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Conserved domains on  [gi|1907118306|ref|XP_036015883|]
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target of Nesh-SH3 isoform X11 [Mus musculus]

Protein Classification

fibronectin type III domain-containing protein( domain architecture ID 10440918)

fibronectin type III (FN3) domain-containing protein similar to human Target of Nesh-SH3 (Tarsh) and Drosophila melanogaster cytokine receptor (protein domeless)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PHA03247 super family cl33720
large tegument protein UL36; Provisional
507-889 3.66e-12

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 71.89  E-value: 3.66e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  507 PSTPKRQSTPKPPRVKPAPEPETRPS--AQTTKAPRKTKKPGHHRLRRPKTTR-SPEVPKSKPALEPATVTPEILVPKIV 583
Cdd:PHA03247  2553 PPLPPAAPPAAPDRSVPPPRPAPRPSepAVTSRARRPDAPPQSARPRAPVDDRgDPRGPAPPSPLPPDTHAPDPPPPSPS 2632
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  584 PKPPQ----KPKATRRPEVPQVKPAHEPVTFGSEAPALAIVTTTDIEPVITRTKA------SVTTLAPKPPRPRTHRQRT 653
Cdd:PHA03247  2633 PAANEpdphPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAarptvgSLTSLADPPPPPPTPEPAP 2712
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  654 KYKTTQSPKIP-------HSKPADLGPITSEPPLASTTKKVRRPRPKPQTTPHPEVPHTILVPATSLEPfIITEAPGTTL 726
Cdd:PHA03247  2713 HALVSATPLPPgpaaarqASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPR-RLTRPAVASL 2791
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  727 VPKLPQQPDYPHPKPKT--------TRSPAASPTELVPTPV-------------FEPVTPL-----------KEDPVTTI 774
Cdd:PHA03247  2792 SESRESLPSPWDPADPPaavlapaaALPPAASPAGPLPPPTsaqptapppppgpPPPSLPLggsvapggdvrRRPPSRSP 2871
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  775 ASKISQRTHRPRPRPRPRPRPRPRPKATLSPQAPETKTVPAVVLEPVTLRPEVQVTTLAPQKTQKKHRPSPKPKPVPSPE 854
Cdd:PHA03247  2872 AAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAG 2951
                          410       420       430       440
                   ....*....|....*....|....*....|....*....|....*..
gi 1907118306  855 VTESKPVLPRVREPVTLRTETWVT------------TKAPKTPKRTR 889
Cdd:PHA03247  2952 AGEPSGAVPQPWLGALVPGRVAVPrfrvpqpapsreAPASSTPPLTG 2998
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
1375-1466 2.90e-10

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


:

Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 58.28  E-value: 2.90e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306 1375 NPPTNLTVVTVEgcPSFVILDWEKPLNDT--VTEYEVISRENGSFSGKNKSIQITNQTFSTVENLKPDTSYEFQVKPKNP 1452
Cdd:cd00063      2 SPPTNLRVTDVT--STSVTLSWTPPEDDGgpITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNG 79
                           90
                   ....*....|....
gi 1907118306 1453 LGEGPASNTVAFST 1466
Cdd:cd00063     80 GGESPPSESVTVTT 93
PHA03247 super family cl33720
large tegument protein UL36; Provisional
954-1397 6.93e-06

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.09  E-value: 6.93e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  954 RTRRPHPRPK-TTASTGVSESKSAPTELQSLVLKPVTSPSLEIIQSQSVSddlelvAFSTESPQKTIAPR----QTTSMP 1028
Cdd:PHA03247  2585 RARRPDAPPQsARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPA------ANEPDPHPPPTVPPperpRDDPAP 2658
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306 1029 PKLKTPH-SRMPAKEPVPKEPLHTTSKPKMPPSPEVADTTSVPKDERLSLKPDPEVTHSETVLPPVTF--RVEPPKTTIA 1105
Cdd:PHA03247  2659 GRVSRPRrARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAaaRQASPALPAA 2738
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306 1106 PLeTRGIPLIPVI--SPRPSQEELQTAMEETDQSTQELFTTKIPRTTELAKTTQAPHRlhTAPVRPRIPGrPHGRPALNK 1183
Cdd:PHA03247  2739 PA-PPAVPAGPATpgGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESR--ESLPSPWDPA-DPPAAVLAP 2814
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306 1184 TTTRPDKTKPRGTSHKNGvgTGTKQAPKPPSPGRNASVDSHATRKPGSvSGTRRPPiphrhSSTRPVSPERRPLPPNNVT 1263
Cdd:PHA03247  2815 AAALPPAASPAGPLPPPT--SAQPTAPPPPPGPPPPSLPLGGSVAPGG-DVRRRPP-----SRSPAAKPAAPARPPVRRL 2886
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306 1264 GKPGRAGIVSSSRVTSPPLKATLHPIGTATARPGAEQKEPTAPASEEEFGTTTDFSSSPTKETDPLGKPRFIGPHvryiP 1343
Cdd:PHA03247  2887 ARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQ----P 2962
                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1907118306 1344 KPENKPCSITDSVRRFPTEEATEGNATSPPQNPPTNLTVVTVEGCPSFVILDWE 1397
Cdd:PHA03247  2963 WLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLALHEE 3016
fn3 pfam00041
Fibronectin type III domain;
116-195 1.81e-04

Fibronectin type III domain;


:

Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 41.63  E-value: 1.81e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  116 KPLQLVVGTLTPSSVFLSWgflinphhdwTLPSHCPSD-RFYTIRYREKDKEKKWIFQLCPATET--IVENLKPNTVYEF 192
Cdd:pfam00041    2 APSNLTVTDVTSTSLTVSW----------TPPPDGNGPiTGYEVEYRPKNSGEPWNEITVPGTTTsvTLTGLKPGTEYEV 71

                   ...
gi 1907118306  193 GVK 195
Cdd:pfam00041   72 RVQ 74
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
507-889 3.66e-12

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 71.89  E-value: 3.66e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  507 PSTPKRQSTPKPPRVKPAPEPETRPS--AQTTKAPRKTKKPGHHRLRRPKTTR-SPEVPKSKPALEPATVTPEILVPKIV 583
Cdd:PHA03247  2553 PPLPPAAPPAAPDRSVPPPRPAPRPSepAVTSRARRPDAPPQSARPRAPVDDRgDPRGPAPPSPLPPDTHAPDPPPPSPS 2632
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  584 PKPPQ----KPKATRRPEVPQVKPAHEPVTFGSEAPALAIVTTTDIEPVITRTKA------SVTTLAPKPPRPRTHRQRT 653
Cdd:PHA03247  2633 PAANEpdphPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAarptvgSLTSLADPPPPPPTPEPAP 2712
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  654 KYKTTQSPKIP-------HSKPADLGPITSEPPLASTTKKVRRPRPKPQTTPHPEVPHTILVPATSLEPfIITEAPGTTL 726
Cdd:PHA03247  2713 HALVSATPLPPgpaaarqASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPR-RLTRPAVASL 2791
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  727 VPKLPQQPDYPHPKPKT--------TRSPAASPTELVPTPV-------------FEPVTPL-----------KEDPVTTI 774
Cdd:PHA03247  2792 SESRESLPSPWDPADPPaavlapaaALPPAASPAGPLPPPTsaqptapppppgpPPPSLPLggsvapggdvrRRPPSRSP 2871
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  775 ASKISQRTHRPRPRPRPRPRPRPRPKATLSPQAPETKTVPAVVLEPVTLRPEVQVTTLAPQKTQKKHRPSPKPKPVPSPE 854
Cdd:PHA03247  2872 AAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAG 2951
                          410       420       430       440
                   ....*....|....*....|....*....|....*....|....*..
gi 1907118306  855 VTESKPVLPRVREPVTLRTETWVT------------TKAPKTPKRTR 889
Cdd:PHA03247  2952 AGEPSGAVPQPWLGALVPGRVAVPrfrvpqpapsreAPASSTPPLTG 2998
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
1375-1466 2.90e-10

