|
Name |
Accession |
Description |
Interval |
E-value |
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
222-286 |
2.35e-35 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 127.90 E-value: 2.35e-35
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907163864 222 LGDRVLVGGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKV 286
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
82-146 |
5.23e-31 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 115.58 E-value: 5.23e-31
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907163864 82 VGERVWVNGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKL 146
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
222-286 |
1.92e-28 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 108.44 E-value: 1.92e-28
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907163864 222 LGDRVLVGGT-KTGVVRYVGETDFAKGEWCGVELDEPL-GKNDGAVAGTRYFQCPPKFGLFAPIHKV 286
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKV 67
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
82-147 |
1.47e-26 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 103.05 E-value: 1.47e-26
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907163864 82 VGERVWVNG-VKPGVVQYLGETQFAPGQWAGVVLDDPV-GKNDGAVGGVRYFECPALQGIFTRPSKLT 147
Cdd:smart01052 1 VGDRVEVGGgGRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
357-857 |
5.88e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 85.76 E-value: 5.88e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 357 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLVEnvrkEKVDLSNQL 436
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEE----RRRELEERL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 437 EEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEELSLR 516
Cdd:COG1196 319 EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 517 RGEIEELQHcllqsgpppadhpEAAETLRLRERLLSASKEHQRDSTLLQDKyehmLKTYQTEVDKLRAANEKYAQEVADL 596
Cdd:COG1196 399 AAQLEELEE-------------AEEALLERLERLEEELEELEEALAELEEE----EEEEEEALEEAAEEEAELEEEEEAL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 597 KAKVQQATTENMGLMDNWKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKALVEGIKMEHQLELGNLQAkhdLET 676
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAA---YEA 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 677 AMHGKEKEGLRQKLQEVQEELAGLQQHWREQLEEQASQHRLELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEFLKEQ 756
Cdd:COG1196 539 ALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVL 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 757 ISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAENRLQAAESlcSAQHSHVIESSDLSEETIRMKETVEGLQDKLNKR 836
Cdd:COG1196 619 GDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSL--TGGSRRELLAALLEAEAELEELAERLAEEELELE 696
|
490 500
....*....|....*....|.
gi 1907163864 837 DKEVTALTSQMDMLRAQSQLS 857
Cdd:COG1196 697 EALLAEEEEERELAEAEEERL 717
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
220-853 |
3.18e-16 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 83.20 E-value: 3.18e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 220 LHLGDRVLVGGTKtGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFapihkvIRIGFPSTSPAKA 299
Cdd:COG5244 4 LSVNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIF------IRPDDDSLLNGNA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 300 KKTKRmamgvsalthspssssissvssvassvggrpsRSGLLTETSSryarkISGTTALQEALKEKQQHIEQLLAERDLE 379
Cdd:COG5244 77 AYEKI--------------------------------KGGLVCESKG-----MDKDGEIKQENHEDRIHFEESKIRRLEE 119
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 380 RAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLVENVRKEKVDLSNQLEEERRKVEDLQfrveeesitkgD 459
Cdd:COG5244 120 TIEALKSTEKEEIVELRRENEELDKINLSLRERISSEEPELNKDGSKLSYDELKEFVEESRVQVYDMV-----------E 188
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 460 LETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLttvaeksrvlqLEEELSLRRGEIEELQHCL--LQSgpppADH 537
Cdd:COG5244 189 LVSDISETLNRNGSIQRSSVRECERSNIHDVLFLVNGI-----------LDGVIDELNGELERLRRQLvsLMS----SHG 253
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 538 PEAAETLRLRERLLSASKEHQRDSTLLQDKYEHMLktyqteVDKLRAANEKYAQevADLKAKVQQAT----TENMGLMDN 613
Cdd:COG5244 254 IEVEENSRLKATLEKFQSLELKVNTLQEELYQNKL------LKKFYQIYEPFAQ--AALSSQLQYLAevieSENFGKLEN 325
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 614 wkSKLDSLASDHQKSLEDLKATLNsgPGAQQKEIGELKALVE--GIKMEHQLELGNlQAKHDLETAMHgkekegLRQKLQ 691
Cdd:COG5244 326 --IEIHIILKVLSSISYALHIYTI--KNTPDHLETTLQCFVNiaPISMWLSEFLQR-KFSSKQETAFS------ICQFLE 394
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 692 EVQEELAGLQQHwREQLEEQASQ-HRL-----ELQEAQDQCR-DAQLRAQELEGL-DVEYRGQAQAIEFLKEQISLAEKK 763
Cdd:COG5244 395 DNKDVTLILKIL-HPILETTVPKlLAFlrtnsNFNDNDTLCLiGSLYEIARIDKLiGKEEISKQDNRLFLYPSCDITLSS 473
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 764 MLDYeMLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSAQHSHVIESSDLSEETIRMKETVEGLQDKLNK-------- 835
Cdd:COG5244 474 ILTI-LFSDKLEVFFQGIESLLENITIFPEQPSQQTSDSENIKENSLLSDRLNEENIRLKEVLVQKENMLTEetkikiii 552
|
650
....*....|....*....
gi 1907163864 836 -RDKEVTALTSQMDMLRAQ 853
Cdd:COG5244 553 gRDLERKTLEENIKTLKVE 571
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
357-798 |
1.28e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.52 E-value: 1.28e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 357 ALQEALKEKQqhIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQheqyVAEAEEKLQRARLlvenvrkekvdlsnQL 436
Cdd:COG1196 217 ELKEELKELE--AELLLLKLRELEAELEELEAELEELEAELEELEAE----LAELEAELEELRL--------------EL 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 437 EEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEELSLR 516
Cdd:COG1196 277 EELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 517 RGEIEELQHCLLQsgpppaDHPEAAETLRLRERLLSASKEHQRDSTLLQDKYEHMLKTYQTEVDKLRAANEKYAQEVADL 596
Cdd:COG1196 357 EAELAEAEEALLE------AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEAL 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 597 KAKVQQATTEnmglmdnwKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKALVEGIKMEHQLELgNLQAKHDLET 676
Cdd:COG1196 431 AELEEEEEEE--------EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA-RLLLLLEAEA 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 677 AMHGKEKEGLRQKLQEVQEELAGL--QQHWREQLEEQASQHRLELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEFLK 754
Cdd:COG1196 502 DYEGFLEGVKAALLLAGLRGLAGAvaVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDK 581
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 1907163864 755 EQISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAENRLQAA 798
Cdd:COG1196 582 IRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGR 625
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
82-143 |
1.17e-14 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 78.19 E-value: 1.17e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907163864 82 VGERVWVNGVKpGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRP 143
Cdd:COG5244 6 VNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRP 66
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
356-850 |
1.19e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.36 E-value: 1.19e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 356 TALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQY---VAEAEEKLQRARLLVENVRKEKVDL 432
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELeeeLEELEEELEEAEEELEEAEAELAEA 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 433 SNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEE 512
Cdd:COG1196 364 EEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 513 LSLRRGEIEELQHcllqsgpppadhpEAAETLRLRERLLSASKEHQRDSTLLQDKYEHMLKTYQTEVDKLRAANEKYAQE 592
Cdd:COG1196 444 LEEAAEEEAELEE-------------EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGV 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 593 VADLKAKVQQATTENMGLMDNWKSKLDSLASDHQKSLEDLKATLNSGPGAQQkeIGELKALVEG---------IKMEHQL 663
Cdd:COG1196 511 KAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAA--IEYLKAAKAGratflpldkIRARAAL 588
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 664 ELGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAG--LQQHWREQLEEQASQHRLELQEAQDQCRDAQLRAQELEGLDV 741
Cdd:COG1196 589 AAALARGAIGAAVDLVASDLREADARYYVLGDTLLGrtLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRR 668
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 742 EYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSAQHSHVIESSDLSEETIR 821
Cdd:COG1196 669 ELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
|
490 500 510
....*....|....*....|....*....|.
gi 1907163864 822 MKETVEGLQDKLNKRD--KEVTALTSQMDML 850
Cdd:COG1196 749 EEEALEELPEPPDLEEleRELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
341-799 |
1.45e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.51 E-value: 1.45e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 341 LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQheqyVAEAEEKLQRARL 420
Cdd:COG1196 290 EYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEE----LEEAEAELAEAEE 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 421 LVENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTV 500
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 501 AEKSRVLQLEEELSLRRGEIEELQhcllqsgpppADHPEAAETLRLRERLLSASKEHQRDSTLLQDKYEHMLKT--YQTE 578
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELL----------EEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGvkAALL 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 579 VDKLRAANEKYAQEVADLKAKVQQATTENMGLMDNWKSKLDSLASDHQKSLEDLKAT------LNSGPGAQQKEIGELKA 652
Cdd:COG1196 516 LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGratflpLDKIRARAALAAALARG 595
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 653 LVEGIKMEHQLELGNLQAK------HDLETAMHGKEKEGLRQKLQEVQEELAGLQQHWREQLEEQASQHRLELQEAQDQC 726
Cdd:COG1196 596 AIGAAVDLVASDLREADARyyvlgdTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALL 675
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907163864 727 RDAQLRAQELEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAENRLQAAE 799
Cdd:COG1196 676 EAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
332-667 |
4.37e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.09 E-value: 4.37e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 332 GGRPSRSGLLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQ---HEQYV 408
Cdd:TIGR02168 663 GGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDlarLEAEV 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 409 AEAEEKLQRARLLVENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERL 488
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 489 LRELADNRLTTVAEKSRVLQLEEELSLRRGEIEELQHCLLQSGPPPADHPEAAetlrlrERLLSASKEHQRDSTLLQDKY 568
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEL------EALLNERASLEEALALLRSEL 896
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 569 EHM---LKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTENMGLmdnwkskLDSLASDHQKSLEDLKATLNSGPGAQQK 645
Cdd:TIGR02168 897 EELseeLRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNL-------QERLSEEYSLTLEEAEALENKIEDDEEE 969
|
330 340
....*....|....*....|..
gi 1907163864 646 EIGELKALVEGIKmehqlELGN 667
Cdd:TIGR02168 970 ARRRLKRLENKIK-----ELGP 986
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
362-849 |
8.81e-12 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 69.38 E-value: 8.81e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 362 LKEKQQHIEQLLAERDLE------RAEVAKATSHICEVEKEIALLKA--QHEQYVAEAEEKLQRARLLVENVRKEKVDLS 433
Cdd:pfam15921 262 LQQHQDRIEQLISEHEVEitglteKASSARSQANSIQSQLEIIQEQArnQNSMYMRQLSDLESTVSQLRSELREAKRMYE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 434 NQLEEERRKV-----EDLQFRVEEESITK--GDLETQTQLEHARIGELEQSLLLEKAQAERL-------------LRELA 493
Cdd:pfam15921 342 DKIEELEKQLvlansELTEARTERDQFSQesGNLDDQLQKLLADLHKREKELSLEKEQNKRLwdrdtgnsitidhLRREL 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 494 DNRLTTVAEKSRVL---------QLEEELSLRRGEIEELQHCLLQSGPPPADHP---EAAETLRLRERLLSASKEHQRD- 560
Cdd:pfam15921 422 DDRNMEVQRLEALLkamksecqgQMERQMAAIQGKNESLEKVSSLTAQLESTKEmlrKVVEELTAKKMTLESSERTVSDl 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 561 STLLQDKyEHMLKTYQTEVDKLRAANEKYAQEVADLKA---------------KVQQA-----------TTENM------ 608
Cdd:pfam15921 502 TASLQEK-ERAIEATNAEITKLRSRVDLKLQELQHLKNegdhlrnvqtecealKLQMAekdkvieilrqQIENMtqlvgq 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 609 -----GLMDNWKSKLDSLASDHQKSLEDLKATLNSgpgaQQKEIGELKALVEGIKMEhQLELGN-----LQAKHDL--ET 676
Cdd:pfam15921 581 hgrtaGAMQVEKAQLEKEINDRRLELQEFKILKDK----KDAKIRELEARVSDLELE-KVKLVNagserLRAVKDIkqER 655
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 677 AMHGKEKEGLRQKLQEVQEELAGLQQHWR---EQLEEQASQHRLELQEAQDQCRDAQLRAQELEGLD------------- 740
Cdd:pfam15921 656 DQLLNEVKTSRNELNSLSEDYEVLKRNFRnksEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDghamkvamgmqkq 735
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 741 -VEYRGQAQA----IEFLKEQISLA---------EKKMLDYEMLQRAEAQS---------RQEAERLREKLLVAENRLQA 797
Cdd:pfam15921 736 iTAKRGQIDAlqskIQFLEEAMTNAnkekhflkeEKNKLSQELSTVATEKNkmagelevlRSQERRLKEKVANMEVALDK 815
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 1907163864 798 AeSLCSAQHSHVIESSDlsEETIRMKetvegLQDKLNKRDKEVTALTSQMDM 849
Cdd:pfam15921 816 A-SLQFAECQDIIQRQE--QESVRLK-----LQHTLDVKELQGPGYTSNSSM 859
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
433-797 |
3.34e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.39 E-value: 3.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 433 SNQLEEERRKVEDLQFRVEEESITKGDLETQTQleharigELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEE 512
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELE-------ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEER 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 513 LSLRRGEIEELQHcllqsgpppadhpEAAETLRLRERLLSASKEHQRDSTLLQDKYEhmlkTYQTEVDKLRAANEKYAQE 592
Cdd:TIGR02168 749 IAQLSKELTELEA-------------EIEELEERLEEAEEELAEAEAEIEELEAQIE----QLKEELKALREALDELRAE 811
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 593 VADLKAKVQQATTENMGLMDNwkskldslASDHQKSLEDLkatlnsgpgaqQKEIGELKALVEgiKMEHQLE-LGNLQAK 671
Cdd:TIGR02168 812 LTLLNEEAANLRERLESLERR--------IAATERRLEDL-----------EEQIEELSEDIE--SLAAEIEeLEELIEE 870
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 672 HDLETAMHGKEKEGLRQKLQEVQEELAGLQQHWREqLEEQASQHRLELQEAQDQCRDAQLRAQELEgldveyrgqaQAIE 751
Cdd:TIGR02168 871 LESELEALLNERASLEEALALLRSELEELSEELRE-LESKRSELRRELEELREKLAQLELRLEGLE----------VRID 939
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1907163864 752 FLKEQisLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAENRLQA 797
Cdd:TIGR02168 940 NLQER--LSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
410-788 |
1.49e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.08 E-value: 1.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 410 EAEEKLQRARllvENVRKekvdLSNQLEEERRKVEDLQFRVEeesITKGDLETQTQLEHARIGELEQSLLLEKAQAERLL 489
Cdd:TIGR02168 176 ETERKLERTR---ENLDR----LEDILNELERQLKSLERQAE---KAERYKELKAELRELELALLVLRLEELREELEELQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 490 RELADNRLTTVAEKSRVLQLEEELSLRRGE-------IEELQHCLLQSGpppadhpEAAETLRLRERLLSASKEHQRDSt 562
Cdd:TIGR02168 246 EELKEAEEELEELTAELQELEEKLEELRLEvseleeeIEELQKELYALA-------NEISRLEQQKQILRERLANLERQ- 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 563 llqdkyehmLKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTEnmglmdnwkskLDSLASDHQKsLEDLKATLNSGPGA 642
Cdd:TIGR02168 318 ---------LEELEAQLEELESKLDELAEELAELEEKLEELKEE-----------LESLEAELEE-LEAELEELESRLEE 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 643 QQKEIGELKALVegIKMEHQLELgnlqakhdletamhgkekegLRQKLQEVQEELAGLQQHwREQLEEQASQHRLELQEA 722
Cdd:TIGR02168 377 LEEQLETLRSKV--AQLELQIAS--------------------LNNEIERLEARLERLEDR-RERLQQEIEELLKKLEEA 433
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907163864 723 QDQCRDAQL--RAQELEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMlQRAEAQSRQEA-ERLREKL 788
Cdd:TIGR02168 434 ELKELQAELeeLEEELEELQEELERLEEALEELREELEEAEQALDAAER-ELAQLQARLDSlERLQENL 501
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
461-800 |
4.96e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 4.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 461 ETQTQLEHAR---------IGELEQSLLLEKAQAERllreladnrlttvAEKSRVLqleeelslrRGEIEELQHCLLqsg 531
Cdd:TIGR02168 176 ETERKLERTRenldrlediLNELERQLKSLERQAEK-------------AERYKEL---------KAELRELELALL--- 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 532 pppadhpeAAETLRLRERLlSASKEHQRDSTLLQDKYEHMLKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTENMGLM 611
Cdd:TIGR02168 231 --------VLRLEELREEL-EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLE 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 612 DNWKSKLDSLASDHQ--KSLEDLKATLNSGPGAQQKEIGELKALVEGIKMEHQLELGNLQAKHDLETAMHGKEKEgLRQK 689
Cdd:TIGR02168 302 QQKQILRERLANLERqlEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE-LEEQ 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 690 LQEVQEELAglqqhwreQLEEQASQHRLELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEFLKEQISLAEKKMLdYEM 769
Cdd:TIGR02168 381 LETLRSKVA--------QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEE-LEE 451
|
330 340 350
....*....|....*....|....*....|.
