKAKLQ 955
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907100919 858 EILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKDRLVHQLKQQVYRSRKH 919
Cdd:pfam01576 956 EMEGTVKSKFKSSIAALEAKIAQLEEQLEQESRERQAANKLVRRTEKKLKEVLLQVEDERRH 1017
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
715-912 |
7.78e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.51 E-value: 7.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 715 DRLKQLDKEASYYRDEcgKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKYNQQLEKKKNAQLLEEV 794
Cdd:TIGR02168 220 AELRELELALLVLRLE--ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEI 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 795 RRREdsmvdnsqhLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLAnlrierrkQLEEILEMKQEALLAAISEK 874
Cdd:TIGR02168 298 SRLE---------QQKQILRERLANLERQLEELEAQLEELESKLDELAEELA--------ELEEKLEELKEELESLEAEL 360
|
170 180 190
....*....|....*....|....*....|....*...
gi 1907100919 875 DANIALLELSASKKKKTQEEVMALKREKDRLVHQLKQQ 912
Cdd:TIGR02168 361 EELEAELEELESRLEELEEQLETLRSKVAQLELQIASL 398
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
582-692 |
8.15e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.23 E-value: 8.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 582 ALATLEEALSEKERIIERLKEQRERDDRERLEEIEsfRKENKdLKEKVNALqaeltEKESSLIDLKEHASslasagLKRD 661
Cdd:PRK12704 51 AEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQ--KLEKR-LLQKEENL-----DRKLELLEKREEEL------EKKE 116
|
90 100 110
....*....|....*....|....*....|.
gi 1907100919 662 SKLKSLEIAIEQKKEECNKLEAQLKKQAEQL 692
Cdd:PRK12704 117 KELEQKQQELEKKEEELEELIEEQLQELERI 147
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
230-639 |
1.11e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 42.75 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 230 DELRTQRD----LNHLLQQESGNRGAEHFTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESI 305
Cdd:pfam19220 20 EDLRSLKAdfsqLIEPIEAILRELPQAKSRLLELEALLAQERAAYGKLRRELAGLTRRLSAAEGELEELVARLAKLEAAL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 306 KkllemlqskglpskSLEDDNERTR-RMAEAESQVSHLEVILDQKEKENIHLREELhrrsqlqpepaktKALQTVIEMKD 384
Cdd:pfam19220 100 R--------------EAEAAKEELRiELRDKTAQAEALERQLAAETEQNRALEEEN-------------KALREEAQAAE 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 385 TKIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSnqn 464
Cdd:pfam19220 153 KALQRAEGELATARERLALLEQENRRLQALSEEQAAELAELTRRLAELETQLDATRARLRALEGQLAAEQAERERAE--- 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 465 sdckqhievlkeslTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVL 544
Cdd:pfam19220 230 --------------AQLEEAVEAHRAERASLRMKLEALTARAAATEQLLAEARNQLRDRDEAIRAAERRLKEASIERDTL 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 545 QKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKD 624
Cdd:pfam19220 296 ERRLAGLEADLERRTQQFQEMQRARAELEERAEMLTKALAAKDAALERAEERIASLSDRIAELTKRFEVERAALEQANRR 375
|
410
....*....|....*
gi 1907100919 625 LKEkvnALQAELTEK 639
Cdd:pfam19220 376 LKE---ELQRERAER 387
|
|
| Lebercilin |
pfam15619 |
Ciliary protein causing Leber congenital amaurosis disease; Lebercilin is a family of ... |
435-595 |
1.12e-03 |
|
Ciliary protein causing Leber congenital amaurosis disease; Lebercilin is a family of eukaryotic ciliary proteins. Mutations in the gene, LCA5, are implicated in the disease Leber congenital amaurosis. In photoreceptors, lebercilin is uniquely localized at the cilium that bridges the inner and outer segments. Lebercilin functions as an integral element of selective protein transport through photoreceptor cilia. Lebercilin specifically interacts with the intraflagellar transport (IFT), and disruption of IFT can lead to Leber congenital amaurosis.
Pssm-ID: 464776 [Multi-domain] Cd Length: 193 Bit Score: 41.43 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 435 KIDQLKQELSKKESELLALQTKLETL--------------SNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLE 500
Cdd:pfam15619 12 KIKELQNELAELQSKLEELRKENRLLkrlqkrqekalgkyEGTESELPQLIARHNEEVRVLRERLRRLQEKERDLERKLK 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 501 EKESFL---NKKTKQLQDLTEEKG-----TLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRdkdKQLTNLKDRVKSL 572
Cdd:pfam15619 92 EKEAELlrlRDQLKRLEKLSEDKNlaereELQKKLEQLEAKLEDKDEKIQDLERKLELENKSFR---RQLAAEKKKHKEA 168
|
170 180
....*....|....*....|...