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 58.28  E-value: 2.90e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306 1375 NPPTNLTVVTVEgcPSFVILDWEKPLNDT--VTEYEVISRENGSFSGKNKSIQITNQTFSTVENLKPDTSYEFQVKPKNP 1452
Cdd:cd00063      2 SPPTNLRVTDVT--STSVTLSWTPPEDDGgpITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNG 79
                           90
                   ....*....|....
gi 1907118306 1453 LGEGPASNTVAFST 1466
Cdd:cd00063     80 GGESPPSESVTVTT 93
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
1376-1456 8.76e-08

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 51.08  E-value: 8.76e-08
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  1376 PPTNLTVVTVEgcPSFVILDWEKPLNDTVTEYEV-ISRENGSFSGKNKSIQITNQTFS-TVENLKPDTSYEFQVKPKNPL 1453
Cdd:smart00060    3 PPSNLRVTDVT--STSVTLSWEPPPDDGITGYIVgYRVEYREEGSEWKEVNVTPSSTSyTLTGLKPGTEYEFRVRAVNGA 80

                    ...
gi 1907118306  1454 GEG 1456
Cdd:smart00060   81 GEG 83
fn3 pfam00041
Fibronectin type III domain;
1376-1459 1.16e-06

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 47.79  E-value: 1.16e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306 1376 PPTNLTVVTVEgcPSFVILDWEKP--LNDTVTEYEVISRENGSFSGKNkSIQITNQTFS-TVENLKPDTSYEFQVKPKNP 1452
Cdd:pfam00041    2 APSNLTVTDVT--STSLTVSWTPPpdGNGPITGYEVEYRPKNSGEPWN-EITVPGTTTSvTLTGLKPGTEYEVRVQAVNG 78

                   ....*..
gi 1907118306 1453 LGEGPAS 1459
Cdd:pfam00041   79 GGEGPPS 85
PHA03247 PHA03247
large tegument protein UL36; Provisional
954-1397 6.93e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.09  E-value: 6.93e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  954 RTRRPHPRPK-TTASTGVSESKSAPTELQSLVLKPVTSPSLEIIQSQSVSddlelvAFSTESPQKTIAPR----QTTSMP 1028
Cdd:PHA03247  2585 RARRPDAPPQsARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPA------ANEPDPHPPPTVPPperpRDDPAP 2658
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306 1029 PKLKTPH-SRMPAKEPVPKEPLHTTSKPKMPPSPEVADTTSVPKDERLSLKPDPEVTHSETVLPPVTF--RVEPPKTTIA 1105
Cdd:PHA03247  2659 GRVSRPRrARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAaaRQASPALPAA 2738
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306 1106 PLeTRGIPLIPVI--SPRPSQEELQTAMEETDQSTQELFTTKIPRTTELAKTTQAPHRlhTAPVRPRIPGrPHGRPALNK 1183
Cdd:PHA03247  2739 PA-PPAVPAGPATpgGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESR--ESLPSPWDPA-DPPAAVLAP 2814
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306 1184 TTTRPDKTKPRGTSHKNGvgTGTKQAPKPPSPGRNASVDSHATRKPGSvSGTRRPPiphrhSSTRPVSPERRPLPPNNVT 1263
Cdd:PHA03247  2815 AAALPPAASPAGPLPPPT--SAQPTAPPPPPGPPPPSLPLGGSVAPGG-DVRRRPP-----SRSPAAKPAAPARPPVRRL 2886
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306 1264 GKPGRAGIVSSSRVTSPPLKATLHPIGTATARPGAEQKEPTAPASEEEFGTTTDFSSSPTKETDPLGKPRFIGPHvryiP 1343
Cdd:PHA03247  2887 ARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQ----P 2962
                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1907118306 1344 KPENKPCSITDSVRRFPTEEATEGNATSPPQNPPTNLTVVTVEGCPSFVILDWE 1397
Cdd:PHA03247  2963 WLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLALHEE 3016
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
507-703 2.53e-05

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 411408 [Multi-domain]  Cd Length: 557  Bit Score: 49.00  E-value: 2.53e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  507 PSTPKRQSTPKPPrvkpAPEPETRPSAQTTKAPRKTKkpghhrLRRPKTTRSPEVPKSKPALEP------ATVTPEILVP 580
Cdd:NF033839   281 QDTPKEPGNKKPS----APKPGMQPSPQPEKKEVKPE------PETPKPEVKPQLEKPKPEVKPqpekpkPEVKPQLETP 350
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  581 KIVPKP-PQKPKATRRPEV----PQVKPahEPVTFGSEAPALAIVTTTDIEPVITRTKASVTTlAPKPPRPRTHRQRTKY 655
Cdd:NF033839   351 KPEVKPqPEKPKPEVKPQPekpkPEVKP--QPETPKPEVKPQPEKPKPEVKPQPEKPKPEVKP-QPEKPKPEVKPQPEKP 427
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1907118306  656 KTTQSPKI----PHSKPADLGPITSEPPLASTTKKVRRP---RPKPQTTPHPEVP 703
Cdd:NF033839   428 KPEVKPQPekpkPEVKPQPEKPKPEVKPQPETPKPEVKPqpeKPKPEVKPQPEKP 482
fn3 pfam00041
Fibronectin type III domain;
116-195 1.81e-04

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 41.63  E-value: 1.81e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  116 KPLQLVVGTLTPSSVFLSWgflinphhdwTLPSHCPSD-RFYTIRYREKDKEKKWIFQLCPATET--IVENLKPNTVYEF 192
Cdd:pfam00041    2 APSNLTVTDVTSTSLTVSW----------TPPPDGNGPiTGYEVEYRPKNSGEPWNEITVPGTTTsvTLTGLKPGTEYEV 71

                   ...
gi 1907118306  193 GVK 195
Cdd:pfam00041   72 RVQ 74
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
114-195 2.52e-04

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 41.45  E-value: 2.52e-04
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306   114 PRKPLQLVVGTLTPSSVFLSWgflinphhdwtLPSHCPSDRFYTIRYREKDKEKKWIFQLCPA----TETIVENLKPNTV 189
Cdd:smart00060    1 PSPPSNLRVTDVTSTSVTLSW-----------EPPPDDGITGYIVGYRVEYREEGSEWKEVNVtpssTSYTLTGLKPGTE 69

                    ....*.
gi 1907118306   190 YEFGVK 195
Cdd:smart00060   70 YEFRVR 75
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
114-195 2.84e-04

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 41.33  E-value: 2.84e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  114 PRKPLQLVVGTLTPSSVFLSWgfliNPHHDWTLPSHcpsdrFYTIRYREKDKE--KKWIFQLCPATETIVENLKPNTVYE 191
Cdd:cd00063      1 PSPPTNLRVTDVTSTSVTLSW----TPPEDDGGPIT-----GYVVEYREKGSGdwKEVEVTPGSETSYTLTGLKPGTEYE 71

