|
Name |
Accession |
Description |
Interval |
E-value |
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
213-277 |
1.01e-34 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 126.75 E-value: 1.01e-34
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907165194 213 VGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKV 277
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
60-124 |
4.98e-31 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 116.35 E-value: 4.98e-31
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907165194 60 VGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKL 124
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
213-278 |
3.09e-28 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 108.44 E-value: 3.09e-28
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907165194 213 VGDRVLVGGT-KAGVVRFLGETDFAKGEWCGVELDEPL-GKNDGAVAGTRYFQCQPKYGLFAPVHKVT 278
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
60-125 |
2.10e-27 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 106.13 E-value: 2.10e-27
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907165194 60 VGERVWVNGN-KPGFIQFLGETQFAPGQWAGIVLDEP-IGKNDGSVAGVRYFQCEPLKGIFTRPSKLT 125
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPlRGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
333-1189 |
2.87e-18 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 91.74 E-value: 2.87e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 333 GLLTETSSRYARKISGTTALQEALK--EKQQHIEQLLAERDLERAEVAKAtshvGEIEQELALARDGHDQHVLELEAKMD 410
Cdd:PTZ00121 1098 GKAEEAKKTETGKAEEARKAEEAKKkaEDARKAEEARKAEDARKAEEARK----AEDAKRVEIARKAEDARKAEEARKAE 1173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 411 QLRTMVEAADREKVELLNQLE--EEKRKVEDLQFRVEEESITKG-------DLETQTKLEHARTKElEQSLLFEKTKADK 481
Cdd:PTZ00121 1174 DAKKAEAARKAEEVRKAEELRkaEDARKAEAARKAEEERKAEEArkaedakKAEAVKKAEEAKKDA-EEAKKAEEERNNE 1252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 482 LQRELEDTRVATVSEKSRIMELEKdlalrAQEVAELRRRLESSKPpgdvdmslsllQEISALQEKLEAIHTDHQGEMTSL 561
Cdd:PTZ00121 1253 EIRKFEEARMAHFARRQAAIKAEE-----ARKADELKKAEEKKKA-----------DEAKKAEEKKKADEAKKKAEEAKK 1316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 562 KEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKEnsdviaLWKSKLETAIASHQQAMEELKVSFSKGIGTDS 641
Cdd:PTZ00121 1317 ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADE------AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEK 1390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 642 AEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLN 721
Cdd:PTZ00121 1391 KKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK 1470
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 722 KLQEAEIKKEKfASTSEEAVSAQTRMQDTVNKLHQKEEQfNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEN 801
Cdd:PTZ00121 1471 KADEAKKKAEE-AKKADEAKKKAEEAKKKADEAKKAAEA-KKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKA 1548
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 802 DiaEIMKMSGDNSSQLTKMNDElrlKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKL 881
Cdd:PTZ00121 1549 D--ELKKAEELKKAEEKKKAEE---AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE 1623
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 882 LELEKKMETSYNQCQDLKAKYEKASSETKTKHEEilqnlqkmladtEDKLKAAQEANRDlmqdmEELKTQADKAKAAQta 961
Cdd:PTZ00121 1624 ELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEE------------ENKIKAAEEAKKA-----EEDKKKAEEAKKAE-- 1684
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 962 EDAMQIMEQMTKEKTET--LASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKEllsVENQKMEEFKKEIETLKQAAA 1039
Cdd:PTZ00121 1685 EDEKKAAEALKKEAEEAkkAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAE---EDKKKAEEAKKDEEEKKKIAH 1761
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1040 QKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQ-----LLEMKKRESEFRKDADEEKASLQKSISLTSAL 1114
Cdd:PTZ00121 1762 LKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFdnfanIIEGGKEGNLVINDSKEMEDSAIKEVADSKNM 1841
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907165194 1115 LTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLElqlKENKRQLSSSSGNTDAQAEEDE 1189
Cdd:PTZ00121 1842 QLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIE---KIDKDDIEREIPNNNMAGKNND 1913
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
455-1200 |
8.85e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 83.18 E-value: 8.85e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 455 ETQTKLEHARtKELEQ--SLLFE-KTKADKLQRELEDT-RVATVSEKSRimelEKDLALRAQEVAELRRRLESSKppGDV 530
Cdd:TIGR02168 176 ETERKLERTR-ENLDRleDILNElERQLKSLERQAEKAeRYKELKAELR----ELELALLVLRLEELREELEELQ--EEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 531 DMSLSLLQEISALQEKLEAIHTDHQGEMTSLKEhfgaREEAFQKEIKALHTATEKLSKENESLRSKLDHANKEN---SDV 607
Cdd:TIGR02168 249 KEAEEELEELTAELQELEEKLEELRLEVSELEE----EIEELQKELYALANEISRLEQQKQILRERLANLERQLeelEAQ 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 608 IALWKSKLETAIASHQQAMEELKVsfskgigtDSAEFAELKTQIERLRLDYQhEIESLQSKQDSERSAHAKEMETMQAKL 687
Cdd:TIGR02168 325 LEELESKLDELAEELAELEEKLEE--------LKEELESLEAELEELEAELE-ELESRLEELEEQLETLRSKVAQLELQI 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 688 MKIIKEKEdSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKK--EKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLS 765
Cdd:TIGR02168 396 ASLNNEIE-RLEARLERLEDRRERLQQEIEELLKKLEEAELKElqAELEELEEELEELQEELERLEEALEELREELEEAE 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 766 SELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLkERSVEE-----LQLKLTK 840
Cdd:TIGR02168 475 QALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGY-EAAIEAalggrLQAVVVE 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 841 ----ANENASFL-QKSIGEVTLKAE--------QSQQQAARKHEEEKKELEEKLLELEKKME-------------TSYNQ 894
Cdd:TIGR02168 554 nlnaAKKAIAFLkQNELGRVTFLPLdsikgteiQGNDREILKNIEGFLGVAKDLVKFDPKLRkalsyllggvlvvDDLDN 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 895 CQDLKAKYE--------------------KASSETKTKheeiLQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADK 954
Cdd:TIGR02168 634 ALELAKKLRpgyrivtldgdlvrpggvitGGSAKTNSS----ILERRREIEELEEKIEELEEKIAELEKALAELRKELEE 709
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 955 AKaaQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETL 1034
Cdd:TIGR02168 710 LE--EELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1035 KQAAAQKSQQLSALQEENVKLAEELGRTRDEVtsHQKLEEERSVLNNqlLEMKKRESEfrkDADEEKASLQKSISLTSAL 1114
Cdd:TIGR02168 788 EAQIEQLKEELKALREALDELRAELTLLNEEA--ANLRERLESLERR--IAATERRLE---DLEEQIEELSEDIESLAAE 860
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1115 LTEKDAELEKLRNEVTVLRGENATAKSLhsvVQTLESDKVKLELKVKNLELQLKENKRQLSSSsgnTDAQAEEDERAQES 1194
Cdd:TIGR02168 861 IEELEELIEELESELEALLNERASLEEA---LALLRSELEELSEELRELESKRSELRRELEEL---REKLAQLELRLEGL 934
|
....*.
gi 1907165194 1195 QIDFLN 1200
Cdd:TIGR02168 935 EVRIDN 940
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
352-1037 |
1.51e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.41 E-value: 1.51e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 352 LQEALKEKQQHIEQLLAERDLERAEVAKATshvgEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLE 431
Cdd:TIGR02168 335 LAEELAELEEKLEELKEELESLEAELEELE----AELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLE 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 432 EEKRKVEDLQFRVEEEsitkgdletQTKLEHARTKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELEKDLALRA 511
Cdd:TIGR02168 411 RLEDRRERLQQEIEEL---------LKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAE 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 512 QEVAELRRRLES----------------------SKPPGDVDmslsLLQEISALQEKLE-AIHTDHQGEMTSL---KEHF 565
Cdd:TIGR02168 482 RELAQLQARLDSlerlqenlegfsegvkallknqSGLSGILG----VLSELISVDEGYEaAIEAALGGRLQAVvveNLNA 557
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 566 GAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELkvsFSKGIGTDSaefa 645
Cdd:TIGR02168 558 AKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYL---LGGVLVVDD---- 630
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 646 eLKTQIERLR-LDYQHEIESLQ----------SKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQhLV 714
Cdd:TIGR02168 631 -LDNALELAKkLRPGYRIVTLDgdlvrpggviTGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKE-LE 708
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 715 EMEDTLNKLQEAEIKKE-KFASTSEEAVSAQTRMQdtvnklhQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLV 793
Cdd:TIGR02168 709 ELEEELEQLRKELEELSrQISALRKDLARLEAEVE-------QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE 781
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 794 KAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARkheee 873
Cdd:TIGR02168 782 AEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES----- 856
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 874 KKELEEKLLELEKKMETSYNQCQDLKAKYEKASSEtktkHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQAD 953
Cdd:TIGR02168 857 LAAEIEELEELIEELESELEALLNERASLEEALAL----LRSELEELSEELRELESKRSELRRELEELREKLAQLELRLE 932
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 954 KAKA------AQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEF 1027
Cdd:TIGR02168 933 GLEVridnlqERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDL 1012
|
730
....*....|
gi 1907165194 1028 KKEIETLKQA 1037
Cdd:TIGR02168 1013 TEAKETLEEA 1022
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
431-1101 |
2.11e-15 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 82.11 E-value: 2.11e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 431 EEEKRKVEdlqfrvEEESITKGDLETQTKLEHARTKELEQSLLFEKTKADKLqRELEDTRVATVSEKSRIMELEKDlALR 510
Cdd:PTZ00121 1094 EEAFGKAE------EAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDA-RKAEEARKAEDAKRVEIARKAED-ARK 1165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 511 AQEV--AELRRRLESSKPPGDVDMSLSLLQeisalQEKLEAIHTDHQGEMTSLKEHFGAREEAfqKEIKALHTATEKLSK 588
Cdd:PTZ00121 1166 AEEArkAEDAKKAEAARKAEEVRKAEELRK-----AEDARKAEAARKAEEERKAEEARKAEDA--KKAEAVKKAEEAKKD 1238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 589 ENESLRSKLDHANKE----NSDVIALWKSKLETAIASHQQAMEELKVSFSKGiGTDSAEFAELKTQIERLRLDYQheies 664
Cdd:PTZ00121 1239 AEEAKKAEEERNNEEirkfEEARMAHFARRQAAIKAEEARKADELKKAEEKK-KADEAKKAEEKKKADEAKKKAE----- 1312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 665 lQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDqhlvEMEDTLNKLQEAEIKKEKfASTSEEAVSAQ 744
Cdd:PTZ00121 1313 -EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAAD----EAEAAEEKAEAAEKKKEE-AKKKADAAKKK 1386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 745 TRMQDTVNKLHQKEEQFNVLSSELEKLRE---NLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMN 821
Cdd:PTZ00121 1387 AEEKKKADEAKKKAEEDKKKADELKKAAAakkKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKA 1466
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 822 DElrlkERSVEELQLKLTKAnenasflqKSIGEVTLKAEQSQQQA--ARKHEEEKKELEEKLLELEKKMETSYNQCQDLK 899
Cdd:PTZ00121 1467 EE----AKKADEAKKKAEEA--------KKADEAKKKAEEAKKKAdeAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAK 1534
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 900 AKYEKASSETKTKHEEILQnlQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETL 979
Cdd:PTZ00121 1535 KADEAKKAEEKKKADELKK--AEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA 1612
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 980 ASLEDTKQTNARLQNE---------LDTLKENNLKTVEELNKSKELLSV----ENQKMEEFKKEIETLKQAAAQKSQQLS 1046
Cdd:PTZ00121 1613 KKAEEAKIKAEELKKAeeekkkveqLKKKEAEEKKKAEELKKAEEENKIkaaeEAKKAEEDKKKAEEAKKAEEDEKKAAE 1692
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 1907165194 1047 AL--QEENVKLAEELGRTR-DEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEK 1101
Cdd:PTZ00121 1693 ALkkEAEEAKKAEELKKKEaEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
356-921 |
2.99e-15 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 81.32 E-value: 2.99e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 356 LKEKQQHIEQLLAERDLE----RAEVAKATSHVGEIEQELAL----ARDGHD---QHVLELEAKMDQLRTMVEAADREKV 424
Cdd:pfam15921 262 LQQHQDRIEQLISEHEVEitglTEKASSARSQANSIQSQLEIiqeqARNQNSmymRQLSDLESTVSQLRSELREAKRMYE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 425 ELLNQLEEE---------KRKVEDLQFRVEEESItkgDLETQTKLEHARTKELEQSLLFEKTK------------ADKLQ 483
Cdd:pfam15921 342 DKIEELEKQlvlanseltEARTERDQFSQESGNL---DDQLQKLLADLHKREKELSLEKEQNKrlwdrdtgnsitIDHLR 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 484 RELEDTRVatvsEKSRIMELEKDLALRAQ------------------EVAELRRRLESSKppgdvDMSLSLLQEISALQE 545
Cdd:pfam15921 419 RELDDRNM----EVQRLEALLKAMKSECQgqmerqmaaiqgknesleKVSSLTAQLESTK-----EMLRKVVEELTAKKM 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 546 KLEAIHTDHQGEMTSLKEHFGAReEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIAL-----WKSKLETAIA 620
Cdd:pfam15921 490 TLESSERTVSDLTASLQEKERAI-EATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALklqmaEKDKVIEILR 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 621 SHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQhEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEA 700
Cdd:pfam15921 569 QQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQ-EFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRA 647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 701 VKaRLDSAEDQHLVEMEDTLNKL----QEAEIKKEKFASTSEEavsaqtrMQDTVNKLHQkeeQFNVLSSELEKLRENLT 776
Cdd:pfam15921 648 VK-DIKQERDQLLNEVKTSRNELnslsEDYEVLKRNFRNKSEE-------METTTNKLKM---QLKSAQSELEQTRNTLK 716
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 777 DMEAKfkekddredqlvkakeklendIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQ----KSI 852
Cdd:pfam15921 717 SMEGS---------------------DGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKeeknKLS 775
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907165194 853 GEVTLKAEQSQQQAA-----RKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQ 921
Cdd:pfam15921 776 QELSTVATEKNKMAGelevlRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQ 849
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
386-1135 |
1.89e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.95 E-value: 1.89e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 386 EIEQELALAR-DGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLE-------EEKRKVEDLQFRVEEESITKGDLETQ 457
Cdd:TIGR02168 224 ELELALLVLRlEELREELEELQEELKEAEEELEELTAELQELEEKLEelrlevsELEEEIEELQKELYALANEISRLEQQ 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 458 TKLEHARTKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKppgdvdmslSLL 537
Cdd:TIGR02168 304 KQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE---------SRL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 538 QEISALQEKLEAIHTDHQGEMTSLKEHFGAREEafqkEIKALHTATEKLSKENESLRSKLDHANKEnsdvialwksKLET 617
Cdd:TIGR02168 375 EELEEQLETLRSKVAQLELQIASLNNEIERLEA----RLERLEDRRERLQQEIEELLKKLEEAELK----------ELQA 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 618 AIASHQQAMEELKVSFSKGIgTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERS----------------AHAKEME 681
Cdd:TIGR02168 441 ELEELEEELEELQEELERLE-EALEELREELEEAEQALDAAERELAQLQARLDSLERlqenlegfsegvkallKNQSGLS 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 682 TMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAeIKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQF 761
Cdd:TIGR02168 520 GILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAF-LKQNELGRVTFLPLDSIKGTEIQGNDREILKNIE 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 762 NVLSSELE------KLRENLTDMEAKFKEKDDREDQLVKAKEK--------LENDIAE----IMKMSGDNSSQLTKMNDE 823
Cdd:TIGR02168 599 GFLGVAKDlvkfdpKLRKALSYLLGGVLVVDDLDNALELAKKLrpgyrivtLDGDLVRpggvITGGSAKTNSSILERRRE 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 824 LRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKheeekkelEEKLLELEKKMETSYNQCQDLKAKYE 903
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL--------SRQISALRKDLARLEAEVEQLEERIA 750
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 904 KASSETKTKHEEILQNLQKmLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTA-EDAMQIMEQMTKEKTETLASL 982
Cdd:TIGR02168 751 QLSKELTELEAEIEELEER-LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDElRAELTLLNEEAANLRERLESL 829
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 983 EDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVEnqkMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRT 1062
Cdd:TIGR02168 830 ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL---IEELESELEALLNERASLEEALALLRSELEELSEELREL 906
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907165194 1063 RDEVtshQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLT----SALLTEKDAELEKLRNEVTVLRGE 1135
Cdd:TIGR02168 907 ESKR---SELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTleeaEALENKIEDDEEEARRRLKRLENK 980
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
351-835 |
9.89e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.13 E-value: 9.89e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 351 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDG---HDQHVLELEAKMDQLRTMVEAADREKVELL 427
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEeyeLLAELARLEQDIARLEERRRELEERLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 428 NQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARTKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELEKDL 507
Cdd:COG1196 323 EELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQL 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 508 ALRAQEVAELRRRLESSKppgdvDMSLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLS 587
Cdd:COG1196 403 EELEEAEEALLERLERLE-----EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 588 KENESLRSKLDHANKENSDVIALWK--SKLETAIASHQQA-MEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHE--- 661
Cdd:COG1196 478 ALAELLEELAEAAARLLLLLEAEADyeGFLEGVKAALLLAgLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEdde 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 662 -----IESLQSKQ---------DSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAE 727
Cdd:COG1196 558 vaaaaIEYLKAAKagratflplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALR 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 728 IKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQfnvLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIM 807
Cdd:COG1196 638 RAVTLAGRLREVTLEGEGGSAGGSLTGGSRREL---LAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEE 714
|
490 500
....*....|....*....|....*...