gi 1907100919 573 QTDSSNTDTALATLEEALSEKER 595
Cdd:pfam15619 169 QEEVKILQEEIERLQQKLKEKER 191
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
583-918 |
1.39e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 583 LATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEhasslASAGLKRDS 662
Cdd:COG4717 44 RAMLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEA-----ELEELREEL 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 663 KLKSLEIAIEQKKEECNKLEAQLKKQAEQLfNQMYNPAHNIEDDSRMNPEFADRLKQLDKEASYYRDECG-KAQAEVDRL 741
Cdd:COG4717 119 EKLEKLLQLLPLYQELEALEAELAELPERL-EELEERLEELRELEEELEELEAELAELQEELEELLEQLSlATEEELQDL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 742 LEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKynqqlEKKKNAQLLEEVRRREDSMVDNSQHLQIEELMNALEKTR 821
Cdd:COG4717 198 AEELEELQQRLAELEEELEEAQEELEELEEELEQLE-----NELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLI 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 822 QELD---ATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMAL 898
Cdd:COG4717 273 LTIAgvlFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQEL 352
|
330 340
....*....|....*....|
gi 1907100919 899 KREKDRLVHQLKQQVYRSRK 918
Cdd:COG4717 353 LREAEELEEELQLEELEQEI 372
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
435-911 |
1.44e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.90 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 435 KIDQLKQELSKKESELLALQTkletlsnqnsdckqhievLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQ 514
Cdd:pfam12128 242 EFTKLQQEFNTLESAELRLSH------------------LHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKR 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 515 D-LTEEKGTLAGEIRDMKDMLEV-KERKINVLQKKIENLQEQLrdkdkqltnlkDRVKSLQTDSSNTDTALATLEEALSE 592
Cdd:pfam12128 304 DeLNGELSAADAAVAKDRSELEAlEDQHGAFLDADIETAAADQ-----------EQLPSWQSELENLEERLKALTGKHQD 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 593 KERIIERLKEQRERDDRERLEEIESFRKENKDLKEK--------VNALQAELTEK-ESSLIDLKEHASSLASAGLKRDSK 663
Cdd:pfam12128 373 VTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRqlavaeddLQALESELREQlEAGKLEFNEEEYRLKSRLGELKLR 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 664 LKSLEIA------IEQKKEECNKL-EAQLKKQAEQLFNQMYNPAHNIEDDsrmnpEFADRLKQLDKEASYYRDECGKAQA 736
Cdd:pfam12128 453 LNQATATpelllqLENFDERIERArEEQEAANAEVERLQSELRQARKRRD-----QASEALRQASRRLEERQSALDELEL 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 737 EVD----RLLEIL-KEVENEKNDKDKKIAELERHMKDQNKKVANLKYN------------QQLEKKKNAQLLEEVRRRED 799
Cdd:pfam12128 528 QLFpqagTLLHFLrKEAPDWEQSIGKVISPELLHRTDLDPEVWDGSVGgelnlygvkldlKRIDVPEWAASEEELRERLD 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 800 SMVD--NSQHLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRkqleeilemkqeallaaiSEKDan 877
Cdd:pfam12128 608 KAEEalQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQ------------------SEKD-- 667
|
490 500 510
....*....|....*....|....*....|....
gi 1907100919 878 iALLELSASKKKKTQEEVMALKREKDRLVHQLKQ 911
Cdd:pfam12128 668 -KKNKALAERKDSANERLNSLEAQLKQLDKKHQA 700
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
686-894 |
1.49e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.42 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 686 KKQAEQLFNQMYNPAHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKA---QAEVDRLLEILKEVENEKNDKDK----- 757
Cdd:pfam17380 295 KMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAmerERELERIRQEERKRELERIRQEEiamei 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 758 -KIAELERHMKDQNKKvaNLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQIEELMNALEKTRQELDATKAR-LASTQ 835
Cdd:pfam17380 375 sRMRELERLQMERQQK--NERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAReMERVR 452
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 836 QSLAEKEAHLANLRIERRKQLEEILEM-KQEALLAAISEKDANIALLELSASKKKKTQEE 894
Cdd:pfam17380 453 LEEQERQQQVERLRQQEEERKRKKLELeKEKRDRKRAEEQRRKILEKELEERKQAMIEEE 512
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
580-686 |
1.51e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 42.76 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 580 DTALA-------TLEEALSEKERIIERLKEQRER----DDRERLEEIESFRKENKDLKEKVNALQAELtEKESSLIdlkE 648
Cdd:COG0542 396 DEAAArvrmeidSKPEELDELERRLEQLEIEKEAlkkeQDEASFERLAELRDELAELEEELEALKARW-EAEKELI---E 471
|
90 100 110
....*....|....*....|....*....|....*...
gi 1907100919 649 HASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLK 686
Cdd:COG0542 472 EIQELKEELEQRYGKIPELEKELAELEEELAELAPLLR 509
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
372-594 |
1.71e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 372 KTKALQTVIEMKDTKIASLERNIRDLEDEVQMLKANgvlnTEDREEEIKQIEvykshskfmkTKIDQLKQELSKKESELL 451
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEE----YNELQAELEALQ----------AEIDKLQAEIAEAEAEIE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 452 ALQTKLETL---SNQNSDCKQHIEVLKESLTAKE--QRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGE 526
Cdd:COG3883 83 ERREELGERaraLYRSGGSVSYLDVLLGSESFSDflDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEAL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907100919 527 IRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKE 594
Cdd:COG3883 163 KAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
587-687 |
1.72e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.15 E-value: 1.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 587 EEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGL-------- 658
Cdd:COG2433 387 EKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEERreirkdre 466
|
90 100 110
....*....|....*....|....*....|.