gi 1907163864 770 LQRAEAQSRQEAERLREKLLVAENRLQAAES 800
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAER 482
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
343-839 |
7.84e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.85 E-value: 7.84e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 343 ETSSRY--ARKISGTTALQEALK--EKQQHIEQLLAERDLERAEVAKaTSHICEVEKEIALLKAQHEQYVAEAEEKlQRA 418
Cdd:PTZ00121 1215 EEARKAedAKKAEAVKKAEEAKKdaEEAKKAEEERNNEEIRKFEEAR-MAHFARRQAAIKAEEARKADELKKAEEK-KKA 1292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 419 RLLVENVRKEKVDLSNQLEEERRKVEDLQFRVEE------------ESITKGDlETQTQLEHARIGELEQSllLEKAQAE 486
Cdd:PTZ00121 1293 DEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEakkkadaakkkaEEAKKAA-EAAKAEAEAAADEAEAA--EEKAEAA 1369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 487 RLLRELADNRLTTVAEKSRVLQLEEELSLRRGEIEELQHCLLQSGPPPADHPEA---AETLRLRERLLSASKEhQRDSTL 563
Cdd:PTZ00121 1370 EKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAkkkAEEKKKADEAKKKAEE-AKKADE 1448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 564 LQDKYEHMLKTYQTEvdklRAANEKYAQEVADLKAKVQQATTENMGLMDNWKSKLDSL--ASDHQKSLEDLKATLNSGPG 641
Cdd:PTZ00121 1449 AKKKAEEAKKAEEAK----KKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAkkAAEAKKKADEAKKAEEAKKA 1524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 642 AQQKEIGELKALVEGIKMEHQLELGNLQAKHDLETAMHGKEKEglRQKLQEVQEELAGLQQHWREQLEEQASQHRLELQE 721
Cdd:PTZ00121 1525 DEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAE--EAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYE 1602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 722 AQDQCRDAQLRAQElegldvEYRGQAqaieflkEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKllVAENRLQAAESL 801
Cdd:PTZ00121 1603 EEKKMKAEEAKKAE------EAKIKA-------EELKKAEEEKKKVEQLKKKEAEEKKKAEELKKA--EEENKIKAAEEA 1667
|
490 500 510
....*....|....*....|....*....|....*...
gi 1907163864 802 CSAQhshviESSDLSEETIRMKETVEGLQDKLNKRDKE 839
Cdd:PTZ00121 1668 KKAE-----EDKKKAEEAKKAEEDEKKAAEALKKEAEE 1700
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
350-853 |
1.26e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.01 E-value: 1.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 350 RKISGTTALQEALKEKQQHIEQLLAE-----RDLERAEVAKATSHICEVEKEIALLKAQ---HEQYVAEAEEKLQRARLL 421
Cdd:TIGR02169 251 EELEKLTEEISELEKRLEEIEQLLEElnkkiKDLGEEEQLRVKEKIGELEAEIASLERSiaeKERELEDAEERLAKLEAE 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 422 VENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLL-----LEKAQAER--LLRELAD 494
Cdd:TIGR02169 331 IDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKdyrekLEKLKREIneLKRELDR 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 495 NRLTTVAEKSRVLQLEEELSLRRGEIEELQHCLLQSgpppADHPEAAET--LRLRERLLSASKEHQRDSTLLqDKYEHML 572
Cdd:TIGR02169 411 LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDK----ALEIKKQEWklEQLAADLSKYEQELYDLKEEY-DRVEKEL 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 573 KTYQTEVDKLRAANEKYAQEVADLKAKVQQATTENMGL-------------------------MDNWKSKLDSLASDHQK 627
Cdd:TIGR02169 486 SKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVhgtvaqlgsvgeryataievaagnrLNNVVVEDDAVAKEAIE 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 628 SLEDLKAT------LN-----SGPGAQQKEIGELKALVEGIKMEHQLE------LGNLQAKHDLETA-----------MH 679
Cdd:TIGR02169 566 LLKRRKAGratflpLNkmrdeRRDLSILSEDGVIGFAVDLVEFDPKYEpafkyvFGDTLVVEDIEAArrlmgkyrmvtLE 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 680 GK--EKEG-------------------------LRQKLQEVQEELAGLQQHwREQLEEQASQHRLELQEAQDQCRDAQLR 732
Cdd:TIGR02169 646 GElfEKSGamtggsraprggilfsrsepaelqrLRERLEGLKRELSSLQSE-LRRIENRLDELSQELSDASRKIGEIEKE 724
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 733 AQELEGldvEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSAQHShVIES 812
Cdd:TIGR02169 725 IEQLEQ---EEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEI-QAEL 800
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 1907163864 813 SDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQ 853
Cdd:TIGR02169 801 SKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQ 841
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
337-764 |
1.30e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.01 E-value: 1.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 337 RSGLLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQ 416
Cdd:TIGR02169 651 KSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQ 730
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 417 RARLLVEnvrkekvdlsnQLEEERRKVEDLQFRVEEESITKGDLEtqtqlehARIGELEQSLLLEKAQAERLLRELADNR 496
Cdd:TIGR02169 731 EEEKLKE-----------RLEELEEDLSSLEQEIENVKSELKELE-------ARIEELEEDLHKLEEALNDLEARLSHSR 792
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 497 LTTVAEKSRvlQLEEELSLRRGEIEELQHCLlqsgpppadhpeaaETLRLRERLLSASKEH-QRDSTLLQDKyehmLKTY 575
Cdd:TIGR02169 793 IPEIQAELS--KLEEEVSRIEARLREIEQKL--------------NRLTLEKEYLEKEIQElQEQRIDLKEQ----IKSI 852
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 576 QTEVDKLRAANEKYAQEVADLKAKVQQattenmglmdnwkskLDSLASDHQKSLEDLKATLnsgpGAQQKEIGELKALVE 655
Cdd:TIGR02169 853 EKEIENLNGKKEELEEELEELEAALRD---------------LESRLGDLKKERDELEAQL----RELERKIEELEAQIE 913
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 656 giKMEHQLELgnlqakhdletamhgkekegLRQKLQEVQEELAGLQQHWREQLEEqaSQHRLELQEAQDQCRDAQLRAQE 735
Cdd:TIGR02169 914 --KKRKRLSE--------------------LKAKLEALEEELSEIEDPKGEDEEI--PEEELSLEDVQAELQRVEEEIRA 969
|
410 420
....*....|....*....|....*....
gi 1907163864 736 LEglDVEYRGQAQAIEFLKEQISLAEKKM 764
Cdd:TIGR02169 970 LE--PVNMLAIQEYEEVLKRLDELKEKRA 996
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
358-853 |
1.42e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.00 E-value: 1.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 358 LQEALKEKQQHIEQLLAERDLERAEVAkatshicEVEKEIALLKAQHEqyvaEAEEKLQRARLLVENVRKEKVDLSNQLE 437
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELA-------ELEEKLEELKEELE----SLEAELEELEAELEELESRLEELEEQLE 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 438 EERRKVEDLqfRVEEESITKgdleTQTQLEhARIGELEQSLLLEKAQAERLLRELADNRLTTVaeksrvlqlEEELSLRR 517
Cdd:TIGR02168 383 TLRSKVAQL--ELQIASLNN----EIERLE-ARLERLEDRRERLQQEIEELLKKLEEAELKEL---------QAELEELE 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 518 GEIEELQHCLlqsgpppADHPEAAETLR-----LRERLLSASKEHQRDS---TLLQDKYEHmLKTYQTEVDKLRAANEKY 589
Cdd:TIGR02168 447 EELEELQEEL-------ERLEEALEELReeleeAEQALDAAERELAQLQarlDSLERLQEN-LEGFSEGVKALLKNQSGL 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 590 AQEV----------ADLKAKVQQATTENMG--LMDNWKSKLDSLASDHQKS--------LEDLKATLNSGPGAQ--QKEI 647
Cdd:TIGR02168 519 SGILgvlselisvdEGYEAAIEAALGGRLQavVVENLNAAKKAIAFLKQNElgrvtflpLDSIKGTEIQGNDREilKNIE 598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 648 GELKALVEGIKMEHQLE------LGNLQAKHDLETAMH--GKEKEGLR-----------------------QKLQEVQEE 696
Cdd:TIGR02168 599 GFLGVAKDLVKFDPKLRkalsylLGGVLVVDDLDNALElaKKLRPGYRivtldgdlvrpggvitggsaktnSSILERRRE 678
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 697 LAGLQQHwREQLEEQASQHRLELQEAQDQCRDAQlraQELEGLDVEYRGQAQAIEFLKEQISLAEKKMldyEMLQRAEAQ 776
Cdd:TIGR02168 679 IEELEEK-IEELEEKIAELEKALAELRKELEELE---EELEQLRKELEELSRQISALRKDLARLEAEV---EQLEERIAQ 751
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907163864 777 SRQEAERLREKLLVAENRLQaaeslcsaqhshviessDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQ 853
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLE-----------------EAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE 811
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
392-857 |
2.81e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 60.55 E-value: 2.81e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 392 EVEKEIALLKAQHEQYvAEAEEKLQRARLLVENVRKEKvdlsNQLEEERRKVEDLQfrveeesitkgdletQTQLEHARI 471
Cdd:COG4717 75 ELEEELKEAEEKEEEY-AELQEELEELEEELEELEAEL----EELREELEKLEKLL---------------QLLPLYQEL 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 472 GELEQSLLLEKAQAERLLRELAdnrlttvaeksRVLQLEEELSLRRGEIEELQhcllqsgpppadhpeaaETLRLRERLL 551
Cdd:COG4717 135 EALEAELAELPERLEELEERLE-----------ELRELEEELEELEAELAELQ-----------------EELEELLEQL 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 552 SASKEHQrdstllqdkyehmLKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTEnmglMDNWKSKLdsLASDHQKSLED 631
Cdd:COG4717 187 SLATEEE-------------LQDLAEELEELQQRLAELEEELEEAQEELEELEEE----LEQLENEL--EAAALEERLKE 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 632 LKATLNSGPG-----AQQKEIGELKALVEGIkmeHQLELGNLQakhdLETAMHGKEKEGLRQKLQEVQeELAGLQQHWRE 706
Cdd:COG4717 248 ARLLLLIAAAllallGLGGSLLSLILTIAGV---LFLVLGLLA----LLFLLLAREKASLGKEAEELQ-ALPALEELEEE 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 707 QLEEQASQHRLELQEAQDQCRDAQLRAQELEGLDVEYRGQAQ--AIEFLKEQIS--LAEKKMLDYEMLQRAEAQSrQEAE 782
Cdd:COG4717 320 ELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEelQLEELEQEIAalLAEAGVEDEEELRAALEQA-EEYQ 398
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907163864 783 RLREKLLVAENRLQAAESLCSAQHSHVIEsSDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQSQLS 857
Cdd:COG4717 399 ELKEELEELEEQLEELLGELEELLEALDE-EELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELA 472
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
357-834 |
4.12e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 4.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 357 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEE---KLQRARLL-----VENVRKE 428
Cdd:TIGR02168 369 ELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEllkKLEEAELKelqaeLEELEEE 448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 429 KVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEqSLLLEKAQAERLLRELADNRLTTVAEKSRVLQ 508
Cdd:TIGR02168 449 LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLE-RLQENLEGFSEGVKALLKNQSGLSGILGVLSE 527
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 509 L---EEEL----------------------------SLRRGEIEELQHCLLQSGPPPADHPEAAETLRLRERLLSASKEH 557
Cdd:TIGR02168 528 LisvDEGYeaaieaalggrlqavvvenlnaakkaiaFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDL 607
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 558 QRDSTLLQDKYEHMLKTYQTeVDKLRAANEKY-------------------------------------AQEVADLKAKV 600
Cdd:TIGR02168 608 VKFDPKLRKALSYLLGGVLV-VDDLDNALELAkklrpgyrivtldgdlvrpggvitggsaktnssilerRREIEELEEKI 686
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 601 QQATTENmglmDNWKSKLDSLASDHQkSLEDLKATLNSGPGAQQKEIGELKALVEGIKMEHQ----------LELGNLQA 670
Cdd:TIGR02168 687 EELEEKI----AELEKALAELRKELE-ELEEELEQLRKELEELSRQISALRKDLARLEAEVEqleeriaqlsKELTELEA 761
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 671 KHDLETAMHGKEKEGL------RQKLQEVQEELAGLQQHWREQLEEQASQHRLELQEAQDQCRDAQLRAQELEGLDVEYR 744
Cdd:TIGR02168 762 EIEELEERLEEAEEELaeaeaeIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 745 GQAQAIEFLKEQISLAEKKMLD------------------YEMLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSAQH 806
Cdd:TIGR02168 842 DLEEQIEELSEDIESLAAEIEEleelieeleseleallneRASLEEALALLRSELEELSEELRELESKRSELRRELEELR 921
|
570 580
....*....|....*....|....*...