                   ....
gi 1907118306  192 FGVK 195
Cdd:cd00063     72 FRVR 75
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
868-1158 6.76e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 436069 [Multi-domain]  Cd Length: 480  Bit Score: 41.06  E-value: 6.76e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  868 PVTLRTETWVTT------KAPKTPKRTRRPRPKPQTTPTPETPLTKPVAATDLEPSALSTEVPATVVLATALTPVTLRTK 941
Cdd:pfam17823   65 PVTLTKGTSAAHlnstevKAEHTPHGTDLSEPATREGAADGAASRALAAAASSSPSSAAQSAPTTIAGLPSLASSAPMAA 144
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  942 APKTTTLApnvqrtrrphpRPKTTASTGVSESKSAPTELQSL---VLKPVTSPSLEIIQSQSVSDDLELVAFSTESP-QK 1017
Cdd:pfam17823  145 APRTNAAS-----------NAPTAAASSTAAASGAPTTAASSapaTLTPASGISTAATATGHPAAGTALAAVGNSSPaAG 213
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306 1018 TIAPRQTTSMPPKLKT-------------------PHSRMPAkePVPKEPLHTTSKPKMPPS-PEVADTTS-VPKDERL- 1075
Cdd:pfam17823  214 TVTAAVGTVTPAALATlaaaagtvasaagtintgdPHARRLS--PAKHMPSDTSARNPAAPSgAQAQGLIIqVSTDQPVh 291
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306 1076 SLKPDPEVTHSETVLPPVTFRV-----------------EPPKTTIAPLETRGIPLI----PVISPRPSQEELQTAMEET 1134
Cdd:pfam17823  292 NTAGEPTPSPSNTTLEPNTPKSvastnlavvtttkaqakEPSASPVPVLHTSMIPEVeatsPTTQPSPLLPTQGAAGPGI 371
                          330       340
                   ....*....|....*....|....
gi 1907118306 1135 DQSTQELFTTKIPRTTELAKTTQA 1158
Cdd:pfam17823  372 LLAPDQVATDATAGTASAGPTPRS 395
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
507-889 3.66e-12

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 71.89  E-value: 3.66e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  507 PSTPKRQSTPKPPRVKPAPEPETRPS--AQTTKAPRKTKKPGHHRLRRPKTTR-SPEVPKSKPALEPATVTPEILVPKIV 583
Cdd:PHA03247  2553 PPLPPAAPPAAPDRSVPPPRPAPRPSepAVTSRARRPDAPPQSARPRAPVDDRgDPRGPAPPSPLPPDTHAPDPPPPSPS 2632
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  584 PKPPQ----KPKATRRPEVPQVKPAHEPVTFGSEAPALAIVTTTDIEPVITRTKA------SVTTLAPKPPRPRTHRQRT 653
Cdd:PHA03247  2633 PAANEpdphPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAarptvgSLTSLADPPPPPPTPEPAP 2712
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  654 KYKTTQSPKIP-------HSKPADLGPITSEPPLASTTKKVRRPRPKPQTTPHPEVPHTILVPATSLEPfIITEAPGTTL 726
Cdd:PHA03247  2713 HALVSATPLPPgpaaarqASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPR-RLTRPAVASL 2791
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  727 VPKLPQQPDYPHPKPKT--------TRSPAASPTELVPTPV-------------FEPVTPL-----------KEDPVTTI 774
Cdd:PHA03247  2792 SESRESLPSPWDPADPPaavlapaaALPPAASPAGPLPPPTsaqptapppppgpPPPSLPLggsvapggdvrRRPPSRSP 2871
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  775 ASKISQRTHRPRPRPRPRPRPRPRPKATLSPQAPETKTVPAVVLEPVTLRPEVQVTTLAPQKTQKKHRPSPKPKPVPSPE 854
Cdd:PHA03247  2872 AAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAG 2951
                          410       420       430       440
                   ....*....|....*....|....*....|....*....|....*..
gi 1907118306  855 VTESKPVLPRVREPVTLRTETWVT------------TKAPKTPKRTR 889
Cdd:PHA03247  2952 AGEPSGAVPQPWLGALVPGRVAVPrfrvpqpapsreAPASSTPPLTG 2998
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
509-778 7.10e-12

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 70.49  E-value: 7.10e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  509 TPKRQSTPKPPRV-----KPAPEPETRPSA--QTTKAPRKTKKPGHHRlrRPKTTRSPEVPKS--KPALEPATVTPEILV 579
Cdd:PTZ00449   542 EPKEGGKPGETKEgevgkKPGPAKEHKPSKipTLSKKPEFPKDPKHPK--DPEEPKKPKRPRSaqRPTRPKSPKLPELLD 619
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  580 PKIVPKPPQKPKATRRPevpqvkpahepvtfgseapalaivtttdiepvitrtkasvttlaPKPPRPRTHRQRTKYKTTQ 659
Cdd:PTZ00449   620 IPKSPKRPESPKSPKRP--------------------------------------------PPPQRPSSPERPEGPKIIK 655
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  660 SPKIPHSKPADLGPITSEPPLASTTKKVRRPRPKPQTTPHPEVPHTILVPATSLEPFIITEAPgTTLVPKLPQQPDYPHP 739
Cdd:PTZ00449   656 SPKPPKSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTP-RPLPPKLPRDEEFPFE 734
                          250       260       270
                   ....*....|....*....|....*....|....*....
gi 1907118306  740 KPKTTRSPAASPTELVPTPVfEPVTPLKEDPVTTIASKI 778
Cdd:PTZ00449   735 PIGDPDAEQPDDIEFFTPPE-EERTFFHETPADTPLPDI 772
PHA03247 PHA03247
large tegument protein UL36; Provisional
448-779 5.40e-11

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 68.04  E-value: 5.40e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  448 TATRDPILDSVPPKTSRTAEQPRATLAPIEALFESRNVEIFTSPEVRPTTAAPQQTTSIPSTPKRQSTPKPPRVKPAPEP 527
Cdd:PHA03247  2696 TSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAP 2775
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  528 ETRPSAQTTKAPRKTKKPGHHRLRRPKTTRSPEVPKSKP-ALEPATVTPEILVPkivpkPPQKPKATRRPEVPQVKPAHE 606
Cdd:PHA03247  2776 AAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPaAALPPAASPAGPLP-----PPTSAQPTAPPPPPGPPPPSL 2850
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  607 PvTFGSEAPALAIVTTTDiepviTRTKASVTTLAPKPPRPRTHRQRTKYKTTQSPKIPHSKPADLGPITSEPPLASTTKK 686
Cdd:PHA03247  2851 P-LGGSVAPGGDVRRRPP-----SRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPP 2924
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  687 VR-RPRPKPQTTPHPEVPhtilvPATSLEPFIITEAPGTTLVPKLPQQPDYPHPKPKtTRSPAASPTELVPTPVFEPVTP 765
Cdd:PHA03247  2925 PPpQPQPPPPPPPRPQPP-----LAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPR-FRVPQPAPSREAPASSTPPLTG 2998
                          330
                   ....*....|....
gi 1907118306  766 LKEDPVTTIASKIS 779
Cdd:PHA03247  2999 HSLSRVSSWASSLA 3012
PHA03247 PHA03247
large tegument protein UL36; Provisional
456-890 1.23e-10