gi 1907100919 659 --KRDSKLKSLEIAIEQKKEECNKLEAQLKK 687
Cdd:COG2433 467 isRLDREIERLERELEEERERIEELKRKLER 497
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
591-874 |
1.73e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.22 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 591 SEKERIIERLKEQ-----RERDDRERLEEIESFRKENKDLKEKVNALQAELtEKESSLIDLKEHAS--SLASAGLKRDSK 663
Cdd:PRK05771 16 SYKDEVLEALHELgvvhiEDLKEELSNERLRKLRSLLTKLSEALDKLRSYL-PKLNPLREEKKKVSvkSLEELIKDVEEE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 664 LKSLEIAIEQKKEECNKLEAQLKKQAEQLfnqmynpahnieddsrmnpEFADRLKQLDKEASYYRDEC------GKAQAE 737
Cdd:PRK05771 95 LEKIEKEIKELEEEISELENEIKELEQEI-------------------ERLEPWGNFDLDLSLLLGFKyvsvfvGTVPED 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 738 VDRLLEILKEVENEKNDKDKK------IAELERHMKDQNKKVANLKY-NQQLEKKKNAQllEEVRRREDsmvdnsqhlQI 810
Cdd:PRK05771 156 KLEELKLESDVENVEYISTDKgyvyvvVVVLKELSDEVEEELKKLGFeRLELEEEGTPS--ELIREIKE---------EL 224
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907100919 811 EELMNALEKTRQELdatkarlastqqslAEKEAHLANLRIERRKQLEEILEmKQEALL-AAISEK 874
Cdd:PRK05771 225 EEIEKERESLLEEL--------------KELAKKYLEELLALYEYLEIELE-RAEALSkFLKTDK 274
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
601-889 |
1.73e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 601 KEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLasaglkrDSKLKSLEIAIEQKKEECNK 680
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRAL-------EQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 681 LEAQLKKQAEQLFNQMYNPAHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKndkdkkia 760
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR-------- 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 761 elerhmkdqnkkvanlkynQQLEKKKNaqlleevrrredsmvdnsqhlQIEELMNALEKTRQELDATKARLASTQQSLAE 840
Cdd:COG4942 167 -------------------AELEAERA---------------------ELEALLAELEEERAALEALKAERQKLLARLEK 206
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1907100919 841 KEAHLANlRIERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKK 889
Cdd:COG4942 207 ELAELAA-ELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGK 254
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
586-905 |
1.95e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.19 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 586 LEEALSEKE---RIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEhasslasaglkrds 662
Cdd:pfam07888 36 LEECLQERAellQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEE-------------- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 663 KLKSLEIAIEQKKEECNKLEAQlKKQAEQLFNQMynpahniEDDSRMNPEfadrlKQLDKEAsyyrdECGKAQAEVDRLL 742
Cdd:pfam07888 102 KYKELSASSEELSEEKDALLAQ-RAAHEARIREL-------EEDIKTLTQ-----RVLERET-----ELERMKERAKKAG 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 743 EILKEVENEKNDKDKKIAELERHMKDQNKKVANLKyNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQIEelmnaLEKTRQ 822
Cdd:pfam07888 164 AQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELR-NSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAE-----NEALLE 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 823 ELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREK 902
Cdd:pfam07888 238 ELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGRARWAQERETLQQSAEADK 317
|
...
gi 1907100919 903 DRL 905
Cdd:pfam07888 318 DRI 320
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
346-502 |
2.17e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 2.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 346 LDQKEKENIHLREEL-HRRSQLQpepAKTKALQTVIEMKDTKIASLERNIRDLEDEVQMLKANgVLNTEDREEEIKQIEV 424
Cdd:COG1579 15 LDSELDRLEHRLKELpAELAELE---DELAALEARLEAAKTELEDLEKEIKRLELEIEEVEAR-IKKYEEQLGNVRNNKE 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907100919 425 YKSHSKfmktKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEK 502
Cdd:COG1579 91 YEALQK----EIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAE 164
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
420-547 |
2.23e-03 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 41.34 E-value: 2.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 420 KQIEVYKSHSKFMKTKIDQLKQELSKKESE----------LLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQ 489
Cdd:pfam15905 184 GKLQVTQKNLEHSKGKVAQLEEKLVSTEKEkieeksetekLLEYITELSCVSEQVEKYKLDIAQLEELLKEKNDEIESLK 263
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907100919 490 TEVDALRLRLEEKESFLNKKTKQLQDLTEEK--------GTLAGEIRDMKDMLEVKERKINVLQKK 547
Cdd:pfam15905 264 QSLEEKEQELSKQIKDLNEKCKLLESEKEELlreyeekeQTLNAELEELKEKLTLEEQEHQKLQQK 329
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
495-635 |
2.32e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 41.16 E-value: 2.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 495 LRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDmlevkerkinVLQKKIENLQEQLRDKDK----QLTNLKDRVK 570
Cdd:smart00787 145 LKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKD----------ALEEELRQLKQLEDELEDcdptELDRAKEKLK 214
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907100919 571 SLQTDSSNTDTALATLEEALSEKERIIERLKEQRErDDRERLEEIESFRKENKD--------LKEKVNALQAE 635
Cdd:smart00787 215 KLLQEIMIKVKKLEELEEELQELESKIEDLTNKKS-ELNTEIAEAEKKLEQCRGftfkeiekLKEQLKLLQSL 286
|
|
| DUF4618 |
pfam15397 |
Domain of unknown function (DUF4618); This family of proteins is found in eukaryotes. Proteins ... |
420-648 |
2.34e-03 |
|
Domain of unknown function (DUF4618); This family of proteins is found in eukaryotes. Proteins in this family are typically between 238 and 363 amino acids in length. There are two conserved sequence motifs: EYP and KCTPD.
