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Conserved domains on  [gi|1907163864|ref|XP_036021051|]
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CAP-Gly domain-containing linker protein 2 isoform X1 [Mus musculus]

Protein Classification

CAP-Gly domain-containing linker protein( domain architecture ID 13651955)

CAP-Gly domain-containing linker protein similar to mammalian CLIP-170 and CLIP-115, which are homodimers and act as general promoters of microtubule growth

Gene Ontology:  GO:0031122|GO:0008017
PubMed:  15928712

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CAP_GLY pfam01302
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ...
222-286 2.35e-35

CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


:

Pssm-ID: 460154 [Multi-domain]  Cd Length: 65  Bit Score: 127.90  E-value: 2.35e-35
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907163864 222 LGDRVLVGGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKV 286
Cdd:pfam01302   1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
CAP_GLY pfam01302
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ...
82-146 5.23e-31

CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


:

Pssm-ID: 460154 [Multi-domain]  Cd Length: 65  Bit Score: 115.58  E-value: 5.23e-31
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907163864  82 VGERVWVNGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKL 146
Cdd:pfam01302   1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
357-857 5.88e-17

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 85.76  E-value: 5.88e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 357 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLVEnvrkEKVDLSNQL 436
Cdd:COG1196   243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEE----RRRELEERL 318
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 437 EEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEELSLR 516
Cdd:COG1196   319 EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL 398
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 517 RGEIEELQHcllqsgpppadhpEAAETLRLRERLLSASKEHQRDSTLLQDKyehmLKTYQTEVDKLRAANEKYAQEVADL 596
Cdd:COG1196   399 AAQLEELEE-------------AEEALLERLERLEEELEELEEALAELEEE----EEEEEEALEEAAEEEAELEEEEEAL 461
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 597 KAKVQQATTENMGLMDNWKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKALVEGIKMEHQLELGNLQAkhdLET 676
Cdd:COG1196   462 LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAA---YEA 538
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 677 AMHGKEKEGLRQKLQEVQEELAGLQQHWREQLEEQASQHRLELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEFLKEQ 756
Cdd:COG1196   539 ALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVL 618
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 757 ISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAENRLQAAESlcSAQHSHVIESSDLSEETIRMKETVEGLQDKLNKR 836
Cdd:COG1196   619 GDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSL--TGGSRRELLAALLEAEAELEELAERLAEEELELE 696
                         490       500
                  ....*....|....*....|.
gi 1907163864 837 DKEVTALTSQMDMLRAQSQLS 857
Cdd:COG1196   697 EALLAEEEEERELAEAEEERL 717
 
Name Accession Description Interval E-value
CAP_GLY pfam01302
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ...
222-286 2.35e-35

CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 460154 [Multi-domain]  Cd Length: 65  Bit Score: 127.90  E-value: 2.35e-35
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907163864 222 LGDRVLVGGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKV 286
Cdd:pfam01302   1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
CAP_GLY pfam01302
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ...
82-146 5.23e-31

CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 460154 [Multi-domain]  Cd Length: 65  Bit Score: 115.58  E-value: 5.23e-31
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907163864  82 VGERVWVNGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKL 146
Cdd:pfam01302   1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
CAP_GLY smart01052
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ...
222-286 1.92e-28

Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 214997 [Multi-domain]  Cd Length: 68  Bit Score: 108.44  E-value: 1.92e-28
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907163864  222 LGDRVLVGGT-KTGVVRYVGETDFAKGEWCGVELDEPL-GKNDGAVAGTRYFQCPPKFGLFAPIHKV 286
Cdd:smart01052   1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKV 67
CAP_GLY smart01052
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ...
82-147 1.47e-26

Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 214997 [Multi-domain]  Cd Length: 68  Bit Score: 103.05  E-value: 1.47e-26
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907163864   82 VGERVWVNG-VKPGVVQYLGETQFAPGQWAGVVLDDPV-GKNDGAVGGVRYFECPALQGIFTRPSKLT 147
Cdd:smart01052   1 VGDRVEVGGgGRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
357-857 5.88e-17

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 85.76  E-value: 5.88e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 357 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLVEnvrkEKVDLSNQL 436
Cdd:COG1196   243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEE----RRRELEERL 318
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 437 EEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEELSLR 516
Cdd:COG1196   319 EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL 398
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 517 RGEIEELQHcllqsgpppadhpEAAETLRLRERLLSASKEHQRDSTLLQDKyehmLKTYQTEVDKLRAANEKYAQEVADL 596
Cdd:COG1196   399 AAQLEELEE-------------AEEALLERLERLEEELEELEEALAELEEE----EEEEEEALEEAAEEEAELEEEEEAL 461
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 597 KAKVQQATTENMGLMDNWKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKALVEGIKMEHQLELGNLQAkhdLET 676
Cdd:COG1196   462 LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAA---YEA 538
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 677 AMHGKEKEGLRQKLQEVQEELAGLQQHWREQLEEQASQHRLELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEFLKEQ 756
Cdd:COG1196   539 ALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVL 618
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 757 ISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAENRLQAAESlcSAQHSHVIESSDLSEETIRMKETVEGLQDKLNKR 836
Cdd:COG1196   619 GDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSL--TGGSRRELLAALLEAEAELEELAERLAEEELELE 696
                         490       500
                  ....*....|....*....|.
gi 1907163864 837 DKEVTALTSQMDMLRAQSQLS 857
Cdd:COG1196   697 EALLAEEEEERELAEAEEERL 717
NIP100 COG5244
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ...
82-143 1.17e-14

Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227569 [Multi-domain]  Cd Length: 669  Bit Score: 78.19  E-value: 1.17e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907163864  82 VGERVWVNGVKpGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRP 143
Cdd:COG5244     6 VNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRP 66
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
332-667 4.37e-12

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 70.09  E-value: 4.37e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  332 GGRPSRSGLLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQ---HEQYV 408
Cdd:TIGR02168  663 GGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDlarLEAEV 742
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  409 AEAEEKLQRARLLVENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERL 488
Cdd:TIGR02168  743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  489 LRELADNRLTTVAEKSRVLQLEEELSLRRGEIEELQHCLLQSGPPPADHPEAAetlrlrERLLSASKEHQRDSTLLQDKY 568
Cdd:TIGR02168  823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEL------EALLNERASLEEALALLRSEL 896
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  569 EHM---LKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTENMGLmdnwkskLDSLASDHQKSLEDLKATLNSGPGAQQK 645
Cdd:TIGR02168  897 EELseeLRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNL-------QERLSEEYSLTLEEAEALENKIEDDEEE 969
                          330       340
                   ....*....|....*....|..
gi 1907163864  646 EIGELKALVEGIKmehqlELGN 667
Cdd:TIGR02168  970 ARRRLKRLENKIK-----ELGP 986
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
362-849 8.81e-12

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 69.38  E-value: 8.81e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  362 LKEKQQHIEQLLAERDLE------RAEVAKATSHICEVEKEIALLKA--QHEQYVAEAEEKLQRARLLVENVRKEKVDLS 433
Cdd:pfam15921  262 LQQHQDRIEQLISEHEVEitglteKASSARSQANSIQSQLEIIQEQArnQNSMYMRQLSDLESTVSQLRSELREAKRMYE 341
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  434 NQLEEERRKV-----EDLQFRVEEESITK--GDLETQTQLEHARIGELEQSLLLEKAQAERL-------------LRELA 493
Cdd:pfam15921  342 DKIEELEKQLvlansELTEARTERDQFSQesGNLDDQLQKLLADLHKREKELSLEKEQNKRLwdrdtgnsitidhLRREL 421
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  494 DNRLTTVAEKSRVL---------QLEEELSLRRGEIEELQHCLLQSGPPPADHP---EAAETLRLRERLLSASKEHQRD- 560
Cdd:pfam15921  422 DDRNMEVQRLEALLkamksecqgQMERQMAAIQGKNESLEKVSSLTAQLESTKEmlrKVVEELTAKKMTLESSERTVSDl 501
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  561 STLLQDKyEHMLKTYQTEVDKLRAANEKYAQEVADLKA---------------KVQQA-----------TTENM------ 608
Cdd:pfam15921  502 TASLQEK-ERAIEATNAEITKLRSRVDLKLQELQHLKNegdhlrnvqtecealKLQMAekdkvieilrqQIENMtqlvgq 580
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  609 -----GLMDNWKSKLDSLASDHQKSLEDLKATLNSgpgaQQKEIGELKALVEGIKMEhQLELGN-----LQAKHDL--ET 676
Cdd:pfam15921  581 hgrtaGAMQVEKAQLEKEINDRRLELQEFKILKDK----KDAKIRELEARVSDLELE-KVKLVNagserLRAVKDIkqER 655
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  677 AMHGKEKEGLRQKLQEVQEELAGLQQHWR---EQLEEQASQHRLELQEAQDQCRDAQLRAQELEGLD------------- 740
Cdd:pfam15921  656 DQLLNEVKTSRNELNSLSEDYEVLKRNFRnksEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDghamkvamgmqkq 735
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  741 -VEYRGQAQA----IEFLKEQISLA---------EKKMLDYEMLQRAEAQS---------RQEAERLREKLLVAENRLQA 797
Cdd:pfam15921  736 iTAKRGQIDAlqskIQFLEEAMTNAnkekhflkeEKNKLSQELSTVATEKNkmagelevlRSQERRLKEKVANMEVALDK 815
                          570       580       590       600       610
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1907163864  798 AeSLCSAQHSHVIESSDlsEETIRMKetvegLQDKLNKRDKEVTALTSQMDM 849
Cdd:pfam15921  816 A-SLQFAECQDIIQRQE--QESVRLK-----LQHTLDVKELQGPGYTSNSSM 859
PTZ00121 PTZ00121
MAEBL; Provisional
343-839 7.84e-10

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 62.85  E-value: 7.84e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  343 ETSSRY--ARKISGTTALQEALK--EKQQHIEQLLAERDLERAEVAKaTSHICEVEKEIALLKAQHEQYVAEAEEKlQRA 418
Cdd:PTZ00121  1215 EEARKAedAKKAEAVKKAEEAKKdaEEAKKAEEERNNEEIRKFEEAR-MAHFARRQAAIKAEEARKADELKKAEEK-KKA 1292
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  419 RLLVENVRKEKVDLSNQLEEERRKVEDLQFRVEE------------ESITKGDlETQTQLEHARIGELEQSllLEKAQAE 486
Cdd:PTZ00121  1293 DEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEakkkadaakkkaEEAKKAA-EAAKAEAEAAADEAEAA--EEKAEAA 1369
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  487 RLLRELADNRLTTVAEKSRVLQLEEELSLRRGEIEELQHCLLQSGPPPADHPEA---AETLRLRERLLSASKEhQRDSTL 563
Cdd:PTZ00121  1370 EKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAkkkAEEKKKADEAKKKAEE-AKKADE 1448
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  564 LQDKYEHMLKTYQTEvdklRAANEKYAQEVADLKAKVQQATTENMGLMDNWKSKLDSL--ASDHQKSLEDLKATLNSGPG 641
Cdd:PTZ00121  1449 AKKKAEEAKKAEEAK----KKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAkkAAEAKKKADEAKKAEEAKKA 1524
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  642 AQQKEIGELKALVEGIKMEHQLELGNLQAKHDLETAMHGKEKEglRQKLQEVQEELAGLQQHWREQLEEQASQHRLELQE 721
Cdd:PTZ00121  1525 DEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAE--EAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYE 1602
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  722 AQDQCRDAQLRAQElegldvEYRGQAqaieflkEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKllVAENRLQAAESL 801
Cdd:PTZ00121  1603 EEKKMKAEEAKKAE------EAKIKA-------EELKKAEEEKKKVEQLKKKEAEEKKKAEELKKA--EEENKIKAAEEA 1667
                          490       500       510
                   ....*....|....*....|....*....|....*...
gi 1907163864  802 CSAQhshviESSDLSEETIRMKETVEGLQDKLNKRDKE 839
Cdd:PTZ00121  1668 KKAE-----EDKKKAEEAKKAEEDEKKAAEALKKEAEE 1700
 
Name Accession Description Interval E-value
CAP_GLY pfam01302
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ...
222-286 2.35e-35

CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 460154 [Multi-domain]  Cd Length: 65  Bit Score: 127.90  E-value: 2.35e-35
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907163864 222 LGDRVLVGGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKV 286
Cdd:pfam01302   1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
CAP_GLY pfam01302
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ...
82-146 5.23e-31

CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 460154 [Multi-domain]  Cd Length: 65  Bit Score: 115.58  E-value: 5.23e-31
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907163864  82 VGERVWVNGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKL 146
Cdd:pfam01302   1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
CAP_GLY smart01052
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ...
222-286 1.92e-28

Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 214997 [Multi-domain]  Cd Length: 68  Bit Score: 108.44  E-value: 1.92e-28
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907163864  222 LGDRVLVGGT-KTGVVRYVGETDFAKGEWCGVELDEPL-GKNDGAVAGTRYFQCPPKFGLFAPIHKV 286
Cdd:smart01052   1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKV 67
CAP_GLY smart01052
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ...
82-147 1.47e-26

Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 214997 [Multi-domain]  Cd Length: 68  Bit Score: 103.05  E-value: 1.47e-26
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907163864   82 VGERVWVNG-VKPGVVQYLGETQFAPGQWAGVVLDDPV-GKNDGAVGGVRYFECPALQGIFTRPSKLT 147
Cdd:smart01052   1 VGDRVEVGGgGRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
357-857 5.88e-17

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 85.76  E-value: 5.88e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 357 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLVEnvrkEKVDLSNQL 436
Cdd:COG1196   243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEE----RRRELEERL 318
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 437 EEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEELSLR 516
Cdd:COG1196   319 EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL 398
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 517 RGEIEELQHcllqsgpppadhpEAAETLRLRERLLSASKEHQRDSTLLQDKyehmLKTYQTEVDKLRAANEKYAQEVADL 596
Cdd:COG1196   399 AAQLEELEE-------------AEEALLERLERLEEELEELEEALAELEEE----EEEEEEALEEAAEEEAELEEEEEAL 461
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 597 KAKVQQATTENMGLMDNWKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKALVEGIKMEHQLELGNLQAkhdLET 676
Cdd:COG1196   462 LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAA---YEA 538
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 677 AMHGKEKEGLRQKLQEVQEELAGLQQHWREQLEEQASQHRLELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEFLKEQ 756
Cdd:COG1196   539 ALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVL 618
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 757 ISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAENRLQAAESlcSAQHSHVIESSDLSEETIRMKETVEGLQDKLNKR 836
Cdd:COG1196   619 GDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSL--TGGSRRELLAALLEAEAELEELAERLAEEELELE 696
                         490       500
                  ....*....|....*....|.
gi 1907163864 837 DKEVTALTSQMDMLRAQSQLS 857
Cdd:COG1196   697 EALLAEEEEERELAEAEEERL 717
NIP100 COG5244
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ...
220-853 3.18e-16

Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227569 [Multi-domain]  Cd Length: 669  Bit Score: 83.20  E-value: 3.18e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 220 LHLGDRVLVGGTKtGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFapihkvIRIGFPSTSPAKA 299
Cdd:COG5244     4 LSVNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIF------IRPDDDSLLNGNA 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 300 KKTKRmamgvsalthspssssissvssvassvggrpsRSGLLTETSSryarkISGTTALQEALKEKQQHIEQLLAERDLE 379
Cdd:COG5244    77 AYEKI--------------------------------KGGLVCESKG-----MDKDGEIKQENHEDRIHFEESKIRRLEE 119
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 380 RAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLVENVRKEKVDLSNQLEEERRKVEDLQfrveeesitkgD 459
Cdd:COG5244   120 TIEALKSTEKEEIVELRRENEELDKINLSLRERISSEEPELNKDGSKLSYDELKEFVEESRVQVYDMV-----------E 188
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 460 LETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLttvaeksrvlqLEEELSLRRGEIEELQHCL--LQSgpppADH 537
Cdd:COG5244   189 LVSDISETLNRNGSIQRSSVRECERSNIHDVLFLVNGI-----------LDGVIDELNGELERLRRQLvsLMS----SHG 253
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 538 PEAAETLRLRERLLSASKEHQRDSTLLQDKYEHMLktyqteVDKLRAANEKYAQevADLKAKVQQAT----TENMGLMDN 613
Cdd:COG5244   254 IEVEENSRLKATLEKFQSLELKVNTLQEELYQNKL------LKKFYQIYEPFAQ--AALSSQLQYLAevieSENFGKLEN 325
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 614 wkSKLDSLASDHQKSLEDLKATLNsgPGAQQKEIGELKALVE--GIKMEHQLELGNlQAKHDLETAMHgkekegLRQKLQ 691
Cdd:COG5244   326 --IEIHIILKVLSSISYALHIYTI--KNTPDHLETTLQCFVNiaPISMWLSEFLQR-KFSSKQETAFS------ICQFLE 394
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 692 EVQEELAGLQQHwREQLEEQASQ-HRL-----ELQEAQDQCR-DAQLRAQELEGL-DVEYRGQAQAIEFLKEQISLAEKK 763
Cdd:COG5244   395 DNKDVTLILKIL-HPILETTVPKlLAFlrtnsNFNDNDTLCLiGSLYEIARIDKLiGKEEISKQDNRLFLYPSCDITLSS 473
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 764 MLDYeMLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSAQHSHVIESSDLSEETIRMKETVEGLQDKLNK-------- 835
Cdd:COG5244   474 ILTI-LFSDKLEVFFQGIESLLENITIFPEQPSQQTSDSENIKENSLLSDRLNEENIRLKEVLVQKENMLTEetkikiii 552
                         650
                  ....*....|....*....
gi 1907163864 836 -RDKEVTALTSQMDMLRAQ 853
Cdd:COG5244   553 gRDLERKTLEENIKTLKVE 571
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
357-798 1.28e-15