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 66.89  E-value: 1.23e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  456 DSVPPKTSRTAEQPRATLAPIEALFESRNveifTSPEVRPTTAAPQQTTSIPSTPKRQSTPKPPRVKPAPEPETRPSaqt 535
Cdd:PHA03247  2558 AAPPAAPDRSVPPPRPAPRPSEPAVTSRA----RRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPS--- 2630
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  536 tKAPRKTKKPGHHRLRRPKttrsPEVPKSKPAlePATVTPEILVPKIvPKPPQKPKATRRPEVPQVKPAHEPVTFGSEAP 615
Cdd:PHA03247  2631 -PSPAANEPDPHPPPTVPP----PERPRDDPA--PGRVSRPRRARRL-GRAAQASSPPQRPRRRAARPTVGSLTSLADPP 2702
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  616 AlaivtttdiepvitrtkasvttlAPKPPRPRTHRQRTKYKTTQSPKIPH--SKPADLGPITSEPPLASTTKKVRRPRPK 693
Cdd:PHA03247  2703 P-----------------------PPPTPEPAPHALVSATPLPPGPAAARqaSPALPAAPAPPAVPAGPATPGGPARPAR 2759
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  694 PQTTPHPEVPHTILVPATSLEPfIITEAPGTTLVPKLPQQPD----YPHPKPKTTRSPAASPTELVPTPVFEPVTPLKED 769
Cdd:PHA03247  2760 PPTTAGPPAPAPPAAPAAGPPR-RLTRPAVASLSESRESLPSpwdpADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTA 2838
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  770 PVTT-------------IASKISQRTHRPRPRPRPRPRPRPRPKATLSPQAPETKTVPAVVLEPVTLRPEVQVTTLAPQK 836
Cdd:PHA03247  2839 PPPPpgppppslplggsVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQ 2918
                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1907118306  837 TQKKHRPSPKPKPVPSPEVTESKPVLPR-----VREPVTLRTETWVTTKAPKTPKRTRR 890
Cdd:PHA03247  2919 PQPQPPPPPQPQPPPPPPPRPQPPLAPTtdpagAGEPSGAVPQPWLGALVPGRVAVPRF 2977
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
1375-1466 2.90e-10

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 58.28  E-value: 2.90e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306 1375 NPPTNLTVVTVEgcPSFVILDWEKPLNDT--VTEYEVISRENGSFSGKNKSIQITNQTFSTVENLKPDTSYEFQVKPKNP 1452
Cdd:cd00063      2 SPPTNLRVTDVT--STSVTLSWTPPEDDGgpITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNG 79
                           90
                   ....*....|....
gi 1907118306 1453 LGEGPASNTVAFST 1466
Cdd:cd00063     80 GGESPPSESVTVTT 93
PHA03247 PHA03247
large tegument protein UL36; Provisional
545-1180 6.14e-10

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 64.57  E-value: 6.14e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  545 PGHHRLRRPKTTRSPEVPKSKPalEPATVTPEilvPKIVPKPPQKPKATRRPEVPQVKPAHEPV-TFGSEAPALAIVTTT 623
Cdd:PHA03247  2475 PGAPVYRRPAEARFPFAAGAAP--DPGGGGPP---DPDAPPAPSRLAPAILPDEPVGEPVHPRMlTWIRGLEELASDDAG 2549
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  624 DIEPvitrtkasvtTLAPKPPRPRTHRQrtkykttqspkIPHSKPAdlgPITSEPplaSTTKKVRRPRPKPQttphpevP 703
Cdd:PHA03247  2550 DPPP----------PLPPAAPPAAPDRS-----------VPPPRPA---PRPSEP---AVTSRARRPDAPPQ-------S 2595
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  704 HTILVPATSLEPFIITEAPGTtlvpkLPQQPDYPHPKPKTTRSPAASPTELVPTPVFEPVTPlKEDPVTTIASKISQRTH 783
Cdd:PHA03247  2596 ARPRAPVDDRGDPRGPAPPSP-----LPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERP-RDDPAPGRVSRPRRARR 2669
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  784 RPRPRPRPRPRPRPRPKATLSPQAPETKTV--PAVVLEPVTLRPEVQVTTLAPQKTQKKHRPSPKPKPVPSPEVTESKPV 861
Cdd:PHA03247  2670 LGRAAQASSPPQRPRRRAARPTVGSLTSLAdpPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPA 2749
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  862 LPRVREPVTLRTetwvTTKAPKTPKRTRRPRPKPQTTPTPETPLTKPVAATDLEPSALSTEVPATVVLATALTPVTLR-- 939
Cdd:PHA03247  2750 TPGGPARPARPP----TTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASpa 2825
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  940 TKAPKTTTLAPNVQRTRRPHPRPKTTASTGVSE----SKSAPTelQSLVLKPVTS--PSLEIIQSQSVSDDLELVAFSTE 1013
Cdd:PHA03247  2826 GPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPggdvRRRPPS--RSPAAKPAAParPPVRRLARPAVSRSTESFALPPD 2903
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306 1014 SPQKtiaPRQTTSMPPKLKTPHSRMPAKEPVPKEPlhttskPKMPPSPEVADTTSVPKDERLSLKPDPEVTHSETVLPPV 1093
Cdd:PHA03247  2904 QPER---PPQPQAPPPPQPQPQPPPPPQPQPPPPP------PPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAV 2974
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306 1094 T-FRVEPPKTTIAPLETRGIPLIPVISPRPSQEELQTAM-EETDQSTQELFTT-KIPRTTELAKTTQA----PHRLHTAP 1166
Cdd:PHA03247  2975 PrFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLALhEETDPPPVSLKQTlWPPDDTEDSDADSLfdsdSERSDLEA 3054
                          650
                   ....*....|....
gi 1907118306 1167 VRPrIPGRPHGRPA 1180
Cdd:PHA03247  3055 LDP-LPPEPHDPFA 3067
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
511-928 3.02e-09

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 62.01  E-value: 3.02e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  511 KRQSTPKPPRVKPAPE--PETRPSAQTTKAPRK-TKKPGHHRlrRPKTTRSPEVPKsKPAlePATVTPEILVPKIVPKP- 586
Cdd:PTZ00449   506 KHDEPPEGPEASGLPPkaPGDKEGEEGEHEDSKeSDEPKEGG--KPGETKEGEVGK-KPG--PAKEHKPSKIPTLSKKPe 580
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  587 -PQKPKATRRPEVPQVKPAHEPVTFGSEAPALAIVTTTDIEPVITRTKASVTTLAPKPP-RPRTHRQRTKYKTTQSPKIP 664
Cdd:PTZ00449   581 fPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPqRPSSPERPEGPKIIKSPKPP 660
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  665 HSKPADLGPITSEPPLASTTKKVRRPRPKPQTTPHPEVPHTILVPATSLEPFIITEAPgTTLVPKLPQQPDYPHPKPKTT 744
Cdd:PTZ00449   661 KSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTP-RPLPPKLPRDEEFPFEPIGDP 739
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  745 RSPAASPTELVPTPVfEPVTPLKEDPVTTIASKISQRTHRPRPRPRPRPRPRPRPKATLSPQAPETK---TVPAVV---- 817
Cdd:PTZ00449   740 DAEQPDDIEFFTPPE-EERTFFHETPADTPLPDILAEEFKEEDIHAETGEPDEAMKRPDSPSEHEDKppgDHPSLPkkrh 818
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  818 ----LEPVTLRPEVQVTTLAPQKTQKKHRPSPKPKPVPSPEVTESKPVLPRVREPVTLR-------TETWVTTKAPKTPK 886
Cdd:PTZ00449   819 rldgLALSTTDLESDAGRIAKDASGKIVKLKRSKSFDDLTTVEEAEEMGAEARKIVVDDdgteaddEDTHPPEEKHKSEV 898
                          410       420       430       440
                   ....*....|....*....|....*....|....*....|..
gi 1907118306  887 RTRRPRPKPQTTPTPETPLTKPVAATDLEPSALSTEVPATVV 928
Cdd:PTZ00449   899 RRRRPPKKPSKPKKPSKPKKPKKPDSAFIPSIIAIFLVSLIV 940
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
1376-1456 8.76e-08

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 51.08  E-value: 8.76e-08
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  1376 PPTNLTVVTVEgcPSFVILDWEKPLNDTVTEYEV-ISRENGSFSGKNKSIQITNQTFS-TVENLKPDTSYEFQVKPKNPL 1453
Cdd:smart00060    3 PPSNLRVTDVT--STSVTLSWEPPPDDGITGYIVgYRVEYREEGSEWKEVNVTPSSTSyTLTGLKPGTEYEFRVRAVNGA 80