Pssm-ID: 464704 [Multi-domain] Cd Length: 258 Bit Score: 41.09 E-value: 2.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 420 KQIEVYKSHSKFMKTKIDQLKQEL-------SKKESELLALQTKLETLsnqnsdckqhIEVLKESLtakeqraailQTEV 492
Cdd:pfam15397 6 TSLEELKKHEDFLTKLNLELIKAIqdtedstALKVRKLLQQYEKFGTI----------ISILEYSN----------KKQL 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 493 DALRLRLEEKESFLNKKTKQLQDLTEEkgtLAGEIRDMKDMLEV----KERKINVLQKKIENLQEQLRD-KDKQLTNLKD 567
Cdd:pfam15397 66 QQAKAELQEWEEKEESKLNKLEQQLEQ---LNAKIQKTQEELNFlstyKDKEYPVKAVQIANLVRQLQQlKDSQQDELDE 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 568 RVKSLQTDssntdtaLATLEEALSEKERII------------ERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAE 635
Cdd:pfam15397 143 LEEMRRMV-------LESLSRKIQKKKEKIlsslaektlspyQESLLQKTRDNQVMLKEIEQFREFIDELEEEIPKLKAE 215
|
250
....*....|...
gi 1907100919 636 LTEKESSLIDLKE 648
Cdd:pfam15397 216 VQQLQAQRQEPRE 228
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
755-913 |
2.55e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.85 E-value: 2.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 755 KDKKIAELERHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDsmvdnsqhlQIEELMNALEKTRQELDATKARLAST 834
Cdd:COG1196 223 KELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEA---------ELEELRLELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907100919 835 QQSLAEKEAHLANLRiERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKDRLVHQLKQQV 913
Cdd:COG1196 294 LAELARLEQDIARLE-ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
436-677 |
2.58e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.43 E-value: 2.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 436 IDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQD 515
Cdd:COG4372 26 IAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELES 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 516 LTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKEr 595
Cdd:COG4372 106 LQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQA- 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 596 IIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKK 675
Cdd:COG4372 185 LDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELE 264
|
..
gi 1907100919 676 EE 677
Cdd:COG4372 265 LA 266
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
281-615 |
2.70e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 2.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 281 RKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLPSKSLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREEL 360
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDLAALE 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 361 HRRSQLQpepAKTKALQTVIEMKDTKIASLERNIRDLEDEVQMLKAN-----------GVLNTEDREEEIKQIEVYKSHS 429
Cdd:COG4913 692 EQLEELE---AELEELEEELDELKGEIGRLEKELEQAEEELDELQDRleaaedlarleLRALLEERFAAALGDAVERELR 768
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 430 KFMKTKIDQLKQELSKKESELLALQTKLetlsnqNSDCKQHIEVLKESLTAKEQRAAILqTEVDALRL-RLEEK-ESFLN 507
Cdd:COG4913 769 ENLEERIDALRARLNRAEEELERAMRAF------NREWPAETADLDADLESLPEYLALL-DRLEEDGLpEYEERfKELLN 841
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 508 KKTKQlqDLTEEKGTLAGEIRDMKDMLEvkerKIN-VLQKKIENLQE--QLRDKDKQLTNLKDRVKSLQTDSSNTDTAla 584
Cdd:COG4913 842 ENSIE--FVADLLSKLRRAIREIKERID----PLNdSLKRIPFGPGRylRLEARPRPDPEVREFRQELRAVTSGASLF-- 913
|
330 340 350
....*....|....*....|....*....|....*.