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 81.52  E-value: 1.28e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 357 ALQEALKEKQqhIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQheqyVAEAEEKLQRARLlvenvrkekvdlsnQL 436
Cdd:COG1196   217 ELKEELKELE--AELLLLKLRELEAELEELEAELEELEAELEELEAE----LAELEAELEELRL--------------EL 276
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 437 EEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEELSLR 516
Cdd:COG1196   277 EELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA 356
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 517 RGEIEELQHCLLQsgpppaDHPEAAETLRLRERLLSASKEHQRDSTLLQDKYEHMLKTYQTEVDKLRAANEKYAQEVADL 596
Cdd:COG1196   357 EAELAEAEEALLE------AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEAL 430
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 597 KAKVQQATTEnmglmdnwKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKALVEGIKMEHQLELgNLQAKHDLET 676
Cdd:COG1196   431 AELEEEEEEE--------EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA-RLLLLLEAEA 501
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 677 AMHGKEKEGLRQKLQEVQEELAGL--QQHWREQLEEQASQHRLELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEFLK 754
Cdd:COG1196   502 DYEGFLEGVKAALLLAGLRGLAGAvaVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDK 581
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 1907163864 755 EQISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAENRLQAA 798
Cdd:COG1196   582 IRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGR 625
NIP100 COG5244
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ...
82-143 1.17e-14

Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227569 [Multi-domain]  Cd Length: 669  Bit Score: 78.19  E-value: 1.17e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907163864  82 VGERVWVNGVKpGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRP 143
Cdd:COG5244     6 VNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRP 66
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
356-850 1.19e-13

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 75.36  E-value: 1.19e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 356 TALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQY---VAEAEEKLQRARLLVENVRKEKVDL 432
Cdd:COG1196   284 EEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELeeeLEELEEELEEAEEELEEAEAELAEA 363
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 433 SNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEE 512
Cdd:COG1196   364 EEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 513 LSLRRGEIEELQHcllqsgpppadhpEAAETLRLRERLLSASKEHQRDSTLLQDKYEHMLKTYQTEVDKLRAANEKYAQE 592
Cdd:COG1196   444 LEEAAEEEAELEE-------------EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGV 510
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 593 VADLKAKVQQATTENMGLMDNWKSKLDSLASDHQKSLEDLKATLNSGPGAQQkeIGELKALVEG---------IKMEHQL 663
Cdd:COG1196   511 KAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAA--IEYLKAAKAGratflpldkIRARAAL 588
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 664 ELGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAG--LQQHWREQLEEQASQHRLELQEAQDQCRDAQLRAQELEGLDV 741
Cdd:COG1196   589 AAALARGAIGAAVDLVASDLREADARYYVLGDTLLGrtLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRR 668
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 742 EYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSAQHSHVIESSDLSEETIR 821
Cdd:COG1196   669 ELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
                         490       500       510
                  ....*....|....*....|....*....|.
gi 1907163864 822 MKETVEGLQDKLNKRD--KEVTALTSQMDML 850
Cdd:COG1196   749 EEEALEELPEPPDLEEleRELERLEREIEAL 779
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
341-799 1.45e-12

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 71.51  E-value: 1.45e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 341 LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQheqyVAEAEEKLQRARL 420
Cdd:COG1196   290 EYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEE----LEEAEAELAEAEE 365
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 421 LVENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTV 500
Cdd:COG1196   366 ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 501 AEKSRVLQLEEELSLRRGEIEELQhcllqsgpppADHPEAAETLRLRERLLSASKEHQRDSTLLQDKYEHMLKT--YQTE 578
Cdd:COG1196   446 EAAEEEAELEEEEEALLELLAELL----------EEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGvkAALL 515
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 579 VDKLRAANEKYAQEVADLKAKVQQATTENMGLMDNWKSKLDSLASDHQKSLEDLKAT------LNSGPGAQQKEIGELKA 652
Cdd:COG1196   516 LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGratflpLDKIRARAALAAALARG 595
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 653 LVEGIKMEHQLELGNLQAK------HDLETAMHGKEKEGLRQKLQEVQEELAGLQQHWREQLEEQASQHRLELQEAQDQC 726
Cdd:COG1196   596 AIGAAVDLVASDLREADARyyvlgdTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALL 675
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907163864 727 RDAQLRAQELEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAENRLQAAE 799
Cdd:COG1196   676 EAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
332-667 4.37e-12

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 70.09  E-value: 4.37e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  332 GGRPSRSGLLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQ---HEQYV 408
Cdd:TIGR02168  663 GGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDlarLEAEV 742
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  409 AEAEEKLQRARLLVENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERL 488
Cdd:TIGR02168  743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  489 LRELADNRLTTVAEKSRVLQLEEELSLRRGEIEELQHCLLQSGPPPADHPEAAetlrlrERLLSASKEHQRDSTLLQDKY 568
Cdd:TIGR02168  823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEL------EALLNERASLEEALALLRSEL 896
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  569 EHM---LKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTENMGLmdnwkskLDSLASDHQKSLEDLKATLNSGPGAQQK 645
Cdd:TIGR02168  897 EELseeLRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNL-------QERLSEEYSLTLEEAEALENKIEDDEEE 969
                          330       340
                   ....*....|....*....|..
gi 1907163864  646 EIGELKALVEGIKmehqlELGN 667
Cdd:TIGR02168  970 ARRRLKRLENKIK-----ELGP 986
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
362-849 8.81e-12

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 69.38  E-value: 8.81e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  362 LKEKQQHIEQLLAERDLE------RAEVAKATSHICEVEKEIALLKA--QHEQYVAEAEEKLQRARLLVENVRKEKVDLS 433
Cdd:pfam15921  262 LQQHQDRIEQLISEHEVEitglteKASSARSQANSIQSQLEIIQEQArnQNSMYMRQLSDLESTVSQLRSELREAKRMYE 341
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  434 NQLEEERRKV-----EDLQFRVEEESITK--GDLETQTQLEHARIGELEQSLLLEKAQAERL-------------LRELA 493
Cdd:pfam15921  342 DKIEELEKQLvlansELTEARTERDQFSQesGNLDDQLQKLLADLHKREKELSLEKEQNKRLwdrdtgnsitidhLRREL 421
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  494 DNRLTTVAEKSRVL---------QLEEELSLRRGEIEELQHCLLQSGPPPADHP---EAAETLRLRERLLSASKEHQRD- 560
Cdd:pfam15921  422 DDRNMEVQRLEALLkamksecqgQMERQMAAIQGKNESLEKVSSLTAQLESTKEmlrKVVEELTAKKMTLESSERTVSDl 501
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  561 STLLQDKyEHMLKTYQTEVDKLRAANEKYAQEVADLKA---------------KVQQA-----------TTENM------ 608
Cdd:pfam15921  502 TASLQEK-ERAIEATNAEITKLRSRVDLKLQELQHLKNegdhlrnvqtecealKLQMAekdkvieilrqQIENMtqlvgq 580
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  609 -----GLMDNWKSKLDSLASDHQKSLEDLKATLNSgpgaQQKEIGELKALVEGIKMEhQLELGN-----LQAKHDL--ET 676
Cdd:pfam15921  581 hgrtaGAMQVEKAQLEKEINDRRLELQEFKILKDK----KDAKIRELEARVSDLELE-KVKLVNagserLRAVKDIkqER 655
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  677 AMHGKEKEGLRQKLQEVQEELAGLQQHWR---EQLEEQASQHRLELQEAQDQCRDAQLRAQELEGLD------------- 740
Cdd:pfam15921  656 DQLLNEVKTSRNELNSLSEDYEVLKRNFRnksEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDghamkvamgmqkq 735
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  741 -VEYRGQAQA----IEFLKEQISLA---------EKKMLDYEMLQRAEAQS---------RQEAERLREKLLVAENRLQA 797
Cdd:pfam15921  736 iTAKRGQIDAlqskIQFLEEAMTNAnkekhflkeEKNKLSQELSTVATEKNkmagelevlRSQERRLKEKVANMEVALDK 815
                          570       580       590       600       610
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1907163864  798 AeSLCSAQHSHVIESSDlsEETIRMKetvegLQDKLNKRDKEVTALTSQMDM 849
Cdd:pfam15921  816 A-SLQFAECQDIIQRQE--QESVRLK-----LQHTLDVKELQGPGYTSNSSM 859
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
433-797 3.34e-11

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 67.39  E-value: 3.34e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  433 SNQLEEERRKVEDLQFRVEEESITKGDLETQTQleharigELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEE 512
Cdd:TIGR02168  676 RREIEELEEKIEELEEKIAELEKALAELRKELE-------ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEER 748
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  513 LSLRRGEIEELQHcllqsgpppadhpEAAETLRLRERLLSASKEHQRDSTLLQDKYEhmlkTYQTEVDKLRAANEKYAQE 592
Cdd:TIGR02168  749 IAQLSKELTELEA-------------EIEELEERLEEAEEELAEAEAEIEELEAQIE----QLKEELKALREALDELRAE 811
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  593 VADLKAKVQQATTENMGLMDNwkskldslASDHQKSLEDLkatlnsgpgaqQKEIGELKALVEgiKMEHQLE-LGNLQAK 671
Cdd:TIGR02168  812 LTLLNEEAANLRERLESLERR--------IAATERRLEDL-----------EEQIEELSEDIE--SLAAEIEeLEELIEE 870
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  672 HDLETAMHGKEKEGLRQKLQEVQEELAGLQQHWREqLEEQASQHRLELQEAQDQCRDAQLRAQELEgldveyrgqaQAIE 751
Cdd:TIGR02168  871 LESELEALLNERASLEEALALLRSELEELSEELRE-LESKRSELRRELEELREKLAQLELRLEGLE----------VRID 939
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*.
gi 1907163864  752 FLKEQisLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAENRLQA 797
Cdd:TIGR02168  940 NLQER--LSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
410-788 1.49e-10

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 65.08  E-value: 1.49e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  410 EAEEKLQRARllvENVRKekvdLSNQLEEERRKVEDLQFRVEeesITKGDLETQTQLEHARIGELEQSLLLEKAQAERLL 489
Cdd:TIGR02168  176 ETERKLERTR---ENLDR----LEDILNELERQLKSLERQAE---KAERYKELKAELRELELALLVLRLEELREELEELQ 245
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  490 RELADNRLTTVAEKSRVLQLEEELSLRRGE-------IEELQHCLLQSGpppadhpEAAETLRLRERLLSASKEHQRDSt 562
Cdd:TIGR02168  246 EELKEAEEELEELTAELQELEEKLEELRLEvseleeeIEELQKELYALA-------NEISRLEQQKQILRERLANLERQ- 317
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  563 llqdkyehmLKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTEnmglmdnwkskLDSLASDHQKsLEDLKATLNSGPGA 642
Cdd:TIGR02168  318 ---------LEELEAQLEELESKLDELAEELAELEEKLEELKEE-----------LESLEAELEE-LEAELEELESRLEE 376
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  643 QQKEIGELKALVegIKMEHQLELgnlqakhdletamhgkekegLRQKLQEVQEELAGLQQHwREQLEEQASQHRLELQEA 722
Cdd:TIGR02168  377 LEEQLETLRSKV--AQLELQIAS--------------------LNNEIERLEARLERLEDR-RERLQQEIEELLKKLEEA 433
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907163864  723 QDQCRDAQL--RAQELEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMlQRAEAQSRQEA-ERLREKL 788
Cdd:TIGR02168  434 ELKELQAELeeLEEELEELQEELERLEEALEELREELEEAEQALDAAER-ELAQLQARLDSlERLQENL 501
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
461-800 4.96e-10

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 63.54  E-value: 4.96e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  461 ETQTQLEHAR---------IGELEQSLLLEKAQAERllreladnrlttvAEKSRVLqleeelslrRGEIEELQHCLLqsg 531
Cdd:TIGR02168  176 ETERKLERTRenldrlediLNELERQLKSLERQAEK-------------AERYKEL---------KAELRELELALL--- 230
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  532 pppadhpeAAETLRLRERLlSASKEHQRDSTLLQDKYEHMLKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTENMGLM 611
Cdd:TIGR02168  231 --------VLRLEELREEL-EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLE 301
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  612 DNWKSKLDSLASDHQ--KSLEDLKATLNSGPGAQQKEIGELKALVEGIKMEHQLELGNLQAKHDLETAMHGKEKEgLRQK 689
Cdd:TIGR02168  302 QQKQILRERLANLERqlEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE-LEEQ 380
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  690 LQEVQEELAglqqhwreQLEEQASQHRLELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEFLKEQISLAEKKMLdYEM 769
Cdd:TIGR02168  381 LETLRSKVA--------QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEE-LEE 451
                          330       340       350
                   ....*....|....*....|....*....|.
gi 1907163864  770 LQRAEAQSRQEAERLREKLLVAENRLQAAES 800
Cdd:TIGR02168  452 LQEELERLEEALEELREELEEAEQALDAAER 482
PTZ00121 PTZ00121
MAEBL; Provisional
343-839 7.84e-10

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 62.85  E-value: 7.84e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  343 ETSSRY--ARKISGTTALQEALK--EKQQHIEQLLAERDLERAEVAKaTSHICEVEKEIALLKAQHEQYVAEAEEKlQRA 418
Cdd:PTZ00121  1215 EEARKAedAKKAEAVKKAEEAKKdaEEAKKAEEERNNEEIRKFEEAR-MAHFARRQAAIKAEEARKADELKKAEEK-KKA 1292
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  419 RLLVENVRKEKVDLSNQLEEERRKVEDLQFRVEE------------ESITKGDlETQTQLEHARIGELEQSllLEKAQAE 486
Cdd:PTZ00121  1293 DEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEakkkadaakkkaEEAKKAA-EAAKAEAEAAADEAEAA--EEKAEAA 1369
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  487 RLLRELADNRLTTVAEKSRVLQLEEELSLRRGEIEELQHCLLQSGPPPADHPEA---AETLRLRERLLSASKEhQRDSTL 563
Cdd:PTZ00121  1370 EKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAkkkAEEKKKADEAKKKAEE-AKKADE 1448
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  564 LQDKYEHMLKTYQTEvdklRAANEKYAQEVADLKAKVQQATTENMGLMDNWKSKLDSL--ASDHQKSLEDLKATLNSGPG 641
Cdd:PTZ00121  1449 AKKKAEEAKKAEEAK----KKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAkkAAEAKKKADEAKKAEEAKKA 1524
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  642 AQQKEIGELKALVEGIKMEHQLELGNLQAKHDLETAMHGKEKEglRQKLQEVQEELAGLQQHWREQLEEQASQHRLELQE 721
Cdd:PTZ00121  1525 DEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAE--EAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYE 1602
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  722 AQDQCRDAQLRAQElegldvEYRGQAqaieflkEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKllVAENRLQAAESL 801
Cdd:PTZ00121  1603 EEKKMKAEEAKKAE------EAKIKA-------EELKKAEEEKKKVEQLKKKEAEEKKKAEELKKA--EEENKIKAAEEA 1667
                          490       500       510
                   ....*....|....*....|....*....|....*...
gi 1907163864  802 CSAQhshviESSDLSEETIRMKETVEGLQDKLNKRDKE 839
Cdd:PTZ00121  1668 KKAE-----EDKKKAEEAKKAEEDEKKAAEALKKEAEE 1700
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
350-853 1.26e-09

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 62.01  E-value: 1.26e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  350 RKISGTTALQEALKEKQQHIEQLLAE-----RDLERAEVAKATSHICEVEKEIALLKAQ---HEQYVAEAEEKLQRARLL 421
Cdd:TIGR02169  251 EELEKLTEEISELEKRLEEIEQLLEElnkkiKDLGEEEQLRVKEKIGELEAEIASLERSiaeKERELEDAEERLAKLEAE 330
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  422 VENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLL-----LEKAQAER--LLRELAD 494
Cdd:TIGR02169  331 IDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKdyrekLEKLKREIneLKRELDR 410
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  495 NRLTTVAEKSRVLQLEEELSLRRGEIEELQHCLLQSgpppADHPEAAET--LRLRERLLSASKEHQRDSTLLqDKYEHML 572
Cdd:TIGR02169  411 LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDK----ALEIKKQEWklEQLAADLSKYEQELYDLKEEY-DRVEKEL 485
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  573 KTYQTEVDKLRAANEKYAQEVADLKAKVQQATTENMGL-------------------------MDNWKSKLDSLASDHQK 627
Cdd:TIGR02169  486 SKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVhgtvaqlgsvgeryataievaagnrLNNVVVEDDAVAKEAIE 565
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  628 SLEDLKAT------LN-----SGPGAQQKEIGELKALVEGIKMEHQLE------LGNLQAKHDLETA-----------MH 679
Cdd:TIGR02169  566 LLKRRKAGratflpLNkmrdeRRDLSILSEDGVIGFAVDLVEFDPKYEpafkyvFGDTLVVEDIEAArrlmgkyrmvtLE 645
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  680 GK--EKEG-------------------------LRQKLQEVQEELAGLQQHwREQLEEQASQHRLELQEAQDQCRDAQLR 732
Cdd:TIGR02169  646 GElfEKSGamtggsraprggilfsrsepaelqrLRERLEGLKRELSSLQSE-LRRIENRLDELSQELSDASRKIGEIEKE 724
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  733 AQELEGldvEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSAQHShVIES 812
Cdd:TIGR02169  725 IEQLEQ---EEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEI-QAEL 800
                          570       580       590       600
                   ....*....|....*....|....*....|....*....|.
gi 1907163864  813 SDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQ 853
Cdd:TIGR02169  801 SKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQ 841
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
337-764 1.30e-09

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 62.01  E-value: 1.30e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  337 RSGLLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQ 416
Cdd:TIGR02169  651 KSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQ 730
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  417 RARLLVEnvrkekvdlsnQLEEERRKVEDLQFRVEEESITKGDLEtqtqlehARIGELEQSLLLEKAQAERLLRELADNR 496
Cdd:TIGR02169  731 EEEKLKE-----------RLEELEEDLSSLEQEIENVKSELKELE-------ARIEELEEDLHKLEEALNDLEARLSHSR 792
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  497 LTTVAEKSRvlQLEEELSLRRGEIEELQHCLlqsgpppadhpeaaETLRLRERLLSASKEH-QRDSTLLQDKyehmLKTY 575
Cdd:TIGR02169  793 IPEIQAELS--KLEEEVSRIEARLREIEQKL--------------NRLTLEKEYLEKEIQElQEQRIDLKEQ----IKSI 852
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  576 QTEVDKLRAANEKYAQEVADLKAKVQQattenmglmdnwkskLDSLASDHQKSLEDLKATLnsgpGAQQKEIGELKALVE 655
Cdd:TIGR02169  853 EKEIENLNGKKEELEEELEELEAALRD---------------LESRLGDLKKERDELEAQL----RELERKIEELEAQIE 913
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  656 giKMEHQLELgnlqakhdletamhgkekegLRQKLQEVQEELAGLQQHWREQLEEqaSQHRLELQEAQDQCRDAQLRAQE 735
Cdd:TIGR02169  914 --KKRKRLSE--------------------LKAKLEALEEELSEIEDPKGEDEEI--PEEELSLEDVQAELQRVEEEIRA 969
                          410       420
                   ....*....|....*....|....*....
gi 1907163864  736 LEglDVEYRGQAQAIEFLKEQISLAEKKM 764
Cdd:TIGR02169  970 LE--PVNMLAIQEYEEVLKRLDELKEKRA 996
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
358-853 1.42e-09