                    ...
gi 1907118306  1454 GEG 1456
Cdd:smart00060   81 GEG 83
fn3 pfam00041
Fibronectin type III domain;
1376-1459 1.16e-06

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 47.79  E-value: 1.16e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306 1376 PPTNLTVVTVEgcPSFVILDWEKP--LNDTVTEYEVISRENGSFSGKNkSIQITNQTFS-TVENLKPDTSYEFQVKPKNP 1452
Cdd:pfam00041    2 APSNLTVTDVT--STSLTVSWTPPpdGNGPITGYEVEYRPKNSGEPWN-EITVPGTTTSvTLTGLKPGTEYEVRVQAVNG 78

                   ....*..
gi 1907118306 1453 LGEGPAS 1459
Cdd:pfam00041   79 GGEGPPS 85
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
494-817 4.94e-06

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 51.61  E-value: 4.94e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  494 RPTTAAPQQTTSIPSTPKRQSTPKPPRVKPAPEpetrpSAQTTKAPRKTKKPGhhRLRRPKTTRSPEVPKSKPALEPATV 573
Cdd:PTZ00449   560 KPGPAKEHKPSKIPTLSKKPEFPKDPKHPKDPE-----EPKKPKRPRSAQRPT--RPKSPKLPELLDIPKSPKRPESPKS 632
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  574 tpeilvPKiVPKPPQKPKATRRPEVPQV----KPAHEP-VTFG-----------SEAPALAIVTTTDIEPVITRTKASVT 637
Cdd:PTZ00449   633 ------PK-RPPPPQRPSSPERPEGPKIikspKPPKSPkPPFDpkfkekfyddyLDAAAKSKETKTTVVLDESFESILKE 705
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  638 TLAPKPPRPRTHRQRTKYKTTQSPKIPHSKPADlgpitsePPLASTTKKVRRPRPKPQTTPHPEVPHTILVPATSLEPFI 717
Cdd:PTZ00449   706 TLPETPGTPFTTPRPLPPKLPRDEEFPFEPIGD-------PDAEQPDDIEFFTPPEEERTFFHETPADTPLPDILAEEFK 778
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  718 ITEAPGTTLVP----KLPQQPDYPHPKPKTT-----------------------------RSPAASPTELVPTPVFEPVT 764
Cdd:PTZ00449   779 EEDIHAETGEPdeamKRPDSPSEHEDKPPGDhpslpkkrhrldglalsttdlesdagriaKDASGKIVKLKRSKSFDDLT 858
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907118306  765 PLKEDPVT--------------------TIASKISQRTHRPRPRPRPRPRPRPRPKATLSPQAPETKTVPAVV 817
Cdd:PTZ00449   859 TVEEAEEMgaearkivvdddgteaddedTHPPEEKHKSEVRRRRPPKKPSKPKKPSKPKKPKKPDSAFIPSII 931
PHA03377 PHA03377
EBNA-3C; Provisional
517-703 5.69e-06

EBNA-3C; Provisional


Pssm-ID: 177614 [Multi-domain]  Cd Length: 1000  Bit Score: 51.21  E-value: 5.69e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  517 KPPRVKPAPEPETRPSAQT---TKAPRKTKKPGHHRLRRPKTTRSPEVPkskpaLEPATVTPEILVPKIVPKPPQKPKAT 593
Cdd:PHA03377   414 RKPRTLPWPTPKTHPVKRTlvkTSGRSDEAEQAQSTPERPGPSDQPSVP-----VEPAHLTPVEHTTVILHQPPQSPPTV 488
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  594 rrpevpQVKPAHEPVTFGSEApalAIVTTTDIEPVITRTKASVTTLAPKPPRPRTHRQRTKYKTTQSPK---IPHSKPAD 670
Cdd:PHA03377   489 ------AIKPAPPPSRRRRGA---CVVYDDDIIEVIDVETTEEEESVTQPAKPHRKVQDGFQRSGRRQKratPPKVSPSD 559
                          170       180       190
                   ....*....|....*....|....*....|...
gi 1907118306  671 LGPITSEPPLASTTKKVRRPRPKPQTTPHPEVP 703
Cdd:PHA03377   560 RGPPKASPPVMAPPSTGPRVMATPSTGPRDMAP 592
PHA03247 PHA03247
large tegument protein UL36; Provisional
954-1397 6.93e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.09  E-value: 6.93e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  954 RTRRPHPRPK-TTASTGVSESKSAPTELQSLVLKPVTSPSLEIIQSQSVSddlelvAFSTESPQKTIAPR----QTTSMP 1028
Cdd:PHA03247  2585 RARRPDAPPQsARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPA------ANEPDPHPPPTVPPperpRDDPAP 2658
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306 1029 PKLKTPH-SRMPAKEPVPKEPLHTTSKPKMPPSPEVADTTSVPKDERLSLKPDPEVTHSETVLPPVTF--RVEPPKTTIA 1105
Cdd:PHA03247  2659 GRVSRPRrARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAaaRQASPALPAA 2738
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306 1106 PLeTRGIPLIPVI--SPRPSQEELQTAMEETDQSTQELFTTKIPRTTELAKTTQAPHRlhTAPVRPRIPGrPHGRPALNK 1183
Cdd:PHA03247  2739 PA-PPAVPAGPATpgGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESR--ESLPSPWDPA-DPPAAVLAP 2814
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306 1184 TTTRPDKTKPRGTSHKNGvgTGTKQAPKPPSPGRNASVDSHATRKPGSvSGTRRPPiphrhSSTRPVSPERRPLPPNNVT 1263
Cdd:PHA03247  2815 AAALPPAASPAGPLPPPT--SAQPTAPPPPPGPPPPSLPLGGSVAPGG-DVRRRPP-----SRSPAAKPAAPARPPVRRL 2886
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306 1264 GKPGRAGIVSSSRVTSPPLKATLHPIGTATARPGAEQKEPTAPASEEEFGTTTDFSSSPTKETDPLGKPRFIGPHvryiP 1343
Cdd:PHA03247  2887 ARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQ----P 2962
                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1907118306 1344 KPENKPCSITDSVRRFPTEEATEGNATSPPQNPPTNLTVVTVEGCPSFVILDWE 1397
Cdd:PHA03247  2963 WLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLALHEE 3016
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
507-703 2.53e-05