gi 1907165194 808 KMSGDNSSQLTKMNDELRLKERSVEELQ 835
Cdd:COG1196 715 ERLEEELEEEALEEQLEAEREELLEELL 742
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
211-271 |
1.00e-13 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 75.88 E-value: 1.00e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907165194 211 LKVGDRVLVGGTKaGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 271
Cdd:COG5244 4 LSVNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIF 63
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
406-1230 |
1.50e-13 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 75.93 E-value: 1.50e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 406 EAKMDQLRTMVEAADREKVELLnqLEEEKRKVEDLQFRVEEESitkgdletqtKLEHARTKELEQSLLFEKTKADKLQRE 485
Cdd:pfam15921 58 EVELDSPRKIIAYPGKEHIERV--LEEYSHQVKDLQRRLNESN----------ELHEKQKFYLRQSVIDLQTKLQEMQME 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 486 ledtRVATVSEKSRIMELEKDLALRAQEVAElrrRLESSKPpgdvdMSLSLLQEISALQEKLEAIHTDHQGEMTSLKEHF 565
Cdd:pfam15921 126 ----RDAMADIRRRESQSQEDLRNQLQNTVH---ELEAAKC-----LKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSIL 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 566 GAREEAFQKEI-----------KALHTATEKLSKENESLRSKLdhankenSDVIALWKSKLETAIASHQQAMEELkvsfs 634
Cdd:pfam15921 194 VDFEEASGKKIyehdsmstmhfRSLGSAISKILRELDTEISYL-------KGRIFPVEDQLEALKSESQNKIELL----- 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 635 kgigtdsaeFAELKTQIERLRLDYQHEIESLQSKQDSERSahakEMETMQAKlMKIIKEKEDSLEAVKARldsaedqHLV 714
Cdd:pfam15921 262 ---------LQQHQDRIEQLISEHEVEITGLTEKASSARS----QANSIQSQ-LEIIQEQARNQNSMYMR-------QLS 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 715 EMEDTLNKLQeAEIKKEKfastseeavsaqtRMQDtvNKLHQKEEQFNVLSSELEKLRenlTDMEAKFKEKDDREDQLvk 794
Cdd:pfam15921 321 DLESTVSQLR-SELREAK-------------RMYE--DKIEELEKQLVLANSELTEAR---TERDQFSQESGNLDDQL-- 379
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 795 akEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLqksigEVTLKAEQSQQQAarkheeek 874
Cdd:pfam15921 380 --QKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRL-----EALLKAMKSECQG-------- 444
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 875 keleekllelekKMETSYNQCQDLKAKYEKASSETKTkheeiLQNLQKMLADTEDKLKAAQeanrdlMQDMEELKTQADK 954
Cdd:pfam15921 445 ------------QMERQMAAIQGKNESLEKVSSLTAQ-----LESTKEMLRKVVEELTAKK------MTLESSERTVSDL 501
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 955 AKAAQTAEDAMqimEQMTKEKTETLASLEDTKQTNARLQNELDTLKenNLKTveELNKSKELLSVENQKMEEFKKEIETL 1034
Cdd:pfam15921 502 TASLQEKERAI---EATNAEITKLRSRVDLKLQELQHLKNEGDHLR--NVQT--ECEALKLQMAEKDKVIEILRQQIENM 574
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1035 KQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERsvlnnqllEMKKRESEFR-KDADEEKASLQKSISLTSA 1113
Cdd:pfam15921 575 TQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKK--------DAKIRELEARvSDLELEKVKLVNAGSERLR 646
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1114 LLTEKDAELEKLRNEVTVLRGE-NATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQ 1192
Cdd:pfam15921 647 AVKDIKQERDQLLNEVKTSRNElNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAM 726
|
810 820 830
....*....|....*....|....*....|....*....
gi 1907165194 1193 ESQIDFLNSVIVdlQRKNQD-LKMKVEMMSEAALNGNGE 1230
Cdd:pfam15921 727 KVAMGMQKQITA--KRGQIDaLQSKIQFLEEAMTNANKE 763
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
698-1060 |
2.88e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.51 E-value: 2.88e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 698 LEAVKARLDSAEDqHLVEMEDTLNKLQE--------AEIKKE-----------KFASTSEEAVSAQTRMQDTVNKLHQKE 758
Cdd:COG1196 181 LEATEENLERLED-ILGELERQLEPLERqaekaeryRELKEElkeleaellllKLRELEAELEELEAELEELEAELEELE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 759 EQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKL 838
Cdd:COG1196 260 AELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 839 TKANENASFLQKSIGEVTLKAEQSQQQAARkheeekkeleekllelekkmetsynqcqdLKAKYEKASSETKTKHEEILQ 918
Cdd:COG1196 340 EELEEELEEAEEELEEAEAELAEAEEALLE-----------------------------AEAELAEAEEELEELAEELLE 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 919 NLQKmLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAmqimeqmtkEKTETLASLEDTKQTNARLQNELDT 998
Cdd:COG1196 391 ALRA-AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEE---------EEEEEEEALEEAAEEEAELEEEEEA 460
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907165194 999 LKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELG 1060
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGL 522
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
824-1169 |
2.96e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 2.96e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 824 LRLKERSvEELQLKLTKANENASFLQKSIGEV-----TL-----KAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYN 893
Cdd:TIGR02168 168 SKYKERR-KETERKLERTRENLDRLEDILNELerqlkSLerqaeKAERYKELKAELRELELALLVLRLEELREELEELQE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 894 QCQDLKAKYEKASSETKTKHEEILQNLQKMLADtEDKLKAAQEANRDLMQDMEELKTQadKAKAAQTAEDAMQIMEQMTK 973
Cdd:TIGR02168 247 ELKEAEEELEELTAELQELEEKLEELRLEVSEL-EEEIEELQKELYALANEISRLEQQ--KQILRERLANLERQLEELEA 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 974 EKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENV 1053
Cdd:TIGR02168 324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1054 KLAEELGRTRDEVtshQKLEEERSVLNNQLLEMKKRESEFRKDA-DEEKASLQKSISLTSALLTEKDAELEKLRNEVTVL 1132
Cdd:TIGR02168 404 RLEARLERLEDRR---ERLQQEIEELLKKLEEAELKELQAELEElEEELEELQEELERLEEALEELREELEEAEQALDAA 480
|
330 340 350
....*....|....*....|....*....|....*..
gi 1907165194 1133 RGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKE 1169
Cdd:TIGR02168 481 ERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSG 517
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
60-121 |
3.56e-12 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 70.87 E-value: 3.56e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907165194 60 VGERVWVNGNKpGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRP 121
Cdd:COG5244 6 VNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRP 66
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
351-979 |
6.72e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.35 E-value: 6.72e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 351 ALQEALKEKQqhIEQLLAERDLERAEVAKAtshvgeiEQELAlardghdqhvlELEAKMDQLRTMVEAADREKVELLNQL 430
Cdd:COG1196 217 ELKEELKELE--AELLLLKLRELEAELEEL-------EAELE-----------ELEAELEELEAELAELEAELEELRLEL 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 431 EEEKRKVEDLQFRVEEESITKGDLETQTKLEHARTKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELEKDLALR 510
Cdd:COG1196 277 EELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 511 AQEVAELRRRLESskppgDVDMSLSLLQEISALQEKLEAIHTDHQgEMTSLKEHFGAREEAFQKEIKALHTATEKLSKEN 590
Cdd:COG1196 357 EAELAEAEEALLE-----AEAELAEAEEELEELAEELLEALRAAA-ELAAQLEELEEAEEALLERLERLEEELEELEEAL 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 591 ESLRSKLDHANKENSDvIALWKSKLETAIASHQQAMEELKVSFSKGIgtdsAEFAELKTQIERLRLDYQHEIESLQSKQD 670
Cdd:COG1196 431 AELEEEEEEEEEALEE-AAEEEAELEEEEEALLELLAELLEEAALLE----AALAELLEELAEAAARLLLLLEAEADYEG 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 671 SERSAHAKEMETMQAKLMKIIKE---KEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKKEKF--ASTSEEAVSAQT 745
Cdd:COG1196 506 FLEGVKAALLLAGLRGLAGAVAVligVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAgrATFLPLDKIRAR 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 746 RMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAE--IMKMSGDNSSQLTKMNDE 823
Cdd:COG1196 586 AALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRlrEVTLEGEGGSAGGSLTGG 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 824 LRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYE 903
Cdd:COG1196 666 SRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEE 745
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 904 KASSETKTKHEEILQN---LQKMLADTEDKLK-------AAQEANRDLMQDMEELKTQADKAKAAqtAEDAMQIMEQMTK 973
Cdd:COG1196 746 ELLEEEALEELPEPPDleeLERELERLEREIEalgpvnlLAIEEYEELEERYDFLSEQREDLEEA--RETLEEAIEEIDR 823
|
....*.
gi 1907165194 974 EKTETL 979
Cdd:COG1196 824 ETRERF 829
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
340-975 |
1.30e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 69.32 E-value: 1.30e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 340 SRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELaLARDGHDQHVLELEAKMDQLRTMVEAA 419
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV-KELEELKEEIEELEKELESLEGSKRKL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 420 DREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARTKELEQSLLFEKTKAD------KLQRELEDTRvat 493
Cdd:PRK03918 258 EEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRleeeinGIEERIKELE--- 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 494 vSEKSRIMELEKdlalraqEVAELRRRLESSKPpgdvdmSLSLLQEISALQEKLEaihtdhqgemtSLKEHFGARE-EAF 572
Cdd:PRK03918 335 -EKEERLEELKK-------KLKELEKRLEELEE------RHELYEEAKAKKEELE-----------RLKKRLTGLTpEKL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 573 QKEIKALHTATEKLSKENESLRSKldhankensdvialwKSKLETAIASHQQAMEELKVsfskgigtdsaefAELKTQIE 652
Cdd:PRK03918 390 EKELEELEKAKEEIEEEISKITAR---------------IGELKKEIKELKKAIEELKK-------------AKGKCPVC 441
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 653 RLRLDYQHEIESLqskqdSERSAHAKEMEtmqaKLMKIIKEKEDSLEAVKARLDS--AEDQHLVEMEDTLNKLQEAEIKK 730
Cdd:PRK03918 442 GRELTEEHRKELL-----EEYTAELKRIE----KELKEIEEKERKLRKELRELEKvlKKESELIKLKELAEQLKELEEKL 512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 731 EKFasTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEN----DIAEI 806
Cdd:PRK03918 513 KKY--NLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEElgfeSVEEL 590
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 807 MKMSGDNSS------QLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQ----QQAARKHEEEKKE 876
Cdd:PRK03918 591 EERLKELEPfyneylELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEkkysEEEYEELREEYLE 670
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 877 LEEKLLELEKKMETSYNQCQDLKAKYE--KASSETKTKHEEILQNLQKMLADTEDklkaaqeanrdLMQDMEELKTQADK 954
Cdd:PRK03918 671 LSRELAGLRAELEELEKRREEIKKTLEklKEELEEREKAKKELEKLEKALERVEE-----------LREKVKKYKALLKE 739
|
650 660
....*....|....*....|.
gi 1907165194 955 AKAAQTAEDAMQIMEQMTKEK 975
Cdd:PRK03918 740 RALSKVGEIASEIFEELTEGK 760
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
567-1187 |
1.34e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 69.33 E-value: 1.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 567 AREEAFQKEIKALHTATEKLSKENESLRSKLDHANKEnsdvIALWKSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAE 646
Cdd:TIGR02169 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKR----LEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIAS 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 647 LKTQIErLRLDYQHEIESLQSKQDSERSAHAKEMEtmqaKLMKIIKEKEDSLEAVKARLDSAEDqhlvEMEDTLNKLQEA 726
Cdd:TIGR02169 306 LERSIA-EKERELEDAEERLAKLEAEIDKLLAEIE----ELEREIEEERKRRDKLTEEYAELKE----ELEDLRAELEEV 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 727 EikkEKFASTSEEAVSAQTRMQDTVNKLH-------QKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKL 799
Cdd:TIGR02169 377 D---KEFAETRDELKDYREKLEKLKREINelkreldRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQ 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 800 ENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENAS--------------FLQKSIGEVTLKAEQSQQQ 865
Cdd:TIGR02169 454 EWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARaseervrggraveeVLKASIQGVHGTVAQLGSV 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 866 AARKHEEEKKELEEKLLELEKKMETSYNQCQDLkAKYEKASSET-----KTKHEEILQNLQKM---------LADTEDKL 931
Cdd:TIGR02169 534 GERYATAIEVAAGNRLNNVVVEDDAVAKEAIEL-LKRRKAGRATflplnKMRDERRDLSILSEdgvigfavdLVEFDPKY 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 932 KAA-------------QEANRDLM-------------------------QDMEELKTQADKAKAAQTAED---------- 963
Cdd:TIGR02169 613 EPAfkyvfgdtlvvedIEAARRLMgkyrmvtlegelfeksgamtggsraPRGGILFSRSEPAELQRLRERleglkrelss 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 964 AMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQ 1043
Cdd:TIGR02169 693 LQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEE 772
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1044 QLSALQEENVKLAEELGRTR-DEVTSH-QKLEEERSVLNNQLLEMKKRES-----------------EFRKDADEEKASL 1104
Cdd:TIGR02169 773 DLHKLEEALNDLEARLSHSRiPEIQAElSKLEEEVSRIEARLREIEQKLNrltlekeylekeiqelqEQRIDLKEQIKSI 852
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1105 QKSISLTSALLTEKDAELEKLRNEVTVLRGEnatAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQ 1184
Cdd:TIGR02169 853 EKEIENLNGKKEELEEELEELEAALRDLESR---LGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEAL 929
|
...