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 62.00  E-value: 1.42e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  358 LQEALKEKQQHIEQLLAERDLERAEVAkatshicEVEKEIALLKAQHEqyvaEAEEKLQRARLLVENVRKEKVDLSNQLE 437
Cdd:TIGR02168  314 LERQLEELEAQLEELESKLDELAEELA-------ELEEKLEELKEELE----SLEAELEELEAELEELESRLEELEEQLE 382
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  438 EERRKVEDLqfRVEEESITKgdleTQTQLEhARIGELEQSLLLEKAQAERLLRELADNRLTTVaeksrvlqlEEELSLRR 517
Cdd:TIGR02168  383 TLRSKVAQL--ELQIASLNN----EIERLE-ARLERLEDRRERLQQEIEELLKKLEEAELKEL---------QAELEELE 446
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  518 GEIEELQHCLlqsgpppADHPEAAETLR-----LRERLLSASKEHQRDS---TLLQDKYEHmLKTYQTEVDKLRAANEKY 589
Cdd:TIGR02168  447 EELEELQEEL-------ERLEEALEELReeleeAEQALDAAERELAQLQarlDSLERLQEN-LEGFSEGVKALLKNQSGL 518
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  590 AQEV----------ADLKAKVQQATTENMG--LMDNWKSKLDSLASDHQKS--------LEDLKATLNSGPGAQ--QKEI 647
Cdd:TIGR02168  519 SGILgvlselisvdEGYEAAIEAALGGRLQavVVENLNAAKKAIAFLKQNElgrvtflpLDSIKGTEIQGNDREilKNIE 598
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  648 GELKALVEGIKMEHQLE------LGNLQAKHDLETAMH--GKEKEGLR-----------------------QKLQEVQEE 696
Cdd:TIGR02168  599 GFLGVAKDLVKFDPKLRkalsylLGGVLVVDDLDNALElaKKLRPGYRivtldgdlvrpggvitggsaktnSSILERRRE 678
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  697 LAGLQQHwREQLEEQASQHRLELQEAQDQCRDAQlraQELEGLDVEYRGQAQAIEFLKEQISLAEKKMldyEMLQRAEAQ 776
Cdd:TIGR02168  679 IEELEEK-IEELEEKIAELEKALAELRKELEELE---EELEQLRKELEELSRQISALRKDLARLEAEV---EQLEERIAQ 751
                          490       500       510       520       530       540       550
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907163864  777 SRQEAERLREKLLVAENRLQaaeslcsaqhshviessDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQ 853
Cdd:TIGR02168  752 LSKELTELEAEIEELEERLE-----------------EAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE 811
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
392-857 2.81e-09

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 60.55  E-value: 2.81e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 392 EVEKEIALLKAQHEQYvAEAEEKLQRARLLVENVRKEKvdlsNQLEEERRKVEDLQfrveeesitkgdletQTQLEHARI 471
Cdd:COG4717    75 ELEEELKEAEEKEEEY-AELQEELEELEEELEELEAEL----EELREELEKLEKLL---------------QLLPLYQEL 134
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 472 GELEQSLLLEKAQAERLLRELAdnrlttvaeksRVLQLEEELSLRRGEIEELQhcllqsgpppadhpeaaETLRLRERLL 551
Cdd:COG4717   135 EALEAELAELPERLEELEERLE-----------ELRELEEELEELEAELAELQ-----------------EELEELLEQL 186
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 552 SASKEHQrdstllqdkyehmLKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTEnmglMDNWKSKLdsLASDHQKSLED 631
Cdd:COG4717   187 SLATEEE-------------LQDLAEELEELQQRLAELEEELEEAQEELEELEEE----LEQLENEL--EAAALEERLKE 247
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 632 LKATLNSGPG-----AQQKEIGELKALVEGIkmeHQLELGNLQakhdLETAMHGKEKEGLRQKLQEVQeELAGLQQHWRE 706
Cdd:COG4717   248 ARLLLLIAAAllallGLGGSLLSLILTIAGV---LFLVLGLLA----LLFLLLAREKASLGKEAEELQ-ALPALEELEEE 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 707 QLEEQASQHRLELQEAQDQCRDAQLRAQELEGLDVEYRGQAQ--AIEFLKEQIS--LAEKKMLDYEMLQRAEAQSrQEAE 782
Cdd:COG4717   320 ELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEelQLEELEQEIAalLAEAGVEDEEELRAALEQA-EEYQ 398
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907163864 783 RLREKLLVAENRLQAAESLCSAQHSHVIEsSDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQSQLS 857
Cdd:COG4717   399 ELKEELEELEEQLEELLGELEELLEALDE-EELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELA 472
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
357-834 4.12e-09

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 60.46  E-value: 4.12e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  357 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEE---KLQRARLL-----VENVRKE 428
Cdd:TIGR02168  369 ELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEllkKLEEAELKelqaeLEELEEE 448
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  429 KVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEqSLLLEKAQAERLLRELADNRLTTVAEKSRVLQ 508
Cdd:TIGR02168  449 LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLE-RLQENLEGFSEGVKALLKNQSGLSGILGVLSE 527
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  509 L---EEEL----------------------------SLRRGEIEELQHCLLQSGPPPADHPEAAETLRLRERLLSASKEH 557
Cdd:TIGR02168  528 LisvDEGYeaaieaalggrlqavvvenlnaakkaiaFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDL 607
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  558 QRDSTLLQDKYEHMLKTYQTeVDKLRAANEKY-------------------------------------AQEVADLKAKV 600
Cdd:TIGR02168  608 VKFDPKLRKALSYLLGGVLV-VDDLDNALELAkklrpgyrivtldgdlvrpggvitggsaktnssilerRREIEELEEKI 686
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  601 QQATTENmglmDNWKSKLDSLASDHQkSLEDLKATLNSGPGAQQKEIGELKALVEGIKMEHQ----------LELGNLQA 670
Cdd:TIGR02168  687 EELEEKI----AELEKALAELRKELE-ELEEELEQLRKELEELSRQISALRKDLARLEAEVEqleeriaqlsKELTELEA 761
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  671 KHDLETAMHGKEKEGL------RQKLQEVQEELAGLQQHWREQLEEQASQHRLELQEAQDQCRDAQLRAQELEGLDVEYR 744
Cdd:TIGR02168  762 EIEELEERLEEAEEELaeaeaeIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  745 GQAQAIEFLKEQISLAEKKMLD------------------YEMLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSAQH 806
Cdd:TIGR02168  842 DLEEQIEELSEDIESLAAEIEEleelieeleseleallneRASLEEALALLRSELEELSEELRELESKRSELRRELEELR 921
                          570       580
                   ....*....|....*....|....*...
gi 1907163864  807 SHViesSDLSEETIRMKETVEGLQDKLN 834
Cdd:TIGR02168  922 EKL---AQLELRLEGLEVRIDNLQERLS 946
PTZ00121 PTZ00121
MAEBL; Provisional
349-840 4.20e-09

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 60.54  E-value: 4.20e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  349 ARKISGTTALQEALK--EKQQHIEQLL--AERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLVEN 424
Cdd:PTZ00121  1295 AKKAEEKKKADEAKKkaEEAKKADEAKkkAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  425 VRKEKVDLSNQLEEERRKVEDLQFRVEEESiTKGDLETQTQLEHARIGELEQSlLLEKAQAERLLRELADNR----LTTV 500
Cdd:PTZ00121  1375 EAKKKADAAKKKAEEKKKADEAKKKAEEDK-KKADELKKAAAAKKKADEAKKK-AEEKKKADEAKKKAEEAKkadeAKKK 1452
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  501 AEKSRVLQLEEELSLRRGEIEELQHcllqsgppPADHPEAAETLRLRERLLSASKEHQRDSTLLQDKYEHMLKTYQT-EV 579
Cdd:PTZ00121  1453 AEEAKKAEEAKKKAEEAKKADEAKK--------KAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAkKA 1524
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  580 DKLRAANEKYAQEVADLKAKVQQAttenmglmDNWKSKLDSLASDHQKSLEDLKATLNSGPGAQQKeiGELKALVEGIKM 659
Cdd:PTZ00121  1525 DEAKKAEEAKKADEAKKAEEKKKA--------DELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK--AEEAKKAEEARI 1594
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  660 EHQLELGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLQQHWREQLEEQASQHRLELQEAQDQCRDAQL--RAQELE 737
Cdd:PTZ00121  1595 EEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEakKAEEDK 1674
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  738 GLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERLRE-----KLLVAENRLQAAESLCSAQHSHV--- 809
Cdd:PTZ00121  1675 KKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKaeeenKIKAEEAKKEAEEDKKKAEEAKKdee 1754
                          490       500       510       520
                   ....*....|....*....|....*....|....*....|..
gi 1907163864  810 ---------IESSDLSEETIRMKETV--EGLQDKLNKRDKEV 840
Cdd:PTZ00121  1755 ekkkiahlkKEEEKKAEEIRKEKEAVieEELDEEDEKRRMEV 1796
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
408-732 4.32e-09

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 60.47  E-value: 4.32e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  408 VAEAEEKLQRARLLVENVRK----------EKVDLSNQLEEERRKVE---DLQFRVEEESIT-----KGDLETQTQLEHA 469
Cdd:TIGR02169  165 VAEFDRKKEKALEELEEVEEnierldliidEKRQQLERLRREREKAEryqALLKEKREYEGYellkeKEALERQKEAIER 244
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  470 RIGELEQSLLLEKAQAERLLRELA--DNRLTTVAEKSRVLQLEEELSLRRgEIEELQHCLLQSGPPPADHPEAAETLRLR 547
Cdd:TIGR02169  245 QLASLEEELEKLTEEISELEKRLEeiEQLLEELNKKIKDLGEEEQLRVKE-KIGELEAEIASLERSIAEKERELEDAEER 323
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  548 ERLLsaskEHQRDSTLLQ-DKYEHMLKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTENmglmDNWKSKLDSLasdhQ 626
Cdd:TIGR02169  324 LAKL----EAEIDKLLAEiEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEF----AETRDELKDY----R 391
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  627 KSLEDLKATLNSGPGAQQKEIGELKALVEGIKmEHQLELGNLQAKH-DLETAMH--GKEKEGLRQKLQEVQEELAGLQQH 703
Cdd:TIGR02169  392 EKLEKLKREINELKRELDRLQEELQRLSEELA-DLNAAIAGIEAKInELEEEKEdkALEIKKQEWKLEQLAADLSKYEQE 470
                          330       340       350
                   ....*....|....*....|....*....|....*
gi 1907163864  704 WR------EQLEEQASQHRLELQEAQDQCRDAQLR 732
Cdd:TIGR02169  471 LYdlkeeyDRVEKELSKLQRELAEAEAQARASEER 505
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
353-853 5.05e-09

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 60.07  E-value: 5.05e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  353 SGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEE-KLQRARLLVENVRKEKVD 431
Cdd:TIGR02168  372 SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEaELKELQAELEELEEELEE 451
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  432 LSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEqSLLLEKAQAERLLRELADNRLTTVAEKSRVLQL-- 509
Cdd:TIGR02168  452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLE-RLQENLEGFSEGVKALLKNQSGLSGILGVLSELis 530
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  510 -EEEL----------------------------SLRRGEIEELQHCLLQSGPPPADHPEAAETLRLRERLLSASKEHQRD 560
Cdd:TIGR02168  531 vDEGYeaaieaalggrlqavvvenlnaakkaiaFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKF 610
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  561 STLLQDKYEHMLKTYQTeVDKLRAANEKY-------------------------------------AQEVADLKAKVQQA 603
Cdd:TIGR02168  611 DPKLRKALSYLLGGVLV-VDDLDNALELAkklrpgyrivtldgdlvrpggvitggsaktnssilerRREIEELEEKIEEL 689
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  604 TTENmglmDNWKSKLDSLASDHQkSLEDLKATLNSGPGAQQKEIGELKALVEGIKMEHQLeLGNLQAKHDLETAMHGKEK 683
Cdd:TIGR02168  690 EEKI----AELEKALAELRKELE-ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ-LEERIAQLSKELTELEAEI 763
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  684 EGLRQKLQEVQEELAGLQQHwREQLEEQASQHRLELQEAQDQCRDAQlraQELEGLDVEYRGQAQAIEFLKEQISLAEKk 763
Cdd:TIGR02168  764 EELEERLEEAEEELAEAEAE-IEELEAQIEQLKEELKALREALDELR---AELTLLNEEAANLRERLESLERRIAATER- 838
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  764 mldyeMLQRAEAQSRQEAERLrEKLLVAENRLQAAESLCSAQHSHVIESSDLSEETI-RMKETVEGLQDKLNKRDKEVTA 842
Cdd:TIGR02168  839 -----RLEDLEEQIEELSEDI-ESLAAEIEELEELIEELESELEALLNERASLEEALaLLRSELEELSEELRELESKRSE 912
                          570
                   ....*....|.
gi 1907163864  843 LTSQMDMLRAQ 853
Cdd:TIGR02168  913 LRRELEELREK 923
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
358-801 2.24e-08

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 58.13  E-value: 2.24e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 358 LQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEiallKAQHEQYVAEAEEKLQRARLLVENVRKEKVDLSNQLE 437
Cdd:PRK02224  284 LRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDR----DEELRDRLEECRVAAQAHNEEAESLREDADDLEERAE 359
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 438 EERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQ---AERLLRELADNRLTTvaeKSRVLQLEEELS 514
Cdd:PRK02224  360 ELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDlgnAEDFLEELREERDEL---REREAELEATLR 436
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 515 LRRGEIEELQHcLLQSGPPP--------ADHPEAAETLR-----LRERLLSASKEHQRdstlLQDKYEHM--LKTYQTEV 579
Cdd:PRK02224  437 TARERVEEAEA-LLEAGKCPecgqpvegSPHVETIEEDRerveeLEAELEDLEEEVEE----VEERLERAedLVEAEDRI 511
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 580 DKLRAANEKYAQEVADLKAKVQQATTENMGLMDNwKSKLDSLASDHQKSLEDLKatlnsgpGAQQKEIGELKALvEGIKM 659
Cdd:PRK02224  512 ERLEERREDLEELIAERRETIEEKRERAEELRER-AAELEAEAEEKREAAAEAE-------EEAEEAREEVAEL-NSKLA 582
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 660 EHQLELGNLQAKHDLETAMHGKEKEglRQKLQEVQEELAGLQQHWREQLEEQASQHRlELQEAQDQCRDAQLRAQelegl 739
Cdd:PRK02224  583 ELKERIESLERIRTLLAAIADAEDE--IERLREKREALAELNDERRERLAEKRERKR-ELEAEFDEARIEEARED----- 654
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 740 dveyrgQAQAIEFLKEqisLAEKkmLDYEMLQRAEAQSR--------QEAERLREKLLVAENRLQAAESL 801
Cdd:PRK02224  655 ------KERAEEYLEQ---VEEK--LDELREERDDLQAEigavenelEELEELRERREALENRVEALEAL 713
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
360-855 2.67e-08

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 57.93  E-value: 2.67e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  360 EALKEKQQHIEQLLAERDLERAEVAKATshICEVEKEIALLKAQHEQYVAEAEEKLQR-ARLLVENVRKEKVDLSNQLEE 438
Cdd:pfam12128  364 KALTGKHQDVTAKYNRRRSKIKEQNNRD--IAGIKDKLAKIREARDRQLAVAEDDLQAlESELREQLEAGKLEFNEEEYR 441
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  439 ERRKVEDLQFRVEEESITKGDLETQTQ----LEHARiGELEQSllleKAQAERLLRELADNRlTTVAEKSRVLQLEEE-L 513
Cdd:pfam12128  442 LKSRLGELKLRLNQATATPELLLQLENfderIERAR-EEQEAA----NAEVERLQSELRQAR-KRRDQASEALRQASRrL 515
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  514 SLRRGEIEELQHCLLqsgPPPAD-----HPEAAETLRLRERLLSASKEHQRD--STLLQDKYEHMLKTYQTEVDKLRAAN 586
Cdd:pfam12128  516 EERQSALDELELQLF---PQAGTllhflRKEAPDWEQSIGKVISPELLHRTDldPEVWDGSVGGELNLYGVKLDLKRIDV 592
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  587 EKYAQEVADLKAKVQQAttenmglmdnwKSKLDSlASDHQKSLEDLKATLNSGPGAQQKEIGELKALVEGIKMEHQ---L 663
Cdd:pfam12128  593 PEWAASEEELRERLDKA-----------EEALQS-AREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRrlfD 660
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  664 ELGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLQQHWREQLEEQASQHRLELQEAQ---DQCRDAQLrAQELEGLD 740
Cdd:pfam12128  661 EKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWqvvEGALDAQL-ALLKAAIA 739
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  741 VEYRGQAQAIEFLKEQI--SLAeKKMLDYEMLQRAEAQSRQEAERLREkllVAENRLQAAESLCSAQHSHVIESSDLSEE 818
Cdd:pfam12128  740 ARRSGAKAELKALETWYkrDLA-SLGVDPDVIAKLKREIRTLERKIER---IAVRRQEVLRYFDWYQETWLQRRPRLATQ 815
                          490       500       510
                   ....*....|....*....|....*....|....*..
gi 1907163864  819 TIRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQSQ 855
Cdd:pfam12128  816 LSNIERAISELQQQLARLIADTKLRRAKLEMERKASE 852
PTZ00121 PTZ00121
MAEBL; Provisional
350-695 2.97e-08