gi 1907163864 807 SHViesSDLSEETIRMKETVEGLQDKLN 834
Cdd:TIGR02168 922 EKL---AQLELRLEGLEVRIDNLQERLS 946
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
349-840 |
4.20e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.54 E-value: 4.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 349 ARKISGTTALQEALK--EKQQHIEQLL--AERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLVEN 424
Cdd:PTZ00121 1295 AKKAEEKKKADEAKKkaEEAKKADEAKkkAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 425 VRKEKVDLSNQLEEERRKVEDLQFRVEEESiTKGDLETQTQLEHARIGELEQSlLLEKAQAERLLRELADNR----LTTV 500
Cdd:PTZ00121 1375 EAKKKADAAKKKAEEKKKADEAKKKAEEDK-KKADELKKAAAAKKKADEAKKK-AEEKKKADEAKKKAEEAKkadeAKKK 1452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 501 AEKSRVLQLEEELSLRRGEIEELQHcllqsgppPADHPEAAETLRLRERLLSASKEHQRDSTLLQDKYEHMLKTYQT-EV 579
Cdd:PTZ00121 1453 AEEAKKAEEAKKKAEEAKKADEAKK--------KAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAkKA 1524
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 580 DKLRAANEKYAQEVADLKAKVQQAttenmglmDNWKSKLDSLASDHQKSLEDLKATLNSGPGAQQKeiGELKALVEGIKM 659
Cdd:PTZ00121 1525 DEAKKAEEAKKADEAKKAEEKKKA--------DELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK--AEEAKKAEEARI 1594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 660 EHQLELGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLQQHWREQLEEQASQHRLELQEAQDQCRDAQL--RAQELE 737
Cdd:PTZ00121 1595 EEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEakKAEEDK 1674
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 738 GLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERLRE-----KLLVAENRLQAAESLCSAQHSHV--- 809
Cdd:PTZ00121 1675 KKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKaeeenKIKAEEAKKEAEEDKKKAEEAKKdee 1754
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 1907163864 810 ---------IESSDLSEETIRMKETV--EGLQDKLNKRDKEV 840
Cdd:PTZ00121 1755 ekkkiahlkKEEEKKAEEIRKEKEAVieEELDEEDEKRRMEV 1796
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
408-732 |
4.32e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.47 E-value: 4.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 408 VAEAEEKLQRARLLVENVRK----------EKVDLSNQLEEERRKVE---DLQFRVEEESIT-----KGDLETQTQLEHA 469
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEEnierldliidEKRQQLERLRREREKAEryqALLKEKREYEGYellkeKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 470 RIGELEQSLLLEKAQAERLLRELA--DNRLTTVAEKSRVLQLEEELSLRRgEIEELQHCLLQSGPPPADHPEAAETLRLR 547
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEKRLEeiEQLLEELNKKIKDLGEEEQLRVKE-KIGELEAEIASLERSIAEKERELEDAEER 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 548 ERLLsaskEHQRDSTLLQ-DKYEHMLKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTENmglmDNWKSKLDSLasdhQ 626
Cdd:TIGR02169 324 LAKL----EAEIDKLLAEiEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEF----AETRDELKDY----R 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 627 KSLEDLKATLNSGPGAQQKEIGELKALVEGIKmEHQLELGNLQAKH-DLETAMH--GKEKEGLRQKLQEVQEELAGLQQH 703
Cdd:TIGR02169 392 EKLEKLKREINELKRELDRLQEELQRLSEELA-DLNAAIAGIEAKInELEEEKEdkALEIKKQEWKLEQLAADLSKYEQE 470
|
330 340 350
....*....|....*....|....*....|....*
gi 1907163864 704 WR------EQLEEQASQHRLELQEAQDQCRDAQLR 732
Cdd:TIGR02169 471 LYdlkeeyDRVEKELSKLQRELAEAEAQARASEER 505
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
353-853 |
5.05e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.07 E-value: 5.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 353 SGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEE-KLQRARLLVENVRKEKVD 431
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEaELKELQAELEELEEELEE 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 432 LSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEqSLLLEKAQAERLLRELADNRLTTVAEKSRVLQL-- 509
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLE-RLQENLEGFSEGVKALLKNQSGLSGILGVLSELis 530
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 510 -EEEL----------------------------SLRRGEIEELQHCLLQSGPPPADHPEAAETLRLRERLLSASKEHQRD 560
Cdd:TIGR02168 531 vDEGYeaaieaalggrlqavvvenlnaakkaiaFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKF 610
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 561 STLLQDKYEHMLKTYQTeVDKLRAANEKY-------------------------------------AQEVADLKAKVQQA 603
Cdd:TIGR02168 611 DPKLRKALSYLLGGVLV-VDDLDNALELAkklrpgyrivtldgdlvrpggvitggsaktnssilerRREIEELEEKIEEL 689
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 604 TTENmglmDNWKSKLDSLASDHQkSLEDLKATLNSGPGAQQKEIGELKALVEGIKMEHQLeLGNLQAKHDLETAMHGKEK 683
Cdd:TIGR02168 690 EEKI----AELEKALAELRKELE-ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ-LEERIAQLSKELTELEAEI 763
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 684 EGLRQKLQEVQEELAGLQQHwREQLEEQASQHRLELQEAQDQCRDAQlraQELEGLDVEYRGQAQAIEFLKEQISLAEKk 763
Cdd:TIGR02168 764 EELEERLEEAEEELAEAEAE-IEELEAQIEQLKEELKALREALDELR---AELTLLNEEAANLRERLESLERRIAATER- 838
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 764 mldyeMLQRAEAQSRQEAERLrEKLLVAENRLQAAESLCSAQHSHVIESSDLSEETI-RMKETVEGLQDKLNKRDKEVTA 842
Cdd:TIGR02168 839 -----RLEDLEEQIEELSEDI-ESLAAEIEELEELIEELESELEALLNERASLEEALaLLRSELEELSEELRELESKRSE 912
|
570
....*....|.
gi 1907163864 843 LTSQMDMLRAQ 853
Cdd:TIGR02168 913 LRRELEELREK 923
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
358-801 |
2.24e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.13 E-value: 2.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 358 LQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEiallKAQHEQYVAEAEEKLQRARLLVENVRKEKVDLSNQLE 437
Cdd:PRK02224 284 LRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDR----DEELRDRLEECRVAAQAHNEEAESLREDADDLEERAE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 438 EERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQ---AERLLRELADNRLTTvaeKSRVLQLEEELS 514
Cdd:PRK02224 360 ELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDlgnAEDFLEELREERDEL---REREAELEATLR 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 515 LRRGEIEELQHcLLQSGPPP--------ADHPEAAETLR-----LRERLLSASKEHQRdstlLQDKYEHM--LKTYQTEV 579
Cdd:PRK02224 437 TARERVEEAEA-LLEAGKCPecgqpvegSPHVETIEEDRerveeLEAELEDLEEEVEE----VEERLERAedLVEAEDRI 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 580 DKLRAANEKYAQEVADLKAKVQQATTENMGLMDNwKSKLDSLASDHQKSLEDLKatlnsgpGAQQKEIGELKALvEGIKM 659
Cdd:PRK02224 512 ERLEERREDLEELIAERRETIEEKRERAEELRER-AAELEAEAEEKREAAAEAE-------EEAEEAREEVAEL-NSKLA 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 660 EHQLELGNLQAKHDLETAMHGKEKEglRQKLQEVQEELAGLQQHWREQLEEQASQHRlELQEAQDQCRDAQLRAQelegl 739
Cdd:PRK02224 583 ELKERIESLERIRTLLAAIADAEDE--IERLREKREALAELNDERRERLAEKRERKR-ELEAEFDEARIEEARED----- 654
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 740 dveyrgQAQAIEFLKEqisLAEKkmLDYEMLQRAEAQSR--------QEAERLREKLLVAENRLQAAESL 801
Cdd:PRK02224 655 ------KERAEEYLEQ---VEEK--LDELREERDDLQAEigavenelEELEELRERREALENRVEALEAL 713
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
360-855 |
2.67e-08 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 57.93 E-value: 2.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 360 EALKEKQQHIEQLLAERDLERAEVAKATshICEVEKEIALLKAQHEQYVAEAEEKLQR-ARLLVENVRKEKVDLSNQLEE 438
Cdd:pfam12128 364 KALTGKHQDVTAKYNRRRSKIKEQNNRD--IAGIKDKLAKIREARDRQLAVAEDDLQAlESELREQLEAGKLEFNEEEYR 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 439 ERRKVEDLQFRVEEESITKGDLETQTQ----LEHARiGELEQSllleKAQAERLLRELADNRlTTVAEKSRVLQLEEE-L 513
Cdd:pfam12128 442 LKSRLGELKLRLNQATATPELLLQLENfderIERAR-EEQEAA----NAEVERLQSELRQAR-KRRDQASEALRQASRrL 515
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 514 SLRRGEIEELQHCLLqsgPPPAD-----HPEAAETLRLRERLLSASKEHQRD--STLLQDKYEHMLKTYQTEVDKLRAAN 586
Cdd:pfam12128 516 EERQSALDELELQLF---PQAGTllhflRKEAPDWEQSIGKVISPELLHRTDldPEVWDGSVGGELNLYGVKLDLKRIDV 592
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 587 EKYAQEVADLKAKVQQAttenmglmdnwKSKLDSlASDHQKSLEDLKATLNSGPGAQQKEIGELKALVEGIKMEHQ---L 663
Cdd:pfam12128 593 PEWAASEEELRERLDKA-----------EEALQS-AREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRrlfD 660
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 664 ELGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLQQHWREQLEEQASQHRLELQEAQ---DQCRDAQLrAQELEGLD 740
Cdd:pfam12128 661 EKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWqvvEGALDAQL-ALLKAAIA 739
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 741 VEYRGQAQAIEFLKEQI--SLAeKKMLDYEMLQRAEAQSRQEAERLREkllVAENRLQAAESLCSAQHSHVIESSDLSEE 818
Cdd:pfam12128 740 ARRSGAKAELKALETWYkrDLA-SLGVDPDVIAKLKREIRTLERKIER---IAVRRQEVLRYFDWYQETWLQRRPRLATQ 815
|
490 500 510
....*....|....*....|....*....|....*..
gi 1907163864 819 TIRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQSQ 855
Cdd:pfam12128 816 LSNIERAISELQQQLARLIADTKLRRAKLEMERKASE 852
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
350-695 |
2.97e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.84 E-value: 2.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 350 RKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEialLKAQHEQYVAEAEEKLQRARLL-VENVRKE 428
Cdd:PTZ00121 1558 KKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEE---KKMKAEEAKKAEEAKIKAEELKkAEEEKKK 1634
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 429 KVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLT------TVAE 502
Cdd:PTZ00121 1635 VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAeelkkkEAEE 1714
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 503 KSRVLQLEEELSLRRGEIEELQHcllqsgpPPADHPEAAETLRLRE----RLLSASKEHQRDSTLLQDKYEHMLKTYQTE 578
Cdd:PTZ00121 1715 KKKAEELKKAEEENKIKAEEAKK-------EAEEDKKKAEEAKKDEeekkKIAHLKKEEEKKAEEIRKEKEAVIEEELDE 1787
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 579 VD-KLRAANEKYAQEVADLKAKVQQATTENMGLMDNWKSKLDSlasdhqkSLEDLKATLNSgpgaQQKEIGELKalvegi 657
Cdd:PTZ00121 1788 EDeKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDS-------AIKEVADSKNM----QLEEADAFE------ 1850
|
330 340 350
....*....|....*....|....*....|....*...
gi 1907163864 658 kmEHQLELGNLQAKHDLETAMHGKEKEGLRQKLQEVQE 695
Cdd:PTZ00121 1851 --KHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEE 1886
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
359-847 |
9.74e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.08 E-value: 9.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 359 QEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRarlLVENVRKEKVDLSNQLEE 438
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLER---EIERLERELEERERRRAR 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 439 ERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAE----KSRVLQLEEELS 514
Cdd:COG4913 364 LEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEiaslERRKSNIPARLL 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 515 LRRGEIEElqhcllQSGPPPADHPEAAETLRLR----------ERLLsaskeHQRDSTLL-QDKYEHMLKTYqteVDKLR 583
Cdd:COG4913 444 ALRDALAE------ALGLDEAELPFVGELIEVRpeeerwrgaiERVL-----GGFALTLLvPPEHYAAALRW---VNRLH 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 584 AANEKYAQEVADLKAKVQQATTENMGLMDnwksKLDSLASDHQK----------------SLEDLKAT--------LNSG 639
Cdd:COG4913 510 LRGRLVYERVRTGLPDPERPRLDPDSLAG----KLDFKPHPFRAwleaelgrrfdyvcvdSPEELRRHpraitragQVKG 585
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 640 PGAQQkEIGELKALVEgikmEHQLELGNLQAKHDLEtamhgKEKEGLRQKLQEVQEELAGLQQhWREQLEEQASQHR--- 716
Cdd:COG4913 586 NGTRH-EKDDRRRIRS----RYVLGFDNRAKLAALE-----AELAELEEELAEAEERLEALEA-ELDALQERREALQrla 654
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 717 ------LELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEFLKEQISLAEKKmldYEMLQRAEAQSRQEAERLREKLLV 790
Cdd:COG4913 655 eyswdeIDVASAEREIAELEAELERLDASSDDLAALEEQLEELEAELEELEEE---LDELKGEIGRLEKELEQAEEELDE 731
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907163864 791 AENRLQAAESLCSAQHS----HVIESSDLSEETIRMKETVEGLQDKLN-KRDKEVTALTSQM 847
Cdd:COG4913 732 LQDRLEAAEDLARLELRalleERFAAALGDAVERELRENLEERIDALRaRLNRAEEELERAM 793
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
405-603 |
1.39e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 55.41 E-value: 1.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 405 EQYVAE-AEEKLQRARLLVENVRKEKVDLSNQLEEERRKVEDlqFRVEEESItkgDLETQTQLEHARIGELEQSLL---L 480
Cdd:COG3206 159 EAYLEQnLELRREEARKALEFLEEQLPELRKELEEAEAALEE--FRQKNGLV---DLSEEAKLLLQQLSELESQLAearA 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 481 EKAQAERLLRELAD------NRLTTVAEKSRVLQLEEELSLRRGEIEELqhcLLQSGPppaDHPEAAETLRLRERLLSas 554
Cdd:COG3206 234 ELAEAEARLAALRAqlgsgpDALPELLQSPVIQQLRAQLAELEAELAEL---SARYTP---NHPDVIALRAQIAALRA-- 305
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1907163864 555 kehqrdstLLQDKYEHMLKTYQTEVDKLRAANEKYAQEVADLKAKVQQA 603
Cdd:COG3206 306 --------QLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAEL 346
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
341-785 |
1.39e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 55.16 E-value: 1.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 341 LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERaEVAKATSHICEVEKEIALLKAQHEQYvAEAEEKLQRARL 420
Cdd:COG4717 93 LQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQ-ELEALEAELAELPERLEELEERLEEL-RELEEELEELEA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 421 LVENVRKEKVDL--------SNQLEEERRKVEDLQFRVEEesitkgdLETQTQLEHARIGELEQSL--LLEKAQAERLLR 490
Cdd:COG4717 171 ELAELQEELEELleqlslatEEELQDLAEELEELQQRLAE-------LEEELEEAQEELEELEEELeqLENELEAAALEE 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 491 ELADNRLTTVAEKSRVLQLEEELSLRRGEIEELQHCLLQSGPPPADHPEAAETLRLRERLLSASKEHQRDSTLLQDKYEH 570
Cdd:COG4717 244 RLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEE 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 571 MLKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTEN--MGLMDNWKSKLDSLASDHQKSLEDLKATLNsgpgaQQKEIG 648
Cdd:COG4717 324 LLAALGLPPDLSPEELLELLDRIEELQELLREAEELEeeLQLEELEQEIAALLAEAGVEDEEELRAALE-----QAEEYQ 398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 649 ELKALVEgiKMEHQLELGNLQAKHDLETAmhgkEKEGLRQKLQEVQEELAGLQQhwreqleeqasqhrlELQEAQDQCRD 728
Cdd:COG4717 399 ELKEELE--ELEEQLEELLGELEELLEAL----DEEELEEELEELEEELEELEE---------------ELEELREELAE 457
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 1907163864 729 AQLRAQELEGlDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERLR 785
Cdd:COG4717 458 LEAELEQLEE-DGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREER 513
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
394-756 |
2.04e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 2.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 394 EKEIALLKAQHEqyvaEAEEKLQRARLLVENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGE 473
Cdd:TIGR02168 224 ELELALLVLRLE----ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 474 LEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEELSLRRGEIEELQHCLLQSgppPADHPEAAETLRLRERLLSA 553
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESL---EAELEELEAELEELESRLEE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 554 SKEHqrdstllqdkyehmLKTYQTEVDKLRaanekyaQEVADLKAKVQQAttenmglmdnwKSKLDSLASDHQKSLEDLK 633
Cdd:TIGR02168 377 LEEQ--------------LETLRSKVAQLE-------LQIASLNNEIERL-----------EARLERLEDRRERLQQEIE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 634 AtlnsgpgaqqkeigELKALVEGIKMEHQLELGNLQakhdletamhgKEKEGLRQKLQEVQEELaglqqhwrEQLEEQAS 713
Cdd:TIGR02168 425 E--------------LLKKLEEAELKELQAELEELE-----------EELEELQEELERLEEAL--------EELREELE 471
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 1907163864 714 QHRLELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEFLKEQ 756
Cdd:TIGR02168 472 EAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKN 514
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
341-756 |
3.67e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 3.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 341 LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARL 420
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 421 LVENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTV 500
Cdd:COG1196 408 AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 501 AEKSRVLQLEEELSLRRGEIEELQHCLLQSGPPP---------------ADHPEAAETLRLRERL--------------- 550
Cdd:COG1196 488 EAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGlagavavligveaayEAALEAALAAALQNIVveddevaaaaieylk 567
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 551 ---------LSASKEHQRDSTLLQDKYEHMLKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTENMGLM--------DN 613
Cdd:COG1196 568 aakagratfLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRravtlagrLR 647
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 614 WKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKALVEGIKMEHQLELGNLQAKHDLETAMHGKEKEGLRQKLQEV 693
Cdd:COG1196 648 EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907163864 694 QEELAGLQQHWREQLEEQASQHRLE---------LQEAQDQCRDAQLRAQELEGLDV----EYRGQAQAIEFLKEQ 756
Cdd:COG1196 728 EQLEAEREELLEELLEEEELLEEEAleelpeppdLEELERELERLEREIEALGPVNLlaieEYEELEERYDFLSEQ 803
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
477-799 |
5.60e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 53.48 E-value: 5.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 477 SLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEELSLRRgEIEELQhclLQSGPPPADHPEAAETLRLRERLlsaSKE 556
Cdd:COG3206 58 TLLVEPQSSDVLLSGLSSLSASDSPLETQIEILKSRPVLER-VVDKLN---LDEDPLGEEASREAAIERLRKNL---TVE 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 557 HQRDSTLLQDKYEH------------MLKTYQTE-----VDKLRAANEKYAQEVADLKAKVQQATT------ENMGLMDn 613
Cdd:COG3206 131 PVKGSNVIEISYTSpdpelaaavanaLAEAYLEQnlelrREEARKALEFLEEQLPELRKELEEAEAaleefrQKNGLVD- 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 614 wkskLDSLASDHQKSLEDLKATLNsgpgAQQKEIGELKALVEGIkmEHQLELGNLQAKHDLETAmhgkEKEGLRQKLQEV 693
Cdd:COG3206 210 ----LSEEAKLLLQQLSELESQLA----EARAELAEAEARLAAL--RAQLGSGPDALPELLQSP----VIQQLRAQLAEL 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 694 QEELAGLQQHWREQlEEQASQHRLELQEAQDQCRdaQLRAQELEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRA 773
Cdd:COG3206 276 EAELAELSARYTPN-HPDVIALRAQIAALRAQLQ--QEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAE 352
|
330 340
....*....|....*....|....*.