gi 1907165194 1185 AEE 1187
Cdd:TIGR02169 930 EEE 932
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
614-1164 |
2.89e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.42 E-value: 2.89e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 614 KLETAIASHQQAMEELKvsfskgigtdsAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAK--EMETMQAKLMKII 691
Cdd:COG1196 243 ELEAELEELEAELEELE-----------AELAELEAELEELRLELEELELELEEAQAEEYELLAElaRLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 692 KEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKL 771
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 772 RENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEImkmsGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKS 851
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEEL----EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 852 IGEVTLKAEQSQQQAARKHEEEKKELEEKllelekkmetsynqcQDLKAKYEKASSETKTKHEEILQNLQ----KMLADT 927
Cdd:COG1196 468 LLEEAALLEAALAELLEELAEAAARLLLL---------------LEAEADYEGFLEGVKAALLLAGLRGLagavAVLIGV 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 928 EDKLKAAQEA------NRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASL------------EDTKQTN 989
Cdd:COG1196 533 EAAYEAALEAalaaalQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALArgaigaavdlvaSDLREAD 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 990 ARLQNELDTLKENNLKTVEELNKSKELLSVENqkmeefkKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSH 1069
Cdd:COG1196 613 ARYYVLGDTLLGRTLVAARLEAALRRAVTLAG-------RLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELA 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1070 QKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTL 1149
Cdd:COG1196 686 ERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL 765
|
570
....*....|....*
gi 1907165194 1150 ESDKVKLELKVKNLE 1164
Cdd:COG1196 766 ERELERLEREIEALG 780
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
335-864 |
3.01e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 68.14 E-value: 3.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 335 LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDqhvleleakmdqlrt 414
Cdd:PRK02224 239 ADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAG--------------- 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 415 mVEAADREKVELlnQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARTKELEQSLLFEKTKADKLQRELEDTRVATV 494
Cdd:PRK02224 304 -LDDADAEAVEA--RREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 495 SEKSRIMELEKdlalraqEVAELRRRLESSkpPGDVDMSLSLLQEisaLQEKLEAIHTDHQGEMTSLKEHFGAREEAFQ- 573
Cdd:PRK02224 381 DRREEIEELEE-------EIEELRERFGDA--PVDLGNAEDFLEE---LREERDELREREAELEATLRTARERVEEAEAl 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 574 ----------KEIK-ALHTAT--------EKLSKENESLRSKLDHANKENSDVIALwkSKLETAIASHQQAMEELkvsfS 634
Cdd:PRK02224 449 leagkcpecgQPVEgSPHVETieedrervEELEAELEDLEEEVEEVEERLERAEDL--VEAEDRIERLEERREDL----E 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 635 KGIGTDSAEFAELKTQIERLRldyqHEIESLQSKQDSERSAHAKEMETMQAKLMKiIKEKEDSLEAVKARLDSAED--QH 712
Cdd:PRK02224 523 ELIAERRETIEEKRERAEELR----ERAAELEAEAEEKREAAAEAEEEAEEAREE-VAELNSKLAELKERIESLERirTL 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 713 LVEMEDTLNKLQEAEIKKEKFASTSEEAVSAQTRMQDTVNKLHQK--EEQFNVLSSELEKLRENLTDMEAKFKEKDDRED 790
Cdd:PRK02224 598 LAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEfdEARIEEAREDKERAEEYLEQVEEKLDELREERD 677
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907165194 791 QLVKAKEKLENDIAEImkmsgdnssqltkmnDELRLKERSVEELQLKLTKANENASFLQKSIGEvtLKAEQSQQ 864
Cdd:PRK02224 678 DLQAEIGAVENELEEL---------------EELRERREALENRVEALEALYDEAEELESMYGD--LRAELRQR 734
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
768-1176 |
4.24e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 67.78 E-value: 4.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 768 LEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSV----------EELQLK 837
Cdd:PRK03918 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELeklekevkelEELKEE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 838 LTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELE-KKMETSYNQCQDLKAKYEKASSE---TKTKH 913
Cdd:PRK03918 240 IEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKElKEKAEEYIKLSEFYEEYLDELREiekRLSRL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 914 EEILQNLQKMLADTEDK---LKAAQEANRDLMQDMEELKtqadkaKAAQTAEDAMQIMEQMTKEKTETlasledTKQTNA 990
Cdd:PRK03918 320 EEEINGIEERIKELEEKeerLEELKKKLKELEKRLEELE------ERHELYEEAKAKKEELERLKKRL------TGLTPE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 991 RLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEEN-----VKLAEELGRTRDE 1065
Cdd:PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHrkellEEYTAELKRIEKE 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1066 VtshQKLEEERSVLNNQLLEMKK---RESEF---RKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATA 1139
Cdd:PRK03918 468 L---KEIEEKERKLRKELRELEKvlkKESELiklKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSL 544
|
410 420 430
....*....|....*....|....*....|....*..
gi 1907165194 1140 KSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSS 1176
Cdd:PRK03918 545 KKELEKLEELKKKLAELEKKLDELEEELAELLKELEE 581
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
694-1223 |
4.30e-11 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 67.89 E-value: 4.30e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 694 KEDSLEAVKARLDSAEDQhLVEMEDTLNKLQEA--------EIKKEKFASTSEEAVSAQTRMQDTVNKLH-------QKE 758
Cdd:pfam01576 10 KEEELQKVKERQQKAESE-LKELEKKHQQLCEEknalqeqlQAETELCAEAEEMRARLAARKQELEEILHelesrleEEE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 759 EQFNVLSSELEKLRENLTDMEAKFKEKDDREDQL----VKAKEKLENDIAEIMKMSGDNSsqltKMNDELRLKERSVEEL 834
Cdd:pfam01576 89 ERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLqlekVTTEAKIKKLEEDILLLEDQNS----KLSKERKLLEERISEF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 835 QLKLTKANENASFLQK---------SIGEVTLKAEQSQQQAARKHEEEKKELEEKLLElekkmetsynQCQDLKAKYEKA 905
Cdd:pfam01576 165 TSNLAEEEEKAKSLSKlknkheamiSDLEERLKKEEKGRQELEKAKRKLEGESTDLQE----------QIAELQAQIAEL 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 906 SSETKTKHEEiLQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQ--IMEQMTKEKTEtlasLE 983
Cdd:pfam01576 235 RAQLAKKEEE-LQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRrdLGEELEALKTE----LE 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 984 DTKQTNArLQNELDTLKENNL----KTVEELNKS-----KELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVK 1054
Cdd:pfam01576 310 DTLDTTA-AQQELRSKREQEVtelkKALEEETRSheaqlQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAE 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1055 LAEELgrtRDEVTSHQKLEEERSVLNNQLLEMKKRESE---FRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTV 1131
Cdd:pfam01576 389 LQAEL---RTLQQAKQDSEHKRKKLEGQLQELQARLSEserQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSS 465
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1132 LRGENATAKSLhsvVQTLESDKVKLELKVKNLELQLKENKRQLSsssgntdaQAEEDERAQESQIDFLNSVIVDLQRKNQ 1211
Cdd:pfam01576 466 LESQLQDTQEL---LQEETRQKLNLSTRLRQLEDERNSLQEQLE--------EEEEAKRNVERQLSTLQAQLSDMKKKLE 534
|
570
....*....|..
gi 1907165194 1212 DLKMKVEMMSEA 1223
Cdd:pfam01576 535 EDAGTLEALEEG 546
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
352-1130 |
4.41e-11 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 67.69 E-value: 4.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 352 LQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELE---AKMDQLRTMVEAADREKVELLN 428
Cdd:pfam02463 242 LQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEelkSELLKLERRKVDDEEKLKESEK 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 429 QLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARTKELEQSLLFEKTK---ADKLQRELEDTRVATVSEKSRIMELEK 505
Cdd:pfam02463 322 EKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLeeeLLAKKKLESERLSSAAKLKEEELELKS 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 506 DLALRAQEVAELRRRLESSKppgdVDMSLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEK 585
Cdd:pfam02463 402 EEEKEAQLLLELARQLEDLL----KEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKET 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 586 LSKENESLRSKLDHANKENSDVIALwkSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEiESL 665
Cdd:pfam02463 478 QLVKLQEQLELLLSRQKLEERSQKE--SKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIV-EVS 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 666 QSKQDSERSAHAKEMETmQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKKEKFASTSEEAVSAQT 745
Cdd:pfam02463 555 ATADEVEERQKLVRALT-ELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTE 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 746 RMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSsqLTKMNDELR 825
Cdd:pfam02463 634 LTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIK--KKEQREKEE 711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 826 LKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKA 905
Cdd:pfam02463 712 LKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEE 791
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 906 SSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEE-LKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLED 984
Cdd:pfam02463 792 KEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEeLEELALELKEEQKLEKLAEEELERLEEEITKEELLQE 871
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 985 TKQTnaRLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRD 1064
Cdd:pfam02463 872 LLLK--EEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKE 949
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907165194 1065 EVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVT 1130
Cdd:pfam02463 950 KEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEET 1015
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
344-1091 |
5.13e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.40 E-value: 5.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 344 RKISGTTALQEALKEKQQH---IEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAK----MDQLRTMV 416
Cdd:TIGR02169 217 LKEKREYEGYELLKEKEALerqKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeeeQLRVKEKI 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 417 EAADREKVELLNQLEEEKRKVEDLqfrveEESITKGDLETQTKLEHARtkELEQSLLFEKTKADKLQRELEDTRVATVSE 496
Cdd:TIGR02169 297 GELEAEIASLERSIAEKERELEDA-----EERLAKLEAEIDKLLAEIE--ELEREIEEERKRRDKLTEEYAELKEELEDL 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 497 KSRIMELEKDLALRAQEVAELRRRLESSKPPGDvdmslSLLQEISALQEKLEAIHT---DHQGEMTSLKE---HFGAREE 570
Cdd:TIGR02169 370 RAELEEVDKEFAETRDELKDYREKLEKLKREIN-----ELKRELDRLQEELQRLSEelaDLNAAIAGIEAkinELEEEKE 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 571 AFQKEIKA----LHTATEKLSKENES---LRSKLDHANKENSDVialwKSKLETAIASHQQAMEELKVSFS--KGIGTDS 641
Cdd:TIGR02169 445 DKALEIKKqewkLEQLAADLSKYEQElydLKEEYDRVEKELSKL----QRELAEAEAQARASEERVRGGRAveEVLKASI 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 642 AEFAELKTQIERLRLDYQHEIESLQSK-------QDSERSAHA----KEMETMQAKLMKIIKEKEDSLEAVKARLDSAED 710
Cdd:TIGR02169 521 QGVHGTVAQLGSVGERYATAIEVAAGNrlnnvvvEDDAVAKEAiellKRRKAGRATFLPLNKMRDERRDLSILSEDGVIG 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 711 Q--HLVEME------------DTL--NKLQEA--------------EIKKEKFAST--SEEAVSAQTRMQDTVNKLHQKE 758
Cdd:TIGR02169 601 FavDLVEFDpkyepafkyvfgDTLvvEDIEAArrlmgkyrmvtlegELFEKSGAMTggSRAPRGGILFSRSEPAELQRLR 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 759 EQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKL 838
Cdd:TIGR02169 681 ERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSEL 760
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 839 TKANENASFLQKSIGEVTLKAE-------QSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKT 911
Cdd:TIGR02169 761 KELEARIEELEEDLHKLEEALNdlearlsHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQE 840
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 912 KHEEI----------LQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAqtaedamqiMEQMTKEKTETLAS 981
Cdd:TIGR02169 841 QRIDLkeqiksiekeIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQ---------LRELERKIEELEAQ 911
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 982 LEDTKQTNARLQNELDTLKENnLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAaaqksqqLSALQEENVK----LAE 1057
Cdd:TIGR02169 912 IEKKRKRLSELKAKLEALEEE-LSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEE-------IRALEPVNMLaiqeYEE 983
|
810 820 830
....*....|....*....|....*....|....*.
gi 1907165194 1058 ELGRTRDEVTSHQKLEEERSVLNNQL--LEMKKRES 1091
Cdd:TIGR02169 984 VLKRLDELKEKRAKLEEERKAILERIeeYEKKKREV 1019
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
430-1250 |
1.38e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 66.15 E-value: 1.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 430 LEEEKRKVEDLQFRVEEESITKGDLEtQTKLEHARTKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELEKDLAL 509
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIID-LEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 510 RAQEVAELRrrlesskppgdvdmsLSLLQEISALQEKLEAIHTDHQGEMtslkehfgaREEAFQKEIKALHTATEKLSKE 589
Cdd:pfam02463 245 LLRDEQEEI---------------ESSKQEIEKEEEKLAQVLKENKEEE---------KEKKLQEEELKLLAKEEEELKS 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 590 NESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQ 669
Cdd:pfam02463 301 ELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKK 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 670 DSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKAR--LDSAEDQH-----LVEMEDTLNKLQEAEIKKEKFASTSEEAVS 742
Cdd:pfam02463 381 LESERLSSAAKLKEEELELKSEEEKEAQLLLELARqlEDLLKEEKkeeleILEEEEESIELKQGKLTEEKEELEKQELKL 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 743 AQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDRE-----DQLVKAKEKLENDIAEIMKMSGDNSSQL 817
Cdd:pfam02463 461 LKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSglkvlLALIKDGVGGRIISAHGRLGDLGVAVEN 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 818 TKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQ- 896
Cdd:pfam02463 541 YKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDk 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 897 DLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQmtKEKT 976
Cdd:pfam02463 621 RAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEI--LRRQ 698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 977 ETLASLEDTKQTNARLQNELDTLKENNLKTvEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLA 1056
Cdd:pfam02463 699 LEIKKKEQREKEELKKLKLEAEELLADRVQ-EAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELA 777
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1057 EELGRTRDEVtshqKLEEERSVLNNQLLEMKKRESEfRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGEN 1136
Cdd:pfam02463 778 EEREKTEKLK----VEEEKEEKLKAQEEELRALEEE-LKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLA 852
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1137 ATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQIDFLNSVIvDLQRKNQDLKMK 1216
Cdd:pfam02463 853 EEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEI-EERIKEEAEILL 931
|
810 820 830
....*....|....*....|....*....|....
gi 1907165194 1217 VEMMSEAALNGNGEDLNSYDSDDQEKQSKKKPRL 1250
Cdd:pfam02463 932 KYEEEPEELLLEEADEKEKEENNKEEEEERNKRL 965
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
951-1224 |
2.09e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 2.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 951 QADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKE 1030
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEER 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1031 IETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVtshQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISL 1110
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEEL---EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1111 TSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDER 1190
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
250 260 270
....*....|....*....|....*....|....