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 57.84  E-value: 2.97e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  350 RKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEialLKAQHEQYVAEAEEKLQRARLL-VENVRKE 428
Cdd:PTZ00121  1558 KKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEE---KKMKAEEAKKAEEAKIKAEELKkAEEEKKK 1634
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  429 KVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLT------TVAE 502
Cdd:PTZ00121  1635 VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAeelkkkEAEE 1714
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  503 KSRVLQLEEELSLRRGEIEELQHcllqsgpPPADHPEAAETLRLRE----RLLSASKEHQRDSTLLQDKYEHMLKTYQTE 578
Cdd:PTZ00121  1715 KKKAEELKKAEEENKIKAEEAKK-------EAEEDKKKAEEAKKDEeekkKIAHLKKEEEKKAEEIRKEKEAVIEEELDE 1787
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  579 VD-KLRAANEKYAQEVADLKAKVQQATTENMGLMDNWKSKLDSlasdhqkSLEDLKATLNSgpgaQQKEIGELKalvegi 657
Cdd:PTZ00121  1788 EDeKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDS-------AIKEVADSKNM----QLEEADAFE------ 1850
                          330       340       350
                   ....*....|....*....|....*....|....*...
gi 1907163864  658 kmEHQLELGNLQAKHDLETAMHGKEKEGLRQKLQEVQE 695
Cdd:PTZ00121  1851 --KHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEE 1886
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
359-847 9.74e-08

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 56.08  E-value: 9.74e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  359 QEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRarlLVENVRKEKVDLSNQLEE 438
Cdd:COG4913    287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLER---EIERLERELEERERRRAR 363
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  439 ERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAE----KSRVLQLEEELS 514
Cdd:COG4913    364 LEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEiaslERRKSNIPARLL 443
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  515 LRRGEIEElqhcllQSGPPPADHPEAAETLRLR----------ERLLsaskeHQRDSTLL-QDKYEHMLKTYqteVDKLR 583
Cdd:COG4913    444 ALRDALAE------ALGLDEAELPFVGELIEVRpeeerwrgaiERVL-----GGFALTLLvPPEHYAAALRW---VNRLH 509
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  584 AANEKYAQEVADLKAKVQQATTENMGLMDnwksKLDSLASDHQK----------------SLEDLKAT--------LNSG 639
Cdd:COG4913    510 LRGRLVYERVRTGLPDPERPRLDPDSLAG----KLDFKPHPFRAwleaelgrrfdyvcvdSPEELRRHpraitragQVKG 585
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  640 PGAQQkEIGELKALVEgikmEHQLELGNLQAKHDLEtamhgKEKEGLRQKLQEVQEELAGLQQhWREQLEEQASQHR--- 716
Cdd:COG4913    586 NGTRH-EKDDRRRIRS----RYVLGFDNRAKLAALE-----AELAELEEELAEAEERLEALEA-ELDALQERREALQrla 654
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  717 ------LELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEFLKEQISLAEKKmldYEMLQRAEAQSRQEAERLREKLLV 790
Cdd:COG4913    655 eyswdeIDVASAEREIAELEAELERLDASSDDLAALEEQLEELEAELEELEEE---LDELKGEIGRLEKELEQAEEELDE 731
                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907163864  791 AENRLQAAESLCSAQHS----HVIESSDLSEETIRMKETVEGLQDKLN-KRDKEVTALTSQM 847
Cdd:COG4913    732 LQDRLEAAEDLARLELRalleERFAAALGDAVERELRENLEERIDALRaRLNRAEEELERAM 793
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
405-603 1.39e-07

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 55.41  E-value: 1.39e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 405 EQYVAE-AEEKLQRARLLVENVRKEKVDLSNQLEEERRKVEDlqFRVEEESItkgDLETQTQLEHARIGELEQSLL---L 480
Cdd:COG3206   159 EAYLEQnLELRREEARKALEFLEEQLPELRKELEEAEAALEE--FRQKNGLV---DLSEEAKLLLQQLSELESQLAearA 233
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 481 EKAQAERLLRELAD------NRLTTVAEKSRVLQLEEELSLRRGEIEELqhcLLQSGPppaDHPEAAETLRLRERLLSas 554
Cdd:COG3206   234 ELAEAEARLAALRAqlgsgpDALPELLQSPVIQQLRAQLAELEAELAEL---SARYTP---NHPDVIALRAQIAALRA-- 305
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1907163864 555 kehqrdstLLQDKYEHMLKTYQTEVDKLRAANEKYAQEVADLKAKVQQA 603
Cdd:COG3206   306 --------QLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAEL 346
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
341-785 1.39e-07

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 55.16  E-value: 1.39e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 341 LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERaEVAKATSHICEVEKEIALLKAQHEQYvAEAEEKLQRARL 420
Cdd:COG4717    93 LQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQ-ELEALEAELAELPERLEELEERLEEL-RELEEELEELEA 170
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 421 LVENVRKEKVDL--------SNQLEEERRKVEDLQFRVEEesitkgdLETQTQLEHARIGELEQSL--LLEKAQAERLLR 490
Cdd:COG4717   171 ELAELQEELEELleqlslatEEELQDLAEELEELQQRLAE-------LEEELEEAQEELEELEEELeqLENELEAAALEE 243
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 491 ELADNRLTTVAEKSRVLQLEEELSLRRGEIEELQHCLLQSGPPPADHPEAAETLRLRERLLSASKEHQRDSTLLQDKYEH 570
Cdd:COG4717   244 RLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEE 323
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 571 MLKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTEN--MGLMDNWKSKLDSLASDHQKSLEDLKATLNsgpgaQQKEIG 648
Cdd:COG4717   324 LLAALGLPPDLSPEELLELLDRIEELQELLREAEELEeeLQLEELEQEIAALLAEAGVEDEEELRAALE-----QAEEYQ 398
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 649 ELKALVEgiKMEHQLELGNLQAKHDLETAmhgkEKEGLRQKLQEVQEELAGLQQhwreqleeqasqhrlELQEAQDQCRD 728
Cdd:COG4717   399 ELKEELE--ELEEQLEELLGELEELLEAL----DEEELEEELEELEEELEELEE---------------ELEELREELAE 457
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1907163864 729 AQLRAQELEGlDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERLR 785
Cdd:COG4717   458 LEAELEQLEE-DGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREER 513
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
394-756 2.04e-07

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 55.06  E-value: 2.04e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  394 EKEIALLKAQHEqyvaEAEEKLQRARLLVENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGE 473
Cdd:TIGR02168  224 ELELALLVLRLE----ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISR 299
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  474 LEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEELSLRRGEIEELQHCLLQSgppPADHPEAAETLRLRERLLSA 553
Cdd:TIGR02168  300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESL---EAELEELEAELEELESRLEE 376
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  554 SKEHqrdstllqdkyehmLKTYQTEVDKLRaanekyaQEVADLKAKVQQAttenmglmdnwKSKLDSLASDHQKSLEDLK 633
Cdd:TIGR02168  377 LEEQ--------------LETLRSKVAQLE-------LQIASLNNEIERL-----------EARLERLEDRRERLQQEIE 424
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  634 AtlnsgpgaqqkeigELKALVEGIKMEHQLELGNLQakhdletamhgKEKEGLRQKLQEVQEELaglqqhwrEQLEEQAS 713
Cdd:TIGR02168  425 E--------------LLKKLEEAELKELQAELEELE-----------EELEELQEELERLEEAL--------EELREELE 471
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|...
gi 1907163864  714 QHRLELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEFLKEQ 756
Cdd:TIGR02168  472 EAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKN 514
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
341-756 3.67e-07

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 54.17  E-value: 3.67e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 341 LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARL 420
Cdd:COG1196   328 LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE 407
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 421 LVENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTV 500
Cdd:COG1196   408 AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 501 AEKSRVLQLEEELSLRRGEIEELQHCLLQSGPPP---------------ADHPEAAETLRLRERL--------------- 550
Cdd:COG1196   488 EAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGlagavavligveaayEAALEAALAAALQNIVveddevaaaaieylk 567
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 551 ---------LSASKEHQRDSTLLQDKYEHMLKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTENMGLM--------DN 613
Cdd:COG1196   568 aakagratfLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRravtlagrLR 647
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 614 WKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKALVEGIKMEHQLELGNLQAKHDLETAMHGKEKEGLRQKLQEV 693
Cdd:COG1196   648 EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907163864 694 QEELAGLQQHWREQLEEQASQHRLE---------LQEAQDQCRDAQLRAQELEGLDV----EYRGQAQAIEFLKEQ 756
Cdd:COG1196   728 EQLEAEREELLEELLEEEELLEEEAleelpeppdLEELERELERLEREIEALGPVNLlaieEYEELEERYDFLSEQ 803
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
477-799 5.60e-07

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 53.48  E-value: 5.60e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 477 SLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEELSLRRgEIEELQhclLQSGPPPADHPEAAETLRLRERLlsaSKE 556
Cdd:COG3206    58 TLLVEPQSSDVLLSGLSSLSASDSPLETQIEILKSRPVLER-VVDKLN---LDEDPLGEEASREAAIERLRKNL---TVE 130
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 557 HQRDSTLLQDKYEH------------MLKTYQTE-----VDKLRAANEKYAQEVADLKAKVQQATT------ENMGLMDn 613
Cdd:COG3206   131 PVKGSNVIEISYTSpdpelaaavanaLAEAYLEQnlelrREEARKALEFLEEQLPELRKELEEAEAaleefrQKNGLVD- 209
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 614 wkskLDSLASDHQKSLEDLKATLNsgpgAQQKEIGELKALVEGIkmEHQLELGNLQAKHDLETAmhgkEKEGLRQKLQEV 693
Cdd:COG3206   210 ----LSEEAKLLLQQLSELESQLA----EARAELAEAEARLAAL--RAQLGSGPDALPELLQSP----VIQQLRAQLAEL 275
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 694 QEELAGLQQHWREQlEEQASQHRLELQEAQDQCRdaQLRAQELEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRA 773
Cdd:COG3206   276 EAELAELSARYTPN-HPDVIALRAQIAALRAQLQ--QEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAE 352
                         330       340
                  ....*....|....*....|....*.
gi 1907163864 774 EAQSRQEAERLREKLLVAENRLQAAE 799
Cdd:COG3206   353 LRRLEREVEVARELYESLLQRLEEAR 378
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
363-848 9.89e-07

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 52.87  E-value: 9.89e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  363 KEKQQHIEQLLAERDLERAEVAKATSHICEvekeiaLLKAQHEQYvAEAEEklQRARLL------------VENVRKEKV 430
Cdd:pfam01576   18 KERQQKAESELKELEKKHQQLCEEKNALQE------QLQAETELC-AEAEE--MRARLAarkqeleeilheLESRLEEEE 88
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  431 DLSNQLEEERRK----VEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRE--LADNRLttvAEKS 504
Cdd:pfam01576   89 ERSQQLQNEKKKmqqhIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKErkLLEERI---SEFT 165
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  505 RVLQLEEELSLRRGEIEELQHCLLQsgpppadhpEAAETLR----LRERLLSASKEHQRDSTLLQDKYEHMlktyQTEVD 580
Cdd:pfam01576  166 SNLAEEEEKAKSLSKLKNKHEAMIS---------DLEERLKkeekGRQELEKAKRKLEGESTDLQEQIAEL----QAQIA 232
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  581 KLRAANEKYAQEVADLKAKVQQATTENMGLMDNWKsKLDSLASDHQKSLE-------------------------DLKAT 635
Cdd:pfam01576  233 ELRAQLAKKEEELQAALARLEEETAQKNNALKKIR-ELEAQISELQEDLEseraarnkaekqrrdlgeelealktELEDT 311
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  636 LNSgPGAQQ-------KEIGELKALVEGIKMEHQLELGNLQAKH---------DLETAMHG-----KEKEGLRQKLQEVQ 694
Cdd:pfam01576  312 LDT-TAAQQelrskreQEVTELKKALEEETRSHEAQLQEMRQKHtqaleelteQLEQAKRNkanleKAKQALESENAELQ 390
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  695 EELAGLQQ------HWREQLEEQASQHRLELQEAQDQCRDAQLRAQ----ELEGLD-VEYRGQAQAIEFLKEQISLAEKK 763
Cdd:pfam01576  391 AELRTLQQakqdseHKRKKLEGQLQELQARLSESERQRAELAEKLSklqsELESVSsLLNEAEGKNIKLSKDVSSLESQL 470
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  764 MLDYEMLQRAEAQSRQEAERLREkLLVAENRLQ--------AAESLCSAQHSHVIESSDLSEETIRMKETVEGLQDKLNK 835
Cdd:pfam01576  471 QDTQELLQEETRQKLNLSTRLRQ-LEDERNSLQeqleeeeeAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKR 549
                          570
                   ....*....|...
gi 1907163864  836 RDKEVTALTSQMD 848
Cdd:pfam01576  550 LQRELEALTQQLE 562
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
359-788 1.70e-06

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 51.96  E-value: 1.70e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 359 QEALKEKQQHIEQLlAERDLErAEVAKATSHICEVEKEIALLKAQHEQyvaeAEEKLQRARLLVENVRKEKVDLSnQLEE 438
Cdd:PRK02224  186 RGSLDQLKAQIEEK-EEKDLH-ERLNGLESELAELDEEIERYEEQREQ----ARETRDEADEVLEEHEERREELE-TLEA 258
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 439 ErrkVEDLQFRVEEESITKGDLETQTQLEHARIGELEqslllekaqaERLLRELADNRLTTvAEKSRVLQLEEELSLRRG 518
Cdd:PRK02224  259 E---IEDLRETIAETEREREELAEEVRDLRERLEELE----------EERDDLLAEAGLDD-ADAEAVEARREELEDRDE 324
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 519 EIEE-LQHCLLQSGpppaDHPEAAETLRLR-ERLLSASKEHQRDSTLLQDKyehmLKTYQTEVDKLRAANEKYAQEVADL 596
Cdd:PRK02224  325 ELRDrLEECRVAAQ----AHNEEAESLREDaDDLEERAEELREEAAELESE----LEEAREAVEDRREEIEELEEEIEEL 396
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 597 KAKVQQATTEnmglMDNWKSKLDSLASDHQK---SLEDLKATLNSgpgaQQKEIGELKAL------------------VE 655
Cdd:PRK02224  397 RERFGDAPVD----LGNAEDFLEELREERDElreREAELEATLRT----ARERVEEAEALleagkcpecgqpvegsphVE 468
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 656 GI------KMEHQLELGNLQAKHD-----LETAMHGKEKEGLRQKLQEVQEELAGLQQHWREQLEE---QASQHRLELQE 721
Cdd:PRK02224  469 TIeedrerVEELEAELEDLEEEVEeveerLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEkreRAEELRERAAE 548
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907163864 722 AQDQCRDAQLRAQELEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKL 788
Cdd:PRK02224  549 LEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKR 615
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
359-784 1.74e-06

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 51.89  E-value: 1.74e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  359 QEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLVENVR---------KEK 429
Cdd:TIGR00618  437 QRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCplcgscihpNPA 516
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  430 VDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSllLEKAQAERLLRELADNRLTTVAEK-----S 504
Cdd:TIGR00618  517 RQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQ--MQEIQQSFSILTQCDNRSKEDIPNlqnitV 594
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  505 RVLQLEEELSLRRGEIEELQHCLLQSGPPPADHPEAAETLRLRERLLSASKE--HQRDSTLLQDKYEHML---KTYQTEV 579
Cdd:TIGR00618  595 RLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTalHALQLTLTQERVREHAlsiRVLPKEL 674
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  580 DKLRAANEKYAQEVADLKAKVQQATTENMGLMDNWKSKL---DSLASDHQKSLEDLKATLNSGPGAQQKEIGELKALVEg 656
Cdd:TIGR00618  675 LASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIeeyDREFNEIENASSSLGSDLAAREDALNQSLKELMHQAR- 753
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  657 IKMEHQLELGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLQQHWReQLEEQASQHRLE-LQEAQDQCrdaQLRAQE 735
Cdd:TIGR00618  754 TVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLK-TLEAEIGQEIPSdEDILNLQC---ETLVQE 829
                          410       420       430       440
                   ....*....|....*....|....*....|....*....|....*....
gi 1907163864  736 LEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERL 784
Cdd:TIGR00618  830 EEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKL 878
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
407-798 2.08e-06

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 51.88  E-value: 2.08e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  407 YVAEAEEKLQRARLLVEnVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLllekAQAE 486
Cdd:COG3096    273 YMRHANERRELSERALE-LRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDHLNLVQTAL----RQQE 347
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  487 RLLRELADnrlttvaeksrVLQLEEELSLRRGEIEELQHcllqsgpppadhpeaaETLRLRERLLSASKEHQRDSTLLQD 566
Cdd:COG3096    348 KIERYQED-----------LEELTERLEEQEEVVEEAAE----------------QLAEAEARLEAAEEEVDSLKSQLAD 400
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  567 kYEHMLKT-------YQTEVDKLRAAN----------EKYAQEVADLKAKVQQATTENMGLmdnwKSKL---DSLASDHQ 626
Cdd:COG3096    401 -YQQALDVqqtraiqYQQAVQALEKARalcglpdltpENAEDYLAAFRAKEQQATEEVLEL----EQKLsvaDAARRQFE 475
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  627 KSLEDLKA------TLNSGPGAQQkeigelkALVEGIKMEHQLE-LGNLQAK-HDLETAMHgkekegLRQKLQEVQEEL- 697
Cdd:COG3096    476 KAYELVCKiageveRSQAWQTARE-------LLRRYRSQQALAQrLQQLRAQlAELEQRLR------QQQNAERLLEEFc 542
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  698 --AGLQQHWREQLEEQASQHRLELQEAQDQCRDA-----QLRAQ--ELEGLDVEYRGQA-------QAIEFLKEQI--SL 759
Cdd:COG3096    543 qrIGQQLDAAEELEELLAELEAQLEELEEQAAEAveqrsELRQQleQLRARIKELAARApawlaaqDALERLREQSgeAL 622
                          410       420       430       440
                   ....*....|....*....|....*....|....*....|....
gi 1907163864  760 AEKKMLDYEMLQ-----RAEAQSRQEAERLREKLLVAENRLQAA 798
Cdd:COG3096    623 ADSQEVTAAMQQllereREATVERDELAARKQALESQIERLSQP 666
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
617-800 2.86e-06