gi 1907163864 774 EAQSRQEAERLREKLLVAENRLQAAE 799
Cdd:COG3206 353 LRRLEREVEVARELYESLLQRLEEAR 378
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
363-848 |
9.89e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 52.87 E-value: 9.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 363 KEKQQHIEQLLAERDLERAEVAKATSHICEvekeiaLLKAQHEQYvAEAEEklQRARLL------------VENVRKEKV 430
Cdd:pfam01576 18 KERQQKAESELKELEKKHQQLCEEKNALQE------QLQAETELC-AEAEE--MRARLAarkqeleeilheLESRLEEEE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 431 DLSNQLEEERRK----VEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRE--LADNRLttvAEKS 504
Cdd:pfam01576 89 ERSQQLQNEKKKmqqhIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKErkLLEERI---SEFT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 505 RVLQLEEELSLRRGEIEELQHCLLQsgpppadhpEAAETLR----LRERLLSASKEHQRDSTLLQDKYEHMlktyQTEVD 580
Cdd:pfam01576 166 SNLAEEEEKAKSLSKLKNKHEAMIS---------DLEERLKkeekGRQELEKAKRKLEGESTDLQEQIAEL----QAQIA 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 581 KLRAANEKYAQEVADLKAKVQQATTENMGLMDNWKsKLDSLASDHQKSLE-------------------------DLKAT 635
Cdd:pfam01576 233 ELRAQLAKKEEELQAALARLEEETAQKNNALKKIR-ELEAQISELQEDLEseraarnkaekqrrdlgeelealktELEDT 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 636 LNSgPGAQQ-------KEIGELKALVEGIKMEHQLELGNLQAKH---------DLETAMHG-----KEKEGLRQKLQEVQ 694
Cdd:pfam01576 312 LDT-TAAQQelrskreQEVTELKKALEEETRSHEAQLQEMRQKHtqaleelteQLEQAKRNkanleKAKQALESENAELQ 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 695 EELAGLQQ------HWREQLEEQASQHRLELQEAQDQCRDAQLRAQ----ELEGLD-VEYRGQAQAIEFLKEQISLAEKK 763
Cdd:pfam01576 391 AELRTLQQakqdseHKRKKLEGQLQELQARLSESERQRAELAEKLSklqsELESVSsLLNEAEGKNIKLSKDVSSLESQL 470
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 764 MLDYEMLQRAEAQSRQEAERLREkLLVAENRLQ--------AAESLCSAQHSHVIESSDLSEETIRMKETVEGLQDKLNK 835
Cdd:pfam01576 471 QDTQELLQEETRQKLNLSTRLRQ-LEDERNSLQeqleeeeeAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKR 549
|
570
....*....|...
gi 1907163864 836 RDKEVTALTSQMD 848
Cdd:pfam01576 550 LQRELEALTQQLE 562
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
359-788 |
1.70e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.96 E-value: 1.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 359 QEALKEKQQHIEQLlAERDLErAEVAKATSHICEVEKEIALLKAQHEQyvaeAEEKLQRARLLVENVRKEKVDLSnQLEE 438
Cdd:PRK02224 186 RGSLDQLKAQIEEK-EEKDLH-ERLNGLESELAELDEEIERYEEQREQ----ARETRDEADEVLEEHEERREELE-TLEA 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 439 ErrkVEDLQFRVEEESITKGDLETQTQLEHARIGELEqslllekaqaERLLRELADNRLTTvAEKSRVLQLEEELSLRRG 518
Cdd:PRK02224 259 E---IEDLRETIAETEREREELAEEVRDLRERLEELE----------EERDDLLAEAGLDD-ADAEAVEARREELEDRDE 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 519 EIEE-LQHCLLQSGpppaDHPEAAETLRLR-ERLLSASKEHQRDSTLLQDKyehmLKTYQTEVDKLRAANEKYAQEVADL 596
Cdd:PRK02224 325 ELRDrLEECRVAAQ----AHNEEAESLREDaDDLEERAEELREEAAELESE----LEEAREAVEDRREEIEELEEEIEEL 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 597 KAKVQQATTEnmglMDNWKSKLDSLASDHQK---SLEDLKATLNSgpgaQQKEIGELKAL------------------VE 655
Cdd:PRK02224 397 RERFGDAPVD----LGNAEDFLEELREERDElreREAELEATLRT----ARERVEEAEALleagkcpecgqpvegsphVE 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 656 GI------KMEHQLELGNLQAKHD-----LETAMHGKEKEGLRQKLQEVQEELAGLQQHWREQLEE---QASQHRLELQE 721
Cdd:PRK02224 469 TIeedrerVEELEAELEDLEEEVEeveerLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEkreRAEELRERAAE 548
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907163864 722 AQDQCRDAQLRAQELEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKL 788
Cdd:PRK02224 549 LEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKR 615
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
359-784 |
1.74e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.89 E-value: 1.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 359 QEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLVENVR---------KEK 429
Cdd:TIGR00618 437 QRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCplcgscihpNPA 516
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 430 VDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSllLEKAQAERLLRELADNRLTTVAEK-----S 504
Cdd:TIGR00618 517 RQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQ--MQEIQQSFSILTQCDNRSKEDIPNlqnitV 594
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 505 RVLQLEEELSLRRGEIEELQHCLLQSGPPPADHPEAAETLRLRERLLSASKE--HQRDSTLLQDKYEHML---KTYQTEV 579
Cdd:TIGR00618 595 RLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTalHALQLTLTQERVREHAlsiRVLPKEL 674
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 580 DKLRAANEKYAQEVADLKAKVQQATTENMGLMDNWKSKL---DSLASDHQKSLEDLKATLNSGPGAQQKEIGELKALVEg 656
Cdd:TIGR00618 675 LASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIeeyDREFNEIENASSSLGSDLAAREDALNQSLKELMHQAR- 753
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 657 IKMEHQLELGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLQQHWReQLEEQASQHRLE-LQEAQDQCrdaQLRAQE 735
Cdd:TIGR00618 754 TVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLK-TLEAEIGQEIPSdEDILNLQC---ETLVQE 829
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 1907163864 736 LEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERL 784
Cdd:TIGR00618 830 EEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKL 878
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
407-798 |
2.08e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 51.88 E-value: 2.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 407 YVAEAEEKLQRARLLVEnVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLllekAQAE 486
Cdd:COG3096 273 YMRHANERRELSERALE-LRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDHLNLVQTAL----RQQE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 487 RLLRELADnrlttvaeksrVLQLEEELSLRRGEIEELQHcllqsgpppadhpeaaETLRLRERLLSASKEHQRDSTLLQD 566
Cdd:COG3096 348 KIERYQED-----------LEELTERLEEQEEVVEEAAE----------------QLAEAEARLEAAEEEVDSLKSQLAD 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 567 kYEHMLKT-------YQTEVDKLRAAN----------EKYAQEVADLKAKVQQATTENMGLmdnwKSKL---DSLASDHQ 626
Cdd:COG3096 401 -YQQALDVqqtraiqYQQAVQALEKARalcglpdltpENAEDYLAAFRAKEQQATEEVLEL----EQKLsvaDAARRQFE 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 627 KSLEDLKA------TLNSGPGAQQkeigelkALVEGIKMEHQLE-LGNLQAK-HDLETAMHgkekegLRQKLQEVQEEL- 697
Cdd:COG3096 476 KAYELVCKiageveRSQAWQTARE-------LLRRYRSQQALAQrLQQLRAQlAELEQRLR------QQQNAERLLEEFc 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 698 --AGLQQHWREQLEEQASQHRLELQEAQDQCRDA-----QLRAQ--ELEGLDVEYRGQA-------QAIEFLKEQI--SL 759
Cdd:COG3096 543 qrIGQQLDAAEELEELLAELEAQLEELEEQAAEAveqrsELRQQleQLRARIKELAARApawlaaqDALERLREQSgeAL 622
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 1907163864 760 AEKKMLDYEMLQ-----RAEAQSRQEAERLREKLLVAENRLQAA 798
Cdd:COG3096 623 ADSQEVTAAMQQllereREATVERDELAARKQALESQIERLSQP 666
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
617-800 |
2.86e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.92 E-value: 2.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 617 KLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKALVEGIKmehQLELGNLQAKHDLETAMHGKEKEGLRQKLQEVQEE 696
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELE---ELEAELEELREELEKLEKLLQLLPLYQELEALEAE 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 697 LAGLQQHWreqleEQASQHRLELQEAQDQCRDAQLRAQELEgldveyrgqaQAIEFLKEQISLAEKKML-----DYEMLQ 771
Cdd:COG4717 141 LAELPERL-----EELEERLEELRELEEELEELEAELAELQ----------EELEELLEQLSLATEEELqdlaeELEELQ 205
|
170 180
....*....|....*....|....*....
gi 1907163864 772 RAEAQSRQEAERLREKLLVAENRLQAAES 800
Cdd:COG4717 206 QRLAELEEELEEAQEELEELEEELEQLEN 234
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
412-855 |
3.09e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.27 E-value: 3.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 412 EEKLQRARLLVENVRKEKVDlsNQLEEERRKVEDLQFRVEEESitkgdletqtQLEHARIGELEQSLLlekaQAERLLRE 491
Cdd:pfam15921 58 EVELDSPRKIIAYPGKEHIE--RVLEEYSHQVKDLQRRLNESN----------ELHEKQKFYLRQSVI----DLQTKLQE 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 492 LADNRLTTVAEKSRVLQLEEELslrRGEIEELQHCLlqsgpppadhpEAAETLRlrerllsaskehqrdstllqdkyEHM 571
Cdd:pfam15921 122 MQMERDAMADIRRRESQSQEDL---RNQLQNTVHEL-----------EAAKCLK-----------------------EDM 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 572 LKTYQTEVDKLRA---ANEKYAQEVADLKAKVQQATTENMGLMDNWKS-KLDSLASDHQKSLEDLKATLNSGPGAQQKEI 647
Cdd:pfam15921 165 LEDSNTQIEQLRKmmlSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTmHFRSLGSAISKILRELDTEISYLKGRIFPVE 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 648 GELKAL-------VEGIKMEHQLELGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLQQHWREQ----------LEE 710
Cdd:pfam15921 245 DQLEALksesqnkIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQnsmymrqlsdLES 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 711 QASQHRLELQEAQDQCRDaqlraqelegldveyrgqaqAIEFLKEQISLAEKKMLDyemlQRAEA-QSRQEAERLREKLl 789
Cdd:pfam15921 325 TVSQLRSELREAKRMYED--------------------KIEELEKQLVLANSELTE----ARTERdQFSQESGNLDDQL- 379
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907163864 790 vaenrlqaaESLCSAQHSHVIESSDLSEETIRMKE-------TVEGLQDKLNKRDKEVTALTSQMDMLRAQSQ 855
Cdd:pfam15921 380 ---------QKLLADLHKREKELSLEKEQNKRLWDrdtgnsiTIDHLRRELDDRNMEVQRLEALLKAMKSECQ 443
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
341-803 |
4.16e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.45 E-value: 4.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 341 LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQY--VAEAEEKLQRA 418
Cdd:PRK03918 298 LSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYeeAKAKKEELERL 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 419 RLLVENVRKEKVDlsNQLEEERRKVEDLQFRVEEESITKGDLETqtqlehaRIGELEQSLL-LEKAQAE-----RLLREl 492
Cdd:PRK03918 378 KKRLTGLTPEKLE--KELEELEKAKEEIEEEISKITARIGELKK-------EIKELKKAIEeLKKAKGKcpvcgRELTE- 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 493 aDNRLTTVAE--------KSRVLQLEEELSLRRGEIEELQHCLLQSGPPPADHPEAAETLRLRERLLSASKEHQRDSTLL 564
Cdd:PRK03918 448 -EHRKELLEEytaelkriEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEE 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 565 QDKYEHMLKTYQTEVDKLraanEKYAQEVADLKAKVQQATTENMGLMDNWKSKLDSLASDHQKSLEDLKatlnsgpgaqq 644
Cdd:PRK03918 527 YEKLKEKLIKLKGEIKSL----KKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELE----------- 591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 645 KEIGELKAL----VEGIKMEHQLE-LGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLQQHWREQLEEQASQHRLEL 719
Cdd:PRK03918 592 ERLKELEPFyneyLELKDAEKELErEEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLEL 671
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 720 QEAQdqcrdAQLRAqELEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAeaqsRQEAERLREKL-----LVAENR 794
Cdd:PRK03918 672 SREL-----AGLRA-ELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKA----LERVEELREKVkkykaLLKERA 741
|
....*....
gi 1907163864 795 LQAAESLCS 803
Cdd:PRK03918 742 LSKVGEIAS 750
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
340-744 |
6.54e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 50.11 E-value: 6.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 340 LLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDL---ERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQ 416
Cdd:pfam05483 381 IITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKlldEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLT 460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 417 RARLLVENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADnr 496
Cdd:pfam05483 461 AIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIEN-- 538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 497 lttvaeksrvlqLEEELSLRRGEIEELQHCLLQSGpppadhpeaaETLRLRerlLSASKEHQRDSTLLQDKYEHMLKTYQ 576
Cdd:pfam05483 539 ------------LEEKEMNLRDELESVREEFIQKG----------DEVKCK---LDKSEENARSIEYEVLKKEKQMKILE 593
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 577 TEVDKLRAANEKYAQEVADL----KAKVQQATTENMGL-------------MDNWKSKLDSLASDHQKSLEDLKATLNSG 639
Cdd:pfam05483 594 NKCNNLKKQIENKNKNIEELhqenKALKKKGSAENKQLnayeikvnkleleLASAKQKFEEIIDNYQKEIEDKKISEEKL 673
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 640 PGaqqkEIGELKALV-EGIKMEHQLELgNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLQQHWREQ------LEEQA 712
Cdd:pfam05483 674 LE----EVEKAKAIAdEAVKLQKEIDK-RCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQssakaaLEIEL 748
|
410 420 430
....*....|....*....|....*....|..
