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Conserved domains on  [gi|1907137607|ref|XP_036016380|]
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TNF receptor-associated factor 1 isoform X3 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TRAF_BIRC3_bd super family cl25034
TNF receptor-associated factor BIRC3 binding domain; This domain is found in TNF ...
 175-229 6.94e-11

TNF receptor-associated factor BIRC3 binding domain; This domain is found in TNF receptor-associated factor 1 and 2 (TRAF1 and TRAF2), where it binds to Baculoviral IAP repeat-containing protein 3 (BIRC3) (cIAP2).


The actual alignment was detected with superfamily member pfam16673:

Pssm-ID: 465226  Cd Length: 64  Bit Score: 56.26  E-value: 6.94e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1907137607 175 VKEKLLAQLEEKLRVFANIVAVLNKEVEASHLALAASIHQSQLDREHILSLEQRL 229
Cdd:pfam16673   1 ELEQKCQALENKVATFENIVAVLNREVERCSTTIEAYERQRRLDQDKIESLENKI 55
 
Name Accession Description Interval E-value
TRAF_BIRC3_bd pfam16673
TNF receptor-associated factor BIRC3 binding domain; This domain is found in TNF ...
 175-229 6.94e-11

TNF receptor-associated factor BIRC3 binding domain; This domain is found in TNF receptor-associated factor 1 and 2 (TRAF1 and TRAF2), where it binds to Baculoviral IAP repeat-containing protein 3 (BIRC3) (cIAP2).


Pssm-ID: 465226  Cd Length: 64  Bit Score: 56.26  E-value: 6.94e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1907137607 175 VKEKLLAQLEEKLRVFANIVAVLNKEVEASHLALAASIHQSQLDREHILSLEQRL 229
Cdd:pfam16673   1 ELEQKCQALENKVATFENIVAVLNREVERCSTTIEAYERQRRLDQDKIESLENKI 55
 
Name Accession Description Interval E-value
TRAF_BIRC3_bd pfam16673
TNF receptor-associated factor BIRC3 binding domain; This domain is found in TNF ...
 175-229 6.94e-11

TNF receptor-associated factor BIRC3 binding domain; This domain is found in TNF receptor-associated factor 1 and 2 (TRAF1 and TRAF2), where it binds to Baculoviral IAP repeat-containing protein 3 (BIRC3) (cIAP2).


Pssm-ID: 465226  Cd Length: 64  Bit Score: 56.26  E-value: 6.94e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1907137607 175 VKEKLLAQLEEKLRVFANIVAVLNKEVEASHLALAASIHQSQLDREHILSLEQRL 229
Cdd:pfam16673   1 ELEQKCQALENKVATFENIVAVLNREVERCSTTIEAYERQRRLDQDKIESLENKI 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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