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 50.92  E-value: 2.86e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 617 KLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKALVEGIKmehQLELGNLQAKHDLETAMHGKEKEGLRQKLQEVQEE 696
Cdd:COG4717    64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELE---ELEAELEELREELEKLEKLLQLLPLYQELEALEAE 140
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 697 LAGLQQHWreqleEQASQHRLELQEAQDQCRDAQLRAQELEgldveyrgqaQAIEFLKEQISLAEKKML-----DYEMLQ 771
Cdd:COG4717   141 LAELPERL-----EELEERLEELRELEEELEELEAELAELQ----------EELEELLEQLSLATEEELqdlaeELEELQ 205
                         170       180
                  ....*....|....*....|....*....
gi 1907163864 772 RAEAQSRQEAERLREKLLVAENRLQAAES 800
Cdd:COG4717   206 QRLAELEEELEEAQEELEELEEELEQLEN 234
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
412-855 3.09e-06

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 51.27  E-value: 3.09e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  412 EEKLQRARLLVENVRKEKVDlsNQLEEERRKVEDLQFRVEEESitkgdletqtQLEHARIGELEQSLLlekaQAERLLRE 491
Cdd:pfam15921   58 EVELDSPRKIIAYPGKEHIE--RVLEEYSHQVKDLQRRLNESN----------ELHEKQKFYLRQSVI----DLQTKLQE 121
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  492 LADNRLTTVAEKSRVLQLEEELslrRGEIEELQHCLlqsgpppadhpEAAETLRlrerllsaskehqrdstllqdkyEHM 571
Cdd:pfam15921  122 MQMERDAMADIRRRESQSQEDL---RNQLQNTVHEL-----------EAAKCLK-----------------------EDM 164
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  572 LKTYQTEVDKLRA---ANEKYAQEVADLKAKVQQATTENMGLMDNWKS-KLDSLASDHQKSLEDLKATLNSGPGAQQKEI 647
Cdd:pfam15921  165 LEDSNTQIEQLRKmmlSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTmHFRSLGSAISKILRELDTEISYLKGRIFPVE 244
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  648 GELKAL-------VEGIKMEHQLELGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLQQHWREQ----------LEE 710
Cdd:pfam15921  245 DQLEALksesqnkIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQnsmymrqlsdLES 324
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  711 QASQHRLELQEAQDQCRDaqlraqelegldveyrgqaqAIEFLKEQISLAEKKMLDyemlQRAEA-QSRQEAERLREKLl 789
Cdd:pfam15921  325 TVSQLRSELREAKRMYED--------------------KIEELEKQLVLANSELTE----ARTERdQFSQESGNLDDQL- 379
                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907163864  790 vaenrlqaaESLCSAQHSHVIESSDLSEETIRMKE-------TVEGLQDKLNKRDKEVTALTSQMDMLRAQSQ 855
Cdd:pfam15921  380 ---------QKLLADLHKREKELSLEKEQNKRLWDrdtgnsiTIDHLRRELDDRNMEVQRLEALLKAMKSECQ 443
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
341-803 4.16e-06

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 50.45  E-value: 4.16e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 341 LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQY--VAEAEEKLQRA 418
Cdd:PRK03918  298 LSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYeeAKAKKEELERL 377
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 419 RLLVENVRKEKVDlsNQLEEERRKVEDLQFRVEEESITKGDLETqtqlehaRIGELEQSLL-LEKAQAE-----RLLREl 492
Cdd:PRK03918  378 KKRLTGLTPEKLE--KELEELEKAKEEIEEEISKITARIGELKK-------EIKELKKAIEeLKKAKGKcpvcgRELTE- 447
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 493 aDNRLTTVAE--------KSRVLQLEEELSLRRGEIEELQHCLLQSGPPPADHPEAAETLRLRERLLSASKEHQRDSTLL 564
Cdd:PRK03918  448 -EHRKELLEEytaelkriEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEE 526
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 565 QDKYEHMLKTYQTEVDKLraanEKYAQEVADLKAKVQQATTENMGLMDNWKSKLDSLASDHQKSLEDLKatlnsgpgaqq 644
Cdd:PRK03918  527 YEKLKEKLIKLKGEIKSL----KKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELE----------- 591
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 645 KEIGELKAL----VEGIKMEHQLE-LGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLQQHWREQLEEQASQHRLEL 719
Cdd:PRK03918  592 ERLKELEPFyneyLELKDAEKELErEEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLEL 671
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 720 QEAQdqcrdAQLRAqELEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAeaqsRQEAERLREKL-----LVAENR 794
Cdd:PRK03918  672 SREL-----AGLRA-ELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKA----LERVEELREKVkkykaLLKERA 741

                  ....*....
gi 1907163864 795 LQAAESLCS 803
Cdd:PRK03918  742 LSKVGEIAS 750
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
340-744 6.54e-06

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 50.11  E-value: 6.54e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 340 LLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDL---ERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQ 416
Cdd:pfam05483 381 IITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKlldEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLT 460
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 417 RARLLVENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADnr 496
Cdd:pfam05483 461 AIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIEN-- 538
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 497 lttvaeksrvlqLEEELSLRRGEIEELQHCLLQSGpppadhpeaaETLRLRerlLSASKEHQRDSTLLQDKYEHMLKTYQ 576
Cdd:pfam05483 539 ------------LEEKEMNLRDELESVREEFIQKG----------DEVKCK---LDKSEENARSIEYEVLKKEKQMKILE 593
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 577 TEVDKLRAANEKYAQEVADL----KAKVQQATTENMGL-------------MDNWKSKLDSLASDHQKSLEDLKATLNSG 639
Cdd:pfam05483 594 NKCNNLKKQIENKNKNIEELhqenKALKKKGSAENKQLnayeikvnkleleLASAKQKFEEIIDNYQKEIEDKKISEEKL 673
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 640 PGaqqkEIGELKALV-EGIKMEHQLELgNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLQQHWREQ------LEEQA 712
Cdd:pfam05483 674 LE----EVEKAKAIAdEAVKLQKEIDK-RCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQssakaaLEIEL 748
                         410       420       430
                  ....*....|....*....|....*....|..
gi 1907163864 713 SQHRLELQEAQDQCrdaQLRAQELEGLDVEYR 744
Cdd:pfam05483 749 SNIKAELLSLKKQL---EIEKEEKEKLKMEAK 777
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
340-855 8.59e-06

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 49.72  E-value: 8.59e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 340 LLTETSSRYARKISGTTALQEALKEK----QQHIEQL-LAERDLE-RAEVAKATSH--ICEVEKEIALLKAQHEQYVAEA 411
Cdd:pfam05483 159 LLKETCARSAEKTKKYEYEREETRQVymdlNNNIEKMiLAFEELRvQAENARLEMHfkLKEDHEKIQHLEEEYKKEINDK 238
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 412 EEklQRARLLVENVRKEKV--DLSNQLEEERRKVEdlqfrveeesitkgDLETQTQLEHARIGELEQslllekaQAERLL 489
Cdd:pfam05483 239 EK--QVSLLLIQITEKENKmkDLTFLLEESRDKAN--------------QLEEKTKLQDENLKELIE-------KKDHLT 295
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 490 RELADNRLTTVAEKSRVLQLEEELSLRRGEIEELQhcllqsgpppadhpEAAETlrLRERLLSASKEHQRDSTLLQDKYE 569
Cdd:pfam05483 296 KELEDIKMSLQRSMSTQKALEEDLQIATKTICQLT--------------EEKEA--QMEELNKAKAAHSFVVTEFEATTC 359
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 570 HMLKTYQTEVDKLraanEKYAQEVADLKAKVQQATTEnmglmdnwKSKLDSLASDHQKSLEDLKATLnsgpGAQQK---E 646
Cdd:pfam05483 360 SLEELLRTEQQRL----EKNEDQLKIITMELQKKSSE--------LEEMTKFKNNKEVELEELKKIL----AEDEKlldE 423
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 647 IGELKALVEGIKMEHQLELGNLQAK----HDLETAMHGKeKEGLRQKLQEVQEELAGLQQHWREQLEEQASQHRLELQEA 722
Cdd:pfam05483 424 KKQFEKIAEELKGKEQELIFLLQARekeiHDLEIQLTAI-KTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENK 502
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 723 QdqcrdaqlRAQELEGLDVEYRGQAQAIEFLKEQislaEKKML-DYEMLQRAEAQSRQEAERLREKLlvaenRLQAAESL 801
Cdd:pfam05483 503 E--------LTQEASDMTLELKKHQEDIINCKKQ----EERMLkQIENLEEKEMNLRDELESVREEF-----IQKGDEVK 565
                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1907163864 802 CSAQHSHViESSDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQSQ 855
Cdd:pfam05483 566 CKLDKSEE-NARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENK 618
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
357-524 1.35e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 48.22  E-value: 1.35e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 357 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQheqyVAEAEEKLQRARLLVENVRKEKVDLSNQL 436
Cdd:COG4942    24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR----IRALEQELAALEAELAELEKEIAELRAEL 99
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 437 EEERRKVEDL---QFRVEEESITKGDLETQTQLEHARIGELEQSLLLE-KAQAERL---LRELADNRLTTVAEKSRVLQL 509
Cdd:COG4942   100 EAQKEELAELlraLYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPArREQAEELradLAELAALRAELEAERAELEAL 179
                         170
                  ....*....|....*
gi 1907163864 510 EEELSLRRGEIEELQ 524
Cdd:COG4942   180 LAELEEERAALEALK 194
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
350-846 2.09e-05

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 48.18  E-value: 2.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 350 RKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKAtshicevekeiallKAQHEQYVAEAEEKLQRarlLVENVRKEK 429
Cdd:pfam05483 307 RSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKA--------------KAAHSFVVTEFEATTCS---LEELLRTEQ 369
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 430 VDLSNQLEEERRKVEDLQFRVEE-ESITKGDLETQTQLEHAR--IGElEQSLLLEKAQAERLLRELadnrlttvaeKSRV 506
Cdd:pfam05483 370 QRLEKNEDQLKIITMELQKKSSElEEMTKFKNNKEVELEELKkiLAE-DEKLLDEKKQFEKIAEEL----------KGKE 438
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 507 LQLEEELSLRRGEIEELQHCLLQSGPPPADHPEAAETLRL---RERLLSASKEHQRDSTLLQDK--------YEHMLKTY 575
Cdd:pfam05483 439 QELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTeleKEKLKNIELTAHCDKLLLENKeltqeasdMTLELKKH 518
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 576 QTEVDKLRAANEKYAQEVADLKAKVQQATTENMGLMDNWKSKLDSLASDHQKSLEDLKaTLNSGPGAQQKEIGELKALVE 655
Cdd:pfam05483 519 QEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENAR-SIEYEVLKKEKQMKILENKCN 597
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 656 GIKMEHQLELGNLQAKHDLETAMHGKEKEGLRQ------KLQEVQEELAGLQQHWREQL---EEQASQHRLELQEAQDQC 726
Cdd:pfam05483 598 NLKKQIENKNKNIEELHQENKALKKKGSAENKQlnayeiKVNKLELELASAKQKFEEIIdnyQKEIEDKKISEEKLLEEV 677
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 727 RDAQLRAQELEGLDVEYRGQAQaiEFLKEQISLAEKKMLDYEMLqraeaqsrqeAERLREKLLVAENRLQAAESLCSAQH 806
Cdd:pfam05483 678 EKAKAIADEAVKLQKEIDKRCQ--HKIAEMVALMEKHKHQYDKI----------IEERDSELGLYKNKEQEQSSAKAALE 745
                         490       500       510       520
                  ....*....|....*....|....*....|....*....|...
gi 1907163864 807 shvIESSDLSEETIRMKETVE---GLQDKLNKRDKEVTALTSQ 846
Cdd:pfam05483 746 ---IELSNIKAELLSLKKQLEiekEEKEKLKMEAKENTAILKD 785
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
457-806 2.32e-05

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 48.30  E-value: 2.32e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  457 KGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTT--VAEKSRVLQLEEELSLRRGEIEELQHCllqsgppp 534
Cdd:pfam12128  192 EGKFRDVKSMIVAILEDDGVVPPKSRLNRQQVEHWIRDIQAIAgiMKIRPEFTKLQQEFNTLESAELRLSHL-------- 263
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  535 adHPEAAETLRLRERLLSASKEHQRDSTLLQDKYEHMLKTYQTEVD-KLRAANEKYAQEVADLKAKVQQATTENMGLMDN 613
Cdd:pfam12128  264 --HFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNgELSAADAAVAKDRSELEALEDQHGAFLDADIET 341
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  614 WKSKLDSLASdHQKSLEDLKATLNSGPGAQQKEIGELKALVEGIKMEHQLELGNLQAKHDletamhgKEKEGLRQKLQEV 693
Cdd:pfam12128  342 AAADQEQLPS-WQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLA-------KIREARDRQLAVA 413
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  694 QEELAGLQQHWREQLE-------EQASQHRLELQEAQDQCRDAQLRAQELEGLdveyRGQAQAIEFLKEQISLAEKKMLD 766
Cdd:pfam12128  414 EDDLQALESELREQLEagklefnEEEYRLKSRLGELKLRLNQATATPELLLQL----ENFDERIERAREEQEAANAEVER 489
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|
gi 1907163864  767 yemLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSAQH 806
Cdd:pfam12128  490 ---LQSELRQARKRRDQASEALRQASRRLEERQSALDELE 526
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
358-703 2.36e-05

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 48.09  E-value: 2.36e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 358 LQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLL---VENVRKEKVDLSN 434
Cdd:TIGR04523 361 KQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLekeIERLKETIIKNNS 440
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 435 QLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQ-----------------SLLLEKAQAERLLRELADN-- 495
Cdd:TIGR04523 441 EIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQnleqkqkelkskekelkKLNEEKKELEEKVKDLTKKis 520
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 496 RLTTVAEK--SRVLQLEEELSLRRGEIEELQHCLlqsgpppaDHPEAAETLRLRERLLSASKEHQRDSTLLQDKYEHMLK 573
Cdd:TIGR04523 521 SLKEKIEKleSEKKEKESKISDLEDELNKDDFEL--------KKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELID 592
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 574 TYQTEVDKLRAANEKYAQEVADLKAKVQQATTENMGL---MDNWKSKLDSLASDHQKSLEDLKATLNSGPGAqQKEIGEL 650
Cdd:TIGR04523 593 QKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLssiIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEI-IKKIKES 671
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1907163864 651 KALVEGIK--MEHQLELGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLQQH 703
Cdd:TIGR04523 672 KTKIDDIIelMKDWLKELSLHYKKYITRMIRIKDLPKLEEKYKEIEKELKKLDEF 726
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
674-855 2.89e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 48.01  E-value: 2.89e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 674 LETAMHGKEKEGLRQKLQEVQEELAGLQQHwREQLEEQASQHRLELQEAQDQCRDAQLRAQELEGLdvEYRGQAQAIEFL 753
Cdd:COG1196   225 LEAELLLLKLRELEAELEELEAELEELEAE-LEELEAELAELEAELEELRLELEELELELEEAQAE--EYELLAELARLE 301
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 754 KEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSAQHSHVIESSDLSEETIRMKETVEGLQDKL 833
Cdd:COG1196   302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL 381
                         170       180
                  ....*....|....*....|..
gi 1907163864 834 NKRDKEVTALTSQMDMLRAQSQ 855
Cdd:COG1196   382 EELAEELLEALRAAAELAAQLE 403
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
689-855 2.98e-05

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 46.46  E-value: 2.98e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 689 KLQEVQEELAGLQqHWREQLEEQASQHRLELQEAQDQCRDAQlraQELEGLDVEYRGQAQAIEFLKEQISLAEKKML--- 765
Cdd:COG1579    11 DLQELDSELDRLE-HRLKELPAELAELEDELAALEARLEAAK---TELEDLEKEIKRLELEIEEVEARIKKYEEQLGnvr 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 766 ---DYEMLQRAEAQSRQEAERLREKLLVAENRLQAAESlcsaqhshviessDLSEETIRMKETVEGLQDKLNKRDKEVTA 842
Cdd:COG1579    87 nnkEYEALQKEIESLKRRISDLEDEILELMERIEELEE-------------ELAELEAELAELEAELEEKKAELDEELAE 153
                         170
                  ....*....|...
gi 1907163864 843 LTSQMDMLRAQSQ 855
Cdd:COG1579   154 LEAELEELEAERE 166
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
346-853 3.55e-05

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 47.75  E-value: 3.55e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 346 SRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEqyvaEAEEKLQRARLLVENV 425
Cdd:PRK03918  179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKE----EIEELEKELESLEGSK 254
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 426 RKEKVDLSN---QLEEERRKVEDLQFRVEEESITKGDLEtqtqlEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAE 502
Cdd:PRK03918  255 RKLEEKIREleeRIEELKKEIEELEEKVKELKELKEKAE-----EYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEER 329
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 503 KSRVLQLEEELSLRRGEIEELQHcllqsgpppaDHPEAAETLRLRERLLSASKEHQRDSTLLQDKYEHMLKtyqTEVDKL 582
Cdd:PRK03918  330 IKELEEKEERLEELKKKLKELEK----------RLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLE---KELEEL 396
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 583 RAANEKYAQEVADLKAKvqqattenmglmdnwKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKalvEGIKMEHQ 662
Cdd:PRK03918  397 EKAKEEIEEEISKITAR---------------IGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHR---KELLEEYT 458
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 663 LELGNLQAkhdlETAMHGKEKEGLRQKLQEVQEELAGLQQHWR--------EQLEEQASQHRLElqEAQDQCRDAQLRAQ 734
Cdd:PRK03918  459 AELKRIEK----ELKEIEEKERKLRKELRELEKVLKKESELIKlkelaeqlKELEEKLKKYNLE--ELEKKAEEYEKLKE 532
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 735 ELEGLDVEYRGQAQAIEFLKEqisLAEKKMLDYEMLQRAEAQSRQEAERLREK----LLVAENRLQAAESLcsaqHSHVI 810
Cdd:PRK03918  533 KLIKLKGEIKSLKKELEKLEE---LKKKLAELEKKLDELEEELAELLKELEELgfesVEELEERLKELEPF----YNEYL 605
                         490       500       510       520
                  ....*....|....*....|....*....|....*....|...
gi 1907163864 811 ESSDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQ 853
Cdd:PRK03918  606 ELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKE 648
MAD pfam05557
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ...
349-795 4.08e-05

Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.