gi 1907163864 713 SQHRLELQEAQDQCrdaQLRAQELEGLDVEYR 744
Cdd:pfam05483 749 SNIKAELLSLKKQL---EIEKEEKEKLKMEAK 777
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
340-855 |
8.59e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 49.72 E-value: 8.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 340 LLTETSSRYARKISGTTALQEALKEK----QQHIEQL-LAERDLE-RAEVAKATSH--ICEVEKEIALLKAQHEQYVAEA 411
Cdd:pfam05483 159 LLKETCARSAEKTKKYEYEREETRQVymdlNNNIEKMiLAFEELRvQAENARLEMHfkLKEDHEKIQHLEEEYKKEINDK 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 412 EEklQRARLLVENVRKEKV--DLSNQLEEERRKVEdlqfrveeesitkgDLETQTQLEHARIGELEQslllekaQAERLL 489
Cdd:pfam05483 239 EK--QVSLLLIQITEKENKmkDLTFLLEESRDKAN--------------QLEEKTKLQDENLKELIE-------KKDHLT 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 490 RELADNRLTTVAEKSRVLQLEEELSLRRGEIEELQhcllqsgpppadhpEAAETlrLRERLLSASKEHQRDSTLLQDKYE 569
Cdd:pfam05483 296 KELEDIKMSLQRSMSTQKALEEDLQIATKTICQLT--------------EEKEA--QMEELNKAKAAHSFVVTEFEATTC 359
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 570 HMLKTYQTEVDKLraanEKYAQEVADLKAKVQQATTEnmglmdnwKSKLDSLASDHQKSLEDLKATLnsgpGAQQK---E 646
Cdd:pfam05483 360 SLEELLRTEQQRL----EKNEDQLKIITMELQKKSSE--------LEEMTKFKNNKEVELEELKKIL----AEDEKlldE 423
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 647 IGELKALVEGIKMEHQLELGNLQAK----HDLETAMHGKeKEGLRQKLQEVQEELAGLQQHWREQLEEQASQHRLELQEA 722
Cdd:pfam05483 424 KKQFEKIAEELKGKEQELIFLLQARekeiHDLEIQLTAI-KTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENK 502
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 723 QdqcrdaqlRAQELEGLDVEYRGQAQAIEFLKEQislaEKKML-DYEMLQRAEAQSRQEAERLREKLlvaenRLQAAESL 801
Cdd:pfam05483 503 E--------LTQEASDMTLELKKHQEDIINCKKQ----EERMLkQIENLEEKEMNLRDELESVREEF-----IQKGDEVK 565
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 1907163864 802 CSAQHSHViESSDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQSQ 855
Cdd:pfam05483 566 CKLDKSEE-NARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENK 618
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
357-524 |
1.35e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 1.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 357 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQheqyVAEAEEKLQRARLLVENVRKEKVDLSNQL 436
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR----IRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 437 EEERRKVEDL---QFRVEEESITKGDLETQTQLEHARIGELEQSLLLE-KAQAERL---LRELADNRLTTVAEKSRVLQL 509
Cdd:COG4942 100 EAQKEELAELlraLYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPArREQAEELradLAELAALRAELEAERAELEAL 179
|
170
....*....|....*
gi 1907163864 510 EEELSLRRGEIEELQ 524
Cdd:COG4942 180 LAELEEERAALEALK 194
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
350-846 |
2.09e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.18 E-value: 2.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 350 RKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKAtshicevekeiallKAQHEQYVAEAEEKLQRarlLVENVRKEK 429
Cdd:pfam05483 307 RSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKA--------------KAAHSFVVTEFEATTCS---LEELLRTEQ 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 430 VDLSNQLEEERRKVEDLQFRVEE-ESITKGDLETQTQLEHAR--IGElEQSLLLEKAQAERLLRELadnrlttvaeKSRV 506
Cdd:pfam05483 370 QRLEKNEDQLKIITMELQKKSSElEEMTKFKNNKEVELEELKkiLAE-DEKLLDEKKQFEKIAEEL----------KGKE 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 507 LQLEEELSLRRGEIEELQHCLLQSGPPPADHPEAAETLRL---RERLLSASKEHQRDSTLLQDK--------YEHMLKTY 575
Cdd:pfam05483 439 QELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTeleKEKLKNIELTAHCDKLLLENKeltqeasdMTLELKKH 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 576 QTEVDKLRAANEKYAQEVADLKAKVQQATTENMGLMDNWKSKLDSLASDHQKSLEDLKaTLNSGPGAQQKEIGELKALVE 655
Cdd:pfam05483 519 QEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENAR-SIEYEVLKKEKQMKILENKCN 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 656 GIKMEHQLELGNLQAKHDLETAMHGKEKEGLRQ------KLQEVQEELAGLQQHWREQL---EEQASQHRLELQEAQDQC 726
Cdd:pfam05483 598 NLKKQIENKNKNIEELHQENKALKKKGSAENKQlnayeiKVNKLELELASAKQKFEEIIdnyQKEIEDKKISEEKLLEEV 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 727 RDAQLRAQELEGLDVEYRGQAQaiEFLKEQISLAEKKMLDYEMLqraeaqsrqeAERLREKLLVAENRLQAAESLCSAQH 806
Cdd:pfam05483 678 EKAKAIADEAVKLQKEIDKRCQ--HKIAEMVALMEKHKHQYDKI----------IEERDSELGLYKNKEQEQSSAKAALE 745
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 1907163864 807 shvIESSDLSEETIRMKETVE---GLQDKLNKRDKEVTALTSQ 846
Cdd:pfam05483 746 ---IELSNIKAELLSLKKQLEiekEEKEKLKMEAKENTAILKD 785
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
457-806 |
2.32e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 48.30 E-value: 2.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 457 KGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTT--VAEKSRVLQLEEELSLRRGEIEELQHCllqsgppp 534
Cdd:pfam12128 192 EGKFRDVKSMIVAILEDDGVVPPKSRLNRQQVEHWIRDIQAIAgiMKIRPEFTKLQQEFNTLESAELRLSHL-------- 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 535 adHPEAAETLRLRERLLSASKEHQRDSTLLQDKYEHMLKTYQTEVD-KLRAANEKYAQEVADLKAKVQQATTENMGLMDN 613
Cdd:pfam12128 264 --HFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNgELSAADAAVAKDRSELEALEDQHGAFLDADIET 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 614 WKSKLDSLASdHQKSLEDLKATLNSGPGAQQKEIGELKALVEGIKMEHQLELGNLQAKHDletamhgKEKEGLRQKLQEV 693
Cdd:pfam12128 342 AAADQEQLPS-WQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLA-------KIREARDRQLAVA 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 694 QEELAGLQQHWREQLE-------EQASQHRLELQEAQDQCRDAQLRAQELEGLdveyRGQAQAIEFLKEQISLAEKKMLD 766
Cdd:pfam12128 414 EDDLQALESELREQLEagklefnEEEYRLKSRLGELKLRLNQATATPELLLQL----ENFDERIERAREEQEAANAEVER 489
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1907163864 767 yemLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSAQH 806
Cdd:pfam12128 490 ---LQSELRQARKRRDQASEALRQASRRLEERQSALDELE 526
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
358-703 |
2.36e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.09 E-value: 2.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 358 LQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLL---VENVRKEKVDLSN 434
Cdd:TIGR04523 361 KQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLekeIERLKETIIKNNS 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 435 QLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQ-----------------SLLLEKAQAERLLRELADN-- 495
Cdd:TIGR04523 441 EIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQnleqkqkelkskekelkKLNEEKKELEEKVKDLTKKis 520
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 496 RLTTVAEK--SRVLQLEEELSLRRGEIEELQHCLlqsgpppaDHPEAAETLRLRERLLSASKEHQRDSTLLQDKYEHMLK 573
Cdd:TIGR04523 521 SLKEKIEKleSEKKEKESKISDLEDELNKDDFEL--------KKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELID 592
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 574 TYQTEVDKLRAANEKYAQEVADLKAKVQQATTENMGL---MDNWKSKLDSLASDHQKSLEDLKATLNSGPGAqQKEIGEL 650
Cdd:TIGR04523 593 QKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLssiIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEI-IKKIKES 671
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1907163864 651 KALVEGIK--MEHQLELGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLQQH 703
Cdd:TIGR04523 672 KTKIDDIIelMKDWLKELSLHYKKYITRMIRIKDLPKLEEKYKEIEKELKKLDEF 726
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
674-855 |
2.89e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.01 E-value: 2.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 674 LETAMHGKEKEGLRQKLQEVQEELAGLQQHwREQLEEQASQHRLELQEAQDQCRDAQLRAQELEGLdvEYRGQAQAIEFL 753
Cdd:COG1196 225 LEAELLLLKLRELEAELEELEAELEELEAE-LEELEAELAELEAELEELRLELEELELELEEAQAE--EYELLAELARLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 754 KEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSAQHSHVIESSDLSEETIRMKETVEGLQDKL 833
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL 381
|
170 180
....*....|....*....|..
gi 1907163864 834 NKRDKEVTALTSQMDMLRAQSQ 855
Cdd:COG1196 382 EELAEELLEALRAAAELAAQLE 403
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
689-855 |
2.98e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.46 E-value: 2.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 689 KLQEVQEELAGLQqHWREQLEEQASQHRLELQEAQDQCRDAQlraQELEGLDVEYRGQAQAIEFLKEQISLAEKKML--- 765
Cdd:COG1579 11 DLQELDSELDRLE-HRLKELPAELAELEDELAALEARLEAAK---TELEDLEKEIKRLELEIEEVEARIKKYEEQLGnvr 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 766 ---DYEMLQRAEAQSRQEAERLREKLLVAENRLQAAESlcsaqhshviessDLSEETIRMKETVEGLQDKLNKRDKEVTA 842
Cdd:COG1579 87 nnkEYEALQKEIESLKRRISDLEDEILELMERIEELEE-------------ELAELEAELAELEAELEEKKAELDEELAE 153
|
170
....*....|...
gi 1907163864 843 LTSQMDMLRAQSQ 855
Cdd:COG1579 154 LEAELEELEAERE 166
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
346-853 |
3.55e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.75 E-value: 3.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 346 SRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEqyvaEAEEKLQRARLLVENV 425
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKE----EIEELEKELESLEGSK 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 426 RKEKVDLSN---QLEEERRKVEDLQFRVEEESITKGDLEtqtqlEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAE 502
Cdd:PRK03918 255 RKLEEKIREleeRIEELKKEIEELEEKVKELKELKEKAE-----EYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEER 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 503 KSRVLQLEEELSLRRGEIEELQHcllqsgpppaDHPEAAETLRLRERLLSASKEHQRDSTLLQDKYEHMLKtyqTEVDKL 582
Cdd:PRK03918 330 IKELEEKEERLEELKKKLKELEK----------RLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLE---KELEEL 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 583 RAANEKYAQEVADLKAKvqqattenmglmdnwKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKalvEGIKMEHQ 662
Cdd:PRK03918 397 EKAKEEIEEEISKITAR---------------IGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHR---KELLEEYT 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 663 LELGNLQAkhdlETAMHGKEKEGLRQKLQEVQEELAGLQQHWR--------EQLEEQASQHRLElqEAQDQCRDAQLRAQ 734
Cdd:PRK03918 459 AELKRIEK----ELKEIEEKERKLRKELRELEKVLKKESELIKlkelaeqlKELEEKLKKYNLE--ELEKKAEEYEKLKE 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 735 ELEGLDVEYRGQAQAIEFLKEqisLAEKKMLDYEMLQRAEAQSRQEAERLREK----LLVAENRLQAAESLcsaqHSHVI 810
Cdd:PRK03918 533 KLIKLKGEIKSLKKELEKLEE---LKKKLAELEKKLDELEEELAELLKELEELgfesVEELEERLKELEPF----YNEYL 605
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 1907163864 811 ESSDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQ 853
Cdd:PRK03918 606 ELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKE 648
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
349-795 |
4.08e-05 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 47.43 E-value: 4.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 349 ARKISGTTALQEALKE-KQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLK--AQHEQYVAEAEEKLQ----RARLL 421
Cdd:pfam05557 2 AELIESKARLSQLQNEkKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKriRLLEKREAEAEEALReqaeLNRLK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 422 VENV------RKEKVD-----------LSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQslllEKAQ 484
Cdd:pfam05557 82 KKYLealnkkLNEKESqladareviscLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQ----LRQN 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 485 AERLLRELADNRLttvaeksRVLQLEEELSLRRGEIEELQHCllqsgppPADHPEAAETLRLRERLLSASK---EHQRDS 561
Cdd:pfam05557 158 LEKQQSSLAEAEQ-------RIKELEFEIQSQEQDSEIVKNS-------KSELARIPELEKELERLREHNKhlnENIENK 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 562 TLLQDKYEHM------LKTYQTEVDKLRAANEKYAQEVADLKaKVQQATTENMGLMDNWKSKLDSLASDhQKSLEDLKAT 635
Cdd:pfam05557 224 LLLKEEVEDLkrklerEEKYREEAATLELEKEKLEQELQSWV-KLAQDTGLNLRSPEDLSRRIEQLQQR-EIVLKEENSS 301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 636 LNSGPGAQQKEIGEL---------KALVEGIKMEHQLELGN-LQAKHDLETamhgKEKEGLRQKLQEVQEELAglqqhwr 705
Cdd:pfam05557 302 LTSSARQLEKARRELeqelaqylkKIEDLNKKLKRHKALVRrLQRRVLLLT----KERDGYRAILESYDKELT------- 370
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 706 eqLEEQASQHRLELQEAQDQCRDAQLRAQELE-GLDV------EYRGQAQAIE----FLKEQISLAEKKML--DYEMLQR 772
Cdd:pfam05557 371 --MSNYSPQLLERIEEAEDMTQKMQAHNEEMEaQLSVaeeelgGYKQQAQTLErelqALRQQESLADPSYSkeEVDSLRR 448
|
490 500
....*....|....*....|...