gi 1907100919 585 tlEEALSEK-----ERIIERLKEQRERDDRERLEEI 615
Cdd:COG4913 914 --DEELSEArfaalKRLIERLRSEEEESDRRWRARV 947
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
758-912 |
2.81e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 41.62 E-value: 2.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 758 KIAELERHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQIEElmnALEKTRQELDATKARLASTQQS 837
Cdd:PRK12705 37 RILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEE---QLDARAEKLDNLENQLEEREKA 113
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907100919 838 LAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKDRLVHQLKQQ 912
Cdd:PRK12705 114 LSARELELEELEKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEADLEAERKAQNILAQAMQR 188
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
416-869 |
2.86e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 41.36 E-value: 2.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 416 EEEIKQIEVYKSHSKFMKTK--IDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAkeqraaiLQTEVD 493
Cdd:PRK04778 85 EEQLFEAEELNDKFRFRKAKheINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRE-------LRKSLL 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 494 ALRLRLEEKESFLNKKTKQLQDLTEEKGTL--AGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDK----QLTNLKD 567
Cdd:PRK04778 158 ANRFSFGPALDELEKQLENLEEEFSQFVELteSGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTelpdQLQELKA 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 568 RVKSLQT-----DSSNTDTALATLEEALSEKERIIERLkeqrerddrerleEIESFRKENKDLKEKVNALQaELTEKEss 642
Cdd:PRK04778 238 GYRELVEegyhlDHLDIEKEIQDLKEQIDENLALLEEL-------------DLDEAEEKNEEIQERIDQLY-DILERE-- 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 643 lIDLKEHAsslasaglkrDSKLKSLEIAIEQKKEECNKLEAQLkkqaeQLFNQMYNPAHNIEDDSRmnpEFADRLKQLDK 722
Cdd:PRK04778 302 -VKARKYV----------EKNSDTLPDFLEHAKEQNKELKEEI-----DRVKQSYTLNESELESVR---QLEKQLESLEK 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 723 EASYYRDECGKA-------QAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKynqqlekkknaQLLEEVR 795
Cdd:PRK04778 363 QYDEITERIAEQeiayselQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYR-----------NKLHEIK 431
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 796 RR----------ED--SMVDNSQHlQIEELMNALEKTRQELDAtkarlasTQQSLAEKEAHLANLRierrkqlEEILEMK 863
Cdd:PRK04778 432 RYleksnlpglpEDylEMFFEVSD-EIEALAEELEEKPINMEA-------VNRLLEEATEDVETLE-------EETEELV 496
|
....*.
gi 1907100919 864 QEALLA 869
Cdd:PRK04778 497 ENATLT 502
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
436-677 |
3.06e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.04 E-value: 3.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 436 IDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQD 515
Cdd:COG4372 33 LRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 516 LTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSN-----TDTALATLEEAL 590
Cdd:COG4372 113 LQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQAlseaeAEQALDELLKEA 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 591 SEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIA 670
Cdd:COG4372 193 NRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKD 272
|
....*..
gi 1907100919 671 IEQKKEE 677
Cdd:COG4372 273 TEEEELE 279
|
|
| CagA_N |
pfam18971 |
CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial ... |
495-795 |
3.42e-03 |
|
CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial virulence determinant and critical for gastric carcinogenesis. X-ray crystallographic analysis of the N-terminal CagA fragment (residues 1-876) revealed that the region has a structure comprised of three discrete domains. Domain I constitutes a mobile CagA N terminus, while Domain II tethers CagA to the plasma membrane by interacting with membrane phosphatidylserine. Domain III interacts intramolecularly with the intrinsically disordered C-terminal region, and this interaction potentiates the pathogenic scaffold/hub function of CagA.
Pssm-ID: 408741 [Multi-domain] Cd Length: 876 Bit Score: 41.30 E-value: 3.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 495 LRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDM-KDMLEVKER-KINVLQKKIENLQEQLRDKDkqltNLKDRV-KS 571
Cdd:pfam18971 561 LENKLTAKGLSLQEANKLIKDFLSSNKELAGKALNFnKAVAEAKSTgNYDEVKKAQKDLEKSLRKRE----HLEKEVeKK 636
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 572 LQTDSSNTDTALATlEEALSEKERIIERLKEQRERDDRErLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHAS 651
Cdd:pfam18971 637 LESKSGNKNKMEAK-AQANSQKDEIFALINKEANRDARA-IAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEFKNGKN 714
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 652 SLASaglKRDSKLKSLEIAIE---------QKKEECNKLEAQLKKQAEQLFNQMYNPAHNIED---DSRMNPEFADRLKQ 719