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 411408 [Multi-domain]  Cd Length: 557  Bit Score: 49.00  E-value: 2.53e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  507 PSTPKRQSTPKPPrvkpAPEPETRPSAQTTKAPRKTKkpghhrLRRPKTTRSPEVPKSKPALEP------ATVTPEILVP 580
Cdd:NF033839   281 QDTPKEPGNKKPS----APKPGMQPSPQPEKKEVKPE------PETPKPEVKPQLEKPKPEVKPqpekpkPEVKPQLETP 350
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  581 KIVPKP-PQKPKATRRPEV----PQVKPahEPVTFGSEAPALAIVTTTDIEPVITRTKASVTTlAPKPPRPRTHRQRTKY 655
Cdd:NF033839   351 KPEVKPqPEKPKPEVKPQPekpkPEVKP--QPETPKPEVKPQPEKPKPEVKPQPEKPKPEVKP-QPEKPKPEVKPQPEKP 427
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1907118306  656 KTTQSPKI----PHSKPADLGPITSEPPLASTTKKVRRP---RPKPQTTPHPEVP 703
Cdd:NF033839   428 KPEVKPQPekpkPEVKPQPEKPKPEVKPQPETPKPEVKPqpeKPKPEVKPQPEKP 482
PHA03247 PHA03247
large tegument protein UL36; Provisional
1158-1378 3.98e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.78  E-value: 3.98e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306 1158 APHRLHTAPVRPRIPGRPHGRP---ALNKTTTRPDKTKPRGTSHKNGVGTGTKQAPKPPSPgrnASVDSHATRKPGSVSG 1234
Cdd:PHA03247  2556 PPAAPPAAPDRSVPPPRPAPRPsepAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSP---LPPDTHAPDPPPPSPS 2632
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306 1235 TRRPPIPHRHSSTRPVSPERRPLPPNNVTGKPGRAGIVSSSRVTSPPLKATLHPIGTATARPGAEQKEPTAPASEEEFGT 1314
Cdd:PHA03247  2633 PAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAP 2712
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907118306 1315 TTDFSSSPTKETDPLGKPRFIGPHVRYIPKPENKPCSITDSVRRFPTEEATEG-NATSPPQNPPT 1378
Cdd:PHA03247  2713 HALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGpPAPAPPAAPAA 2777
PHA03247 PHA03247
large tegument protein UL36; Provisional
690-1322 4.75e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.40  E-value: 4.75e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  690 PRPKPQTTPHPEVPHTILVPAtslePFIITEAPGTTLVPklPQQPDYPHPKPKTTRSPAASPTELVPtPVFEPVTPLKED 769
Cdd:PHA03247  2496 PDPGGGGPPDPDAPPAPSRLA----PAILPDEPVGEPVH--PRMLTWIRGLEELASDDAGDPPPPLP-PAAPPAAPDRSV 2568
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  770 PVTTIASKISQRTHRPRPRPRPRPRPRPRPKATLSPQAPETKTVPAVVLEPVTLRPEVQVTTLAPQKTQKkhrPSPKPKP 849
Cdd:PHA03247  2569 PPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEP---DPHPPPT 2645
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  850 VPSPEVTESKPVLPRVREPVTLR-----------TETWVTTKAPKT------------PKRTRRPRPKPQttptpetplt 906
Cdd:PHA03247  2646 VPPPERPRDDPAPGRVSRPRRARrlgraaqasspPQRPRRRAARPTvgsltsladpppPPPTPEPAPHAL---------- 2715
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  907 kpVAATDLEPSALStevpatvvlATALTPVTLRTKAPKTTTLAPNVQRTRRPHPRPKTTASTGVSESKSAP-TELQSLVL 985
Cdd:PHA03247  2716 --VSATPLPPGPAA---------ARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPaAGPPRRLT 2784
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  986 KPVTSPSLEIIQSQSVSDDLELVAFSTESPQKTIAPRQTTSMPpkLKTPHSRMPAKEPVPKEPLHTTSKP---------- 1055
Cdd:PHA03247  2785 RPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGP--LPPPTSAQPTAPPPPPGPPPPSLPLggsvapggdv 2862
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306 1056 -KMPPSPEVADTTSVPKDERLSLKPDPEVTHSETVLPPVTFRVEPPKTTIAPLEtrgiplipvisPRPSQEELQTAMEET 1134
Cdd:PHA03247  2863 rRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPP-----------PQPQPQPPPPPQPQP 2931
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306 1135 DQSTQELFTTKIPRTTELAKTTQAPHRLHTAPVRPRIPGRPhgrPALNKTTTRPDKTKPrgtshkngvgtgtkqAPKPPS 1214
Cdd:PHA03247  2932 PPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRV---AVPRFRVPQPAPSRE---------------APASST 2993
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306 1215 PGRNASVDSHATRKPGSVSgtrrppiPHRHSSTRPVSPERRPLPPNNVTGKPGRAGIVSSSRVTSpplKATLHPIGTATA 1294
Cdd:PHA03247  2994 PPLTGHSLSRVSSWASSLA-------LHEETDPPPVSLKQTLWPPDDTEDSDADSLFDSDSERSD---LEALDPLPPEPH 3063
                          650       660
                   ....*....|....*....|....*...
gi 1907118306 1295 RPGAEQKEPTAPASEEEFGTTTDFSSSP 1322
Cdd:PHA03247  3064 DPFAHEPDPATPEAGARESPSSQFGPPP 3091
fn3 pfam00041
Fibronectin type III domain;
116-195 1.81e-04

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 41.63  E-value: 1.81e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  116 KPLQLVVGTLTPSSVFLSWgflinphhdwTLPSHCPSD-RFYTIRYREKDKEKKWIFQLCPATET--IVENLKPNTVYEF 192
Cdd:pfam00041    2 APSNLTVTDVTSTSLTVSW----------TPPPDGNGPiTGYEVEYRPKNSGEPWNEITVPGTTTsvTLTGLKPGTEYEV 71

                   ...
gi 1907118306  193 GVK 195
Cdd:pfam00041   72 RVQ 74
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
553-777 2.39e-04

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 45.69  E-value: 2.39e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  553 PKTTRSPEVPKSKPalePATVTPEILVPKIVPKPPQKPKATRRPEVP-----QVKPAHEPVTFGSEAPALAIVTTTDIEP 627
Cdd:PLN03209   330 PKESDAADGPKPVP---TKPVTPEAPSPPIEEEPPQPKAVVPRPLSPytayeDLKPPTSPIPTPPSSSPASSKSVDAVAK 406
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  628 VITRTKASVTTLAPKPPRPRTHRQRTKyktTQSPKIPHSKPADLGPITSepplasttkkvrrPRPKPQTTPHPEVPHTIL 707
Cdd:PLN03209   407 PAEPDVVPSPGSASNVPEVEPAQVEAK---KTRPLSPYARYEDLKPPTS-------------PSPTAPTGVSPSVSSTSS 470
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907118306  708 VPATSLEP----FIITEAPGTTLVPKLPQQPDYPHPKPKTTRSPAASPTELVPTPVFEPVTPLKEDPVTTIASK 777
Cdd:PLN03209   471 VPAVPDTApataATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADE 544
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
114-195 2.52e-04

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 41.45  E-value: 2.52e-04
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306   114 PRKPLQLVVGTLTPSSVFLSWgflinphhdwtLPSHCPSDRFYTIRYREKDKEKKWIFQLCPA----TETIVENLKPNTV 189
Cdd:smart00060    1 PSPPSNLRVTDVTSTSVTLSW-----------EPPPDDGITGYIVGYRVEYREEGSEWKEVNVtpssTSYTLTGLKPGTE 69

                    ....*.
gi 1907118306   190 YEFGVK 195
Cdd:smart00060   70 YEFRVR 75
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
114-195 2.84e-04

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 41.33  E-value: 2.84e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  114 PRKPLQLVVGTLTPSSVFLSWgfliNPHHDWTLPSHcpsdrFYTIRYREKDKE--KKWIFQLCPATETIVENLKPNTVYE 191
Cdd:cd00063      1 PSPPTNLRVTDVTSTSVTLSW----TPPEDDGGPIT-----GYVVEYREKGSGdwKEVEVTPGSETSYTLTGLKPGTEYE 71