gi 1907163864 773 AEAQSRQEAERLREKLLVAENRL 795
Cdd:pfam05557 449 KLETLELERQRLREQKNELEMEL 471
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
334-843 |
4.25e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.37 E-value: 4.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 334 RPSRSGLLTETSSRYAR------KISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQY 407
Cdd:PRK03918 216 LPELREELEKLEKEVKEleelkeEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEY 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 408 VAEAEEKLQRARLLvENVRKEKVDLSNQLEEERRKVEDLQFRVEE-ESITKGDLETQTQLEharigELEQSLLL------ 480
Cdd:PRK03918 296 IKLSEFYEEYLDEL-REIEKRLSRLEEEINGIEERIKELEEKEERlEELKKKLKELEKRLE-----ELEERHELyeeaka 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 481 EKAQAERLLRELADNRLTTVAEK-----SRVLQLEEELSLRRGEIEELQHcllqsgpppadhpEAAETLRLRERLLSASK 555
Cdd:PRK03918 370 KKEELERLKKRLTGLTPEKLEKEleeleKAKEEIEEEISKITARIGELKK-------------EIKELKKAIEELKKAKG 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 556 EHQRDSTLLQDKYE-HMLKTYQTEVDKLRAANEKYAQEVADLKAKVQQatTENMGLMDNWKSKLDSLASDHQKSLEDLKA 634
Cdd:PRK03918 437 KCPVCGRELTEEHRkELLEEYTAELKRIEKELKEIEEKERKLRKELRE--LEKVLKKESELIKLKELAEQLKELEEKLKK 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 635 TLNSGPGAQQKEIGELKALVEGIKMEHQLELGNLQAKHDLEtamhgKEKEGLRQKLQEVQEELAGLQQhwreQLEEQASQ 714
Cdd:PRK03918 515 YNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELK-----KKLAELEKKLDELEEELAELLK----ELEELGFE 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 715 HRLELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYE-MLQRAEAQ--------SRQEAERLR 785
Cdd:PRK03918 586 SVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEkRLEELRKEleelekkySEEEYEELR 665
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907163864 786 EKLLVAENRLQAAESLCSAQHSHV--IESS--DLSEETIRMKETVEGLQdKLNKRDKEVTAL 843
Cdd:PRK03918 666 EEYLELSRELAGLRAELEELEKRReeIKKTleKLKEELEEREKAKKELE-KLEKALERVEEL 726
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
659-848 |
5.20e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.69 E-value: 5.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 659 MEHQLELGNLQAKhDLETAMHGKEKEGLRQKLQEVQEELAGLQQHwREQLEEQASQHRLELQEAQDQCRDAQLRAQELEG 738
Cdd:COG1579 3 PEDLRALLDLQEL-DSELDRLEHRLKELPAELAELEDELAALEAR-LEAAKTELEDLEKEIKRLELEIEEVEARIKKYEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 739 -LDV-----EYRGQAQAIEFLKEQISLAEKKMLDYEMlqraeaqsrqEAERLREKLLVAENRLQAAEslcsaqhshvies 812
Cdd:COG1579 81 qLGNvrnnkEYEALQKEIESLKRRISDLEDEILELME----------RIEELEEELAELEAELAELE------------- 137
|
170 180 190
....*....|....*....|....*....|....*.
gi 1907163864 813 SDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMD 848
Cdd:COG1579 138 AELEEKKAELDEELAELEAELEELEAEREELAAKIP 173
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
358-523 |
5.44e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.69 E-value: 5.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 358 LQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIallkAQHEQYVAEAEEKLQRARLLVENVRKEK--VDLSNQ 435
Cdd:COG1579 22 LEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEI----KRLELEIEEVEARIKKYEEQLGNVRNNKeyEALQKE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 436 LEEERRKVEDLqfrveEESItkgdLETQTQLEHAR--IGELEQSLLLEKAQAERLLRELadnrlttvaeKSRVLQLEEEL 513
Cdd:COG1579 98 IESLKRRISDL-----EDEI----LELMERIEELEeeLAELEAELAELEAELEEKKAEL----------DEELAELEAEL 158
|
170
....*....|
gi 1907163864 514 SLRRGEIEEL 523
Cdd:COG1579 159 EELEAEREEL 168
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
379-511 |
5.71e-05 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 46.40 E-value: 5.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 379 ERAEVAKAtshicEVEKEIALLKAQHEQYVAEAEEKLQRARLLVENVRKEKvDLSNQLEEERRKVEDLQFR----VEEES 454
Cdd:COG2268 199 RDARIAEA-----EAERETEIAIAQANREAEEAELEQEREIETARIAEAEA-ELAKKKAEERREAETARAEaeaaYEIAE 272
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1907163864 455 ITKgDLETQTQLEharIGELEQSLLLEKAQAERLLREL-ADNRLTTVAEKSRVLQLEE 511
Cdd:COG2268 273 ANA-EREVQRQLE---IAEREREIELQEKEAEREEAELeADVRKPAEAEKQAAEAEAE 326
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
403-799 |
6.35e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 46.66 E-value: 6.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 403 QHEQYVAEAEEKLQRARLLVENVRKEKVDLSNQLeEERRKVEdlqfrvEEESITKGDLETQTQL--EHARIGeLEQSLLL 480
Cdd:pfam17380 279 QHQKAVSERQQQEKFEKMEQERLRQEKEEKAREV-ERRRKLE------EAEKARQAEMDRQAAIyaEQERMA-MEREREL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 481 EKAQAERLLRELADNRLTTVA-EKSRVLQLeEELSLRRGEIEElqhcllqsgpppadhpeaaetlRLRERLlsaskEHQR 559
Cdd:pfam17380 351 ERIRQEERKRELERIRQEEIAmEISRMREL-ERLQMERQQKNE----------------------RVRQEL-----EAAR 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 560 DSTLLQDKYEHMLKTYQTEVDKLRAANEKYAQEvadlkakvqqattenmglmdnwksKLDSLASDHQKSLEDLKatlnsg 639
Cdd:pfam17380 403 KVKILEEERQRKIQQQKVEMEQIRAEQEEARQR------------------------EVRRLEEERAREMERVR------ 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 640 pgaqqkeigelkalVEGIKMEHQLELgnlqakhdletaMHGKEKEGLRQKLQ--EVQEELAGLQQHWREQLEEQASQHRL 717
Cdd:pfam17380 453 --------------LEEQERQQQVER------------LRQQEEERKRKKLEleKEKRDRKRAEEQRRKILEKELEERKQ 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 718 ELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEA-ERLREKL-LVAENRL 795
Cdd:pfam17380 507 AMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAmEREREMMrQIVESEK 586
|
....
gi 1907163864 796 QAAE 799
Cdd:pfam17380 587 ARAE 590
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
362-846 |
7.08e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.55 E-value: 7.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 362 LKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEqyvaeaEEKLQRARLLVENVRKEK--VDLSNQLEEE 439
Cdd:TIGR04523 91 LKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKK------ENKKNIDKFLTEIKKKEKelEKLNNKYNDL 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 440 RRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAER---LLRELADnrlttvaEKSRVLQLEEELSLR 516
Cdd:TIGR04523 165 KKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKnksLESQISE-------LKKQNNQLKDNIEKK 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 517 RGEIEELQhcllqsgpppadhpeaAETLRLRERLLSASKEHQRDSTLLQDKyEHMLKTYQTEVDKLRAANEKYAQEVADL 596
Cdd:TIGR04523 238 QQEINEKT----------------TEISNTQTQLNQLKDEQNKIKKQLSEK-QKELEQNNKKIKELEKQLNQLKSEISDL 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 597 KAKVQQattenmglmdNWKSKLDSLASDHQKSLEDLKATLNSgpgaQQKEIGELKALVEGIKMEhqlelgnlqaKHDLET 676
Cdd:TIGR04523 301 NNQKEQ----------DWNKELKSELKNQEKKLEEIQNQISQ----NNKIISQLNEQISQLKKE----------LTNSES 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 677 AMHGKEKEgLRQKLQEVQEELAGLQQHWRE--QLEEQASQHRLELQEAQDQcrdAQLRAQELEGLDVEYRGQAQAIEFLK 754
Cdd:TIGR04523 357 ENSEKQRE-LEEKQNEIEKLKKENQSYKQEikNLESQINDLESKIQNQEKL---NQQKDEQIKKLQQEKELLEKEIERLK 432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 755 EQISlaekkmldyemlqraeaQSRQEAERLREKLLVAENRLQAAESLCSAQHSHViesSDLSEETIRMKETVEGLQDKLN 834
Cdd:TIGR04523 433 ETII-----------------KNNSEIKDLTNQDSVKELIIKNLDNTRESLETQL---KVLSRSINKIKQNLEQKQKELK 492
|
490
....*....|..
gi 1907163864 835 KRDKEVTALTSQ 846
Cdd:TIGR04523 493 SKEKELKKLNEE 504
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
679-846 |
1.26e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 679 HGKEKEGLRQKLQEVQEELAGLQqHWREQ-----LEEQASQHRLELQEAQDQCRDAQLRAQELEGLDVEYRGQ-----AQ 748
Cdd:COG4913 260 LAERYAAARERLAELEYLRAALR-LWFAQrrlelLEAELEELRAELARLEAELERLEARLDALREELDELEAQirgngGD 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 749 AIEFLKEQISLAEKKmldYEMLQRAEAQSRQEAERLREKLL-----VAENRLQAAESLCSAQhshvIESSDLSEETIRMK 823
Cdd:COG4913 339 RLEQLEREIERLERE---LEERERRRARLEALLAALGLPLPasaeeFAALRAEAAALLEALE----EELEALEEALAEAE 411
|
170 180
....*....|....*....|...
gi 1907163864 824 ETVEGLQDKLNKRDKEVTALTSQ 846
Cdd:COG4913 412 AALRDLRRELRELEAEIASLERR 434
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
361-817 |
1.39e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.81 E-value: 1.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 361 ALKEKQQHIEQLLAERDLERAEVAKATshicevEKEIALLKAQHEQYVAEAEEKLQRARLLVENVRKEKVDLSNQLEEER 440
Cdd:TIGR00606 273 ALKSRKKQMEKDNSELELKMEKVFQGT------DEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELL 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 441 RKVEDLQFRVE--EESITKGDLETQTQLEHARIGELEQSLLLEKA--QAERLLRELADNRLTTVAEKSRVLQLEEELSlr 516
Cdd:TIGR00606 347 VEQGRLQLQADrhQEHIRARDSLIQSLATRLELDGFERGPFSERQikNFHTLVIERQEDEAKTAAQLCADLQSKERLK-- 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 517 rgeieelqhcllqsgpppadhpeaaetlrlrerllsaskehQRDSTLLQDKYEHMLKTYQTEVDKLraanEKYAQEVADL 596
Cdd:TIGR00606 425 -----------------------------------------QEQADEIRDEKKGLGRTIELKKEIL----EKKQEELKFV 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 597 KAKVQQATtenmGLMDNWKSKLDSLasdhQKSLEDL-KATLNSGPGAQQKEIGELKalvegikmEHQLELGNLQAKHDLE 675
Cdd:TIGR00606 460 IKELQQLE----GSSDRILELDQEL----RKAERELsKAEKNSLTETLKKEVKSLQ--------NEKADLDRKLRKLDQE 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 676 TAMHGKEKEGLRQKLQEVQEELAGLQQ-------------------HWREQLEEQASQHRLELQEAQDQCRDAQLRAQEL 736
Cdd:TIGR00606 524 MEQLNHHTTTRTQMEMLTKDKMDKDEQirkiksrhsdeltsllgyfPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASL 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 737 EGLDVEYRGQAQAIEflkEQISLAEKKMLDYEMLQRAEAqsrqEAERLREKLLVAENRLQAAESLCSAQHSHVIESSDLS 816
Cdd:TIGR00606 604 EQNKNHINNELESKE---EQLSSYEDKLFDVCGSQDEES----DLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDEN 676
|
.
gi 1907163864 817 E 817
Cdd:TIGR00606 677 Q 677
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
356-513 |
1.77e-04 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 44.86 E-value: 1.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 356 TALQEALKEKQQHIEQLLAERDLERAEVAKATSHIcEVEKEIALLKAQHEQYVAEAEEKLQRAR------LLVENVRKEK 429
Cdd:COG2268 212 TEIAIAQANREAEEAELEQEREIETARIAEAEAEL-AKKKAEERREAETARAEAEAAYEIAEANaerevqRQLEIAERER 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 430 VDLSNQLEEERRKVEdlqfrVEEESITKGDLETQTQLEHARiGELEQSLLLEKAQAE--RLLRElADNRLTTVAEKSRVL 507
Cdd:COG2268 291 EIELQEKEAEREEAE-----LEADVRKPAEAEKQAAEAEAE-AEAEAIRAKGLAEAEgkRALAE-AWNKLGDAAILLMLI 363
|
....*.
gi 1907163864 508 QLEEEL 513
Cdd:COG2268 364 EKLPEI 369
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
341-524 |
2.88e-04 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 44.03 E-value: 2.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 341 LTETSSRYARKISGTTALQEALKEKQQhieqlLAERDLE--RAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEkLQRA 418
Cdd:pfam15905 161 LMKLRNKLEAKMKEVMAKQEGMEGKLQ-----VTQKNLEhsKGKVAQLEEKLVSTEKEKIEEKSETEKLLEYITE-LSCV 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 419 RLLVENVRKEKVDLSNQLEEERRKVEDLQFRVEEEsitKGDLETQTQLEHARIGELEQSLllekaqaERLLRELADNRLT 498
Cdd:pfam15905 235 SEQVEKYKLDIAQLEELLKEKNDEIESLKQSLEEK---EQELSKQIKDLNEKCKLLESEK-------EELLREYEEKEQT 304
|
170 180
....*....|....*....|....*.
gi 1907163864 499 TVAEksrVLQLEEELSLRRGEIEELQ 524
Cdd:pfam15905 305 LNAE---LEELKEKLTLEEQEHQKLQ 327
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
481-796 |
3.31e-04 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 43.76 E-value: 3.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 481 EKAQaerlLRELaDNRLTTVAEKSRvlQLEEELSLRRGEIEELQHcllQSGPPPADHPEAAE-TLR-LRERLLSASKEHQ 558
Cdd:pfam00038 2 EKEQ----LQEL-NDRLASYIDKVR--FLEQQNKLLETKISELRQ---KKGAEPSRLYSLYEkEIEdLRRQLDTLTVERA 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 559 R---DSTLLQDKYEHMLKTYQTEVDKLRAANEkyaqEVADLKAKVQQATTENMGLmdnwKSKLDSLasdhqksledlkat 635
Cdd:pfam00038 72 RlqlELDNLRLAAEDFRQKYEDELNLRTSAEN----DLVGLRKDLDEATLARVDL----EAKIESL-------------- 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 636 lnsgpgaqQKEIGELKalvegikMEHQLELGNLQAKHDLETA---MHGKEKEGLRQKLQEVQEELAGLQQHWREQLEEQA 712
Cdd:pfam00038 130 --------KEELAFLK-------KNHEEEVRELQAQVSDTQVnveMDAARKLDLTSALAEIRAQYEEIAAKNREEAEEWY 194
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 713 SQHRLELQEAQDQCRDAqLRAQELEGLdvEYRGQAQAIEFLKEQIslaeKKMLDYEMLQRAEAQSRQEAER--LREKLLV 790
Cdd:pfam00038 195 QSKLEELQQAAARNGDA-LRSAKEEIT--ELRRTIQSLEIELQSL----KKQKASLERQLAETEERYELQLadYQELISE 267
|
....*.