Cdd:pfam18971 715 KDFS---KAEETLKALKGSVKdlginpewiSKVENLNAALNEFKNGKNKDFSKVTQAKSDLENsvkDVIINQKVTDKVDN 791
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907100919 720 LDKEASyyrdeCGKAQAEVDRLLEILKEVENEKNDKdkkiaelerhMKDQNKKvanlkyNQQLEKKKNAQLLEEVR 795
Cdd:pfam18971 792 LNQAVS-----VAKAMGDFSRVEQVLADLKNFSKEQ----------LAQQAQK------NEDFNTGKNSELYQSVK 846
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
417-857 |
4.99e-03 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 40.97 E-value: 4.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 417 EEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLT-------AKEQRAAILQ 489
Cdd:PTZ00440 519 NNFKNIEDYYITIEGLKNEIEGLIELIKYYLQSIETLIKDEKLKRSMKNDIKNKIKYIEENVDhikdiisLNDEIDNIIQ 598
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 490 TEVDALRLRLEEKESFLNKKTKQLQDLTE-----EKGTLAGEIRDMKDMLEVKE---------RKINVLQKKIENLQEQL 555
Cdd:PTZ00440 599 QIEELINEALFNKEKFINEKNDLQEKVKYilnkfYKGDLQELLDELSHFLDDHKylyheakskEDLQTLLNTSKNEYEKL 678
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 556 rdKDKQLTNLKDRVKSLQTDSSNTdtalatleeaLSEKERIIERLKEQRERDDRERLEEIesfRKENKDLKEKVNALQAE 635
Cdd:PTZ00440 679 --EFMKSDNIDNIIKNLKKELQNL----------LSLKENIIKKQLNNIEQDISNSLNQY---TIKYNDLKSSIEEYKEE 743
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 636 LTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKkeecnkleAQLKKQAEQLFNQMYNPAHNIEDDSRMNpefAD 715
Cdd:PTZ00440 744 EEKLEVYKHQIINRKNEFILHLYENDKDLPDGKNTYEEF--------LQYKDTILNKENKISNDINILKENKKNN---QD 812
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 716 RLKQLDKEASYYRDECGKAQAEVDRLLEI---------LKEVENEKNDKDKKIAELERHMKDQNKKVANLKY--NQQLEK 784
Cdd:PTZ00440 813 LLNSYNILIQKLEAHTEKNDEELKQLLQKfptedenlnLKELEKEFNENNQIVDNIIKDIENMNKNINIIKTlnIAINRS 892
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907100919 785 KKNAQLLEEVRRREDSMVDN-SQHLQIEELMNALEKTRQE--LDATKARLASTQQSLAekEAHLANLRIERRKQLE 857
Cdd:PTZ00440 893 NSNKQLVEHLLNNKIDLKNKlEQHMKIINTDNIIQKNEKLnlLNNLNKEKEKIEKQLS--DTKINNLKMQIEKTLE 966
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
155-449 |
5.05e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 5.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 155 KELQRENDLLRKELDIKDSKLGSSMNSIKTFWSPELKKERVLRKEEAARMSVlkEQMRVSHEENQHLQLTIQALQDELRT 234
Cdd:PTZ00121 1571 KAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKA--EELKKAEEEKKKVEQLKKKEAEEKKK 1648
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 235 QRDLNHlLQQESGNRGAEhftiELTEENFRRLQAEHDRQAKElflLRKTLEEMELRIETQKQtlnaRDESIKKLLEMLQS 314
Cdd:PTZ00121 1649 AEELKK-AEEENKIKAAE----EAKKAEEDKKKAEEAKKAEE---DEKKAAEALKKEAEEAK----KAEELKKKEAEEKK 1716
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 315 KGLPSKSLEDDN----ERTRRMAEAESQVSHlEVILDQKEKENI-HLREELHRRSQLQPEPAKTKALQTVIEMKDTKIAS 389
Cdd:PTZ00121 1717 KAEELKKAEEENkikaEEAKKEAEEDKKKAE-EAKKDEEEKKKIaHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRME 1795
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907100919 390 LERNIRDLEDEVQMLKANGVLNT----EDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESE 449
Cdd:PTZ00121 1796 VDKKIKDIFDNFANIIEGGKEGNlvinDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNE 1859
|
|
| XRN1 |
COG5049 |
5'-3' exonuclease [Replication, recombination and repair]; |
238-440 |
5.37e-03 |
|
5'-3' exonuclease [Replication, recombination and repair];
Pssm-ID: 227382 [Multi-domain] Cd Length: 953 Bit Score: 40.68 E-value: 5.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 238 LNHLLQQESGNRGAEHFTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGL 317
Cdd:COG5049 366 LAILGSFEDDIFKKDHIQEERKNESLERFSLRKERKEGLKGMPRVVYEQKKLIGSIKPTLMDQLQEKKSPDLPDEEFIDT 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 318 PSKSLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELHRRSQLQPEPAKTKALQTVIEMKDTKIASlernirDL 397
Cdd:COG5049 446 LALPKDLDMKNHELFLKRFANDLGLSISKAIKSKGNYSLEMDIASDSPDEDEEEFESEVDSIRKIPDKYVNI------IV 519
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1907100919 398 EDEVQmlkaNGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLK 440
Cdd:COG5049 520 EEEEE----NETEKTVNLRFPGWKERYYTSKLHFTTDSEEKIR 558
|
|
| MPS2 |
pfam17060 |
Monopolar spindle protein 2; Is a fungal transmembrane protein which is part of the component ... |
472-607 |
6.18e-03 |
|
Monopolar spindle protein 2; Is a fungal transmembrane protein which is part of the component of the spindle pole body (SPB) required for the insertion of the nascent SPB into the nuclear envelope and for the proper execution of spindle pole body (SPB) duplication. It seems that Mps2-Spc24 interaction may contribute to the localization of Spc24 and other kinetochore components to the inner plaque of the SPB.