gi 1907165194 1191 AQESQIDFLNSVIVDLQRKNQDLKMKVEMMSEAA 1224
Cdd:COG1196 475 LEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
335-806 |
3.78e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 3.78e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 335 LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALArdghDQHVLELEAKMDQLRT 414
Cdd:COG1196 290 EYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEA----EEELEEAEAELAEAEE 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 415 MVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARTKELEQSLLFEKTKADKLQRELEDTRVATV 494
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 495 SEKSRIMELEKDLALRAQEVAELRRRLESSKppGDVDMSLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFG-------- 566
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELLEEAALLE--AALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLlaglrgla 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 567 ---------------AREEAFQKEIKALHTATE----------KLSKENESLRSKLDHANKENSDVIALWKSKLETAIAS 621
Cdd:COG1196 524 gavavligveaayeaALEAALAAALQNIVVEDDevaaaaieylKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDL 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 622 HQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAklmkiiKEKEDSLEAV 701
Cdd:COG1196 604 VASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSR------RELLAALLEA 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 702 KARLDSAEDQHLVEMEDTLNKLQEAEIKKEKFASTSEEAVSAQTRMQDtvnKLHQKEEQFNVLSSELEKLRENLTDMEAK 781
Cdd:COG1196 678 EAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEA---LEEQLEAEREELLEELLEEEELLEEEALE 754
|
490 500
....*....|....*....|....*
gi 1907165194 782 FKEKDDREDQLVKAKEKLENDIAEI 806
Cdd:COG1196 755 ELPEPPDLEELERELERLEREIEAL 779
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
334-1032 |
5.37e-10 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 63.97 E-value: 5.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 334 LLTETSSRYARKISGTTALQEALKEKQQHIEQLLaERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDqlr 413
Cdd:pfam05483 159 LLKETCARSAEKTKKYEYEREETRQVYMDLNNNI-EKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKE--- 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 414 tmVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARTKELEQsllfektKADKLQRELEDTRVAT 493
Cdd:pfam05483 235 --INDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIE-------KKDHLTKELEDIKMSL 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 494 VSEKSRIMELEKDLALRAQEVAELRRRLESSkppgdvdmslslLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQ 573
Cdd:pfam05483 306 QRSMSTQKALEEDLQIATKTICQLTEEKEAQ------------MEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLE 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 574 KEIKALHTATEKLSKENESLRSKLDHANKENSDVialwkSKLETAIASHQQAMEELKvsfskgigtdsaefaELKTQIER 653
Cdd:pfam05483 374 KNEDQLKIITMELQKKSSELEEMTKFKNNKEVEL-----EELKKILAEDEKLLDEKK---------------QFEKIAEE 433
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 654 LRLDYQHEIESLQSKQdsersahaKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKKEKF 733
Cdd:pfam05483 434 LKGKEQELIFLLQARE--------KEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELT 505
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 734 ASTSEEAVSAQTRMQDTVNKLHQKE---EQFNVLSSELEKLRENLTDMEAKFKEK-DDREDQLVKAKEKLENDIAEIMKM 809
Cdd:pfam05483 506 QEASDMTLELKKHQEDIINCKKQEErmlKQIENLEEKEMNLRDELESVREEFIQKgDEVKCKLDKSEENARSIEYEVLKK 585
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 810 SGDNSSQLTKMND---ELRLKERSVEELQlkltkaNENASFLQKSigevtlKAEQSQQQAarkheeekkeLEEKLLELEK 886
Cdd:pfam05483 586 EKQMKILENKCNNlkkQIENKNKNIEELH------QENKALKKKG------SAENKQLNA----------YEIKVNKLEL 643
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 887 KMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKaaqtaedamQ 966
Cdd:pfam05483 644 ELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHK---------H 714
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907165194 967 IMEQMTKEKTETLASLEDTKQTNARLQNELDTlKENNLKTveELNKSKELLSVENQKMEEFKKEIE 1032
Cdd:pfam05483 715 QYDKIIEERDSELGLYKNKEQEQSSAKAALEI-ELSNIKA--ELLSLKKQLEIEKEEKEKLKMEAK 777
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
428-1124 |
8.23e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 63.50 E-value: 8.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 428 NQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARTKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELEKDL 507
Cdd:TIGR04523 47 NELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVEL 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 508 ALRAQEVAELRRRL-----ESSKPPGDVDMSLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFG-AREEAFQKEIKALht 581
Cdd:TIGR04523 127 NKLEKQKKENKKNIdkfltEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDkIKNKLLKLELLLS-- 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 582 ATEKLSKENESLRSKLDHANKENSdvialwksKLETAIASHQQAMEELKvsfskgigtdsAEFAELKTQIERLRLDYQHE 661
Cdd:TIGR04523 205 NLKKKIQKNKSLESQISELKKQNN--------QLKDNIEKKQQEINEKT-----------TEISNTQTQLNQLKDEQNKI 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 662 IESLQSKQdsersahaKEMETMQAKlmkiIKEKEDSLEAVKARLDsaedqhlvemedTLNKLQEAEIKKEkfasTSEEAV 741
Cdd:TIGR04523 266 KKQLSEKQ--------KELEQNNKK----IKELEKQLNQLKSEIS------------DLNNQKEQDWNKE----LKSELK 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 742 SAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMN 821
Cdd:TIGR04523 318 NQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLE 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 822 DELRLKERSVEELQLKLTKANENASFLQKSIGEvtLKAEQSQQQAARKheeekkeleeKLLELEKKMETSYNQCQDLKAK 901
Cdd:TIGR04523 398 SKIQNQEKLNQQKDEQIKKLQQEKELLEKEIER--LKETIIKNNSEIK----------DLTNQDSVKELIIKNLDNTRES 465
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 902 YEKASSETKTKHEEI---LQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTA-EDAMQIMEQMTKEKTE 977
Cdd:TIGR04523 466 LETQLKVLSRSINKIkqnLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKlESEKKEKESKISDLED 545
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 978 TLASLEDTKQTNA------RLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEE 1051
Cdd:TIGR04523 546 ELNKDDFELKKENlekeidEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKE 625
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907165194 1052 NVKLAEELgrtRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEK 1124
Cdd:TIGR04523 626 NEKLSSII---KNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKELSLHYKK 695
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
679-1135 |
8.49e-10 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 63.66 E-value: 8.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 679 EMETMQAKLMKIIKEKEDSLEAVKARLDSAED--------------------QHLVEMEDTLNKLQ------EAEIKK-- 730
Cdd:pfam01576 58 EAEEMRARLAARKQELEEILHELESRLEEEEErsqqlqnekkkmqqhiqdleEQLDEEEAARQKLQlekvttEAKIKKle 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 731 -------EKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDI 803
Cdd:pfam01576 138 edillleDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGES 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 804 AEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVT---------LKAEQSQQQAARKHEEEK 874
Cdd:pfam01576 218 TDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEaqiselqedLESERAARNKAEKQRRDL 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 875 KELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADK 954
Cdd:pfam01576 298 GEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEK 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 955 AKAAQTAEDA-----MQIMEQMTKEK-----------TETLASLEDTKQTNA-------RLQNELDTLKeNNLKTVEELN 1011
Cdd:pfam01576 378 AKQALESENAelqaeLRTLQQAKQDSehkrkklegqlQELQARLSESERQRAelaeklsKLQSELESVS-SLLNEAEGKN 456
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1012 --KSKELLSVENQkMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELgrtRDEVTSHQKLEEERSVLNNQLLEMKKR 1089
Cdd:pfam01576 457 ikLSKDVSSLESQ-LQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQL---EEEEEAKRNVERQLSTLQAQLSDMKKK 532
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 1907165194 1090 ESEFR---KDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGE 1135
Cdd:pfam01576 533 LEEDAgtlEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQE 581
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
344-1159 |
1.06e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.16 E-value: 1.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 344 RKISGTTALQEALKEKQQHIEQLLAE-----RDLERAEVAKATSHVGEIEQELALARDGHD---QHVLELEAKMDQLRTM 415
Cdd:TIGR02169 251 EELEKLTEEISELEKRLEEIEQLLEElnkkiKDLGEEEQLRVKEKIGELEAEIASLERSIAekeRELEDAEERLAKLEAE 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 416 VEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARTKELEQSLLFEKTKADKLQRELEDTRvatvS 495
Cdd:TIGR02169 331 IDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELK----R 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 496 EKSRIMELEKDLALRAQEVAELRRRLESSKPPGDVDMsLSLLQEISALQEKLEAIHTDhqgemtslkehfgarEEAFQKE 575
Cdd:TIGR02169 407 ELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEK-EDKALEIKKQEWKLEQLAAD---------------LSKYEQE 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 576 IKALHTATEKLSKENESLRSKLDHANKEnsdvialwKSKLETAIASHQQAMEELKVSFSKGIGTDSaefaelktQIERLR 655
Cdd:TIGR02169 471 LYDLKEEYDRVEKELSKLQRELAEAEAQ--------ARASEERVRGGRAVEEVLKASIQGVHGTVA--------QLGSVG 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 656 LDYQHEIESLQSK-------QDSERSAHA----KEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQ--HLVEMEDtlnk 722
Cdd:TIGR02169 535 ERYATAIEVAAGNrlnnvvvEDDAVAKEAiellKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFavDLVEFDP---- 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 723 lQEAEIKKEKFAST-------SEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKA 795
Cdd:TIGR02169 611 -KYEPAFKYVFGDTlvvedieAARRLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRE 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 796 KEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIG--EVTLKAEQSQQQAARKHEEE 873
Cdd:TIGR02169 690 LSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSslEQEIENVKSELKELEARIEE 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 874 KKELEEKLLELEKKMETSYNQ--CQDLKAKYEKAsSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQ 951
Cdd:TIGR02169 770 LEEDLHKLEEALNDLEARLSHsrIPEIQAELSKL-EEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ 848
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 952 ADKAKAAQtaedamqimEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEI 1031
Cdd:TIGR02169 849 IKSIEKEI---------ENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRL 919
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1032 ETLKQAAAQKSQQLSALQEENVKLAEELGRT---RDEVTSHQKLEEERSVL---NNQLLEMKKRESEFRKDADEEKASLQ 1105
Cdd:TIGR02169 920 SELKAKLEALEEELSEIEDPKGEDEEIPEEElslEDVQAELQRVEEEIRALepvNMLAIQEYEEVLKRLDELKEKRAKLE 999
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....
gi 1907165194 1106 KSisltSALLTEKDAELEKLRNEVtVLRGENATAKSLHSVVQTLESDKVKLELK 1159
Cdd:TIGR02169 1000 EE----RKAILERIEEYEKKKREV-FMEAFEAINENFNEIFAELSGGTGELILE 1048
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
690-1126 |
3.39e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 61.59 E-value: 3.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 690 IIKEKEDSLEAVKARLDSAEDQHLVEMEDTLN-KLQEAEIKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSEL 768
Cdd:PRK02224 181 VLSDQRGSLDQLKAQIEEKEEKDLHERLNGLEsELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 769 EKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSG----------DNSSQLTKMNDELRlkeRSVEELQLKL 838
Cdd:PRK02224 261 EDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGlddadaeaveARREELEDRDEELR---DRLEECRVAA 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 839 TKANENASFLQKSIGEVTLKAEQSQQQAArkheeekkeleekllelekkmetsynqcqDLKAKYEKASSETKTKHEEI-- 916
Cdd:PRK02224 338 QAHNEEAESLREDADDLEERAEELREEAA-----------------------------ELESELEEAREAVEDRREEIee 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 917 ----LQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAA-QTAEDAMQIMEQMTK-----------EKTETLA 980
Cdd:PRK02224 389 leeeIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATlRTARERVEEAEALLEagkcpecgqpvEGSPHVE 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 981 SLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQ------KMEEFKKEIETLKQAAAQKSQQLSALQEENVK 1054
Cdd:PRK02224 469 TIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRierleeRREDLEELIAERRETIEEKRERAEELRERAAE 548
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907165194 1055 LAEELGRTRDEVTS-HQKLEEERSVLNNqlLEMKKRESEFRKDADEEKASLQksisltsALLTEKDAELEKLR 1126
Cdd:PRK02224 549 LEAEAEEKREAAAEaEEEAEEAREEVAE--LNSKLAELKERIESLERIRTLL-------AAIADAEDEIERLR 612
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
645-1197 |
3.67e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 3.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 645 AELKTQIERLR------LDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQH------ 712
Cdd:COG1196 196 GELERQLEPLErqaekaERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELeelrle 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 713 LVEMEDTLNKLQEAE-IKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQ 791
Cdd:COG1196 276 LEELELELEEAQAEEyELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 792 LVKAKEKLENDIAEimkmsgDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKhE 871
Cdd:COG1196 356 AEAELAEAEEALLE------AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE-E 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 872 EEKKELEEKLLELEKKMETSYNQcQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDL-MQDMEELKT 950
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAAEEE-AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLeAEADYEGFL 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 951 QADKAKAAQTAED----AMQIMEQMTKEKTETLASLEDTKQTNARLQNELD------TLKENNL--KTVEELNKSKELLS 1018
Cdd:COG1196 508 EGVKAALLLAGLRglagAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVaaaaieYLKAAKAgrATFLPLDKIRARAA 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1019 VENQKMEEFKKE----IETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFR 1094
Cdd:COG1196 588 LAAALARGAIGAavdlVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSR 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1095 KDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQL 1174
Cdd:COG1196 668 RELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEEL 747
|
570 580
....*....|....*....|...
gi 1907165194 1175 SSSSGNTDAQAEEDERAQESQID 1197
Cdd:COG1196 748 LEEEALEELPEPPDLEELERELE 770
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
351-822 |
5.79e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 60.82 E-value: 5.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 351 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELalardghdQHVLELEAKMDQLRTMVEAADREKVELLNQL 430
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERR--------EELETLEAEIEDLRETIAETEREREELAEEV 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 431 EEEKRKVEDLQFRVEeesitkgDLETQTKLEHARTKELEQSLLFEKTKADKLQRELEDTRV---ATVSEKSRIMELEKDL 507
Cdd:PRK02224 282 RDLRERLEELEEERD-------DLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVaaqAHNEEAESLREDADDL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 508 ALRAQEVAELRRRLESskppgDVDMSLSLLQEISALQEKLEAihtdhqgEMTSLKEHFGAREEAFqkeikalhtatEKLS 587
Cdd:PRK02224 355 EERAEELREEAAELES-----ELEEAREAVEDRREEIEELEE-------EIEELRERFGDAPVDL-----------GNAE 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 588 KENESLRSKLDHANKENSDVIALWKSkLETAIASHQQAMEELKVSfskgigtdsaefaelktqierlrldyqheiESLQS 667
Cdd:PRK02224 412 DFLEELREERDELREREAELEATLRT-ARERVEEAEALLEAGKCP------------------------------ECGQP 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 668 KQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDqhLVEMEDTLNKLQEaeikkekfastseeavsaqtRM 747
Cdd:PRK02224 461 VEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAED--LVEAEDRIERLEE--------------------RR 518
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907165194 748 QDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMND 822
Cdd:PRK02224 519 EDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER 593
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
573-1174 |
7.02e-09 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 60.51 E-value: 7.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 573 QKEIKALHTATEKLSKENESLRSKLDHANKENSDVIA------LWKSKLETAIAS----------HQQAMEELKVSFSKG 636
Cdd:pfam05483 112 RKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKennatrHLCNLLKETCARsaektkkyeyEREETRQVYMDLNNN 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 637 IGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEM---ETMQAKLMKIIKEKEDSLEAVKARLDSAEDQhl 713
Cdd:pfam05483 192 IEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEIndkEKQVSLLLIQITEKENKMKDLTFLLEESRDK-- 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 714 VEMEDTLNKLQEAEIKK--EKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKL-RENLTDMEAKFKEKDDR-- 788
Cdd:pfam05483 270 ANQLEEKTKLQDENLKEliEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLtEEKEAQMEELNKAKAAHsf 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 789 ------------EDQLVKAKEKLEN--DIAEIMKMS-GDNSSQLTKMNDELRLKERSVEELQLKL----TKANENASFlq 849
Cdd:pfam05483 350 vvtefeattcslEELLRTEQQRLEKneDQLKIITMElQKKSSELEEMTKFKNNKEVELEELKKILaedeKLLDEKKQF-- 427
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 850 KSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEK---ASSETKTKHEEILQNLQKMLAD 926
Cdd:pfam05483 428 EKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKeklKNIELTAHCDKLLLENKELTQE 507
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 927 TED---KLKAAQEANRDLMQDMEELKTQADKAKAAQTA-EDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKEN 1002
Cdd:pfam05483 508 ASDmtlELKKHQEDIINCKKQEERMLKQIENLEEKEMNlRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEK 587
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1003 NLKTVE-ELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDE----VTSHQKLEEERS 1077
Cdd:pfam05483 588 QMKILEnKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKfeeiIDNYQKEIEDKK 667
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1078 VLNNQLLEmkkrESEFRKDADEEKASLQKSISL-TSALLTEKDAELEKLRNEVTVLRGENATAKSLH-SVVQTLESDKVK 1155
Cdd:pfam05483 668 ISEEKLLE----EVEKAKAIADEAVKLQKEIDKrCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYkNKEQEQSSAKAA 743
|
650
....*....|....*....