gi 1907163864 791 AENRLQ 796
Cdd:pfam00038 268 LEAELQ 273
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
367-522 |
3.57e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.99 E-value: 3.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 367 QHIEQL--LAERDLERAEVAKAtshICEVEKEIALLKAQheqyVAEAEEKLQRARLLVENVRKEKVDLSNQLEEERRKVE 444
Cdd:COG1579 4 EDLRALldLQELDSELDRLEHR---LKELPAELAELEDE----LAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 445 DLQFRVEEESITK--GDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEELSLRRGEIEE 522
Cdd:COG1579 77 KYEEQLGNVRNNKeyEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEA 156
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
406-638 |
3.96e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 3.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 406 QYVAEAEEKLQRARLLVENVrKEKVDLSNQLEEERRKVEDLQ------FRVEEESITKGDLETQtqLEHARIGELEQSLL 479
Cdd:COG4913 215 EYMLEEPDTFEAADALVEHF-DDLERAHEALEDAREQIELLEpirelaERYAAARERLAELEYL--RAALRLWFAQRRLE 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 480 LEKAQAERLLRELADNrlttvaeKSRVLQLEEELSLRRGEIEELQHCLLQSGpppadhpeaAETLRLRERLLSASKEHQR 559
Cdd:COG4913 292 LLEAELEELRAELARL-------EAELERLEARLDALREELDELEAQIRGNG---------GDRLEQLEREIERLERELE 355
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907163864 560 DSTLLQDKYEHMLKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTENMGLMDNWKSKLdslaSDHQKSLEDLKATLNS 638
Cdd:COG4913 356 ERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAAL----RDLRRELRELEAEIAS 430
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
349-559 |
6.30e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.57 E-value: 6.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 349 ARKISGTTALQEALKEKQQHIEQLLAErdLERAEVAKATSHicEVEKEIALLKAQHEQYVAEAEEKLQRARLLVENVRKE 428
Cdd:pfam17380 371 AMEISRMRELERLQMERQQKNERVRQE--LEAARKVKILEE--ERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAR 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 429 KVDLSNQLEEERR-KVEDLqfRVEEESITKGDLETQTQLEHARIGELEQSLLLEKaqaerllrELADNRLTTVAEKSRVL 507
Cdd:pfam17380 447 EMERVRLEEQERQqQVERL--RQQEEERKRKKLELEKEKRDRKRAEEQRRKILEK--------ELEERKQAMIEEERKRK 516
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1907163864 508 QLEEELSLRRGEIEELQHcLLQSGPPPADHPEAAETLRLRERLLSASKEHQR 559
Cdd:pfam17380 517 LLEKEMEERQKAIYEEER-RREAEEERRKQQEMEERRRIQEQMRKATEERSR 567
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
642-794 |
7.75e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 7.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 642 AQQKEIGELKALVEGIKMEH-QLELGNLQAKHDLETAMHGK---EKEGLRQKLQEVQEELAGLQQHWR-------EQLEE 710
Cdd:COG4913 266 AARERLAELEYLRAALRLWFaQRRLELLEAELEELRAELARleaELERLEARLDALREELDELEAQIRgnggdrlEQLER 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 711 QASQHRLELQEAQDQCRDAQLRAQELeGLDVEY------RGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERL 784
Cdd:COG4913 346 EIERLERELEERERRRARLEALLAAL-GLPLPAsaeefaALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELREL 424
|
170
....*....|
gi 1907163864 785 REKLLVAENR 794
Cdd:COG4913 425 EAEIASLERR 434
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
334-523 |
7.88e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.39 E-value: 7.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 334 RPSRSGLLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVE---KEIALLKAQHEQYVAE 410
Cdd:COG1196 583 RARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAgrlREVTLEGEGGSAGGSL 662
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 411 AEEKLQRARLLVENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLR 490
Cdd:COG1196 663 TGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELL 742
|
170 180 190
....*....|....*....|....*....|....*..
gi 1907163864 491 ELADNRLTTVAEKSRVL----QLEEELSLRRGEIEEL 523
Cdd:COG1196 743 EEEELLEEEALEELPEPpdleELERELERLEREIEAL 779
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
406-793 |
8.90e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.89 E-value: 8.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 406 QYVAEAEEKLQRARLLVENVRKEKVDLS------NQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLL 479
Cdd:pfam10174 185 RRIAEAEMQLGHLEVLLDQKEKENIHLReelhrrNQLQPDPAKTKALQTVIEMKDTKISSLERNIRDLEDEVQMLKTNGL 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 480 LEKAQAERLLRELADNRLTTVAEKSRVLQLEEELSLRRGEIEELQHCLLQSGPPPADHPEAAETLRlrERLlsASKEhQR 559
Cdd:pfam10174 265 LHTEDREEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLK--ESL--TAKE-QR 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 560 DSTLlqdkyehmlktyQTEVDKLRAANE----------KYAQEVADLKAKVQQATTENMGLMDNWKSKLDSLasdhQKSL 629
Cdd:pfam10174 340 AAIL------------QTEVDALRLRLEekesflnkktKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVL----QKKI 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 630 EDLKATLNSgpgaQQKEIGELKALVEGIK------------MEHQLE-----LGNLQAKHDLETAMHGKEKEGLRQKLQE 692
Cdd:pfam10174 404 ENLQEQLRD----KDKQLAGLKERVKSLQtdssntdtalttLEEALSekeriIERLKEQREREDRERLEELESLKKENKD 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 693 VQEELAGLQQHWREQ------LEEQAS--------------QHRLELQEAQDQCRDAQ---LRAQELEgldveyrGQAQA 749
Cdd:pfam10174 480 LKEKVSALQPELTEKesslidLKEHASslassglkkdsklkSLEIAVEQKKEECSKLEnqlKKAHNAE-------EAVRT 552
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 1907163864 750 IEFLKEQISLAEKKMLDYemlqRAEAQSRQ-EAERLREKLLVAEN 793
Cdd:pfam10174 553 NPEINDRIRLLEQEVARY----KEESGKAQaEVERLLGILREVEN 593
|
|
| HAP1_N |
pfam04849 |
HAP1 N-terminal conserved region; This family represents an N-terminal conserved region found ... |
449-727 |
9.69e-04 |
|
HAP1 N-terminal conserved region; This family represents an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologs. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntington's disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34.
Pssm-ID: 461455 [Multi-domain] Cd Length: 309 Bit Score: 42.32 E-value: 9.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 449 RVEEESITKGDLETQTQLEH---------ARIGeleQSLLlekaQAERLLREladnrlttvaeksRVLQLEEELSLRRGE 519
Cdd:pfam04849 57 RVSQMTKTYNDIEAVTRLLEekerdlelaARIG---QSLL----KQNSVLTE-------------RNEALEEQLGSAREE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 520 IEELQHC------LLQ--SGPPPADHPEAAETLRLRERLLSASKEHQRDSTLLQDKyehmLKTYQTEVDKLRAANEKYAQ 591
Cdd:pfam04849 117 ILQLRHElskkddLLQiySNDAEESETESSCSTPLRRNESFSSLHGCVQLDALQEK----LRGLEEENLKLRSEASHLKT 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 592 EVADLKAKVQQattenmgLMDNWKSKLdSLASDHQKSLEDLKATLNSGPGAQQKEIGELKALVegIKMEHQLElgnlqak 671
Cdd:pfam04849 193 ETDTYEEKEQQ-------LMSDCVEQL-SEANQQMAELSEELARKMEENLRQQEEITSLLAQI--VDLQHKCK------- 255
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907163864 672 hdletaMHGKEKEGLRQKLQ-------EVQEELAGLQQHWREQLEeqasqhrlELQEAQDQCR 727
Cdd:pfam04849 256 ------ELGIENEELQQHLQaskeaqrQLTSELQELQDRYAECLG--------MLHEAQEELK 304
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
399-767 |
1.23e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.19 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 399 LLKAQHEQYVAEAEEKLQRARLLVENVRKEKVDLSNQLEEERRKVEDLQFRVEEesitkgdLETQTQLEHARIGELEQSL 478
Cdd:pfam07888 31 LLQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAE-------LKEELRQSREKHEELEEKY 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 479 LLEKAQAERLLRELADNRLTTVAEKSRVLQLEEE---LSLRRGEIEelqhcllqsgpppadhpeaAETLRLRER---LLS 552
Cdd:pfam07888 104 KELSASSEELSEEKDALLAQRAAHEARIRELEEDiktLTQRVLERE-------------------TELERMKERakkAGA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 553 ASKEHQRDSTLLQDKY---EHMLKTYQTEVDKLRAANEKYAQEVADLKAKV----------QQATTENMGLMDNWKSKLD 619
Cdd:pfam07888 165 QRKEEEAERKQLQAKLqqtEEELRSLSKEFQELRNSLAQRDTQVLQLQDTIttltqklttaHRKEAENEALLEELRSLQE 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 620 SLASDHQKSlEDLKATLNSGPGAQQKEIGEL-KALVEGIKMEHQLELGNLQAKHDleTAMHGKEKEGLRQKLQEVQEELA 698
Cdd:pfam07888 245 RLNASERKV-EGLGEELSSMAAQRDRTQAELhQARLQAAQLTLQLADASLALREG--RARWAQERETLQQSAEADKDRIE 321
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907163864 699 GLQ---QHWREQLEEQASQH-RLELQEAQDQ-CRDAQLRAQELEglDVEYRGQAQAIEFLKEQISLAEKKMLDY 767
Cdd:pfam07888 322 KLSaelQRLEERLQEERMEReKLEVELGREKdCNRVQLSESRRE--LQELKASLRVAQKEKEQLQAEKQELLEY 393
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
545-778 |
1.33e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 1.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 545 RLRERLLSASKEHQRDSTLLQDKyehmLKTYQTEVDKLRAANEKYAQEVADLKaKVQQATTENMGLMDNWKSKLDSL--- 621
Cdd:COG4717 50 RLEKEADELFKPQGRKPELNLKE----LKELEEELKEAEEKEEEYAELQEELE-ELEEELEELEAELEELREELEKLekl 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 622 --ASDHQKSLEDLKATLNSGPGaqqkeigELKALVEGIKMEHQLElgnlqakhdletamhgKEKEGLRQKLQEVQEELAG 699
Cdd:COG4717 125 lqLLPLYQELEALEAELAELPE-------RLEELEERLEELRELE----------------EELEELEAELAELQEELEE 181
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907163864 700 LQQHWREQLEEQASQHRLELQEAQDQCRDAQLRAQELEgldveyrgqaQAIEFLKEQISLAEKKMLDYEMLQRAEAQSR 778
Cdd:COG4717 182 LLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQ----------EELEELEEELEQLENELEAAALEERLKEARL 250
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
687-799 |
1.56e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 42.25 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 687 RQKLQEVQEELAGLqqhwREQLEEQASqhrlELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEflkeqislaekkmLD 766
Cdd:PRK11448 141 ENLLHALQQEVLTL----KQQLELQAR----EKAQSQALAEAQQQELVALEGLAAELEEKQQELE-------------AQ 199
|
90 100 110
....*....|....*....|....*....|....
gi 1907163864 767 YEMLQ-RAEAQSRQEAERLREKLLVAENRLQAAE 799
Cdd:PRK11448 200 LEQLQeKAAETSQERKQKRKEITDQAAKRLELSE 233
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
686-842 |
1.59e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 41.57 E-value: 1.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 686 LRQKLQEVQEELAGLqqhwreqleeQASQHRLELQEAQDQcRDAQLRAQelegldveyrgqaqaIEFLKEQISLAEKKML 765
Cdd:COG1566 81 LQAALAQAEAQLAAA----------EAQLARLEAELGAEA-EIAAAEAQ---------------LAAAQAQLDLAQRELE 134
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907163864 766 DYEMLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSAQHSHVIESSDLSEETIRMKETVEGL-QDKLNKRDKEVTA 842
Cdd:COG1566 135 RYQALYKKGAVSQQELDEARAALDAAQAQLEAAQAQLAQAQAGLREEEELAAAQAQVAQAEAALaQAELNLARTTIRA 212
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
350-631 |
1.76e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 41.87 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 350 RKISGTTALQEALKEKQQHIEQLLAERdlERAEVAKATShicEVEKEIALLKAQHEQYVAEAEEKLQRARLLVENVRKEk 429
Cdd:COG5185 296 EKIAEYTKSIDIKKATESLEEQLAAAE--AEQELEESKR---ETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGE- 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 430 vdlsNQLEEERRKVEDLQFRVeEESITKGDLETQTQLEHARIGE--LEQSLLLEKAQAERLLRELADNRLTTVAEKSRVL 507
Cdd:COG5185 370 ----VELSKSSEELDSFKDTI-ESTKESLDEIPQNQRGYAQEILatLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLN 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 508 QLEEELSLRRGEIEELQHCLLQSgpppadhPEAAETLRLRERLLSASKEHQRdstlLQDKYEHMLKTYQTEVDKLRAANE 587
Cdd:COG5185 445 ELISELNKVMREADEESQSRLEE-------AYDEINRSVRSKKEDLNEELTQ----IESRVSTLKATLEKLRAKLERQLE 513
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1907163864 588 KYAQEVADLKAKVQQATTENMGLMDNWKSKLDSLASDHQKSLED 631
Cdd:COG5185 514 GVRSKLDQVAESLKDFMRARGYAHILALENLIPASELIQASNAK 557
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
658-838 |
2.41e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 41.65 E-value: 2.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 658 KMEHQLELGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLQQHWREQLEEQASQ---HRLELQEAQDQCRDAQLRAQ 734
Cdd:pfam05557 70 ALREQAELNRLKKKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELElqsTNSELEELQERLDLLKAKAS 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 735 ELEGLDVEYRGQAQAIEFLKEQIslaekKMLDYEMLQraEAQSRQEAERLREKLLvaenRLQAAESLCSAQHSHVIESSD 814
Cdd:pfam05557 150 EAEQLRQNLEKQQSSLAEAEQRI-----KELEFEIQS--QEQDSEIVKNSKSELA----RIPELEKELERLREHNKHLNE 218
|
170 180
....*....|....*....|....
gi 1907163864 815 LSEETIRMKETVEGLQDKLNKRDK 838
Cdd:pfam05557 219 NIENKLLLKEEVEDLKRKLEREEK 242
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
369-510 |
2.45e-03 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 40.90 E-value: 2.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 369 IEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRA--RLLVENVRKEKVD--LSNQLEEERRKVE 444
Cdd:pfam09787 49 LEELRQERDLLREEIQKLRGQIQQLRTELQELEAQQQEEAESSREQLQELeeQLATERSARREAEaeLERLQEELRYLEE 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 445 DL---------QFRVEEESITKGDLE---------TQTQLEhARIGELEQSLLLEKAQAERLLREladnrlttvaEKSRV 506
Cdd:pfam09787 129 ELrrskatlqsRIKDREAEIEKLRNQltsksqsssSQSELE-NRLHQLTETLIQKQTMLEALSTE----------KNSLV 197
|
....
gi 1907163864 507 LQLE 510
Cdd:pfam09787 198 LQLE 201
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
347-512 |
2.84e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 2.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 347 RYARKISGTTALQEALKEKQQHIEQllAERDLERAEVAKatshICEVEKEIALLKAQHEQYVAEAEEKLQRarlLVENVR 426
Cdd:PRK12704 22 YFVRKKIAEAKIKEAEEEAKRILEE--AKKEAEAIKKEA----LLEAKEEIHKLRNEFEKELRERRNELQK---LEKRLL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 427 KEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQ----LEHARIGELEQSLLLEKAQA-ERLLRELADNrltTVA 501
Cdd:PRK12704 93 QKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEeleeLIEEQLQELERISGLTAEEAkEILLEKVEEE---ARH 169
|
170
....*....|.
gi 1907163864 502 EKSRVLQLEEE 512
Cdd:PRK12704 170 EAAVLIKEIEE 180
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
356-696 |
2.97e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.16 E-value: 2.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 356 TALQEALKEKQQHIEQLLAErdleraEVAKATSHICEVEKEIAllkaQHEQYVAEAEEKLQRARLLVENVRKEKVDLSNQ 435
Cdd:TIGR04523 295 SEISDLNNQKEQDWNKELKS------ELKNQEKKLEEIQNQIS----QNNKIISQLNEQISQLKKELTNSESENSEKQRE 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 436 LEEERRKVEDLQFRVEE--ESIT-----KGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQ 508
Cdd:TIGR04523 365 LEEKQNEIEKLKKENQSykQEIKnlesqINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKD 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 509 LEEELSLRRGEIEELQhcllqsgpppadhpeaAETLRLRERLLSASKEHQRDSTLLQDKyEHMLKTYQTEVDKLRAANEK 588
Cdd:TIGR04523 445 LTNQDSVKELIIKNLD----------------NTRESLETQLKVLSRSINKIKQNLEQK-QKELKSKEKELKKLNEEKKE 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 589 YAQEVADLKAKVQQaTTENMGLMDNWKSKLDSLASDHQKSLEDLKATLNSGP-----GAQQKEIGELKALVEGIKM---E 660
Cdd:TIGR04523 508 LEEKVKDLTKKISS-LKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENlekeiDEKNKEIEELKQTQKSLKKkqeE 586
|
330 340 350
....*....|....*....|....*....|....*....
gi 1907163864 661 HQLELGNLQA-KHDL--ETAMHGKEKEGLRQKLQEVQEE 696
Cdd:TIGR04523 587 KQELIDQKEKeKKDLikEIEEKEKKISSLEKELEKAKKE 625
|
|
| TTKRSYEDQ |
pfam10212 |
Predicted coiled-coil domain-containing protein; This is the C-terminal 500 amino acids of a ... |
683-850 |
3.56e-03 |
|
Predicted coiled-coil domain-containing protein; This is the C-terminal 500 amino acids of a family of proteins with a predicted coiled-coil domain conserved from nematodes to humans. It carries a characteriztic TTKRSYEDQ sequence-motif. The function is not known.