                   ....
gi 1907118306  192 FGVK 195
Cdd:cd00063     72 FRVR 75
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
515-626 4.91e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 44.80  E-value: 4.91e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  515 TPKPPRVKPAPEPETRPSAQTTKAPRKTKKPGHHRLRRPKttrsPEVPKSKPalePATVTPEILVPKIVPKPPQKPKATR 594
Cdd:PRK14950   361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPK----EPVRETAT---PPPVPPRPVAPPVPHTPESAPKLTR 433
                           90       100       110
                   ....*....|....*....|....*....|..
gi 1907118306  595 RPEVPQVKPAHEPVTFGSEAPALAIVTTTDIE 626
Cdd:PRK14950   434 AAIPVDEKPKYTPPAPPKEEEKALIADGDVLE 465
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
458-771 1.43e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 43.30  E-value: 1.43e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  458 VPPKTSRTAEQPRATLAP---IEALFESRNVEIFTSPEVRPTTAAPQQTTsIPSTPKRQSTPKP-------PRVKPAPEP 527
Cdd:PRK07003   372 VPARVAGAVPAPGARAAAavgASAVPAVTAVTGAAGAALAPKAAAAAAAT-RAEAPPAAPAPPAtadrgddAADGDAPVP 450
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  528 ---ETRPSAQTTKAPRKTKKPGHHRLRRPKTTRSPEVPKSKPALEPATVTPEILVPKIVPKPPQ--------KPKATRRP 596
Cdd:PRK07003   451 akaNARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAaasredapAAAAPPAP 530
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  597 EVPQVKPA--HEPVTFGSEAPALAIVTTTDIEPVITRTK--------ASVTTLAPKPPRPRTHRQrtkyktTQSPKIPHS 666
Cdd:PRK07003   531 EARPPTPAaaAPAARAGGAAAALDVLRNAGMRVSSDRGAraaaaakpAAAPAAAPKPAAPRVAVQ------VPTPRARAA 604
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  667 KPADLGPITSEPPLASTTkkvRRPRPkpqttPHPEVPHTILVPATSLEPFIiteAPGTTLVPKLPQQPDYPHPKPKTTRS 746
Cdd:PRK07003   605 TGDAPPNGAARAEQAAES---RGAPP-----PWEDIPPDDYVPLSADEGFG---GPDDGFVPVFDSGPDDVRVAPKPADA 673
                          330       340
                   ....*....|....*....|....*
gi 1907118306  747 PAAsPTELVPTPvfePVTPLkeDPV 771
Cdd:PRK07003   674 PAP-PVDTRPLP---PAIPL--DAI 692
PRK10263 PRK10263
DNA translocase FtsK; Provisional
420-747 1.48e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 43.54  E-value: 1.48e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  420 SRVVQPQTATYDVI---------SSSTTSDETEIEIHTATRDPILDSVPPKTSRTA-EQPRATLAPIEALFESRNVeIFT 489
Cdd:PRK10263   297 NRATQPEYDEYDPLlngapitepVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPpAQPTVAWQPVPGPQTGEPV-IAP 375
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  490 SPEVRPTTAAPQQTTSIPSTPKRQSTP--KPPRVKPAPEPETRPSAQTTKAPRKTKKPGHHRLRRPKTTRSPEVPKSKPA 567
Cdd:PRK10263   376 APEGYPQQSQYAQPAVQYNEPLQQPVQpqQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQST 455
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  568 LEP-ATVTPEILVPKIVPKPP---------QKPKATRRPEVPQVKPAHEPVTFGSEapalaivtttdIEPVITRTKASVT 637
Cdd:PRK10263   456 FAPqSTYQTEQTYQQPAAQEPlyqqpqpveQQPVVEPEPVVEETKPARPPLYYFEE-----------VEEKRAREREQLA 524
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  638 TLAPKPPRPrthrqrTKYKTTQSPKIPHSKPADLGPITSEPPLASTTKKVRrprpkpQTTPHPEVPHTILVPATSLepfi 717
Cdd:PRK10263   525 AWYQPIPEP------VKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVK------KATLATGAAATVAAPVFSL---- 588
                          330       340       350
                   ....*....|....*....|....*....|
gi 1907118306  718 iteAPGTTLVPKLPQQPDYPHPKPKTTRSP 747
Cdd:PRK10263   589 ---ANSGGPRPQVKEGIGPQLPRPKRIRVP 615
PHA03369 PHA03369
capsid maturational protease; Provisional
491-779 1.69e-03

capsid maturational protease; Provisional


Pssm-ID: 223061 [Multi-domain]  Cd Length: 663  Bit Score: 43.06  E-value: 1.69e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  491 PEVRPTTAAPQQTTSIPSTPKRQSTPKPPRVKPAPEPETRPSAQTTKAPRKTKKPGHHRLRRPKTTRSPEVPKSKPALEP 570
Cdd:PHA03369   362 AAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDPGLVSPYNPQSPGTSYGPEPVGPVPPQPT 441
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  571 ATVTPEILVPKIVPKPPQKPKATRRPEVPQVKPAHEPVTFGSEAPalaivtTTDIEPVITRTKASVTTLAPKPPRPRTHR 650
Cdd:PHA03369   442 NPYVMPISMANMVYPGHPQEHGHERKRKRGGELKEELIETLKLVK------KLKEEQESLAKELEATAHKSEIKKIAESE 515
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  651 QRTKYKTTQSPKIPHSKPADLGPITSEPPLASTTKKVRRPRPKPQTTPHPEVPHTILVPATSLEPFIITEAPGT------ 724
Cdd:PHA03369   516 FKNAGAKTAAANIEPNCSADAAAPATKRARPETKTELEAVVRFPYQIRNMESPAFVHSFTSTTLAAAAGQGSDTaealag 595
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1907118306  725 ---TLVPKLPQQPDYPHpkpktTRSPAASPTELVPTPVFEPVTPLKEDPVTTIASKIS 779
Cdd:PHA03369   596 aieTLLTQASAQPAGLS-----LPAPAVPVNASTPASTPPPLAPQEPPQPGTSAPSLE 648
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
490-618 1.77e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 42.93  E-value: 1.77e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  490 SPEVRPTTAAPQQTTSIPSTPKRQSTPKPPRVKPAPEPETRPSAQTTKAPRKTKKPGHHRLRRPKTTRSPEV-PKSKPAL 568
Cdd:PRK07994   370 VPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSePAAASRA 449
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1907118306  569 EPATVTPEIL-----VPKIVPKPPQKPKATR-RPEVPQVKPAHEPVTFGSEAPALA 618
Cdd:PRK07994   450 RPVNSALERLasvrpAPSALEKAPAKKEAYRwKATNPVEVKKEPVATPKALKKALE 505
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
1015-1266 1.85e-03

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 43.14  E-value: 1.85e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306 1015 PQKTIAPRQTTSMPPKLKTPhsRMPAKEPVPKEPLhTTSKPKMPPSPEVADTTSVPKDERLSLKPDPEVTHSETVLPPVT 1094
Cdd:PTZ00449   569 PSKIPTLSKKPEFPKDPKHP--KDPEEPKKPKRPR-SAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSP 645
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306 1095 FRVEPPKT--TIAPLETRGIPLIPVISPRPSQEELQTAMEETDQST----QELFTTKIPRTTELAKTTQAPHRLHTAPVR 1168
Cdd:PTZ00449   646 ERPEGPKIikSPKPPKSPKPPFDPKFKEKFYDDYLDAAAKSKETKTtvvlDESFESILKETLPETPGTPFTTPRPLPPKL 725
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306 1169 PRIPGRPHGRPAlnktttRPDKTKPRGTSHKNGVGTGTKQAPKPPSPGRNASVDSHATRKPGSVSGTRRPPIPHRhsstR 1248
Cdd:PTZ00449   726 PRDEEFPFEPIG------DPDAEQPDDIEFFTPPEEERTFFHETPADTPLPDILAEEFKEEDIHAETGEPDEAMK----R 795
                          250
                   ....*....|....*....
gi 1907118306 1249 PVSP-ERRPLPPNNVTGKP 1266
Cdd:PTZ00449   796 PDSPsEHEDKPPGDHPSLP 814
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
480-628 2.09e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 42.49  E-value: 2.09e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  480 FESRNVEIFTSPEVRPTTAAPQQTTSIPSTPKRQSTPKPPRVKPAPEPETRPSAQTTKAPRKTKKPghhrLRRPKTTRSP 559
Cdd:PRK14950   351 LELAVIEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRP----VAPPVPHTPE 426
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907118306  560 EVPKSKPALEPATVTPEILVPkivPKPPQKPKATRRPEV--PQVKPAHEPVT--FGSEAPALAIVTTTDIEPV 628
Cdd:PRK14950   427 SAPKLTRAAIPVDEKPKYTPP---APPKEEEKALIADGDvlEQLEAIWKQILrdVPPRSPAVQALLSSGVRPV 496
dnaA PRK14086
chromosomal replication initiator protein DnaA;
515-718 2.44e-03