Pssm-ID: 461677 [Multi-domain]  Cd Length: 660  Bit Score: 47.43  E-value: 4.08e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 349 ARKISGTTALQEALKE-KQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLK--AQHEQYVAEAEEKLQ----RARLL 421
Cdd:pfam05557   2 AELIESKARLSQLQNEkKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKriRLLEKREAEAEEALReqaeLNRLK 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 422 VENV------RKEKVD-----------LSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQslllEKAQ 484
Cdd:pfam05557  82 KKYLealnkkLNEKESqladareviscLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQ----LRQN 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 485 AERLLRELADNRLttvaeksRVLQLEEELSLRRGEIEELQHCllqsgppPADHPEAAETLRLRERLLSASK---EHQRDS 561
Cdd:pfam05557 158 LEKQQSSLAEAEQ-------RIKELEFEIQSQEQDSEIVKNS-------KSELARIPELEKELERLREHNKhlnENIENK 223
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 562 TLLQDKYEHM------LKTYQTEVDKLRAANEKYAQEVADLKaKVQQATTENMGLMDNWKSKLDSLASDhQKSLEDLKAT 635
Cdd:pfam05557 224 LLLKEEVEDLkrklerEEKYREEAATLELEKEKLEQELQSWV-KLAQDTGLNLRSPEDLSRRIEQLQQR-EIVLKEENSS 301
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 636 LNSGPGAQQKEIGEL---------KALVEGIKMEHQLELGN-LQAKHDLETamhgKEKEGLRQKLQEVQEELAglqqhwr 705
Cdd:pfam05557 302 LTSSARQLEKARRELeqelaqylkKIEDLNKKLKRHKALVRrLQRRVLLLT----KERDGYRAILESYDKELT------- 370
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 706 eqLEEQASQHRLELQEAQDQCRDAQLRAQELE-GLDV------EYRGQAQAIE----FLKEQISLAEKKML--DYEMLQR 772
Cdd:pfam05557 371 --MSNYSPQLLERIEEAEDMTQKMQAHNEEMEaQLSVaeeelgGYKQQAQTLErelqALRQQESLADPSYSkeEVDSLRR 448
                         490       500
                  ....*....|....*....|...
gi 1907163864 773 AEAQSRQEAERLREKLLVAENRL 795
Cdd:pfam05557 449 KLETLELERQRLREQKNELEMEL 471
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
334-843 4.25e-05

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 47.37  E-value: 4.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 334 RPSRSGLLTETSSRYAR------KISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQY 407
Cdd:PRK03918  216 LPELREELEKLEKEVKEleelkeEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEY 295
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 408 VAEAEEKLQRARLLvENVRKEKVDLSNQLEEERRKVEDLQFRVEE-ESITKGDLETQTQLEharigELEQSLLL------ 480
Cdd:PRK03918  296 IKLSEFYEEYLDEL-REIEKRLSRLEEEINGIEERIKELEEKEERlEELKKKLKELEKRLE-----ELEERHELyeeaka 369
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 481 EKAQAERLLRELADNRLTTVAEK-----SRVLQLEEELSLRRGEIEELQHcllqsgpppadhpEAAETLRLRERLLSASK 555
Cdd:PRK03918  370 KKEELERLKKRLTGLTPEKLEKEleeleKAKEEIEEEISKITARIGELKK-------------EIKELKKAIEELKKAKG 436
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 556 EHQRDSTLLQDKYE-HMLKTYQTEVDKLRAANEKYAQEVADLKAKVQQatTENMGLMDNWKSKLDSLASDHQKSLEDLKA 634
Cdd:PRK03918  437 KCPVCGRELTEEHRkELLEEYTAELKRIEKELKEIEEKERKLRKELRE--LEKVLKKESELIKLKELAEQLKELEEKLKK 514
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 635 TLNSGPGAQQKEIGELKALVEGIKMEHQLELGNLQAKHDLEtamhgKEKEGLRQKLQEVQEELAGLQQhwreQLEEQASQ 714
Cdd:PRK03918  515 YNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELK-----KKLAELEKKLDELEEELAELLK----ELEELGFE 585
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 715 HRLELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYE-MLQRAEAQ--------SRQEAERLR 785
Cdd:PRK03918  586 SVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEkRLEELRKEleelekkySEEEYEELR 665
                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907163864 786 EKLLVAENRLQAAESLCSAQHSHV--IESS--DLSEETIRMKETVEGLQdKLNKRDKEVTAL 843
Cdd:PRK03918  666 EEYLELSRELAGLRAELEELEKRReeIKKTleKLKEELEEREKAKKELE-KLEKALERVEEL 726
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
659-848 5.20e-05

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 45.69  E-value: 5.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 659 MEHQLELGNLQAKhDLETAMHGKEKEGLRQKLQEVQEELAGLQQHwREQLEEQASQHRLELQEAQDQCRDAQLRAQELEG 738
Cdd:COG1579     3 PEDLRALLDLQEL-DSELDRLEHRLKELPAELAELEDELAALEAR-LEAAKTELEDLEKEIKRLELEIEEVEARIKKYEE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 739 -LDV-----EYRGQAQAIEFLKEQISLAEKKMLDYEMlqraeaqsrqEAERLREKLLVAENRLQAAEslcsaqhshvies 812
Cdd:COG1579    81 qLGNvrnnkEYEALQKEIESLKRRISDLEDEILELME----------RIEELEEELAELEAELAELE------------- 137
                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1907163864 813 SDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMD 848
Cdd:COG1579   138 AELEEKKAELDEELAELEAELEELEAEREELAAKIP 173
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
358-523 5.44e-05

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 45.69  E-value: 5.44e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 358 LQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIallkAQHEQYVAEAEEKLQRARLLVENVRKEK--VDLSNQ 435
Cdd:COG1579    22 LEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEI----KRLELEIEEVEARIKKYEEQLGNVRNNKeyEALQKE 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 436 LEEERRKVEDLqfrveEESItkgdLETQTQLEHAR--IGELEQSLLLEKAQAERLLRELadnrlttvaeKSRVLQLEEEL 513
Cdd:COG1579    98 IESLKRRISDL-----EDEI----LELMERIEELEeeLAELEAELAELEAELEEKKAEL----------DEELAELEAEL 158
                         170
                  ....*....|
gi 1907163864 514 SLRRGEIEEL 523
Cdd:COG1579   159 EELEAEREEL 168
YqiK COG2268
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
379-511 5.71e-05

Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];


Pssm-ID: 441869 [Multi-domain]  Cd Length: 439  Bit Score: 46.40  E-value: 5.71e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 379 ERAEVAKAtshicEVEKEIALLKAQHEQYVAEAEEKLQRARLLVENVRKEKvDLSNQLEEERRKVEDLQFR----VEEES 454
Cdd:COG2268   199 RDARIAEA-----EAERETEIAIAQANREAEEAELEQEREIETARIAEAEA-ELAKKKAEERREAETARAEaeaaYEIAE 272
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1907163864 455 ITKgDLETQTQLEharIGELEQSLLLEKAQAERLLREL-ADNRLTTVAEKSRVLQLEE 511
Cdd:COG2268   273 ANA-EREVQRQLE---IAEREREIELQEKEAEREEAELeADVRKPAEAEKQAAEAEAE 326
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
403-799 6.35e-05

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 46.66  E-value: 6.35e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 403 QHEQYVAEAEEKLQRARLLVENVRKEKVDLSNQLeEERRKVEdlqfrvEEESITKGDLETQTQL--EHARIGeLEQSLLL 480
Cdd:pfam17380 279 QHQKAVSERQQQEKFEKMEQERLRQEKEEKAREV-ERRRKLE------EAEKARQAEMDRQAAIyaEQERMA-MEREREL 350
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 481 EKAQAERLLRELADNRLTTVA-EKSRVLQLeEELSLRRGEIEElqhcllqsgpppadhpeaaetlRLRERLlsaskEHQR 559
Cdd:pfam17380 351 ERIRQEERKRELERIRQEEIAmEISRMREL-ERLQMERQQKNE----------------------RVRQEL-----EAAR 402
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 560 DSTLLQDKYEHMLKTYQTEVDKLRAANEKYAQEvadlkakvqqattenmglmdnwksKLDSLASDHQKSLEDLKatlnsg 639
Cdd:pfam17380 403 KVKILEEERQRKIQQQKVEMEQIRAEQEEARQR------------------------EVRRLEEERAREMERVR------ 452
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 640 pgaqqkeigelkalVEGIKMEHQLELgnlqakhdletaMHGKEKEGLRQKLQ--EVQEELAGLQQHWREQLEEQASQHRL 717
Cdd:pfam17380 453 --------------LEEQERQQQVER------------LRQQEEERKRKKLEleKEKRDRKRAEEQRRKILEKELEERKQ 506
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 718 ELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEA-ERLREKL-LVAENRL 795
Cdd:pfam17380 507 AMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAmEREREMMrQIVESEK 586

                  ....
gi 1907163864 796 QAAE 799
Cdd:pfam17380 587 ARAE 590
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
362-846 7.08e-05

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 46.55  E-value: 7.08e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 362 LKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEqyvaeaEEKLQRARLLVENVRKEK--VDLSNQLEEE 439
Cdd:TIGR04523  91 LKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKK------ENKKNIDKFLTEIKKKEKelEKLNNKYNDL 164
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 440 RRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAER---LLRELADnrlttvaEKSRVLQLEEELSLR 516
Cdd:TIGR04523 165 KKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKnksLESQISE-------LKKQNNQLKDNIEKK 237
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 517 RGEIEELQhcllqsgpppadhpeaAETLRLRERLLSASKEHQRDSTLLQDKyEHMLKTYQTEVDKLRAANEKYAQEVADL 596
Cdd:TIGR04523 238 QQEINEKT----------------TEISNTQTQLNQLKDEQNKIKKQLSEK-QKELEQNNKKIKELEKQLNQLKSEISDL 300
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 597 KAKVQQattenmglmdNWKSKLDSLASDHQKSLEDLKATLNSgpgaQQKEIGELKALVEGIKMEhqlelgnlqaKHDLET 676
Cdd:TIGR04523 301 NNQKEQ----------DWNKELKSELKNQEKKLEEIQNQISQ----NNKIISQLNEQISQLKKE----------LTNSES 356
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 677 AMHGKEKEgLRQKLQEVQEELAGLQQHWRE--QLEEQASQHRLELQEAQDQcrdAQLRAQELEGLDVEYRGQAQAIEFLK 754
Cdd:TIGR04523 357 ENSEKQRE-LEEKQNEIEKLKKENQSYKQEikNLESQINDLESKIQNQEKL---NQQKDEQIKKLQQEKELLEKEIERLK 432
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 755 EQISlaekkmldyemlqraeaQSRQEAERLREKLLVAENRLQAAESLCSAQHSHViesSDLSEETIRMKETVEGLQDKLN 834
Cdd:TIGR04523 433 ETII-----------------KNNSEIKDLTNQDSVKELIIKNLDNTRESLETQL---KVLSRSINKIKQNLEQKQKELK 492
                         490
                  ....*....|..
gi 1907163864 835 KRDKEVTALTSQ 846
Cdd:TIGR04523 493 SKEKELKKLNEE 504
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
679-846 1.26e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 45.68  E-value: 1.26e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  679 HGKEKEGLRQKLQEVQEELAGLQqHWREQ-----LEEQASQHRLELQEAQDQCRDAQLRAQELEGLDVEYRGQ-----AQ 748
Cdd:COG4913    260 LAERYAAARERLAELEYLRAALR-LWFAQrrlelLEAELEELRAELARLEAELERLEARLDALREELDELEAQirgngGD 338
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  749 AIEFLKEQISLAEKKmldYEMLQRAEAQSRQEAERLREKLL-----VAENRLQAAESLCSAQhshvIESSDLSEETIRMK 823
Cdd:COG4913    339 RLEQLEREIERLERE---LEERERRRARLEALLAALGLPLPasaeeFAALRAEAAALLEALE----EELEALEEALAEAE 411
                          170       180
                   ....*....|....*....|...
gi 1907163864  824 ETVEGLQDKLNKRDKEVTALTSQ 846
Cdd:COG4913    412 AALRDLRRELRELEAEIASLERR 434
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
361-817 1.39e-04

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 45.81  E-value: 1.39e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  361 ALKEKQQHIEQLLAERDLERAEVAKATshicevEKEIALLKAQHEQYVAEAEEKLQRARLLVENVRKEKVDLSNQLEEER 440
Cdd:TIGR00606  273 ALKSRKKQMEKDNSELELKMEKVFQGT------DEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELL 346
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  441 RKVEDLQFRVE--EESITKGDLETQTQLEHARIGELEQSLLLEKA--QAERLLRELADNRLTTVAEKSRVLQLEEELSlr 516
Cdd:TIGR00606  347 VEQGRLQLQADrhQEHIRARDSLIQSLATRLELDGFERGPFSERQikNFHTLVIERQEDEAKTAAQLCADLQSKERLK-- 424
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  517 rgeieelqhcllqsgpppadhpeaaetlrlrerllsaskehQRDSTLLQDKYEHMLKTYQTEVDKLraanEKYAQEVADL 596
Cdd:TIGR00606  425 -----------------------------------------QEQADEIRDEKKGLGRTIELKKEIL----EKKQEELKFV 459
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  597 KAKVQQATtenmGLMDNWKSKLDSLasdhQKSLEDL-KATLNSGPGAQQKEIGELKalvegikmEHQLELGNLQAKHDLE 675
Cdd:TIGR00606  460 IKELQQLE----GSSDRILELDQEL----RKAERELsKAEKNSLTETLKKEVKSLQ--------NEKADLDRKLRKLDQE 523
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  676 TAMHGKEKEGLRQKLQEVQEELAGLQQ-------------------HWREQLEEQASQHRLELQEAQDQCRDAQLRAQEL 736
Cdd:TIGR00606  524 MEQLNHHTTTRTQMEMLTKDKMDKDEQirkiksrhsdeltsllgyfPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASL 603
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  737 EGLDVEYRGQAQAIEflkEQISLAEKKMLDYEMLQRAEAqsrqEAERLREKLLVAENRLQAAESLCSAQHSHVIESSDLS 816
Cdd:TIGR00606  604 EQNKNHINNELESKE---EQLSSYEDKLFDVCGSQDEES----DLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDEN 676

                   .
gi 1907163864  817 E 817
Cdd:TIGR00606  677 Q 677
YqiK COG2268
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
356-513 1.77e-04

Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];


Pssm-ID: 441869 [Multi-domain]  Cd Length: 439  Bit Score: 44.86  E-value: 1.77e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 356 TALQEALKEKQQHIEQLLAERDLERAEVAKATSHIcEVEKEIALLKAQHEQYVAEAEEKLQRAR------LLVENVRKEK 429
Cdd:COG2268   212 TEIAIAQANREAEEAELEQEREIETARIAEAEAEL-AKKKAEERREAETARAEAEAAYEIAEANaerevqRQLEIAERER 290
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 430 VDLSNQLEEERRKVEdlqfrVEEESITKGDLETQTQLEHARiGELEQSLLLEKAQAE--RLLRElADNRLTTVAEKSRVL 507
Cdd:COG2268   291 EIELQEKEAEREEAE-----LEADVRKPAEAEKQAAEAEAE-AEAEAIRAKGLAEAEgkRALAE-AWNKLGDAAILLMLI 363

                  ....*.
gi 1907163864 508 QLEEEL 513
Cdd:COG2268   364 EKLPEI 369
HMMR_N pfam15905
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ...
341-524 2.88e-04

Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.