Pssm-ID: 463001 Cd Length: 523 Bit Score: 40.96 E-value: 3.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 683 KEGLRQKLQEVQEELAGLQQ---HWreQLEEQASQHRLELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEFLKEQISL 759
Cdd:pfam10212 304 REGLAQQVQQSQEKIAKLEQekeHW--MLEAQLLKIKLEKENQRIADLEKQLLKGSTSGQLPELVQSKATLPLTAKQGSE 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 760 AEKKMLDY--------EMLQRAEAQSRQEAERLREKLL-------VAE--NRLQAAESlcSAQHSH-----------VIE 811
Cdd:pfam10212 382 ASSISEKEptpstsliGMLTVTTDSEESSDEESREQLIkshymarIAEltSQLQLADS--KAVHFHaecralakrlaLAE 459
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1907163864 812 SS--DLSEETIRMKETVEGLQDKL--NKRDKEvtaltSQMDML 850
Cdd:pfam10212 460 KSkeSLTEELKLANQNISRLQDELttTKRSYE-----DQLSMM 497
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
587-788 |
3.68e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 3.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 587 EKYAQEVADLKAKVQQATTENMGLMDNWKSKLDSLASDHQ--KSLEDLKATLNSGPGAQQKEIGELKALVEGIKMEHQLe 664
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEeyAELQEELEELEEELEELEAELEELREELEKLEKLLQL- 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 665 LGNLQAKHDLETAMHGKEK--EGLRQKLQEVQEelaglQQHWREQLEEQASQHRLELQEAQDQCRDAQLraQELEGLDVE 742
Cdd:COG4717 128 LPLYQELEALEAELAELPErlEELEERLEELRE-----LEEELEELEAELAELQEELEELLEQLSLATE--EELQDLAEE 200
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1907163864 743 YRGQAQAIEFLKEQISLAEKKMLDYEmLQRAEAQSRQEAERLREKL 788
Cdd:COG4717 201 LEELQQRLAELEEELEEAQEELEELE-EELEQLENELEAAALEERL 245
|
|
| CENP-F_leu_zip |
pfam10473 |
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, ... |
363-513 |
4.67e-03 |
|
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance.
Pssm-ID: 463102 [Multi-domain] Cd Length: 140 Bit Score: 38.43 E-value: 4.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 363 KEKQQHIEQLLAERdleRAEVAKATSHICEVEKEIALLkaqheqyvaeaEEKLQRARLLVENVRKEKVDLSNQLEEERRK 442
Cdd:pfam10473 2 EKKQLHVLEKLKES---ERKADSLKDKVENLERELEMS-----------EENQELAILEAENSKAEVETLKAEIEEMAQN 67
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907163864 443 VEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLlekaQAERLLRELADNRLTTVAE-KSRVLQLEEEL 513
Cdd:pfam10473 68 LRDLELDLVTLRSEKENLTKELQKKQERVSELESLNS----SLENLLEEKEQEKVQMKEEsKTAVEMLQTQL 135
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
486-854 |
5.61e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 40.58 E-value: 5.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 486 ERLLRELADNRLTTVAEKSRVLQ------------LEEELSLRRGEIEELQHCLLQSGPPPADHPEAAETLRLRERLLSA 553
Cdd:pfam10174 44 ERALRKEEAARISVLKEQYRVTQeenqhlqltiqaLQDELRAQRDLNQLLQQDFTTSPVDGEDKFSTPELTEENFRRLQS 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 554 SKEHQ-RDSTLLQDKYEHMLKTYQTEVDKLRAANEKYAQEVADLKAKVQ--------QATTENMGLMDNWKSKLDSLASD 624
Cdd:pfam10174 124 EHERQaKELFLLRKTLEEMELRIETQKQTLGARDESIKKLLEMLQSKGLpkksgeedWERTRRIAEAEMQLGHLEVLLDQ 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 625 HQKSLEDLKATLNSGPGAQQkEIGELKALVEGIKME-----------HQLELGNLQAKHDLETAMHGKEKEglrQKLQEV 693
Cdd:pfam10174 204 KEKENIHLREELHRRNQLQP-DPAKTKALQTVIEMKdtkisslerniRDLEDEVQMLKTNGLLHTEDREEE---IKQMEV 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 694 QEELAGLQQHWREQLEEQASQHRLELQEAQDQcrdaqlraqeLEGLDVEYRGQAQAIEFLKEqiSLAEKKmldyemlQRA 773
Cdd:pfam10174 280 YKSHSKFMKNKIDQLKQELSKKESELLALQTK----------LETLTNQNSDCKQHIEVLKE--SLTAKE-------QRA 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 774 EA-QSRQEAERLR----EKLLVAEN----RLQAAESLCSAQHSHVIESSDLSEETIR-MKETVEGLQDKLNKRDKEVTAL 843
Cdd:pfam10174 341 AIlQTEVDALRLRleekESFLNKKTkqlqDLTEEKSTLAGEIRDLKDMLDVKERKINvLQKKIENLQEQLRDKDKQLAGL 420
|
410
....*....|.
gi 1907163864 844 TSQMDMLRAQS 854
Cdd:pfam10174 421 KERVKSLQTDS 431
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
392-513 |
5.95e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.45 E-value: 5.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 392 EVEKEIALLKAQHEQYVAEAE----EKLQRARLLVENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLEtqtQLE 467
Cdd:COG0542 415 ELERRLEQLEIEKEALKKEQDeasfERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQRYGKIP---ELE 491
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907163864 468 hARIGELEQSLllekAQAERLLRELAD----------------NRLTTvAEKSRVLQLEEEL 513
Cdd:COG0542 492 -KELAELEEEL----AELAPLLREEVTeediaevvsrwtgipvGKLLE-GEREKLLNLEEEL 547
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
587-830 |
6.68e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 40.28 E-value: 6.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 587 EKYAQEVADLKAKVQQA---TTENMGLMDNWKSKLDS-LASDHQK-SLEDLKATLNSGPGAQ---QKEIGELKALVegIK 658
Cdd:PRK11281 76 DRQKEETEQLKQQLAQApakLRQAQAELEALKDDNDEeTRETLSTlSLRQLESRLAQTLDQLqnaQNDLAEYNSQL--VS 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 659 MEHQLElgnlQAKHDLETAMhgKEKEGLRQKLQEVQEELAGLQQHWREQLeeQASQHRLELQEAQDQcrdaqlraQELEG 738
Cdd:PRK11281 154 LQTQPE----RAQAALYANS--QRLQQIRNLLKGGKVGGKALRPSQRVLL--QAEQALLNAQNDLQR--------KSLEG 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 739 LDV-EYRGQAQaIEFLKEQISLAEK-----------KMLDYEMLQRAEAQSRQEAERlrekllVAENRLQAAESLCSAQH 806
Cdd:PRK11281 218 NTQlQDLLQKQ-RDYLTARIQRLEHqlqllqeainsKRLTLSEKTVQEAQSQDEAAR------IQANPLVAQELEINLQL 290
|
250 260
....*....|....*....|....*....
gi 1907163864 807 S-HVIESSD----LSEETIRMKETVEGLQ 830
Cdd:PRK11281 291 SqRLLKATEklntLTQQNLRVKNWLDRLT 319
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
431-798 |
7.19e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.33 E-value: 7.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 431 DLSNQLEEERRKVEDLQFRVEEesitkgdleTQTQLEH-----------ARIGELEQSLLLEKAQAERLLRELADNRLTT 499
Cdd:PRK04863 790 QLRAEREELAERYATLSFDVQK---------LQRLHQAfsrfigshlavAFEADPEAELRQLNRRRVELERALADHESQE 860
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 500 VAEKSRVLQLEEELSLrrgeieeLQHCLLQSGP-PPADHPEAAETLRLRerlLSASKEHQRDStllqDKYEHMLKTYQTE 578
Cdd:PRK04863 861 QQQRSQLEQAKEGLSA-------LNRLLPRLNLlADETLADRVEEIREQ---LDEAEEAKRFV----QQHGNALAQLEPI 926
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 579 VDKLRAANEKYAQevadLKAKVQQATTEnmglMDNWKSKLDSLASDHQK----SLEDLKATLNSGPGAQQKEIGELKALv 654
Cdd:PRK04863 927 VSVLQSDPEQFEQ----LKQDYQQAQQT----QRDAKQQAFALTEVVQRrahfSYEDAAEMLAKNSDLNEKLRQRLEQA- 997
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 655 EGIKMEHQLELGNLQAKHDLETAMHGKEK---EGLRQKLQEVQEELAGLQQHWREQLEEQASQHRLELQEAQDQCR---- 727
Cdd:PRK04863 998 EQERTRAREQLRQAQAQLAQYNQVLASLKssyDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHARLSANRsrrn 1077
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 728 --DAQLRAQELE---------GLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQ--SRQEAERLREKLLVAENR 794
Cdd:PRK04863 1078 qlEKQLTFCEAEmdnltkklrKLERDYHEMREQVVNAKAGWCAVLRLVKDNGVERRLHRRelAYLSADELRSMSDKALGA 1157
|
....
gi 1907163864 795 LQAA 798
Cdd:PRK04863 1158 LRLA 1161
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
408-524 |
7.30e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 39.84 E-value: 7.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 408 VAEAEEKLQRARLLVEN--VRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQA 485
Cdd:COG2433 378 IEEALEELIEKELPEEEpeAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEE 457
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1907163864 486 ERLLRELAD-NRLttvaeKSRVLQLEEELSLRRGEIEELQ 524
Cdd:COG2433 458 RREIRKDREiSRL-----DREIERLERELEEERERIEELK 492
|
|
| DUF4200 |
pfam13863 |
Domain of unknown function (DUF4200); This family is found in eukaryotes. It is a coiled-coil ... |
358-452 |
7.93e-03 |
|
Domain of unknown function (DUF4200); This family is found in eukaryotes. It is a coiled-coil domain of unknwon function.
Pssm-ID: 464003 [Multi-domain] Cd Length: 119 Bit Score: 37.16 E-value: 7.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 358 LQEALKEKQQHIEQLLAERDLERAEVAKAtshicevEKEIALLKAQHEQYVAEAEEKLQRARLLVENVRKEKVDLSNQLE 437
Cdd:pfam13863 11 VQLALDAKREEIERLEELLKQREEELEKK-------EQELKEDLIKFDKFLKENDAKRRRALKKAEEETKLKKEKEKEIK 83
|
90
....*....|....*
gi 1907163864 438 EERRKVEDLQFRVEE 452
Cdd:pfam13863 84 KLTAQIEELKSEISK 98
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
417-846 |
8.10e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 39.94 E-value: 8.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 417 RARLLVEN--VRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQT--------QLEHARIGELEQSLLLEKAQAE 486
Cdd:PRK04863 218 RDYLLPENsgVRKAFQDMEAALRENRMTLEAIRVTQSDRDLFKHLITESTnyvaadymRHANERRVHLEEALELRRELYT 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 487 -RLLRELADNRLTTVAEKsrvlqlEEELSLRRGEIEelqhcllqsgpppADHPEAAETLRLRERLLSASKEHQRdstllq 565
Cdd:PRK04863 298 sRRQLAAEQYRLVEMARE------LAELNEAESDLE-------------QDYQAASDHLNLVQTALRQQEKIER------ 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 566 dkyehmlktYQTEVDKLRAANEKYAQ-------EVADLKAKVQQATTEnmglMDNWKSKLdslaSDHQKSLEdlkatlns 638
Cdd:PRK04863 353 ---------YQADLEELEERLEEQNEvveeadeQQEENEARAEAAEEE----VDELKSQL----ADYQQALD-------- 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 639 gpgAQQKEIGE----LKAL--VEGIKMEHQLELGNLQAKHdletamhgkekEGLRQKLQEVQEELAGLQQHWREQlEEQA 712
Cdd:PRK04863 408 ---VQQTRAIQyqqaVQALerAKQLCGLPDLTADNAEDWL-----------EEFQAKEQEATEELLSLEQKLSVA-QAAH 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 713 SQHRlelQEAQDQCR--------DAQLRAQELEGLDVEYRGQAQAIEFLKEQISlaekkmldyEMLQRAEAQSRQEaERL 784
Cdd:PRK04863 473 SQFE---QAYQLVRKiagevsrsEAWDVARELLRRLREQRHLAEQLQQLRMRLS---------ELEQRLRQQQRAE-RLL 539
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907163864 785 REKLLVAENRLQAAESLCSAQHSHVIESSDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQ 846
Cdd:PRK04863 540 AEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAAR 601
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
407-758 |
8.24e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 39.94 E-value: 8.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 407 YVAEAEEklqRARLLVE--NVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIgeleQSLLLEKAQ 484
Cdd:PRK04863 274 YMRHANE---RRVHLEEalELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHL----NLVQTALRQ 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 485 AERLLRELAD-NRLTTVAEKS---------RVLQLEEELSLRRGEIEELQHCLlqsgpppADHPEAAETLRLRE------ 548
Cdd:PRK04863 347 QEKIERYQADlEELEERLEEQnevveeadeQQEENEARAEAAEEEVDELKSQL-------ADYQQALDVQQTRAiqyqqa 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 549 -RLLSASKEHQRDSTLLQDKYEHMLKTYQTEVD-----------KLR---AANEKYAQ--------------EVADLKAK 599
Cdd:PRK04863 420 vQALERAKQLCGLPDLTADNAEDWLEEFQAKEQeateellsleqKLSvaqAAHSQFEQayqlvrkiagevsrSEAWDVAR 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 600 V-------QQATTENMGlmdNWKSKLDSLASDH--QKSLEDLKATLNSGPGAQQKEIGELKALVEgikmehqlELGNLQA 670
Cdd:PRK04863 500 EllrrlreQRHLAEQLQ---QLRMRLSELEQRLrqQQRAERLLAEFCKRLGKNLDDEDELEQLQE--------ELEARLE 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 671 KHDLETAMHGKEKEGLRQKLQEVQEELAGLQQHWREQLEEQASQHRLelqeaQDQCRDAQLRAQELEG-----------L 739
Cdd:PRK04863 569 SLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARL-----REQSGEEFEDSQDVTEymqqllerereL 643
|
410
....*....|....*....
gi 1907163864 740 DVEYRGQAQAIEFLKEQIS 758
Cdd:PRK04863 644 TVERDELAARKQALDEEIE 662
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
365-703 |
8.54e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 39.88 E-value: 8.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 365 KQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEA------EEKLQRARLLVENVRKekvdlsnQLEE 438
Cdd:PRK01156 136 GQGEMDSLISGDPAQRKKILDEILEINSLERNYDKLKDVIDMLRAEIsnidylEEKLKSSNLELENIKK-------QIAD 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 439 ERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELeQSLLLEKAQAERLLRElADNRlttvaeksrvLQLEEELSLRRG 518
Cdd:PRK01156 209 DEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNEL-SSLEDMKNRYESEIKT-AESD----------LSMELEKNNYYK 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 519 EIEElQHCLLQSGPPPADHPEAAETLRLRERLLSASKEHQRDSTLLQdKYEHMLKTYQtEVDKLRAANEKYAQEVADLKA 598
Cdd:PRK01156 277 ELEE-RHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEIN-KYHAIIKKLS-VLQKDYNDYIKKKSRYDDLNN 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 599 KVQQATTENM---GLMDNWKSKlDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKALVEGIK---MEHQLELGNLQAKh 672
Cdd:PRK01156 354 QILELEGYEMdynSYLKSIESL-KKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINvklQDISSKVSSLNQR- 431
|
330 340 350
....*....|....*....|....*....|.
gi 1907163864 673 dletamhgkeKEGLRQKLQEVQEELAGLQQH 703
Cdd:PRK01156 432 ----------IRALRENLDELSRNMEMLNGQ 452
|
|
| |