gi 1907165194 1156 LELKVKNLELQLKENKRQL 1174
Cdd:pfam05483 744 LEIELSNIKAELLSLKKQL 762
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
926-1231 |
7.11e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.34 E-value: 7.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 926 DTEDKLKAAQEaN----RDLMQD----MEELKTQADKAKAAQTAEDAMQI---------MEQMTKEKTETLASLEDTKQT 988
Cdd:COG1196 176 EAERKLEATEE-NlerlEDILGElerqLEPLERQAEKAERYRELKEELKEleaellllkLRELEAELEELEAELEELEAE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 989 NARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETL----------KQAAAQKSQQLSA-LQEENVKLAE 1057
Cdd:COG1196 255 LEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLeqdiarleerRRELEERLEELEEeLAELEEELEE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1058 ELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENA 1137
Cdd:COG1196 335 LEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1138 TAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSgNTDAQAEEDERAQESQIDFLNSVIVDLQRKNQDLKMKV 1217
Cdd:COG1196 415 RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE-EEEEALLELLAELLEEAALLEAALAELLEELAEAAARL 493
|
330
....*....|....
gi 1907165194 1218 EMMSEAALNGNGED 1231
Cdd:COG1196 494 LLLLEAEADYEGFL 507
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
753-1177 |
8.49e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.03 E-value: 8.49e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 753 KLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMN---DELRLKER 829
Cdd:TIGR04523 132 QKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLElllSNLKKKIQ 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 830 SVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHeeekkeleekllelekkmetsyNQCQDLKAKYEKASSET 909
Cdd:TIGR04523 212 KNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQ----------------------TQLNQLKDEQNKIKKQL 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 910 KTKHEEILQNLQKmLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTetlaSLEDTKQTN 989
Cdd:TIGR04523 270 SEKQKELEQNNKK-IKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNK----IISQLNEQI 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 990 ARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETL--------------KQAAAQKSQQLSALQEENVKL 1055
Cdd:TIGR04523 345 SQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLesqindleskiqnqEKLNQQKDEQIKKLQQEKELL 424
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1056 AEELGRTRDEVTSHQK----LEEERSVLNNQLLEMKKRESEFRKDADEEKAS---LQKSISLTSALLTEKDAELEKLRNE 1128
Cdd:TIGR04523 425 EKEIERLKETIIKNNSeikdLTNQDSVKELIIKNLDNTRESLETQLKVLSRSinkIKQNLEQKQKELKSKEKELKKLNEE 504
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1907165194 1129 VTVLRGENATAK----SLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSS 1177
Cdd:TIGR04523 505 KKELEEKVKDLTkkisSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKE 557
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
623-961 |
1.89e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.31 E-value: 1.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 623 QQAMEELKVsFSKGIGTDSAEFAELKTQIERLRLDYQHEIE--SLQS-KQDSERSAHAKEMETMQAKLMKI---IKEKED 696
Cdd:TIGR02169 173 EKALEELEE-VEENIERLDLIIDEKRQQLERLRREREKAERyqALLKeKREYEGYELLKEKEALERQKEAIerqLASLEE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 697 SLEAVKARLDSAEDQhLVEMEDTLNKLqEAEIK----------KEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSS 766
Cdd:TIGR02169 252 ELEKLTEEISELEKR-LEEIEQLLEEL-NKKIKdlgeeeqlrvKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEA 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 767 ELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEndiaeimkmsgdnssqltkmnDELRLKERSVEELQLKLTKANENAS 846
Cdd:TIGR02169 330 EIDKLLAEIEELEREIEEERKRRDKLTEEYAELK---------------------EELEDLRAELEEVDKEFAETRDELK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 847 FLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELekkmetsyNQCQDLKAKYEKASSETKTKHEEI------LQNL 920
Cdd:TIGR02169 389 DYREKLEKLKREINELKRELDRLQEELQRLSEELADLN--------AAIAGIEAKINELEEEKEDKALEIkkqewkLEQL 460
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1907165194 921 QKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTA 961
Cdd:TIGR02169 461 AADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARA 501
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
352-1129 |
5.86e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 5.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 352 LQEALKEKQQHIEQLLAERD--------LERAEVAKATSHVGEIEQELALARDGHDQhVLELEAKMDQLRTMVEAADREK 423
Cdd:TIGR02169 189 LDLIIDEKRQQLERLRREREkaeryqalLKEKREYEGYELLKEKEALERQKEAIERQ-LASLEEELEKLTEEISELEKRL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 424 VELLNQLEEEKRKVEDLQfrvEEESitkgdLETQTKLE--HARTKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIM 501
Cdd:TIGR02169 268 EEIEQLLEELNKKIKDLG---EEEQ-----LRVKEKIGelEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 502 ELEKDLALRAQEVAELRRRLESSKppgdvdmslsllQEISALQEKLEAIHTDHQgemTSLKEHFGARE--EAFQKEIKAL 579
Cdd:TIGR02169 340 ELEREIEEERKRRDKLTEEYAELK------------EELEDLRAELEEVDKEFA---ETRDELKDYREklEKLKREINEL 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 580 HTATEKLSKENESLRSKLDHANKENSDV---IALWKSKLETAIASHQQAMEELKvSFSKGIGTDSAEFAELKTQIERLrl 656
Cdd:TIGR02169 405 KRELDRLQEELQRLSEELADLNAAIAGIeakINELEEEKEDKALEIKKQEWKLE-QLAADLSKYEQELYDLKEEYDRV-- 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 657 dyQHEIESLQSKQDsERSAHAKEMETMQAKLMKIIKEKEDSLEAVK---ARLDSAEDQHLVEMEDTL-NKLQEAEIKKEk 732
Cdd:TIGR02169 482 --EKELSKLQRELA-EAEAQARASEERVRGGRAVEEVLKASIQGVHgtvAQLGSVGERYATAIEVAAgNRLNNVVVEDD- 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 733 faSTSEEAVSAQTRMQDT------VNKLHQKEeqfnvlsSELEKLREN-LTDMEAKFKEKDDREDQLVK----------- 794
Cdd:TIGR02169 558 --AVAKEAIELLKRRKAGratflpLNKMRDER-------RDLSILSEDgVIGFAVDLVEFDPKYEPAFKyvfgdtlvved 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 795 ---AKE--------KLENDIAEIM-KMSGDNSSQLTKMNDELRLKERsVEELQLKLTKANENASFLQKSIGEvtLKAEQS 862
Cdd:TIGR02169 629 ieaARRlmgkyrmvTLEGELFEKSgAMTGGSRAPRGGILFSRSEPAE-LQRLRERLEGLKRELSSLQSELRR--IENRLD 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 863 QQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEA----- 937
Cdd:TIGR02169 706 ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAlndle 785
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 938 NRDLMQDMEELKTQADKAKAA-QTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKskel 1016
Cdd:TIGR02169 786 ARLSHSRIPEIQAELSKLEEEvSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNG---- 861
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1017 lsvenqKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVtshQKLEEERSVLNNQLLEMKKRESEFRKD 1096
Cdd:TIGR02169 862 ------KKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKI---EELEAQIEKKRKRLSELKAKLEALEEE 932
|
810 820 830
....*....|....*....|....*....|...
gi 1907165194 1097 ADEEKASLQKSISLTSALLTEKDAELEKLRNEV 1129
Cdd:TIGR02169 933 LSEIEDPKGEDEEIPEEELSLEDVQAELQRVEE 965
|
|
| CLIP1_ZNF |
pfam16641 |
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of ... |
1289-1305 |
9.56e-08 |
|
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of the cytoplasmic linker protein CLIP1 (CLIP170). It forms a complex with the CAP-Gly domain of Dynactin.
Pssm-ID: 465212 Cd Length: 17 Bit Score: 49.00 E-value: 9.56e-08
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
658-1254 |
3.03e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 55.36 E-value: 3.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 658 YQHEIESLQSKQDSERSAHAKEMetmqaklmKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKKEKFASTS 737
Cdd:pfam02463 140 QGGKIEIIAMMKPERRLEIEEEA--------AGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALE 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 738 EEAVSAQTRMQD---TVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKM-SGDN 813
Cdd:pfam02463 212 YYQLKEKLELEEeylLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEeLKLL 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 814 SSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAArKHEEEKKELEEKLLELEKKMETSYN 893
Cdd:pfam02463 292 AKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELK-ELEIKREAEEEEEEELEKLQEKLEQ 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 894 QCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTK 973
Cdd:pfam02463 371 LEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEK 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 974 EKTETLASLEDTKQ----------TNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEE-FKKEIETLKQAAAQKS 1042
Cdd:pfam02463 451 EELEKQELKLLKDElelkksedllKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLaLIKDGVGGRIISAHGR 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1043 QQLSALQEENVKLAEELGRTRDEVTSHQKLEEERS---VLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKD 1119
Cdd:pfam02463 531 LGDLGVAVENYKVAISTAVIVEVSATADEVEERQKlvrALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDK 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1120 AELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQIDFL 1199
Cdd:pfam02463 611 ATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELA 690
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 1907165194 1200 NSVIVDLQRKNQDLKMKVEMMSEAALNGNGEDLNSYDSDDQEKQSKKKPRLFCDI 1254
Cdd:pfam02463 691 KEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKI 745
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
331-718 |
4.17e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 4.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 331 RTGLLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKAtshvgeieqelalardghDQHVLELEAKMD 410
Cdd:TIGR02169 651 KSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRI------------------ENRLDELSQELS 712
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 411 QLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARTKELEQSLLFEKTKADKLQRELEDTR 490
Cdd:TIGR02169 713 DASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR 792
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 491 VATVSEKSRimELEKdlalraqEVAELRRRLEsskppgDVDMSLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREE 570
Cdd:TIGR02169 793 IPEIQAELS--KLEE-------EVSRIEARLR------EIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE 857
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 571 AFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALwKSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKtQ 650
Cdd:TIGR02169 858 NLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQ-LRELERKIEELEAQIEKKRKRLSELKAKLEALEEELS-E 935
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 651 IERLRLDYQHEIESLQSKQD--SERSAHAKEMETMQAKLMKIIKEKEDsleaVKARLDSAEDQHLVEMED 718
Cdd:TIGR02169 936 IEDPKGEDEEIPEEELSLEDvqAELQRVEEEIRALEPVNMLAIQEYEE----VLKRLDELKEKRAKLEEE 1001
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
352-1092 |
5.50e-07 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 54.06 E-value: 5.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 352 LQEALKEKQQHIEQLLAERDLERAEVAKATSHVG-----EIEQELALARDGHDQhvleLEAKMDQLRTMVEaaDREKVEL 426
Cdd:pfam10174 1 LQAQLRDLQRENELLRRELDIKESKLGSSMNSIKtfwspELKKERALRKEEAAR----ISVLKEQYRVTQE--ENQHLQL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 427 LNQ-LEEEKRKVEDLQFRVEEESITKGdletQTKLEHARTKEL-EQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELE 504
Cdd:pfam10174 75 TIQaLQDELRAQRDLNQLLQQDFTTSP----VDGEDKFSTPELtEENFRRLQSEHERQAKELFLLRKTLEEMELRIETQK 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 505 KDLALRAQEVAELRRRLESSKPP-----GDVDMSLSLLQEISALQEkLEAIHTDHQGEMTSLKEHFGAREEAFQK--EIK 577
Cdd:pfam10174 151 QTLGARDESIKKLLEMLQSKGLPkksgeEDWERTRRIAEAEMQLGH-LEVLLDQKEKENIHLREELHRRNQLQPDpaKTK 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 578 ALHTATEKlskeNESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKgigtdsAEFaeLKTQIERLRLD 657
Cdd:pfam10174 230 ALQTVIEM----KDTKISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSH------SKF--MKNKIDQLKQE 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 658 YQH---EIESLQSK------QDSERSAHA---KEMETMQAKLMKIIKEKEDSLeavKARLDsaedqhlvEMEDTLNKlqe 725
Cdd:pfam10174 298 LSKkesELLALQTKletltnQNSDCKQHIevlKESLTAKEQRAAILQTEVDAL---RLRLE--------EKESFLNK--- 363
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 726 aeiKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLtdmeakfKEKDDREDQLVKAKEKLENDiae 805
Cdd:pfam10174 364 ---KTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQL-------RDKDKQLAGLKERVKSLQTD--- 430
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 806 imkmSGDNSSQLTKMNDELRLKERSVEELQLKltKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELE 885
Cdd:pfam10174 431 ----SSNTDTALTTLEEALSEKERIIERLKEQ--REREDRERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEH 504
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 886 KKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQT-AEDA 964
Cdd:pfam10174 505 ASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAeVERL 584
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 965 MQIMEQMTKEKT---ETLASLEDTKQTNARLQNeldtLKENNLKTVEELNKSKELlsvenQKMEEFKKEIETLKQAAAQk 1041
Cdd:pfam10174 585 LGILREVENEKNdkdKKIAELESLTLRQMKEQN----KKVANIKHGQQEMKKKGA-----QLLEEARRREDNLADNSQQ- 654
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|..
gi 1907165194 1042 sQQLSALQEENVKLAEELGRTRDEVTS-HQKLEEERSVLNNQLLEMKKRESE 1092
Cdd:pfam10174 655 -LQLEELMGALEKTRQELDATKARLSStQQSLAEKDGHLTNLRAERRKQLEE 705
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
404-1173 |
5.91e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 54.28 E-value: 5.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 404 ELEAKMDQLRTMVEAADREKVELlNQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARTKELEQSLLFEKTKADKLQ 483
Cdd:TIGR00606 225 QITSKEAQLESSREIVKSYENEL-DPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQL 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 484 RELEDTRVATVSEKSR-IMELEKDLALRAQEvaelRRRLESSKPPGDVDMSLSLLQEiSALQEKLEAIHTDHQGEMTSLK 562
Cdd:TIGR00606 304 NDLYHNHQRTVREKEReLVDCQRELEKLNKE----RRLLNQEKTELLVEQGRLQLQA-DRHQEHIRARDSLIQSLATRLE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 563 EHFGAREEAFQKEIKALHTatekLSKENESLRSKLdhankensdvIALWKSKLETAIASHQQAMEELKVSFSKGIGTDSA 642
Cdd:TIGR00606 379 LDGFERGPFSERQIKNFHT----LVIERQEDEAKT----------AAQLCADLQSKERLKQEQADEIRDEKKGLGRTIEL 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 643 EFAELKTQIERLRldyqHEIESLQSKQDSERSAHAKEMETMQAK----------LMKIIKEKEDSLEAVKARLDS---AE 709
Cdd:TIGR00606 445 KKEILEKKQEELK----FVIKELQQLEGSSDRILELDQELRKAErelskaeknsLTETLKKEVKSLQNEKADLDRklrKL 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 710 DQHLVEMEDTLNKLQEAEIKKEKFASTSEEAVSAQTRMQDTV--------------NKLHQKEEQFNVLSSELEKLRENL 775
Cdd:TIGR00606 521 DQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELtsllgyfpnkkqleDWLHSKSKEINQTRDRLAKLNKEL 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 776 TDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKmSGDNSSQLTKMNDELrlkERSVEELQLKLTKANENASFLQKSIGEV 855
Cdd:TIGR00606 601 ASLEQNKNHINNELESKEEQLSSYEDKLFDVCG-SQDEESDLERLKEEI---EKSSKQRAMLAGATAVYSQFITQLTDEN 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 856 T---------LKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLAD 926
Cdd:TIGR00606 677 QsccpvcqrvFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKV 756
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 927 TEDklkaAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEktetlasLEDTKQTNARLQNELDTLkeNNLKT 1006
Cdd:TIGR00606 757 NRD----IQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQME-------LKDVERKIAQQAAKLQGS--DLDRT 823
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1007 VEELNKSKEllsVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEM 1086
Cdd:TIGR00606 824 VQQVNQEKQ---EKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSL 900
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1087 KKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGE----NATAKSLHSVVQTLESD-KVKLELKVK 1161
Cdd:TIGR00606 901 IREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKvkniHGYMKDIENKIQDGKDDyLKQKETELN 980
|
810
....*....|..