Pssm-ID: 407228 [Multi-domain] Cd Length: 340 Bit Score: 39.96 E-value: 6.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 472 EVLKESLTAKEQRAAILQTEVDALRLRLEEKES------FLNKKTKQLQDLTEekgTLAGEIRDMKDMLEVKERKINVLQ 545
Cdd:pfam17060 105 ELKEDVKSSPRSEADSLGTPIKVDLLRNLKPQEspetprRINRKYKSLELRVE---SMKDELEFKDETIMEKDRELTELT 181
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907100919 546 KKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDT----ALATLEEALSEKERIIERLKEQRERD 607
Cdd:pfam17060 182 STISKLKDKYDFLSREFEFYKQHHEHGGNNSIKTATkhefIISELKRKLQEQNRLIRILQEQIQFD 247
|
|
| GAS |
pfam13851 |
Growth-arrest specific micro-tubule binding; This family is the highly conserved central ... |
447-600 |
6.29e-03 |
|
Growth-arrest specific micro-tubule binding; This family is the highly conserved central region of a number of metazoan proteins referred to as growth-arrest proteins. In mouse, Gas8 is predominantly a testicular protein, whose expression is developmentally regulated during puberty and spermatogenesis. In humans, it is absent in infertile males who lack the ability to generate gametes. The localization of Gas8 in the motility apparatus of post-meiotic gametocytes and mature spermatozoa, together with the detection of Gas8 also in cilia at the apical surfaces of epithelial cells lining the pulmonary bronchi and Fallopian tubes suggests that the Gas8 protein may have a role in the functioning of motile cellular appendages. Gas8 is a microtubule-binding protein localized to regions of dynein regulation in mammalian cells.
Pssm-ID: 464001 [Multi-domain] Cd Length: 200 Bit Score: 39.12 E-value: 6.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 447 ESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQ----------TEVDALRLRLEEKESFLNKKTKQLQDL 516
Cdd:pfam13851 32 KEEIAELKKKEERNEKLMSEIQQENKRLTEPLQKAQEEVEELRkqlenyekdkQSLKNLKARLKVLEKELKDLKWEHEVL 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 517 TEEKGTLAGEIRDMKDM-----LEVKER---KINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDtalATLEE 588
Cdd:pfam13851 112 EQRFEKVERERDELYDKfeaaiQDVQQKtglKNLLLEKKLQALGETLEKKEAQLNEVLAAANLDPDALQAVT---EKLED 188
|
170
....*....|..
gi 1907100919 589 ALSEKERIIERL 600
Cdd:pfam13851 189 VLESKNQLIKDL 200
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
219-554 |
6.39e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.49 E-value: 6.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 219 QHlQLTIQALQDELRTQRDLNHLLQQESGNRGAEHFTIELTEENFRRLQAEHDRQAKELfllrktLEEMELRIETQKQTL 298
Cdd:pfam17380 279 QH-QKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIY------AEQERMAMERERELE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 299 NARDESIKKLLEMLqskglpsksleddneRTRRMAEAESQVSHLEVILDQKEKENIHLREELH--RRSQLQPEPAKTKAL 376
Cdd:pfam17380 352 RIRQEERKRELERI---------------RQEEIAMEISRMRELERLQMERQQKNERVRQELEaaRKVKILEEERQRKIQ 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 377 QTVIEMKdtKIASLERNIRdlEDEVQMLKangvlntEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTK 456
Cdd:pfam17380 417 QQKVEME--QIRAEQEEAR--QREVRRLE-------EERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRD 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 457 LETLSNQNSDC-KQHIEVLKESLTAKEQRAAILQTEVDALRLRL-EEKESFLNKKTKQLQDLTEEKGTLAGEIR---DMK 531
Cdd:pfam17380 486 RKRAEEQRRKIlEKELEERKQAMIEEERKRKLLEKEMEERQKAIyEEERRREAEEERRKQQEMEERRRIQEQMRkatEER 565
|
330 340
....*....|....*....|...