Pssm-ID: 464932 [Multi-domain]  Cd Length: 329  Bit Score: 44.03  E-value: 2.88e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 341 LTETSSRYARKISGTTALQEALKEKQQhieqlLAERDLE--RAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEkLQRA 418
Cdd:pfam15905 161 LMKLRNKLEAKMKEVMAKQEGMEGKLQ-----VTQKNLEhsKGKVAQLEEKLVSTEKEKIEEKSETEKLLEYITE-LSCV 234
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 419 RLLVENVRKEKVDLSNQLEEERRKVEDLQFRVEEEsitKGDLETQTQLEHARIGELEQSLllekaqaERLLRELADNRLT 498
Cdd:pfam15905 235 SEQVEKYKLDIAQLEELLKEKNDEIESLKQSLEEK---EQELSKQIKDLNEKCKLLESEK-------EELLREYEEKEQT 304
                         170       180
                  ....*....|....*....|....*.
gi 1907163864 499 TVAEksrVLQLEEELSLRRGEIEELQ 524
Cdd:pfam15905 305 LNAE---LEELKEKLTLEEQEHQKLQ 327
Filament pfam00038
Intermediate filament protein;
481-796 3.31e-04

Intermediate filament protein;


Pssm-ID: 459643 [Multi-domain]  Cd Length: 313  Bit Score: 43.76  E-value: 3.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 481 EKAQaerlLRELaDNRLTTVAEKSRvlQLEEELSLRRGEIEELQHcllQSGPPPADHPEAAE-TLR-LRERLLSASKEHQ 558
Cdd:pfam00038   2 EKEQ----LQEL-NDRLASYIDKVR--FLEQQNKLLETKISELRQ---KKGAEPSRLYSLYEkEIEdLRRQLDTLTVERA 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 559 R---DSTLLQDKYEHMLKTYQTEVDKLRAANEkyaqEVADLKAKVQQATTENMGLmdnwKSKLDSLasdhqksledlkat 635
Cdd:pfam00038  72 RlqlELDNLRLAAEDFRQKYEDELNLRTSAEN----DLVGLRKDLDEATLARVDL----EAKIESL-------------- 129
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 636 lnsgpgaqQKEIGELKalvegikMEHQLELGNLQAKHDLETA---MHGKEKEGLRQKLQEVQEELAGLQQHWREQLEEQA 712
Cdd:pfam00038 130 --------KEELAFLK-------KNHEEEVRELQAQVSDTQVnveMDAARKLDLTSALAEIRAQYEEIAAKNREEAEEWY 194
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 713 SQHRLELQEAQDQCRDAqLRAQELEGLdvEYRGQAQAIEFLKEQIslaeKKMLDYEMLQRAEAQSRQEAER--LREKLLV 790
Cdd:pfam00038 195 QSKLEELQQAAARNGDA-LRSAKEEIT--ELRRTIQSLEIELQSL----KKQKASLERQLAETEERYELQLadYQELISE 267

                  ....*.
gi 1907163864 791 AENRLQ 796
Cdd:pfam00038 268 LEAELQ 273
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
367-522 3.57e-04

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 42.99  E-value: 3.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 367 QHIEQL--LAERDLERAEVAKAtshICEVEKEIALLKAQheqyVAEAEEKLQRARLLVENVRKEKVDLSNQLEEERRKVE 444
Cdd:COG1579     4 EDLRALldLQELDSELDRLEHR---LKELPAELAELEDE----LAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIK 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 445 DLQFRVEEESITK--GDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEELSLRRGEIEE 522
Cdd:COG1579    77 KYEEQLGNVRNNKeyEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEA 156
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
406-638 3.96e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 44.14  E-value: 3.96e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  406 QYVAEAEEKLQRARLLVENVrKEKVDLSNQLEEERRKVEDLQ------FRVEEESITKGDLETQtqLEHARIGELEQSLL 479
Cdd:COG4913    215 EYMLEEPDTFEAADALVEHF-DDLERAHEALEDAREQIELLEpirelaERYAAARERLAELEYL--RAALRLWFAQRRLE 291
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  480 LEKAQAERLLRELADNrlttvaeKSRVLQLEEELSLRRGEIEELQHCLLQSGpppadhpeaAETLRLRERLLSASKEHQR 559
Cdd:COG4913    292 LLEAELEELRAELARL-------EAELERLEARLDALREELDELEAQIRGNG---------GDRLEQLEREIERLERELE 355
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907163864  560 DSTLLQDKYEHMLKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTENMGLMDNWKSKLdslaSDHQKSLEDLKATLNS 638
Cdd:COG4913    356 ERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAAL----RDLRRELRELEAEIAS 430
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
349-559 6.30e-04

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 43.57  E-value: 6.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 349 ARKISGTTALQEALKEKQQHIEQLLAErdLERAEVAKATSHicEVEKEIALLKAQHEQYVAEAEEKLQRARLLVENVRKE 428
Cdd:pfam17380 371 AMEISRMRELERLQMERQQKNERVRQE--LEAARKVKILEE--ERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAR 446
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 429 KVDLSNQLEEERR-KVEDLqfRVEEESITKGDLETQTQLEHARIGELEQSLLLEKaqaerllrELADNRLTTVAEKSRVL 507
Cdd:pfam17380 447 EMERVRLEEQERQqQVERL--RQQEEERKRKKLELEKEKRDRKRAEEQRRKILEK--------ELEERKQAMIEEERKRK 516
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1907163864 508 QLEEELSLRRGEIEELQHcLLQSGPPPADHPEAAETLRLRERLLSASKEHQR 559
Cdd:pfam17380 517 LLEKEMEERQKAIYEEER-RREAEEERRKQQEMEERRRIQEQMRKATEERSR 567
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
642-794 7.75e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 43.37  E-value: 7.75e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  642 AQQKEIGELKALVEGIKMEH-QLELGNLQAKHDLETAMHGK---EKEGLRQKLQEVQEELAGLQQHWR-------EQLEE 710
Cdd:COG4913    266 AARERLAELEYLRAALRLWFaQRRLELLEAELEELRAELARleaELERLEARLDALREELDELEAQIRgnggdrlEQLER 345
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  711 QASQHRLELQEAQDQCRDAQLRAQELeGLDVEY------RGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERL 784
Cdd:COG4913    346 EIERLERELEERERRRARLEALLAAL-GLPLPAsaeefaALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELREL 424
                          170
                   ....*....|
gi 1907163864  785 REKLLVAENR 794
Cdd:COG4913    425 EAEIASLERR 434
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
334-523 7.88e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 43.39  E-value: 7.88e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 334 RPSRSGLLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVE---KEIALLKAQHEQYVAE 410
Cdd:COG1196   583 RARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAgrlREVTLEGEGGSAGGSL 662
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 411 AEEKLQRARLLVENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLR 490
Cdd:COG1196   663 TGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELL 742
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1907163864 491 ELADNRLTTVAEKSRVL----QLEEELSLRRGEIEEL 523
Cdd:COG1196   743 EEEELLEEEALEELPEPpdleELERELERLEREIEAL 779
Cast pfam10174
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ...
406-793 8.90e-04

RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.


Pssm-ID: 431111 [Multi-domain]  Cd Length: 766  Bit Score: 42.89  E-value: 8.90e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 406 QYVAEAEEKLQRARLLVENVRKEKVDLS------NQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLL 479
Cdd:pfam10174 185 RRIAEAEMQLGHLEVLLDQKEKENIHLReelhrrNQLQPDPAKTKALQTVIEMKDTKISSLERNIRDLEDEVQMLKTNGL 264
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 480 LEKAQAERLLRELADNRLTTVAEKSRVLQLEEELSLRRGEIEELQHCLLQSGPPPADHPEAAETLRlrERLlsASKEhQR 559
Cdd:pfam10174 265 LHTEDREEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLK--ESL--TAKE-QR 339
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 560 DSTLlqdkyehmlktyQTEVDKLRAANE----------KYAQEVADLKAKVQQATTENMGLMDNWKSKLDSLasdhQKSL 629
Cdd:pfam10174 340 AAIL------------QTEVDALRLRLEekesflnkktKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVL----QKKI 403
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 630 EDLKATLNSgpgaQQKEIGELKALVEGIK------------MEHQLE-----LGNLQAKHDLETAMHGKEKEGLRQKLQE 692
Cdd:pfam10174 404 ENLQEQLRD----KDKQLAGLKERVKSLQtdssntdtalttLEEALSekeriIERLKEQREREDRERLEELESLKKENKD 479
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 693 VQEELAGLQQHWREQ------LEEQAS--------------QHRLELQEAQDQCRDAQ---LRAQELEgldveyrGQAQA 749
Cdd:pfam10174 480 LKEKVSALQPELTEKesslidLKEHASslassglkkdsklkSLEIAVEQKKEECSKLEnqlKKAHNAE-------EAVRT 552
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*
gi 1907163864 750 IEFLKEQISLAEKKMLDYemlqRAEAQSRQ-EAERLREKLLVAEN 793
Cdd:pfam10174 553 NPEINDRIRLLEQEVARY----KEESGKAQaEVERLLGILREVEN 593
HAP1_N pfam04849
HAP1 N-terminal conserved region; This family represents an N-terminal conserved region found ...
449-727 9.69e-04

HAP1 N-terminal conserved region; This family represents an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologs. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntington's disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34.


Pssm-ID: 461455 [Multi-domain]  Cd Length: 309  Bit Score: 42.32  E-value: 9.69e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 449 RVEEESITKGDLETQTQLEH---------ARIGeleQSLLlekaQAERLLREladnrlttvaeksRVLQLEEELSLRRGE 519
Cdd:pfam04849  57 RVSQMTKTYNDIEAVTRLLEekerdlelaARIG---QSLL----KQNSVLTE-------------RNEALEEQLGSAREE 116
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 520 IEELQHC------LLQ--SGPPPADHPEAAETLRLRERLLSASKEHQRDSTLLQDKyehmLKTYQTEVDKLRAANEKYAQ 591
Cdd:pfam04849 117 ILQLRHElskkddLLQiySNDAEESETESSCSTPLRRNESFSSLHGCVQLDALQEK----LRGLEEENLKLRSEASHLKT 192
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 592 EVADLKAKVQQattenmgLMDNWKSKLdSLASDHQKSLEDLKATLNSGPGAQQKEIGELKALVegIKMEHQLElgnlqak 671
Cdd:pfam04849 193 ETDTYEEKEQQ-------LMSDCVEQL-SEANQQMAELSEELARKMEENLRQQEEITSLLAQI--VDLQHKCK------- 255
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907163864 672 hdletaMHGKEKEGLRQKLQ-------EVQEELAGLQQHWREQLEeqasqhrlELQEAQDQCR 727
Cdd:pfam04849 256 ------ELGIENEELQQHLQaskeaqrQLTSELQELQDRYAECLG--------MLHEAQEELK 304
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
399-767 1.23e-03

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 462303 [Multi-domain]  Cd Length: 488  Bit Score: 42.19  E-value: 1.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 399 LLKAQHEQYVAEAEEKLQRARLLVENVRKEKVDLSNQLEEERRKVEDLQFRVEEesitkgdLETQTQLEHARIGELEQSL 478
Cdd:pfam07888  31 LLQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAE-------LKEELRQSREKHEELEEKY 103
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 479 LLEKAQAERLLRELADNRLTTVAEKSRVLQLEEE---LSLRRGEIEelqhcllqsgpppadhpeaAETLRLRER---LLS 552
Cdd:pfam07888 104 KELSASSEELSEEKDALLAQRAAHEARIRELEEDiktLTQRVLERE-------------------TELERMKERakkAGA 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 553 ASKEHQRDSTLLQDKY---EHMLKTYQTEVDKLRAANEKYAQEVADLKAKV----------QQATTENMGLMDNWKSKLD 619
Cdd:pfam07888 165 QRKEEEAERKQLQAKLqqtEEELRSLSKEFQELRNSLAQRDTQVLQLQDTIttltqklttaHRKEAENEALLEELRSLQE 244
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 620 SLASDHQKSlEDLKATLNSGPGAQQKEIGEL-KALVEGIKMEHQLELGNLQAKHDleTAMHGKEKEGLRQKLQEVQEELA 698
Cdd:pfam07888 245 RLNASERKV-EGLGEELSSMAAQRDRTQAELhQARLQAAQLTLQLADASLALREG--RARWAQERETLQQSAEADKDRIE 321
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907163864 699 GLQ---QHWREQLEEQASQH-RLELQEAQDQ-CRDAQLRAQELEglDVEYRGQAQAIEFLKEQISLAEKKMLDY 767
Cdd:pfam07888 322 KLSaelQRLEERLQEERMEReKLEVELGREKdCNRVQLSESRRE--LQELKASLRVAQKEKEQLQAEKQELLEY 393
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
545-778 1.33e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 42.45  E-value: 1.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 545 RLRERLLSASKEHQRDSTLLQDKyehmLKTYQTEVDKLRAANEKYAQEVADLKaKVQQATTENMGLMDNWKSKLDSL--- 621
Cdd:COG4717    50 RLEKEADELFKPQGRKPELNLKE----LKELEEELKEAEEKEEEYAELQEELE-ELEEELEELEAELEELREELEKLekl 124
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 622 --ASDHQKSLEDLKATLNSGPGaqqkeigELKALVEGIKMEHQLElgnlqakhdletamhgKEKEGLRQKLQEVQEELAG 699
Cdd:COG4717   125 lqLLPLYQELEALEAELAELPE-------RLEELEERLEELRELE----------------EELEELEAELAELQEELEE 181
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907163864 700 LQQHWREQLEEQASQHRLELQEAQDQCRDAQLRAQELEgldveyrgqaQAIEFLKEQISLAEKKMLDYEMLQRAEAQSR 778
Cdd:COG4717   182 LLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQ----------EELEELEEELEQLENELEAAALEERLKEARL 250
hsdR PRK11448
type I restriction enzyme EcoKI subunit R; Provisional
687-799 1.56e-03

type I restriction enzyme EcoKI subunit R; Provisional


Pssm-ID: 236912 [Multi-domain]  Cd Length: 1123  Bit Score: 42.25  E-value: 1.56e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  687 RQKLQEVQEELAGLqqhwREQLEEQASqhrlELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEflkeqislaekkmLD 766
Cdd:PRK11448   141 ENLLHALQQEVLTL----KQQLELQAR----EKAQSQALAEAQQQELVALEGLAAELEEKQQELE-------------AQ 199
                           90       100       110
                   ....*....|....*....|....*....|....
gi 1907163864  767 YEMLQ-RAEAQSRQEAERLREKLLVAENRLQAAE 799
Cdd:PRK11448   200 LEQLQeKAAETSQERKQKRKEITDQAAKRLELSE 233
EmrA COG1566
Multidrug resistance efflux pump EmrA [Defense mechanisms];
686-842 1.59e-03

Multidrug resistance efflux pump EmrA [Defense mechanisms];


Pssm-ID: 441174 [Multi-domain]  Cd Length: 331  Bit Score: 41.57  E-value: 1.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 686 LRQKLQEVQEELAGLqqhwreqleeQASQHRLELQEAQDQcRDAQLRAQelegldveyrgqaqaIEFLKEQISLAEKKML 765
Cdd:COG1566    81 LQAALAQAEAQLAAA----------EAQLARLEAELGAEA-EIAAAEAQ---------------LAAAQAQLDLAQRELE 134
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907163864 766 DYEMLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSAQHSHVIESSDLSEETIRMKETVEGL-QDKLNKRDKEVTA 842
Cdd:COG1566   135 RYQALYKKGAVSQQELDEARAALDAAQAQLEAAQAQLAQAQAGLREEEELAAAQAQVAQAEAALaQAELNLARTTIRA 212
HEC1 COG5185
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ...
350-631 1.76e-03

Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444066 [Multi-domain]  Cd Length: 594  Bit Score: 41.87  E-value: 1.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 350 RKISGTTALQEALKEKQQHIEQLLAERdlERAEVAKATShicEVEKEIALLKAQHEQYVAEAEEKLQRARLLVENVRKEk 429
Cdd:COG5185   296 EKIAEYTKSIDIKKATESLEEQLAAAE--AEQELEESKR---ETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGE- 369
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 430 vdlsNQLEEERRKVEDLQFRVeEESITKGDLETQTQLEHARIGE--LEQSLLLEKAQAERLLRELADNRLTTVAEKSRVL 507
Cdd:COG5185   370 ----VELSKSSEELDSFKDTI-ESTKESLDEIPQNQRGYAQEILatLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLN 444
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 508 QLEEELSLRRGEIEELQHCLLQSgpppadhPEAAETLRLRERLLSASKEHQRdstlLQDKYEHMLKTYQTEVDKLRAANE 587
Cdd:COG5185   445 ELISELNKVMREADEESQSRLEE-------AYDEINRSVRSKKEDLNEELTQ----IESRVSTLKATLEKLRAKLERQLE 513
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1907163864 588 KYAQEVADLKAKVQQATTENMGLMDNWKSKLDSLASDHQKSLED 631
Cdd:COG5185   514 GVRSKLDQVAESLKDFMRARGYAHILALENLIPASELIQASNAK 557
MAD pfam05557
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ...
658-838 2.41e-03

Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.


Pssm-ID: 461677 [Multi-domain]  Cd Length: 660  Bit Score: 41.65  E-value: 2.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 658 KMEHQLELGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLQQHWREQLEEQASQ---HRLELQEAQDQCRDAQLRAQ 734
Cdd:pfam05557  70 ALREQAELNRLKKKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELElqsTNSELEELQERLDLLKAKAS 149
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 735 ELEGLDVEYRGQAQAIEFLKEQIslaekKMLDYEMLQraEAQSRQEAERLREKLLvaenRLQAAESLCSAQHSHVIESSD 814
Cdd:pfam05557 150 EAEQLRQNLEKQQSSLAEAEQRI-----KELEFEIQS--QEQDSEIVKNSKSELA----RIPELEKELERLREHNKHLNE 218
                         170       180
                  ....*....|....*....|....
gi 1907163864 815 LSEETIRMKETVEGLQDKLNKRDK 838
Cdd:pfam05557 219 NIENKLLLKEEVEDLKRKLEREEK 242
Golgin_A5 pfam09787
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ...
369-510 2.45e-03

Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.


Pssm-ID: 462900 [Multi-domain]  Cd Length: 305  Bit Score: 40.90  E-value: 2.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 369 IEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRA--RLLVENVRKEKVD--LSNQLEEERRKVE 444
Cdd:pfam09787  49 LEELRQERDLLREEIQKLRGQIQQLRTELQELEAQQQEEAESSREQLQELeeQLATERSARREAEaeLERLQEELRYLEE 128
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 445 DL---------QFRVEEESITKGDLE---------TQTQLEhARIGELEQSLLLEKAQAERLLREladnrlttvaEKSRV 506
Cdd:pfam09787 129 ELrrskatlqsRIKDREAEIEKLRNQltsksqsssSQSELE-NRLHQLTETLIQKQTMLEALSTE----------KNSLV 197

                  ....
gi 1907163864 507 LQLE 510
Cdd:pfam09787 198 LQLE 201
PRK12704 PRK12704
phosphodiesterase; Provisional
347-512 2.84e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 41.30  E-value: 2.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 347 RYARKISGTTALQEALKEKQQHIEQllAERDLERAEVAKatshICEVEKEIALLKAQHEQYVAEAEEKLQRarlLVENVR 426
Cdd:PRK12704   22 YFVRKKIAEAKIKEAEEEAKRILEE--AKKEAEAIKKEA----LLEAKEEIHKLRNEFEKELRERRNELQK---LEKRLL 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 427 KEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQ----LEHARIGELEQSLLLEKAQA-ERLLRELADNrltTVA 501
Cdd:PRK12704   93 QKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEeleeLIEEQLQELERISGLTAEEAkEILLEKVEEE---ARH 169
                         170
                  ....*....|.
gi 1907163864 502 EKSRVLQLEEE 512
Cdd:PRK12704  170 EAAVLIKEIEE 180
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
356-696 2.97e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 41.16  E-value: 2.97e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 356 TALQEALKEKQQHIEQLLAErdleraEVAKATSHICEVEKEIAllkaQHEQYVAEAEEKLQRARLLVENVRKEKVDLSNQ 435
Cdd:TIGR04523 295 SEISDLNNQKEQDWNKELKS------ELKNQEKKLEEIQNQIS----QNNKIISQLNEQISQLKKELTNSESENSEKQRE 364
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 436 LEEERRKVEDLQFRVEE--ESIT-----KGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQ 508
Cdd:TIGR04523 365 LEEKQNEIEKLKKENQSykQEIKnlesqINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKD 444
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 509 LEEELSLRRGEIEELQhcllqsgpppadhpeaAETLRLRERLLSASKEHQRDSTLLQDKyEHMLKTYQTEVDKLRAANEK 588
Cdd:TIGR04523 445 LTNQDSVKELIIKNLD----------------NTRESLETQLKVLSRSINKIKQNLEQK-QKELKSKEKELKKLNEEKKE 507
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 589 YAQEVADLKAKVQQaTTENMGLMDNWKSKLDSLASDHQKSLEDLKATLNSGP-----GAQQKEIGELKALVEGIKM---E 660
Cdd:TIGR04523 508 LEEKVKDLTKKISS-LKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENlekeiDEKNKEIEELKQTQKSLKKkqeE 586
                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1907163864 661 HQLELGNLQA-KHDL--ETAMHGKEKEGLRQKLQEVQEE 696
Cdd:TIGR04523 587 KQELIDQKEKeKKDLikEIEEKEKKISSLEKELEKAKKE 625
TTKRSYEDQ pfam10212
Predicted coiled-coil domain-containing protein; This is the C-terminal 500 amino acids of a ...
683-850 3.56e-03

Predicted coiled-coil domain-containing protein; This is the C-terminal 500 amino acids of a family of proteins with a predicted coiled-coil domain conserved from nematodes to humans. It carries a characteriztic TTKRSYEDQ sequence-motif. The function is not known.