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 42.51  E-value: 2.44e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  515 TPKPPRVKPAPEPETRPSAQTTKAPRKTKKP----GHHRL--RRPKTTRSPEVPKSKPALEPATVTPE--ILVPKIVPKP 586
Cdd:PRK14086    87 TVDPSAGEPAPPPPHARRTSEPELPRPGRRPyegyGGPRAddRPPGLPRQDQLPTARPAYPAYQQRPEpgAWPRAADDYG 166
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  587 PQKPKATRRPEVPQVKPAHEPVTFGSEAPALAivtttDIEPVITRTKASVTTLAPKPPRPRTHRQRTKYKTTQSPKIPHS 666
Cdd:PRK14086   167 WQQQRLGFPPRAPYASPASYAPEQERDREPYD-----AGRPEYDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRG 241
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1907118306  667 KPADLGPItSEPPLASTTKKVRRPRPKPQTTPHPEVPHTILVPATSLEPFII 718
Cdd:PRK14086   242 GPGPPERD-DAPVVPIRPSAPGPLAAQPAPAPGPGEPTARLNPKYTFDTFVI 292
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
469-600 3.32e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.28  E-value: 3.32e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  469 PRATLAPIEALfESRNVEIFTSPEVRPT----TAAPQQTTSIPSTPKRQSTPKPPRVkPAPEPETRPSAQTTKAPRKTKK 544
Cdd:PRK07764   371 ERGLLARLERL-ERRLGVAGGAGAPAAAapsaAAAAPAAAPAPAAAAPAAAAAPAPA-AAPQPAPAPAPAPAPPSPAGNA 448
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1907118306  545 PGHHRLRRPKTTRSPEVPKSKPALEPATVTPEILVPKIVPKPPQKPKATRRPEVPQ 600
Cdd:PRK07764   449 PAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPA 504
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
515-612 4.19e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 41.85  E-value: 4.19e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  515 TPKPPRVKPAPEPETrPSAQTTKAPRKTKKPGhhrlRRPKTTRSPEvpkSKPAlePATVTPeilVPKIVPKPPqKPKATR 594
Cdd:PRK14954   385 AGSPDVKKKAPEPDL-PQPDRHPGPAKPEAPG----ARPAELPSPA---SAPT--PEQQPP---VARSAPLPP-SPQASA 450
                           90
                   ....*....|....*...
gi 1907118306  595 RPEVPQVKPAhepVTFGS 612
Cdd:PRK14954   451 PRNVASGKPG---VDLGS 465
PHA03247 PHA03247
large tegument protein UL36; Provisional
531-781 4.44e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.85  E-value: 4.44e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  531 PSAQTTKAPRKTKKPGHHRlrrpKTTRSPEVPKSKPALEPATVTPEILVPKIVPKPPQKPKATRRPEVPqvkPAHEPVTF 610
Cdd:PHA03247   255 PAPPPVVGEGADRAPETAR----GATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPPDPPPPA---PAGDAEEE 327
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  611 GSEAPALAIVTttdiePVitrtkasvttlapkpPRPRTHRQRTKYKTTQSPKIPHSKPADLGPITSEPPLASTTKKVRRp 690
Cdd:PHA03247   328 DDEDGAMEVVS-----PL---------------PRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRKRR- 386
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  691 rpkpqTTPHPEVPHTiLVPATSLEPFIITEAPGTTLVPKLPQQPDYPHPKPKTTRSPAASPTELVPTPVFEPVTPLKEDP 770
Cdd:PHA03247   387 -----SARHAATPFA-RGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATE 460
                          250
                   ....*....|.
gi 1907118306  771 VTTIASKISQR 781
Cdd:PHA03247   461 PAPDDPDDATR 471
PRK10263 PRK10263
DNA translocase FtsK; Provisional
669-836 4.49e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 41.99  E-value: 4.49e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  669 ADLGPITSEPPLASTTKKVRRPRPKPQTTPHPEVPHTILVPATSLEPFIITEAPGTTLVPKLPQQPDYPHPKPKTTRSPA 748
Cdd:PRK10263   335 APVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQ 414
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  749 ASPTELVPTPVFEPVTPLKEDPVTTIASKISQRTHRPRPRPRPRPRPRPRPKATLSPQAPETKTV-PAVVLEPVTLRPEV 827
Cdd:PRK10263   415 PAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQqPQPVEQQPVVEPEP 494

                   ....*....
gi 1907118306  828 QVTTLAPQK 836
Cdd:PRK10263   495 VVEETKPAR 503
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
491-673 5.01e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.40  E-value: 5.01e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  491 PEVRPTTAAPQQTTSIPSTPKRQSTPKPPRVKPAPEPETRPSAQTTKAPRKTKKPGHHRLRRPKTTRSPEVPKSKPALEP 570
Cdd:PRK12323   383 AQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAA 462
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  571 ATVTPEIL---VPKIVPKPPQKPKATRRPEVPQVKPAHE-PVTFGSEAPA------LAIVTTTDIEPVITRTKASVTTLA 640
Cdd:PRK12323   463 RPAAAGPRpvaAAAAAAPARAAPAAAPAPADDDPPPWEElPPEFASPAPAqpdaapAGWVAESIPDPATADPDDAFETLA 542
                          170       180       190
                   ....*....|....*....|....*....|...
gi 1907118306  641 PKPPRPRTHRQRTKYKTTQSPKIPHSKPADLGP 673
Cdd:PRK12323   543 PAPAAAPAPRAAAATEPVVAPRPPRASASGLPD 575
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
868-1158 6.76e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 436069 [Multi-domain]  Cd Length: 480  Bit Score: 41.06  E-value: 6.76e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  868 PVTLRTETWVTT------KAPKTPKRTRRPRPKPQTTPTPETPLTKPVAATDLEPSALSTEVPATVVLATALTPVTLRTK 941
Cdd:pfam17823   65 PVTLTKGTSAAHlnstevKAEHTPHGTDLSEPATREGAADGAASRALAAAASSSPSSAAQSAPTTIAGLPSLASSAPMAA 144
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306  942 APKTTTLApnvqrtrrphpRPKTTASTGVSESKSAPTELQSL---VLKPVTSPSLEIIQSQSVSDDLELVAFSTESP-QK 1017
Cdd:pfam17823  145 APRTNAAS-----------NAPTAAASSTAAASGAPTTAASSapaTLTPASGISTAATATGHPAAGTALAAVGNSSPaAG 213
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306 1018 TIAPRQTTSMPPKLKT-------------------PHSRMPAkePVPKEPLHTTSKPKMPPS-PEVADTTS-VPKDERL- 1075
Cdd:pfam17823  214 TVTAAVGTVTPAALATlaaaagtvasaagtintgdPHARRLS--PAKHMPSDTSARNPAAPSgAQAQGLIIqVSTDQPVh 291
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118306 1076 SLKPDPEVTHSETVLPPVTFRV-----------------EPPKTTIAPLETRGIPLI----PVISPRPSQEELQTAMEET 1134
Cdd:pfam17823  292 NTAGEPTPSPSNTTLEPNTPKSvastnlavvtttkaqakEPSASPVPVLHTSMIPEVeatsPTTQPSPLLPTQGAAGPGI 371
                          330       340
                   ....*....|....*....|....
gi 1907118306 1135 DQSTQELFTTKIPRTTELAKTTQA 1158
Cdd:pfam17823  372 LLAPDQVATDATAGTASAGPTPRS 395
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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