gi 1907165194 1162 NLELQLKENKRQ 1173
Cdd:TIGR00606 981 TVNAQLEECEKH 992
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
335-594 |
6.19e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.15 E-value: 6.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 335 LTETSSRYARKISGTTALQEALKEKQQHIEQLlAERDLERAEVAKATSHVGEIEQELALARDGHDQhVLELEAKMDQLRT 414
Cdd:COG4913 622 LEEELAEAEERLEALEAELDALQERREALQRL-AEYSWDEIDVASAEREIAELEAELERLDASSDD-LAALEEQLEELEA 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 415 MVEAADREKVELLNQLEEEKRKVEDLQFRVEeesitkgdlETQTKLEHA-RTKELEQSLLFEKtkadKLQRELEDTRVAT 493
Cdd:COG4913 700 ELEELEEELDELKGEIGRLEKELEQAEEELD---------ELQDRLEAAeDLARLELRALLEE----RFAAALGDAVERE 766
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 494 VSEK--SRIMELEKDLALRAQEVAELRRRLESSKPPGDVDMSLSL--LQEISALQEKLEAIH-TDHQGEMTSLKEHFGAR 568
Cdd:COG4913 767 LRENleERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLesLPEYLALLDRLEEDGlPEYEERFKELLNENSIE 846
|
250 260
....*....|....*....|....*...
gi 1907165194 569 E-EAFQKEIK-ALHTATEKLSKENESLR 594
Cdd:COG4913 847 FvADLLSKLRrAIREIKERIDPLNDSLK 874
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
360-1110 |
7.06e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.97 E-value: 7.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 360 QQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDghdQHVLELEAKMDQLR----TMVEAADRE---KVELLNQLEE 432
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLR---QSVIDLQTKLQEMQmerdAMADIRRREsqsQEDLRNQLQN 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 433 EKRKVED---LQFRVEEESITKGDLETQTKLEHARTKELEQSLL--FEKTKADKLQrelEDTRVATV------SEKSRIM 501
Cdd:pfam15921 150 TVHELEAakcLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILvdFEEASGKKIY---EHDSMSTMhfrslgSAISKIL 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 502 -ELEKDLALRAQEVAELRRRLESSKPPGDVDMSLSLLQEisalQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALH 580
Cdd:pfam15921 227 rELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQH----QDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLE 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 581 TATEKLSKEN--------------ESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEElKVSFSKgigtdsaEFAE 646
Cdd:pfam15921 303 IIQEQARNQNsmymrqlsdlestvSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTE-RDQFSQ-------ESGN 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 647 LKTQIERLRLD-YQHEIE-SLQSKQDSE----------------RSAHAKEMETMQAK-LMKIIKEK-----EDSLEAVK 702
Cdd:pfam15921 375 LDDQLQKLLADlHKREKElSLEKEQNKRlwdrdtgnsitidhlrRELDDRNMEVQRLEaLLKAMKSEcqgqmERQMAAIQ 454
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 703 ARLDSAED-----QHLVEMEDTLNKLQEAEIKKEKFASTSEEAVSaqtrmqDTVNKLHQKEEQFNVLSSELEKLRENLTD 777
Cdd:pfam15921 455 GKNESLEKvssltAQLESTKEMLRKVVEELTAKKMTLESSERTVS------DLTASLQEKERAIEATNAEITKLRSRVDL 528
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 778 MEAKFKEKDDREDQLVKAKEKLE---------NDIAEIMKMSGDNSSQLT-------------KMNDELRLKERSVEELQ 835
Cdd:pfam15921 529 KLQELQHLKNEGDHLRNVQTECEalklqmaekDKVIEILRQQIENMTQLVgqhgrtagamqveKAQLEKEINDRRLELQE 608
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 836 LKLTKANENASFLQKSIGEVTLKAEQSQQ-QAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHE 914
Cdd:pfam15921 609 FKILKDKKDAKIRELEARVSDLELEKVKLvNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSE 688
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 915 EILQNLQKMladtEDKLKAAQ---EANRDLMQDMEELKTQADKAkaaqtaedAMQIMEQMTKEKTETLAsledtkqtnar 991
Cdd:pfam15921 689 EMETTTNKL----KMQLKSAQselEQTRNTLKSMEGSDGHAMKV--------AMGMQKQITAKRGQIDA----------- 745
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 992 LQNELDTLKEnnlkTVEELNKSKELLSVENQKMeefkkeietlkqaaaqkSQQLSALQEENVKLAEELGRTRDEvtsHQK 1071
Cdd:pfam15921 746 LQSKIQFLEE----AMTNANKEKHFLKEEKNKL-----------------SQELSTVATEKNKMAGELEVLRSQ---ERR 801
|
810 820 830
....*....|....*....|....*....|....*....
gi 1907165194 1072 LEEErsvLNNQLLEMKKRESEFRKDADEEKASLQKSISL 1110
Cdd:pfam15921 802 LKEK---VANMEVALDKASLQFAECQDIIQRQEQESVRL 837
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
799-1187 |
8.71e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 8.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 799 LENDIAEIMKMSGdnsSQLTKMNDELRlkerSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELE 878
Cdd:TIGR02169 140 LQGDVTDFISMSP---VERRKIIDEIA----GVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAER 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 879 ekllelekkmetsYNQCQDLKAKYE-KASSETKTKHEEILQNLQKMLADTE---DKLKAAQEANRDLMQDMEELKTQADK 954
Cdd:TIGR02169 213 -------------YQALLKEKREYEgYELLKEKEALERQKEAIERQLASLEeelEKLTEEISELEKRLEEIEQLLEELNK 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 955 AKAAQTAEDAMQIMEQMTkektETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETL 1034
Cdd:TIGR02169 280 KIKDLGEEEQLRVKEKIG----ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKL 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1035 KQAAAQKSQQLSAL----QEENVKLAEELGRTRDEVTSHQKLEEERSVLN---NQLLEMKKRESEFRKDADEEKASLQKS 1107
Cdd:TIGR02169 356 TEEYAELKEELEDLraelEEVDKEFAETRDELKDYREKLEKLKREINELKrelDRLQEELQRLSEELADLNAAIAGIEAK 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1108 ISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTlESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEE 1187
Cdd:TIGR02169 436 INELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE-EYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEE 514
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
344-629 |
9.50e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 9.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 344 RKISGTTALQEALKEKQQHIEQLLAERDLERAEVAkatshvgEIEQELALARDGHDQHVLELEAKMDQLRTMVEAA---- 419
Cdd:TIGR02168 726 RQISALRKDLARLEAEVEQLEERIAQLSKELTELE-------AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLkeel 798
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 420 ---DREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARTKELEQSLLF-------EKTKADKLQRELEDT 489
Cdd:TIGR02168 799 kalREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESlaaeieeLEELIEELESELEAL 878
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 490 RVATVSEKSRIMELEKDLALRAQEVAELRRRL--------ESSKPPGDVDMSLS-LLQEISALQEKLEAIHTDHQGEMTS 560
Cdd:TIGR02168 879 LNERASLEEALALLRSELEELSEELRELESKRselrreleELREKLAQLELRLEgLEVRIDNLQERLSEEYSLTLEEAEA 958
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907165194 561 LKEHFGAREEAFQKEIKALHTATEKLSKEN-------ESLRSKLDHANKENSDvialwkskLETAIASHQQAMEEL 629
Cdd:TIGR02168 959 LENKIEDDEEEARRRLKRLENKIKELGPVNlaaieeyEELKERYDFLTAQKED--------LTEAKETLEEAIEEI 1026
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
585-1163 |
9.91e-07 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 53.52 E-value: 9.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 585 KLSKENESLRSKLDHANKENSDVialwKSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELK-----TQIERLRLDYQ 659
Cdd:TIGR01612 1115 KIKDDIKNLDQKIDHHIKALEEI----KKKSENYIDEIKAQINDLEDVADKAISNDDPEEIEKKienivTKIDKKKNIYD 1190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 660 H------EIESLQSKQDSERSAHAKEMETMQAK----LMKIIKEKEDSLEAVKArldsaedqhlveMEDTLNKLQEAEIK 729
Cdd:TIGR01612 1191 EikkllnEIAEIEKDKTSLEEVKGINLSYGKNLgklfLEKIDEEKKKSEHMIKA------------MEAYIEDLDEIKEK 1258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 730 KEKFASTSEEAVSAQTRMqDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKM 809
Cdd:TIGR01612 1259 SPEIENEMGIEMDIKAEM-ETFNISHDDDKDHHIISKKHDENISDIREKSLKIIEDFSEESDINDIKKELQKNLLDAQKH 1337
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 810 SGD---------NSSQLTKMN------DELRLKERSVEELQLKLTKANENASFLQKSIGE-VTLKAEQSQQQAA--RKHE 871
Cdd:TIGR01612 1338 NSDinlylneiaNIYNILKLNkikkiiDEVKEYTKEIEENNKNIKDELDKSEKLIKKIKDdINLEECKSKIESTldDKDI 1417
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 872 EEKKELEEKLLELEKKMETSYNqcqdlkaKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQE-ANRDLMQDMEELKT 950
Cdd:TIGR01612 1418 DECIKKIKELKNHILSEESNID-------TYFKNADENNENVLLLFKNIEMADNKSQHILKIKKDnATNDHDFNINELKE 1490
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 951 QADKAKAAQTAEDA--------MQIMEQMTKEKTETLasledTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVE-- 1020
Cdd:TIGR01612 1491 HIDKSKGCKDEADKnakaieknKELFEQYKKDVTELL-----NKYSALAIKNKFAKTKKDSEIIIKEIKDAHKKFILEae 1565
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1021 --NQKMEEFKKEIETLKQAAAQKSQ--------QLSALQEEN--VKLAEELGRTRDEVTSHQKLEEERSVL--NNQLLEM 1086
Cdd:TIGR01612 1566 ksEQKIKEIKKEKFRIEDDAAKNDKsnkaaidiQLSLENFENkfLKISDIKKKINDCLKETESIEKKISSFsiDSQDTEL 1645
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1087 KKRESEFR--KDADEEKASLQKSISLTSALLTEKDAELEKLRN---------EVTVLRGENATAKSLHsvvQTLESDKVK 1155
Cdd:TIGR01612 1646 KENGDNLNslQEFLESLKDQKKNIEDKKKELDELDSEIEKIEIdvdqhkknyEIGIIEKIKEIAIANK---EEIESIKEL 1722
|
....*...
gi 1907165194 1156 LELKVKNL 1163
Cdd:TIGR01612 1723 IEPTIENL 1730
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
912-1074 |
1.19e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.85 E-value: 1.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 912 KHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAmqimEQMTKEKTETLASLEDTKQTNAR 991
Cdd:COG4717 85 EKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEAL----EAELAELPERLEELEERLEELRE 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 992 LQNELDTLKENNLKTVEELNKSKELLSVENQK-MEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQ 1070
Cdd:COG4717 161 LEEELEELEAELAELQEELEELLEQLSLATEEeLQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAA 240
|
....
gi 1907165194 1071 KLEE 1074
Cdd:COG4717 241 LEER 244
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
408-1097 |
1.43e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 53.05 E-value: 1.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 408 KMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGD-LETQTKLEhartKELEQSLLFEKTKADKLQREL 486
Cdd:TIGR00618 174 PLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHErKQVLEKEL----KHLREALQQTQQSHAYLTQKR 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 487 EdtrvaTVSEKSRIMELEKDLALRAQEVAELRRRLESSKPPGDVDMSLSLLQEISA----LQEKLEAIHTDHQGEMTSLK 562
Cdd:TIGR00618 250 E-----AQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKavtqIEQQAQRIHTELQSKMRSRA 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 563 EHFGAREEAFQKE---------IKALHTATEKLSKENESLRSKLDHANKENSDV--IALWKSKLETAIASHQQAMEELKV 631
Cdd:TIGR00618 325 KLLMKRAAHVKQQssieeqrrlLQTLHSQEIHIRDAHEVATSIREISCQQHTLTqhIHTLQQQKTTLTQKLQSLCKELDI 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 632 --SFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQ--DSERSAHAKEMETMQAKLMKIIKEKEDSLEAVK----- 702
Cdd:TIGR00618 405 lqREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAaaITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEqihlq 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 703 -ARLDSAEDQHLVEMEDTLNKLQEAEIKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAK 781
Cdd:TIGR00618 485 eTRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQ 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 782 FKEKDDREDQLVKAKEKLENDIAEIMKMSgDNSSQLTKMNDELRLKERsvEELQLKLTKANENASFLQKSIGEVTLKAEQ 861
Cdd:TIGR00618 565 MQEIQQSFSILTQCDNRSKEDIPNLQNIT-VRLQDLTEKLSEAEDMLA--CEQHALLRKLQPEQDLQDVRLHLQQCSQEL 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 862 SQQQAA--RKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLkaaqEANR 939
Cdd:TIGR00618 642 ALKLTAlhALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHI----EEYD 717
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 940 DLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKE---------NNLKTVEEL 1010
Cdd:TIGR00618 718 REFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAElshlaaeiqFFNRLREED 797
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1011 NKS-KELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENvklaeelGRTRDEVTSHQKLEEERSVLNNQLLEMKKR 1089
Cdd:TIGR00618 798 THLlKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEK-------SATLGEITHQLLKYEECSKQLAQLTQEQAK 870
|
....*...