Pssm-ID: 463001  Cd Length: 523  Bit Score: 40.96  E-value: 3.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 683 KEGLRQKLQEVQEELAGLQQ---HWreQLEEQASQHRLELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEFLKEQISL 759
Cdd:pfam10212 304 REGLAQQVQQSQEKIAKLEQekeHW--MLEAQLLKIKLEKENQRIADLEKQLLKGSTSGQLPELVQSKATLPLTAKQGSE 381
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 760 AEKKMLDY--------EMLQRAEAQSRQEAERLREKLL-------VAE--NRLQAAESlcSAQHSH-----------VIE 811
Cdd:pfam10212 382 ASSISEKEptpstsliGMLTVTTDSEESSDEESREQLIkshymarIAEltSQLQLADS--KAVHFHaecralakrlaLAE 459
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1907163864 812 SS--DLSEETIRMKETVEGLQDKL--NKRDKEvtaltSQMDML 850
Cdd:pfam10212 460 KSkeSLTEELKLANQNISRLQDELttTKRSYE-----DQLSMM 497
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
587-788 3.68e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 40.91  E-value: 3.68e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 587 EKYAQEVADLKAKVQQATTENMGLMDNWKSKLDSLASDHQ--KSLEDLKATLNSGPGAQQKEIGELKALVEGIKMEHQLe 664
Cdd:COG4717    49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEeyAELQEELEELEEELEELEAELEELREELEKLEKLLQL- 127
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 665 LGNLQAKHDLETAMHGKEK--EGLRQKLQEVQEelaglQQHWREQLEEQASQHRLELQEAQDQCRDAQLraQELEGLDVE 742
Cdd:COG4717   128 LPLYQELEALEAELAELPErlEELEERLEELRE-----LEEELEELEAELAELQEELEELLEQLSLATE--EELQDLAEE 200
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1907163864 743 YRGQAQAIEFLKEQISLAEKKMLDYEmLQRAEAQSRQEAERLREKL 788
Cdd:COG4717   201 LEELQQRLAELEEELEEAQEELEELE-EELEQLENELEAAALEERL 245
CENP-F_leu_zip pfam10473
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, ...
363-513 4.67e-03

Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance.


Pssm-ID: 463102 [Multi-domain]  Cd Length: 140  Bit Score: 38.43  E-value: 4.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 363 KEKQQHIEQLLAERdleRAEVAKATSHICEVEKEIALLkaqheqyvaeaEEKLQRARLLVENVRKEKVDLSNQLEEERRK 442
Cdd:pfam10473   2 EKKQLHVLEKLKES---ERKADSLKDKVENLERELEMS-----------EENQELAILEAENSKAEVETLKAEIEEMAQN 67
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907163864 443 VEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLlekaQAERLLRELADNRLTTVAE-KSRVLQLEEEL 513
Cdd:pfam10473  68 LRDLELDLVTLRSEKENLTKELQKKQERVSELESLNS----SLENLLEEKEQEKVQMKEEsKTAVEMLQTQL 135
Cast pfam10174
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ...
486-854 5.61e-03

RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.


Pssm-ID: 431111 [Multi-domain]  Cd Length: 766  Bit Score: 40.58  E-value: 5.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 486 ERLLRELADNRLTTVAEKSRVLQ------------LEEELSLRRGEIEELQHCLLQSGPPPADHPEAAETLRLRERLLSA 553
Cdd:pfam10174  44 ERALRKEEAARISVLKEQYRVTQeenqhlqltiqaLQDELRAQRDLNQLLQQDFTTSPVDGEDKFSTPELTEENFRRLQS 123
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 554 SKEHQ-RDSTLLQDKYEHMLKTYQTEVDKLRAANEKYAQEVADLKAKVQ--------QATTENMGLMDNWKSKLDSLASD 624
Cdd:pfam10174 124 EHERQaKELFLLRKTLEEMELRIETQKQTLGARDESIKKLLEMLQSKGLpkksgeedWERTRRIAEAEMQLGHLEVLLDQ 203
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 625 HQKSLEDLKATLNSGPGAQQkEIGELKALVEGIKME-----------HQLELGNLQAKHDLETAMHGKEKEglrQKLQEV 693
Cdd:pfam10174 204 KEKENIHLREELHRRNQLQP-DPAKTKALQTVIEMKdtkisslerniRDLEDEVQMLKTNGLLHTEDREEE---IKQMEV 279
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 694 QEELAGLQQHWREQLEEQASQHRLELQEAQDQcrdaqlraqeLEGLDVEYRGQAQAIEFLKEqiSLAEKKmldyemlQRA 773
Cdd:pfam10174 280 YKSHSKFMKNKIDQLKQELSKKESELLALQTK----------LETLTNQNSDCKQHIEVLKE--SLTAKE-------QRA 340
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 774 EA-QSRQEAERLR----EKLLVAEN----RLQAAESLCSAQHSHVIESSDLSEETIR-MKETVEGLQDKLNKRDKEVTAL 843
Cdd:pfam10174 341 AIlQTEVDALRLRleekESFLNKKTkqlqDLTEEKSTLAGEIRDLKDMLDVKERKINvLQKKIENLQEQLRDKDKQLAGL 420
                         410
                  ....*....|.
gi 1907163864 844 TSQMDMLRAQS 854
Cdd:pfam10174 421 KERVKSLQTDS 431
ClpA COG0542
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ...
392-513 5.95e-03

ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440308 [Multi-domain]  Cd Length: 836  Bit Score: 40.45  E-value: 5.95e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 392 EVEKEIALLKAQHEQYVAEAE----EKLQRARLLVENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLEtqtQLE 467
Cdd:COG0542   415 ELERRLEQLEIEKEALKKEQDeasfERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQRYGKIP---ELE 491
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907163864 468 hARIGELEQSLllekAQAERLLRELAD----------------NRLTTvAEKSRVLQLEEEL 513
Cdd:COG0542   492 -KELAELEEEL----AELAPLLREEVTeediaevvsrwtgipvGKLLE-GEREKLLNLEEEL 547
PRK11281 PRK11281
mechanosensitive channel MscK;
587-830 6.68e-03

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 40.28  E-value: 6.68e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  587 EKYAQEVADLKAKVQQA---TTENMGLMDNWKSKLDS-LASDHQK-SLEDLKATLNSGPGAQ---QKEIGELKALVegIK 658
Cdd:PRK11281    76 DRQKEETEQLKQQLAQApakLRQAQAELEALKDDNDEeTRETLSTlSLRQLESRLAQTLDQLqnaQNDLAEYNSQL--VS 153
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  659 MEHQLElgnlQAKHDLETAMhgKEKEGLRQKLQEVQEELAGLQQHWREQLeeQASQHRLELQEAQDQcrdaqlraQELEG 738
Cdd:PRK11281   154 LQTQPE----RAQAALYANS--QRLQQIRNLLKGGKVGGKALRPSQRVLL--QAEQALLNAQNDLQR--------KSLEG 217
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  739 LDV-EYRGQAQaIEFLKEQISLAEK-----------KMLDYEMLQRAEAQSRQEAERlrekllVAENRLQAAESLCSAQH 806
Cdd:PRK11281   218 NTQlQDLLQKQ-RDYLTARIQRLEHqlqllqeainsKRLTLSEKTVQEAQSQDEAAR------IQANPLVAQELEINLQL 290
                          250       260
                   ....*....|....*....|....*....
gi 1907163864  807 S-HVIESSD----LSEETIRMKETVEGLQ 830
Cdd:PRK11281   291 SqRLLKATEklntLTQQNLRVKNWLDRLT 319
mukB PRK04863
chromosome partition protein MukB;
431-798 7.19e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 40.33  E-value: 7.19e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  431 DLSNQLEEERRKVEDLQFRVEEesitkgdleTQTQLEH-----------ARIGELEQSLLLEKAQAERLLRELADNRLTT 499
Cdd:PRK04863   790 QLRAEREELAERYATLSFDVQK---------LQRLHQAfsrfigshlavAFEADPEAELRQLNRRRVELERALADHESQE 860
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  500 VAEKSRVLQLEEELSLrrgeieeLQHCLLQSGP-PPADHPEAAETLRLRerlLSASKEHQRDStllqDKYEHMLKTYQTE 578
Cdd:PRK04863   861 QQQRSQLEQAKEGLSA-------LNRLLPRLNLlADETLADRVEEIREQ---LDEAEEAKRFV----QQHGNALAQLEPI 926
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  579 VDKLRAANEKYAQevadLKAKVQQATTEnmglMDNWKSKLDSLASDHQK----SLEDLKATLNSGPGAQQKEIGELKALv 654
Cdd:PRK04863   927 VSVLQSDPEQFEQ----LKQDYQQAQQT----QRDAKQQAFALTEVVQRrahfSYEDAAEMLAKNSDLNEKLRQRLEQA- 997
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  655 EGIKMEHQLELGNLQAKHDLETAMHGKEK---EGLRQKLQEVQEELAGLQQHWREQLEEQASQHRLELQEAQDQCR---- 727
Cdd:PRK04863   998 EQERTRAREQLRQAQAQLAQYNQVLASLKssyDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHARLSANRsrrn 1077
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  728 --DAQLRAQELE---------GLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQ--SRQEAERLREKLLVAENR 794
Cdd:PRK04863  1078 qlEKQLTFCEAEmdnltkklrKLERDYHEMREQVVNAKAGWCAVLRLVKDNGVERRLHRRelAYLSADELRSMSDKALGA 1157

                   ....
gi 1907163864  795 LQAA 798
Cdd:PRK04863  1158 LRLA 1161
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
408-524 7.30e-03

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 441980 [Multi-domain]  Cd Length: 644  Bit Score: 39.84  E-value: 7.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 408 VAEAEEKLQRARLLVEN--VRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQA 485
Cdd:COG2433   378 IEEALEELIEKELPEEEpeAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEE 457
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1907163864 486 ERLLRELAD-NRLttvaeKSRVLQLEEELSLRRGEIEELQ 524
Cdd:COG2433   458 RREIRKDREiSRL-----DREIERLERELEEERERIEELK 492
DUF4200 pfam13863
Domain of unknown function (DUF4200); This family is found in eukaryotes. It is a coiled-coil ...
358-452 7.93e-03

Domain of unknown function (DUF4200); This family is found in eukaryotes. It is a coiled-coil domain of unknwon function.


Pssm-ID: 464003 [Multi-domain]  Cd Length: 119  Bit Score: 37.16  E-value: 7.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 358 LQEALKEKQQHIEQLLAERDLERAEVAKAtshicevEKEIALLKAQHEQYVAEAEEKLQRARLLVENVRKEKVDLSNQLE 437
Cdd:pfam13863  11 VQLALDAKREEIERLEELLKQREEELEKK-------EQELKEDLIKFDKFLKENDAKRRRALKKAEEETKLKKEKEKEIK 83
                          90
                  ....*....|....*
gi 1907163864 438 EERRKVEDLQFRVEE 452
Cdd:pfam13863  84 KLTAQIEELKSEISK 98
mukB PRK04863
chromosome partition protein MukB;
417-846 8.10e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 39.94  E-value: 8.10e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  417 RARLLVEN--VRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQT--------QLEHARIGELEQSLLLEKAQAE 486
Cdd:PRK04863   218 RDYLLPENsgVRKAFQDMEAALRENRMTLEAIRVTQSDRDLFKHLITESTnyvaadymRHANERRVHLEEALELRRELYT 297
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  487 -RLLRELADNRLTTVAEKsrvlqlEEELSLRRGEIEelqhcllqsgpppADHPEAAETLRLRERLLSASKEHQRdstllq 565
Cdd:PRK04863   298 sRRQLAAEQYRLVEMARE------LAELNEAESDLE-------------QDYQAASDHLNLVQTALRQQEKIER------ 352
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  566 dkyehmlktYQTEVDKLRAANEKYAQ-------EVADLKAKVQQATTEnmglMDNWKSKLdslaSDHQKSLEdlkatlns 638
Cdd:PRK04863   353 ---------YQADLEELEERLEEQNEvveeadeQQEENEARAEAAEEE----VDELKSQL----ADYQQALD-------- 407
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  639 gpgAQQKEIGE----LKAL--VEGIKMEHQLELGNLQAKHdletamhgkekEGLRQKLQEVQEELAGLQQHWREQlEEQA 712
Cdd:PRK04863   408 ---VQQTRAIQyqqaVQALerAKQLCGLPDLTADNAEDWL-----------EEFQAKEQEATEELLSLEQKLSVA-QAAH 472
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  713 SQHRlelQEAQDQCR--------DAQLRAQELEGLDVEYRGQAQAIEFLKEQISlaekkmldyEMLQRAEAQSRQEaERL 784
Cdd:PRK04863   473 SQFE---QAYQLVRKiagevsrsEAWDVARELLRRLREQRHLAEQLQQLRMRLS---------ELEQRLRQQQRAE-RLL 539
                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907163864  785 REKLLVAENRLQAAESLCSAQHSHVIESSDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQ 846
Cdd:PRK04863   540 AEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAAR 601
mukB PRK04863
chromosome partition protein MukB;
407-758 8.24e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 39.94  E-value: 8.24e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  407 YVAEAEEklqRARLLVE--NVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIgeleQSLLLEKAQ 484
Cdd:PRK04863   274 YMRHANE---RRVHLEEalELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHL----NLVQTALRQ 346
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  485 AERLLRELAD-NRLTTVAEKS---------RVLQLEEELSLRRGEIEELQHCLlqsgpppADHPEAAETLRLRE------ 548
Cdd:PRK04863   347 QEKIERYQADlEELEERLEEQnevveeadeQQEENEARAEAAEEEVDELKSQL-------ADYQQALDVQQTRAiqyqqa 419
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  549 -RLLSASKEHQRDSTLLQDKYEHMLKTYQTEVD-----------KLR---AANEKYAQ--------------EVADLKAK 599
Cdd:PRK04863   420 vQALERAKQLCGLPDLTADNAEDWLEEFQAKEQeateellsleqKLSvaqAAHSQFEQayqlvrkiagevsrSEAWDVAR 499
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  600 V-------QQATTENMGlmdNWKSKLDSLASDH--QKSLEDLKATLNSGPGAQQKEIGELKALVEgikmehqlELGNLQA 670
Cdd:PRK04863   500 EllrrlreQRHLAEQLQ---QLRMRLSELEQRLrqQQRAERLLAEFCKRLGKNLDDEDELEQLQE--------ELEARLE 568
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864  671 KHDLETAMHGKEKEGLRQKLQEVQEELAGLQQHWREQLEEQASQHRLelqeaQDQCRDAQLRAQELEG-----------L 739
Cdd:PRK04863   569 SLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARL-----REQSGEEFEDSQDVTEymqqllerereL 643
                          410
                   ....*....|....*....
gi 1907163864  740 DVEYRGQAQAIEFLKEQIS 758
Cdd:PRK04863   644 TVERDELAARKQALDEEIE 662
PRK01156 PRK01156
chromosome segregation protein; Provisional
365-703 8.54e-03

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 39.88  E-value: 8.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 365 KQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEA------EEKLQRARLLVENVRKekvdlsnQLEE 438
Cdd:PRK01156  136 GQGEMDSLISGDPAQRKKILDEILEINSLERNYDKLKDVIDMLRAEIsnidylEEKLKSSNLELENIKK-------QIAD 208
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 439 ERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELeQSLLLEKAQAERLLRElADNRlttvaeksrvLQLEEELSLRRG 518
Cdd:PRK01156  209 DEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNEL-SSLEDMKNRYESEIKT-AESD----------LSMELEKNNYYK 276
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 519 EIEElQHCLLQSGPPPADHPEAAETLRLRERLLSASKEHQRDSTLLQdKYEHMLKTYQtEVDKLRAANEKYAQEVADLKA 598
Cdd:PRK01156  277 ELEE-RHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEIN-KYHAIIKKLS-VLQKDYNDYIKKKSRYDDLNN 353
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907163864 599 KVQQATTENM---GLMDNWKSKlDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKALVEGIK---MEHQLELGNLQAKh 672
Cdd:PRK01156  354 QILELEGYEMdynSYLKSIESL-KKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINvklQDISSKVSSLNQR- 431
                         330       340       350
                  ....*....|....*....|....*....|.
gi 1907163864 673 dletamhgkeKEGLRQKLQEVQEELAGLQQH 703
Cdd:PRK01156  432 ----------IRALRENLDELSRNMEMLNGQ 452
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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