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Conserved domains on  [gi|1907143794|ref|XP_036018557|]
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lysosome-associated membrane glycoprotein 5 isoform X1 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Lamp super family cl26995
Lysosome-associated membrane glycoprotein (Lamp);
43-213 7.41e-09

Lysosome-associated membrane glycoprotein (Lamp);


The actual alignment was detected with superfamily member pfam01299:

Pssm-ID: 396046  Cd Length: 148  Bit Score: 53.34  E-value: 7.41e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907143794  43 PEKDIFVVRENGTTCLMAEFAAKFIVPYDVwASNyvdliTEQAEIS-----LTRgaeVKGHCGHNESELEvfWVDHAYTL 117
Cdd:pfam01299   1 PTVGNYSVTNGNGTCLLATMGLQLNVTYKT-KDN-----KTVQRVFninpnVTK---ASGSCGNQSATLL--LNFPNGTL 69
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907143794 118 RMLFVKEshNTSKgpeaTWNLNKVHFVYDSSEkthfkAPVKVnkYIASSHHLSALVTPAGMSYECQAQQTISLASSdpqk 197
Cdd:pfam01299  70 TFTFALN--NSEN----KFYLSEVNVSLTLPD-----AKGPT--FSASNSSLRELQAPLGSSYMCNKEQSIQVSPA---- 132
                         170
                  ....*....|....*.
gi 1907143794 198 tVTMILSAVHIQPFDI 213
Cdd:pfam01299 133 -LSLNTFNLQVQAFQV 147
 
Name Accession Description Interval E-value
Lamp pfam01299
Lysosome-associated membrane glycoprotein (Lamp);
43-213 7.41e-09

Lysosome-associated membrane glycoprotein (Lamp);


Pssm-ID: 396046  Cd Length: 148  Bit Score: 53.34  E-value: 7.41e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907143794  43 PEKDIFVVRENGTTCLMAEFAAKFIVPYDVwASNyvdliTEQAEIS-----LTRgaeVKGHCGHNESELEvfWVDHAYTL 117
Cdd:pfam01299   1 PTVGNYSVTNGNGTCLLATMGLQLNVTYKT-KDN-----KTVQRVFninpnVTK---ASGSCGNQSATLL--LNFPNGTL 69
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907143794 118 RMLFVKEshNTSKgpeaTWNLNKVHFVYDSSEkthfkAPVKVnkYIASSHHLSALVTPAGMSYECQAQQTISLASSdpqk 197
Cdd:pfam01299  70 TFTFALN--NSEN----KFYLSEVNVSLTLPD-----AKGPT--FSASNSSLRELQAPLGSSYMCNKEQSIQVSPA---- 132
                         170
                  ....*....|....*.
gi 1907143794 198 tVTMILSAVHIQPFDI 213
Cdd:pfam01299 133 -LSLNTFNLQVQAFQV 147
 
Name Accession Description Interval E-value
Lamp pfam01299
Lysosome-associated membrane glycoprotein (Lamp);
43-213 7.41e-09

Lysosome-associated membrane glycoprotein (Lamp);


Pssm-ID: 396046  Cd Length: 148  Bit Score: 53.34  E-value: 7.41e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907143794  43 PEKDIFVVRENGTTCLMAEFAAKFIVPYDVwASNyvdliTEQAEIS-----LTRgaeVKGHCGHNESELEvfWVDHAYTL 117
Cdd:pfam01299   1 PTVGNYSVTNGNGTCLLATMGLQLNVTYKT-KDN-----KTVQRVFninpnVTK---ASGSCGNQSATLL--LNFPNGTL 69
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907143794 118 RMLFVKEshNTSKgpeaTWNLNKVHFVYDSSEkthfkAPVKVnkYIASSHHLSALVTPAGMSYECQAQQTISLASSdpqk 197
Cdd:pfam01299  70 TFTFALN--NSEN----KFYLSEVNVSLTLPD-----AKGPT--FSASNSSLRELQAPLGSSYMCNKEQSIQVSPA---- 132
                         170
                  ....*....|....*.
gi 1907143794 198 tVTMILSAVHIQPFDI 213
Cdd:pfam01299 133 -LSLNTFNLQVQAFQV 147
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.19
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
  • Marchler-Bauer A et al. (2015), "CDD: NCBI's conserved domain database.", Nucleic Acids Res.43(D)222-6.
  • Marchler-Bauer A et al. (2011), "CDD: a Conserved Domain Database for the functional annotation of proteins.", Nucleic Acids Res.39(D)225-9.
  • Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.
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