gi 1907165194 1090 ESEFRKDA 1097
Cdd:TIGR00618 871 IIQLSDKL 878
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
988-1213 |
1.89e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 52.61 E-value: 1.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 988 TNARLQNELDTLKENNLKTVEE------LNKSKELLsvenQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELG- 1060
Cdd:PRK11281 37 TEADVQAQLDALNKQKLLEAEDklvqqdLEQTLALL----DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDe 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1061 --RTRDEVTSHQKLEEERSVLNNQLLEMKKRESEfrkdADEEKASLQKSISLTSALLTEKDAELEKLRNEvtvLRGENAT 1138
Cdd:PRK11281 113 etRETLSTLSLRQLESRLAQTLDQLQNAQNDLAE----YNSQLVSLQTQPERAQAALYANSQRLQQIRNL---LKGGKVG 185
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907165194 1139 AKSLHSvvqtleSDKVKLELKVKNLELQLKENKRQLsssSGNTDAQAEEderaqESQIDFLNSVIVDLQRKNQDL 1213
Cdd:PRK11281 186 GKALRP------SQRVLLQAEQALLNAQNDLQRKSL---EGNTQLQDLL-----QKQRDYLTARIQRLEHQLQLL 246
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
354-805 |
2.07e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.08 E-value: 2.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 354 EALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHvlELEAKMDQLRTMVEAADREKVELLNQLEEE 433
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL--PLYQELEALEAELAELPERLEELEERLEEL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 434 KRKVEDLQFRVEEesitkgdletQTKLEHARTKELEQSLLFEKTKADKLQRELEDTRvatvsekSRIMELEKDLALRAQE 513
Cdd:COG4717 159 RELEEELEELEAE----------LAELQEELEELLEQLSLATEEELQDLAEELEELQ-------QRLAELEEELEEAQEE 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 514 VAELRRRLESSKPPGDVDMSLSLLQEISALQEKLEAIHTdHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESL 593
Cdd:COG4717 222 LEELEEELEQLENELEAAALEERLKEARLLLLIAAALLA-LLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASL 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 594 RSKLDHANkensdvialwksKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRldyqheiESLQSKQDSER 673
Cdd:COG4717 301 GKEAEELQ------------ALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQ-------ELLREAEELEE 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 674 SAHAKEMETMQAKLMKiiKEKEDSLEAVKARLDSAEdqhlvEMEDTLNKLQEAEIKKEKFASTSEEAVSAQTRmQDTVNK 753
Cdd:COG4717 362 ELQLEELEQEIAALLA--EAGVEDEEELRAALEQAE-----EYQELKEELEELEEQLEELLGELEELLEALDE-EELEEE 433
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1907165194 754 LHQKEEQFNVLSSELEKLRENLTDMEAKFK--EKDDREDQLVKAKEKLENDIAE 805
Cdd:COG4717 434 LEELEEELEELEEELEELREELAELEAELEqlEEDGELAELLQELEELKAELRE 487
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
661-1089 |
2.14e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.08 E-value: 2.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 661 EIESLQSKQDSERSAHAKEMETMQAKLmKIIKEKEDSLEAVKARLDSAEDQhLVEMEDTLNKLQEAEIKKEKfastseea 740
Cdd:COG4717 54 EADELFKPQGRKPELNLKELKELEEEL-KEAEEKEEEYAELQEELEELEEE-LEELEAELEELREELEKLEK-------- 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 741 vsaQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEndiAEIMKMSGDNSSQLTKM 820
Cdd:COG4717 124 ---LLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELE---ELLEQLSLATEEELQDL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 821 NDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDL-- 898
Cdd:COG4717 198 AEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIag 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 899 -----------------KAKYEKASSETKTKHEEILQNLQKM-----LADTEDKLKAAQEANRDLMQDMEELKTQADKAK 956
Cdd:COG4717 278 vlflvlgllallflllaREKASLGKEAEELQALPALEELEEEeleelLAALGLPPDLSPEELLELLDRIEELQELLREAE 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 957 AAQTAEDAMQIMEQMTK-------EKTETLASLEDTKQTNARLQNELDTLKENnlktVEELNKSKELLSVENQKmEEFKK 1029
Cdd:COG4717 358 ELEEELQLEELEQEIAAllaeagvEDEEELRAALEQAEEYQELKEELEELEEQ----LEELLGELEELLEALDE-EELEE 432
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1030 EIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEvTSHQKLEEERSVLNNQLLEMKKR 1089
Cdd:COG4717 433 ELEELEEELEELEEELEELREELAELEAELEQLEED-GELAELLQELEELKAELRELAEE 491
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
764-1001 |
5.43e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 5.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 764 LSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKane 843
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA--- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 844 nasfLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLElekkmetsynqcqdlkAKYEKASSETKTKHEEILQNLQKM 923
Cdd:COG4942 102 ----QKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRR----------------LQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907165194 924 LADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTaedamQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKE 1001
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEALKAERQ-----KLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
637-1134 |
5.90e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.83 E-value: 5.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 637 IGTDSAEFAELKTQIErlrldyqhEIESLQSKQDSERSAHAKEMETMQ------AKLMKIIKEKEDSLEAVKARLDSAED 710
Cdd:PRK03918 195 IKEKEKELEEVLREIN--------EISSELPELREELEKLEKEVKELEelkeeiEELEKELESLEGSKRKLEEKIRELEE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 711 QhLVEMEDTLNKLQEAEIKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEakfkEKDDRED 790
Cdd:PRK03918 267 R-IEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELE----EKEERLE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 791 QLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKER----SVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQA 866
Cdd:PRK03918 342 ELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRltglTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEI 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 867 ARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYE---KASSETKTKHEEILQNLQKMLADTEDKLKAAQE--ANRDL 941
Cdd:PRK03918 422 KELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTaelKRIEKELKEIEEKERKLRKELRELEKVLKKESEliKLKEL 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 942 MQDMEELKTQA---DKAKAAQTAEDAMQIMEQMTKEKTE------TLASLEDTKQTNARLQNELDTLKE---NNLKTVEE 1009
Cdd:PRK03918 502 AEQLKELEEKLkkyNLEELEKKAEEYEKLKEKLIKLKGEikslkkELEKLEELKKKLAELEKKLDELEEelaELLKELEE 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1010 LN-KSKELLSVENQKMEEFKKEIETLKQAAAQ---KSQQLSALQEENVKLAEELGRTRDEVTS----------------- 1068
Cdd:PRK03918 582 LGfESVEELEERLKELEPFYNEYLELKDAEKElerEEKELKKLEEELDKAFEELAETEKRLEElrkeleelekkyseeey 661
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907165194 1069 ------HQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKsisltsalLTEKDAELEKL---RNEVTVLRG 1134
Cdd:PRK03918 662 eelreeYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEE--------REKAKKELEKLekaLERVEELRE 728
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
334-1224 |
6.27e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 50.94 E-value: 6.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 334 LLTETSSRYARKISGTTALQEALKEKQQHIEQLlaERDLERAEVAKATSHVGEIEQELALARdgHDQHVLELEAKMDQLR 413
Cdd:pfam01576 76 ILHELESRLEEEEERSQQLQNEKKKMQQHIQDL--EEQLDEEEAARQKLQLEKVTTEAKIKK--LEEDILLLEDQNSKLS 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 414 TMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARTKELeqsllfEKTKAdKLQRELEDTRVAT 493
Cdd:pfam01576 152 KERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQEL------EKAKR-KLEGESTDLQEQI 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 494 VSEKSRIMELEKDLALRAQEVAELRRRLE-SSKPPGDVDMSLSLLQ-EISALQEKLEAiHTDHQGEMTSLKEHFGAREEA 571
Cdd:pfam01576 225 AELQAQIAELRAQLAKKEEELQAALARLEeETAQKNNALKKIRELEaQISELQEDLES-ERAARNKAEKQRRDLGEELEA 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 572 FQKEIKalhtATEKLSKENESLRSKLDHAnkensdvIALWKSKLETAIASHQQAMEELKVSFSKGIgtdsAEFAELKTQI 651
Cdd:pfam01576 304 LKTELE----DTLDTTAAQQELRSKREQE-------VTELKKALEEETRSHEAQLQEMRQKHTQAL----EELTEQLEQA 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 652 ERLRLDYQHEIESLQskqdSERSAHAKEMETMQAKLMKI---IKEKEDSLEAVKARLDSAEDQHlVEMEDTLNKLQ---- 724
Cdd:pfam01576 369 KRNKANLEKAKQALE----SENAELQAELRTLQQAKQDSehkRKKLEGQLQELQARLSESERQR-AELAEKLSKLQsele 443
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 725 -------EAEIKKEKFastSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKE 797
Cdd:pfam01576 444 svssllnEAEGKNIKL---SKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLS 520
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 798 KLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQS--QQQAARKHEEEKK 875
Cdd:pfam01576 521 TLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLlvDLDHQRQLVSNLE 600
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 876 ELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLadteDKLKAAQEANRDLMQDMEEL-KTQADK 954
Cdd:pfam01576 601 KKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEAL----EAKEELERTNKQLRAEMEDLvSSKDDV 676
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 955 AKAAQTAEDAMQIMEQMTKEKTETLASLED----TKQTNARLQNELDTLK---ENNLKTVEELNKSK-ELLSVENQKME- 1025
Cdd:pfam01576 677 GKNVHELERSKRALEQQVEEMKTQLEELEDelqaTEDAKLRLEVNMQALKaqfERDLQARDEQGEEKrRQLVKQVRELEa 756
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1026 EFKKEIETLKQAAAQKSQQLSALQEENVKLaEELGRTRDE-VTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASL 1104
Cdd:pfam01576 757 ELEDERKQRAQAVAAKKKLELDLKELEAQI-DAANKGREEaVKQLKKLQAQMKDLQRELEEARASRDEILAQSKESEKKL 835
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1105 qKSISLTSALLTEKDAELEKLRNEVTVLRGE-------NATAKSLhsvvqtLESDKVKLELKVKNLELQLKENKrqlsss 1177
Cdd:pfam01576 836 -KNLEAELLQLQEDLAASERARRQAQQERDEladeiasGASGKSA------LQDEKRRLEARIAQLEEELEEEQ------ 902
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907165194 1178 sGNTDAQAEEDERAQeSQIDFLNSVIV--------------DLQRKNQDLKMKVEMMSEAA 1224
Cdd:pfam01576 903 -SNTELLNDRLRKST-LQVEQLTTELAaerstsqksesarqQLERQNKELKAKLQEMEGTV 961
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
896-1218 |
1.09e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.04 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 896 QDLKAKYEKASSETKTKHEEIlQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKA-----AQTAEDAMQIMEQ 970
Cdd:PRK02224 240 DEVLEEHEERREELETLEAEI-EDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAeagldDADAEAVEARREE 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 971 MTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVE--------------ELNKSKELLSVENQKMEEFKKEIETLKQ 1036
Cdd:PRK02224 319 LEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEEraeelreeaaelesELEEAREAVEDRREEIEELEEEIEELRE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1037 AAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQ-KLEEERSVL--NNQLLEMKK--------RESEFRKDADEEKASLQ 1105
Cdd:PRK02224 399 RFGDAPVDLGNAEDFLEELREERDELREREAELEaTLRTARERVeeAEALLEAGKcpecgqpvEGSPHVETIEEDRERVE 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1106 ksisltsalltEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQ---LKENKRQLSSSSGNTD 1182
Cdd:PRK02224 479 -----------ELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERretIEEKRERAEELRERAA 547
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1907165194 1183 A------QAEEDERAQESQIDFLNSVIVDLQRKNQDLKMKVE 1218
Cdd:PRK02224 548 EleaeaeEKREAAAEAEEEAEEAREEVAELNSKLAELKERIE 589
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
404-1254 |
1.17e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 50.05 E-value: 1.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 404 ELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQ----------FRVEEESITKGDLETQTKlehARTKELEQSLL 473
Cdd:TIGR01612 541 EIEAGLKESYELAKNWKKLIHEIKKELEEENEDSIHLEkeikdlfdkyLEIDDEIIYINKLKLELK---EKIKNISDKNE 617
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 474 FEKtKADKLQRELEDTRvATVSEKSRIMELEKDLALRAQEVAELRRRLESSKP-PGDVDmslSLLQEISALQEKLEAIHT 552
Cdd:TIGR01612 618 YIK-KAIDLKKIIENNN-AYIDELAKISPYQVPEHLKNKDKIYSTIKSELSKIyEDDID---ALYNELSSIVKENAIDNT 692
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 553 DHQGEMTSLKehfgAREEAFQKEIKALHTATEKLSKEN-ESLRSKLdhankenSDVIALWKSKLETAIASH-QQAMEELK 630
Cdd:TIGR01612 693 EDKAKLDDLK----SKIDKEYDKIQNMETATVELHLSNiENKKNEL-------LDIIVEIKKHIHGEINKDlNKILEDFK 761
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 631 V---SFSKGIGTDSAEFAEL---KTQIERLRLDYQHE-----IESLQSKQDSERSA-HAKEMETMQAKLMKIIKE----K 694
Cdd:TIGR01612 762 NkekELSNKINDYAKEKDELnkyKSKISEIKNHYNDQinidnIKDEDAKQNYDKSKeYIKTISIKEDEIFKIINEmkfmK 841
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 695 EDSLEAV----------KARLDSAEDQhlveMEDTLNKLQeAEIKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVL 764
Cdd:TIGR01612 842 DDFLNKVdkfinfenncKEKIDSEHEQ----FAELTNKIK-AEISDDKLNDYEKKFNDSKSLINEINKSIEEEYQNINTL 916
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 765 S--SELEKLRENLTDMEAKFKEKDDredqlvKAKEKLENDIAEIMKMSGDNSSQLTKMNDELrlkersveelqlkLTKAN 842
Cdd:TIGR01612 917 KkvDEYIKICENTKESIEKFHNKQN------ILKEILNKNIDTIKESNLIEKSYKDKFDNTL-------------IDKIN 977
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 843 EnasfLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLElekkmETSYNQCQDlkakYEKASSETKTKHEEILQNLQK 922
Cdd:TIGR01612 978 E----LDKAFKDASLNDYEAKNNELIKYFNDLKANLGKNKE-----NMLYHQFDE----KEKATNDIEQKIEDANKNIPN 1044
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 923 M-LADTEDKLKAAQEANRDLMQDMEELKTQADKaKAAQTAEDAMQIMEQMtkektetlasledtkqtnaRLQNELDTLKE 1001
Cdd:TIGR01612 1045 IeIAIHTSIYNIIDEIEKEIGKNIELLNKEILE-EAEINITNFNEIKEKL-------------------KHYNFDDFGKE 1104
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1002 NNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSalqeenvklaeelgrtrdevTSHQKLEE--ERSVL 1079
Cdd:TIGR01612 1105 ENIKYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIK--------------------AQINDLEDvaDKAIS 1164
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1080 NNQLLEMKKRESEFRKDADEEKASLQksisltsalltekdaELEKLRNEVTvlrgenatakslhsvvqTLESDKVKLElK 1159
Cdd:TIGR01612 1165 NDDPEEIEKKIENIVTKIDKKKNIYD---------------EIKKLLNEIA-----------------EIEKDKTSLE-E 1211
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1160 VKNLELQLKENKRQLSSSsgntdaQAEEDERAQESQIDFLNSVIVDLQR-KNQDLKMKVEMMSEAALNGNGEDLNSYDSD 1238
Cdd:TIGR01612 1212 VKGINLSYGKNLGKLFLE------KIDEEKKKSEHMIKAMEAYIEDLDEiKEKSPEIENEMGIEMDIKAEMETFNISHDD 1285
|
890
....*....|....*...