gi 1907100919 532 DMLEVKERKINVLQKKIENLQEQ 554
Cdd:pfam17380 566 SRLEAMEREREMMRQIVESEKAR 588
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
544-663 |
7.83e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 40.32 E-value: 7.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 544 LQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEiesFRKENK 623
Cdd:PRK11448 147 LQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQK---RKEITD 223
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1907100919 624 DLKEKVnalqaELTEKES-SLIDlkehaSSLASAGLKRDSK 663
Cdd:PRK11448 224 QAAKRL-----ELSEEETrILID-----QQLRKAGWEADSK 254
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
441-839 |
8.10e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.33 E-value: 8.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 441 QELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQ---RAAILqtEVDALRLRLEEKESFLNKKTKQLQDLT 517
Cdd:PRK04863 837 AELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRllpRLNLL--ADETLADRVEEIREQLDEAEEAKRFVQ 914
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 518 EEKGTLAgEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQ----TDSSNTDTALATLEEALSEK 593
Cdd:PRK04863 915 QHGNALA-QLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAhfsyEDAAEMLAKNSDLNEKLRQR 993
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 594 eriIERLKEQRERDdRERLEEIES-FRKENK---DLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKlkSLEI 669
Cdd:PRK04863 994 ---LEQAEQERTRA-REQLRQAQAqLAQYNQvlaSLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRD--ELHA 1067
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 670 AIEQKKEECNKLEAQLKKQAEQLFNQmynpahnieddsrmnpefADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVE 749
Cdd:PRK04863 1068 RLSANRSRRNQLEKQLTFCEAEMDNL------------------TKKLRKLERDYHEMREQVVNAKAGWCAVLRLVKDNG 1129
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 750 NEKNDKDKKIAEL----ERHMKDqnKKVANLKYNQQlekkKNAQLLEEVRRREDS---------MVDNSQHLQ------- 809
Cdd:PRK04863 1130 VERRLHRRELAYLsadeLRSMSD--KALGALRLAVA----DNEHLRDVLRLSEDPkrperkvqfYIAVYQHLRerirqdi 1203
|
410 420 430
....*....|....*....|....*....|....*....
gi 1907100919 810 ---------IEELMNALEKTRQELDATKARLASTQQSLA 839
Cdd:PRK04863 1204 irtddpveaIEQMEIELSRLTEELTSREQKLAISSESVA 1242
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
712-916 |
8.55e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.00 E-value: 8.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 712 EFADRLKQLDKEASYYRDECGKAQAEVDRLLE--ILKEVENEKNDKDKKIAELerhmkdqNKKVANLKYNQQLEKKKNAQ 789
Cdd:COG3206 172 EARKALEFLEEQLPELRKELEEAEAALEEFRQknGLVDLSEEAKLLLQQLSEL-------ESQLAEARAELAEAEARLAA 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 790 LLEEVRRREDSMVDNSQHLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEIL---EMKQEA 866
Cdd:COG3206 245 LRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILaslEAELEA 324
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1907100919 867 LLAAISEKDANIALLELSASKKKKTQEEVMALKREkdrlvHQLKQQVYRS 916
Cdd:COG3206 325 LQAREASLQAQLAQLEARLAELPELEAELRRLERE-----VEVARELYES 369
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
471-692 |
8.80e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 39.51 E-value: 8.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 471 IEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIEN 550
Cdd:COG1340 3 TDELSSSLEELEEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEERDE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 551 LQEQLRDKDKQLTNLKDRVKSLQTDSSNTDT---ALATLE-----------------EALSEKERIIERLKEQRERDD-- 608
Cdd:COG1340 83 LNEKLNELREELDELRKELAELNKAGGSIDKlrkEIERLEwrqqtevlspeeekelvEKIKELEKELEKAKKALEKNEkl 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 609 RERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKQ 688
Cdd:COG1340 163 KELRAELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEAQEKADELHEEIIELQKELREL 242
|
....
gi 1907100919 689 AEQL 692
Cdd:COG1340 243 RKEL 246
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
433-781 |
9.06e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 40.28 E-value: 9.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 433 KTKIDQLKQELSKKESELLALQTKLETLSNQNSDckqhieVLKESLTAkeqraailqtevdalrLRLEEKESFLNKKTKQ 512
Cdd:PRK11281 79 KEETEQLKQQLAQAPAKLRQAQAELEALKDDNDE------ETRETLST----------------LSLRQLESRLAQTLDQ 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 513 LQDLTEEKGTLAGEIRDMKdmlEVKERkinvLQKKIENLQEQLRDKDKQLTNLKDRVKSL---QTDSSNTDTALATLEEA 589
Cdd:PRK11281 137 LQNAQNDLAEYNSQLVSLQ---TQPER----AQAALYANSQRLQQIRNLLKGGKVGGKALrpsQRVLLQAEQALLNAQND 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 590 LSEKE-----RIIERLKEQRErddrERLEEIESFRKENKDLKEKVNALQAELTEKEsslidLKEHASSLASAGLKRDSKL 664
Cdd:PRK11281 210 LQRKSlegntQLQDLLQKQRD----YLTARIQRLEHQLQLLQEAINSKRLTLSEKT-----VQEAQSQDEAARIQANPLV 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 665 KSlEIAIEQK--------KEECNKL---EAQLKK------QAEQ------------------LFNQMYNPAHNIEdDSRM 709
Cdd:PRK11281 281 AQ-ELEINLQlsqrllkaTEKLNTLtqqNLRVKNwldrltQSERnikeqisvlkgslllsriLYQQQQALPSADL-IEGL 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907100919 710 NPEFAD-RLKQLDkeASYYRDECGKAQAEVDRLLEILK-EVENEKNDKDKKIAELERHMKDQ-NKKVA-------NLKYN 779
Cdd:PRK11281 359 ADRIADlRLEQFE--INQQRDALFQPDAYIDKLEAGHKsEVTDEVRDALLQLLDERRELLDQlNKQLNnqlnlaiNLQLN 436
|
..
gi 1907100919 780 QQ 781
Cdd:PRK11281 437 QQ 438
|
|
| |