gi 1907165194 1239 DQEKQ--SKKKPRLFCDI 1254
Cdd:TIGR01612 1286 DKDHHiiSKKHDENISDI 1303
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
689-1211 |
1.42e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.58 E-value: 1.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 689 KIIKEKEDSLEAVKARLdSAEDQHLVEMEDTLNKlqeaeiKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNvlssEL 768
Cdd:TIGR00618 187 AKKKSLHGKAELLTLRS-QLLTLCTPCMPDTYHE------RKQVLEKELKHLREALQQTQQSHAYLTQKREAQE----EQ 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 769 EKLRENLTDMEAKFKEKDDREDQLVKAKEKLEND-----IAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANE 843
Cdd:TIGR00618 256 LKKQQLLKQLRARIEELRAQEAVLEETQERINRArkaapLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVK 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 844 NASFLQKSigevtlkaEQSQQQAARKHEEekkeleekllelekkMETSYNQCQDLKAKYEKASSET---KTKHEEILQNL 920
Cdd:TIGR00618 336 QQSSIEEQ--------RRLLQTLHSQEIH---------------IRDAHEVATSIREISCQQHTLTqhiHTLQQQKTTLT 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 921 QKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLK 1000
Cdd:TIGR00618 393 QKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKERE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1001 ENnLKTVEEL-NKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVkLAEELGRTRDEVTSHQKLEEErsvL 1079
Cdd:TIGR00618 473 QQ-LQTKEQIhLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGP-LTRRMQRGEQTYAQLETSEED---V 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1080 NNQLLEMKKResefRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGE-NATAKSLHSVVQTLESDKVKLEL 1158
Cdd:TIGR00618 548 YHQLTSERKQ----RASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLtEKLSEAEDMLACEQHALLRKLQP 623
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 1907165194 1159 KVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQIDFLNSVIVDLQRKNQ 1211
Cdd:TIGR00618 624 EQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLA 676
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1010-1213 |
1.52e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.24 E-value: 1.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1010 LNKSKELLSVENQKMEEF-KKEIETLKQAAAQKSQQLSALQEEN--VKLAEELGRTRDEVTShqkLEEERSVLNNQLLEM 1086
Cdd:COG3206 162 LEQNLELRREEARKALEFlEEQLPELRKELEEAEAALEEFRQKNglVDLSEEAKLLLQQLSE---LESQLAEARAELAEA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1087 KKRESEFRKDADEEKASLqkSISLTSALLTEKDAELEKLRNEVTVLRgenATAKSLHSVVQTLESdkvklelKVKNLELQ 1166
Cdd:COG3206 239 EARLAALRAQLGSGPDAL--PELLQSPVIQQLRAQLAELEAELAELS---ARYTPNHPDVIALRA-------QIAALRAQ 306
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1907165194 1167 LKENKRQLSSSSGNTDAQAEEDERAQESQIDFLNSVIVDLQRKNQDL 1213
Cdd:COG3206 307 LQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAEL 353
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
567-1247 |
1.99e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 49.27 E-value: 1.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 567 AREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAE 646
Cdd:TIGR00606 231 AQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNH 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 647 LKT--QIERLRLDYQHEIESLqSKQDSERSAHAKEMETMQAKL-MKIIKEKEDSLEAVKARLDSAEDQHLVEME-DTLNK 722
Cdd:TIGR00606 311 QRTvrEKERELVDCQRELEKL-NKERRLLNQEKTELLVEQGRLqLQADRHQEHIRARDSLIQSLATRLELDGFErGPFSE 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 723 LQEAEIKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLtdmeakfkekDDREDQLVKAKEKLEND 802
Cdd:TIGR00606 390 RQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTI----------ELKKEILEKKQEELKFV 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 803 IAEIMKMSGdNSSQLTKMNDELRLKERsveelqlKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLL 882
Cdd:TIGR00606 460 IKELQQLEG-SSDRILELDQELRKAER-------ELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHT 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 883 ELEKKME-------TSYNQCQDLKAKYEK--------------------ASSETKTKHEEILQNLQKMLADTE------- 928
Cdd:TIGR00606 532 TTRTQMEmltkdkmDKDEQIRKIKSRHSDeltsllgyfpnkkqledwlhSKSKEINQTRDRLAKLNKELASLEqnknhin 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 929 --DKLKAAQEAN-----------RDLMQDMEELKTQADKAK---AAQTAEDAM--QIMEQMTKEKTETLASLEDTKQTNA 990
Cdd:TIGR00606 612 neLESKEEQLSSyedklfdvcgsQDEESDLERLKEEIEKSSkqrAMLAGATAVysQFITQLTDENQSCCPVCQRVFQTEA 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 991 RLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQ 1070
Cdd:TIGR00606 692 ELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQE 771
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1071 KLEE--------------ERSVLNNQLLEMKKRESEFRKDADEEKAS-LQKSISLTSALLTEKDAELEKLRNEVTVLRG- 1134
Cdd:TIGR00606 772 TLLGtimpeeesakvcltDVTIMERFQMELKDVERKIAQQAAKLQGSdLDRTVQQVNQEKQEKQHELDTVVSKIELNRKl 851
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1135 ---ENATAKSLHSVVQTLESDKVKLELKVKN---LELQLKENKRQLSSSSGNTDAQAEEDERAQESQIDFLNSVIVDLQR 1208
Cdd:TIGR00606 852 iqdQQEQIQHLKSKTNELKSEKLQIGTNLQRrqqFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISS 931
|
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 1907165194 1209 KNQDLK---MKVEMMSEAALN--GNGEDLNSYDSDDQEKQSKKK 1247
Cdd:TIGR00606 932 KETSNKkaqDKVNDIKEKVKNihGYMKDIENKIQDGKDDYLKQK 975
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
400-944 |
1.99e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 1.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 400 QHVLELEAKMDQLRTMVEAADrEKVELLNQLEEEKRKVEDLQfRVEE--ESITkgdlETQTKLEHARTKELEQSLLFEKT 477
Cdd:COG4913 215 EYMLEEPDTFEAADALVEHFD-DLERAHEALEDAREQIELLE-PIRElaERYA----AARERLAELEYLRAALRLWFAQR 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 478 KADKLQRELEDTRVATVSEKSRIMELEKDLALRAQEVAELRRRLESSkppgDVDMSLSLLQEISALQEKLEAI---HTDH 554
Cdd:COG4913 289 RLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGN----GGDRLEQLEREIERLERELEERerrRARL 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 555 QGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALwKSKLETAIASHQQ-------AME 627
Cdd:COG4913 365 EALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRE-LRELEAEIASLERrksnipaRLL 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 628 ELKVSFSKGIGTDSAE---FAEL----------KTQIERL-----------------------------RLDYQHEIESL 665
Cdd:COG4913 444 ALRDALAEALGLDEAElpfVGELievrpeeerwRGAIERVlggfaltllvppehyaaalrwvnrlhlrgRLVYERVRTGL 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 666 QSKQDSERSAHakemeTMQAKLmkIIKEKEdSLEAVKARLDSAEDQHLVEMEDTLnklqeaeiKKEKFASTSEEAVSAQT 745
Cdd:COG4913 524 PDPERPRLDPD-----SLAGKL--DFKPHP-FRAWLEAELGRRFDYVCVDSPEEL--------RRHPRAITRAGQVKGNG 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 746 RM----------------QDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDI------ 803
Cdd:COG4913 588 TRhekddrrrirsryvlgFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIdvasae 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 804 AEImkmsGDNSSQLTKM---NDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEK 880
Cdd:COG4913 668 REI----AELEAELERLdasSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLA 743
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907165194 881 LLELEkkmetsynqcQDLKAKYEKASSETKTKheEILQNLQKMLADTEDKLKAAQEANRDLMQD 944
Cdd:COG4913 744 RLELR----------ALLEERFAAALGDAVER--ELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
917-1134 |
2.17e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 2.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 917 LQNLQKMLADTEDKLKAAQEAnRDLMQDMEELKTQADKA---KAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQ 993
Cdd:COG4913 237 LERAHEALEDAREQIELLEPI-RELAERYAAARERLAELeylRAALRLWFAQRRLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 994 NELDTLKEnnlkTVEELnkSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEenvkLAEELGrtrdevtshQKLE 1073
Cdd:COG4913 316 ARLDALRE----ELDEL--EAQIRGNGGDRLEQLEREIERLERELEERERRRARLEA----LLAALG---------LPLP 376
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907165194 1074 EERSvlnnQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRG 1134
Cdd:COG4913 377 ASAE----EFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
400-1031 |
2.34e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 2.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 400 QHVLELEAKMDQLRTMVEAADR--EKVELLNQLEEEKRK--VEDLQFRVEEESITKGDLETQTKLEHARTKELEQSLLFE 475
Cdd:COG4913 242 EALEDAREQIELLEPIRELAERyaAARERLAELEYLRAAlrLWFAQRRLELLEAELEELRAELARLEAELERLEARLDAL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 476 KTKADKLQRELEDTRVATVSE-KSRIMELEKDLALRAQEVAELRRRLES--SKPPGDVDMSLSLLQEISALQEKLEAIHT 552
Cdd:COG4913 322 REELDELEAQIRGNGGDRLEQlEREIERLERELEERERRRARLEALLAAlgLPLPASAEEFAALRAEAAALLEALEEELE 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 553 DHQGEMTSLKehfgAREEAFQKEIKALhtateklSKENESLRSkldhaNKEN--SDVIALwKSKLETAIASHQQAM---- 626
Cdd:COG4913 402 ALEEALAEAE----AALRDLRRELREL-------EAEIASLER-----RKSNipARLLAL-RDALAEALGLDEAELpfvg 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 627 EELKVSFSKGIGTDSAE----------------FAELKTQIERL----RLDYQHEIESLQSKQDSERSAHakemeTMQAK 686
Cdd:COG4913 465 ELIEVRPEEERWRGAIErvlggfaltllvppehYAAALRWVNRLhlrgRLVYERVRTGLPDPERPRLDPD-----SLAGK 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 687 LmkIIKEKEDSlEAVKARLDSAEDQHLVEMEDTLnklqeaeiKKEKFASTSEEAVSAQTRM----------------QDT 750
Cdd:COG4913 540 L--DFKPHPFR-AWLEAELGRRFDYVCVDSPEEL--------RRHPRAITRAGQVKGNGTRhekddrrrirsryvlgFDN 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 751 VNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIaeimkmsgdnssqltkmndELRLKERS 830
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEI-------------------DVASAERE 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 831 VEELQLKLTKANENASFLQksigevTLKAEQSQQQAARK-HEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSET 909
Cdd:COG4913 670 IAELEAELERLDASSDDLA------ALEEQLEELEAELEeLEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLA 743
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 910 KtkhEEILQNLQKMLADTedklkAAQEANRDLMQDMEElKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTN 989
Cdd:COG4913 744 R---LELRALLEERFAAA-----LGDAVERELRENLEE-RIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESL 814
|
650 660 670 680
....*....|....*....|....*....|....*....|..
gi 1907165194 990 ARLQNELDTLKENNLKTVEElnKSKELLsveNQKMEEFKKEI 1031
Cdd:COG4913 815 PEYLALLDRLEEDGLPEYEE--RFKELL---NENSIEFVADL 851
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
347-603 |
2.51e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 2.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 347 SGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELAlardghdqhvlELEAKMDQLRTMVEAADREKVEL 426
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA-----------ALERRIAALARRIRALEQELAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 427 LNQLEEEKRKVEDLQFRVEEEsitKGDLETQTKLEHARTKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELEKD 506
Cdd:COG4942 82 EAELAELEKEIAELRAELEAQ---KEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRAD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 507 LalraQEVAELRRRLESSKppgdvDMSLSLLQEISALQEKLEAIHTDHQGEMTSLKehfgAREEAFQKEIKALHTATEKL 586
Cdd:COG4942 159 L----AELAALRAELEAER-----AELEALLAELEEERAALEALKAERQKLLARLE----KELAELAAELAELQQEAEEL 225
|
250
....*....|....*..
gi 1907165194 587 SKENESLRSKLDHANKE 603
Cdd:COG4942 226 EALIARLEAEAAAAAER 242
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
418-655 |
2.70e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 2.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 418 AADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARTKELEQSLLFEKTKADKLQRELEDTRVATVSEK 497
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 498 SRIMELEKDLA--LRAQEVAELRRRLE---SSKPPGDVDMSLSLLQEIS-ALQEKLEAIHTDHQgemtslkehfgaREEA 571
Cdd:COG4942 97 AELEAQKEELAelLRALYRLGRQPPLAlllSPEDFLDAVRRLQYLKYLApARREQAEELRADLA------------ELAA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 572 FQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIAlwksKLETAIASHQQAMEELKvsfskgigtdsAEFAELKTQI 651
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEALKAERQKLLA----RLEKELAELAAELAELQ-----------QEAEELEALI 229
|
....
gi 1907165194 652 ERLR 655
Cdd:COG4942 230 ARLE 233
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
1001-1247 |
2.80e-05 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 48.42 E-value: 2.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1001 ENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSA-LQEENVKLAEELGRTRD---EVTSHQKLEEER 1076
Cdd:COG5185 232 EEALKGFQDPESELEDLAQTSDKLEKLVEQNTDLRLEKLGENAESSKrLNENANNLIKQFENTKEkiaEYTKSIDIKKAT 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1077 SVLNNQLLEMKKrESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKS---LHSVVQTLESDK 1153
Cdd:COG5185 312 ESLEEQLAAAEA-EQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVELSKSseeLDSFKDTIESTK 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1154 VKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERaqesQIDFLNSVIVDLQRKNQDL-KMKVEMMSEAALNGNGEDL 1232
Cdd:COG5185 391 ESLDEIPQNQRGYAQEILATLEDTLKAADRQIEELQR----QIEQATSSNEEVSKLLNELiSELNKVMREADEESQSRLE 466
|
250
....*....|....*
gi 1907165194 1233 NSYDSDDQEKQSKKK 1247
Cdd:COG5185 467 EAYDEINRSVRSKKE 481
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
955-1191 |
2.99e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 2.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 955 AKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKEnnlktveELNKSKELLSVENQKMEEFKKEIETL 1034
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALER-------RIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1035 KQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSAL 1114
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907165194 1115 LTEKDAELEKLRNEVTVLRGENATAKSLH-SVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERA 1191
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERqKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
618-846 |
3.53e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 3.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 618 AIASHQQAMEELKvsfsKGIGTDSAEFAELKTQIERLrldyQHEIESLQsKQDSERSAHAKEMETMQAKLMKIIKEKEDS 697
Cdd:COG4942 21 AAAEAEAELEQLQ----QEIAELEKELAALKKEEKAL----LKQLAALE-RRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 698 LEAVKARLDSAEDQhLVEMEDTLNKLQEAEIKKEKFASTSEEAVSAQTRMQDTVNKlhQKEEQFNVLSSELEKLRENLTD 777
Cdd:COG4942 92 IAELRAELEAQKEE-LAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAP--ARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907165194 778 MEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENAS 846
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
703-1214 |
5.13e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 5.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 703 ARLDSAEDQhLVEMEDTLNKLQEAEIKKEKFASTSEEAvsAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKF 782
Cdd:COG4913 235 DDLERAHEA-LEDAREQIELLEPIRELAERYAAARERL--AELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAEL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 783 KEKDDREDQLVKAKEKLENDIAEImkmSGDNSSQLtkmndelrlkERSVEELQLKLTKANENASFLQKSIGEVTLKAEQS 862
Cdd:COG4913 312 ERLEARLDALREELDELEAQIRGN---GGDRLEQL----------EREIERLERELEERERRRARLEALLAALGLPLPAS 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 863 QQQAARKHEEEKKELEEKLLELEKKMETSYnqcqDLKAKYEKASSETKTKHEEIL----------QNLQKMLADTEDKLK 932
Cdd:COG4913 379 AEEFAALRAEAAALLEALEEELEALEEALA----EAEAALRDLRRELRELEAEIAslerrksnipARLLALRDALAEALG 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 933 AAQEANR---DLMQDMEE-----------LKTQA-------DKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAR 991
Cdd:COG4913 455 LDEAELPfvgELIEVRPEeerwrgaiervLGGFAltllvppEHYAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPD 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 992 -LQNELDTlKENNLKT--VEELNKSKELLSVENQkmEEFKKE-------------------------------------- 1030
Cdd:COG4913 535 sLAGKLDF-KPHPFRAwlEAELGRRFDYVCVDSP--EELRRHpraitragqvkgngtrhekddrrrirsryvlgfdnrak 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1031 IETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEersvLNNQLLEMKKRESEFRkDADEEKASLQKSisl 1110
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAE----YSWDEIDVASAEREIA-ELEAELERLDAS--- 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1111 tSALLTEKDAELEKLRNEVTVLRGEnatakslhsvVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAE---E 1187
Cdd:COG4913 684 -SDDLAALEEQLEELEAELEELEEE----------LDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRallE 752
|
570 580
....*....|....*....|....*..
gi 1907165194 1188 DERAQESQIDFLNSVIVDLQRKNQDLK 1214
Cdd:COG4913 753 ERFAAALGDAVERELRENLEERIDALR 779
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
990-1135 |
5.43e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.07 E-value: 5.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 990 ARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRD--EVT 1067
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkEYE 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907165194 1068 SHQK----LEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGE 1135
Cdd:COG1579 93 ALQKeiesLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAE 164
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
926-1128 |
5.59e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 5.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 926 DTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNlK 1005
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASS-D 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1006 TVEELnkskellsvenqkmeefKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLN----N 1081
Cdd:COG4913 686 DLAAL-----------------EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLArlelR 748
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1907165194 1082 QLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNE 1128
Cdd:COG4913 749 ALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| COG4487 |
COG4487 |
Uncharacterized conserved protein, contains DUF2130 domain [Function unknown]; |
896-1045 |
5.79e-05 |
|
Uncharacterized conserved protein, contains DUF2130 domain [Function unknown];
Pssm-ID: 443580 [Multi-domain] Cd Length: 425 Bit Score: 47.25 E-value: 5.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 896 QDLKAKYEKASSETKTKHEEILQNLQKMLADTEDK--LKAAQEANRDLMQDMEELKTQADKAKAAQTAEdamqiMEQMTK 973
Cdd:COG4487 50 ELAEAKAKAQLQEQVAEKDAEIAELRARLEAEERKkaLAVAEEKEKELAALQEALAEKDAKLAELQAKE-----LELLKK 124
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907165194 974 EKTETLASLEDTKQTNARLQNELDTLKEN-NLKTVEELNKSKELLSVENQK-MEEFKKEIETLKQAAAQKSQQL 1045
Cdd:COG4487 125 ERELEDAKREAELTVEKERDEELDELKEKlKKEEEEKQLAEKSLKVAEYEKqLKDMQEQIEELKRKKEQGSTQL 198
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
569-803 |
6.15e-05 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 47.33 E-value: 6.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 569 EEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKGIGTDS------- 641
Cdd:pfam05667 253 AEQLRSAALAGTEATSGASRSAQDLAELLSSFSGSSTTDTGLTKGSRFTHTEKLQFTNEAPAATSSPPTKVETeeelqqq 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 642 --AEFAELKTQIERLRLD---YQHEIESLQSK----------QDSERSAHAKEMEtMQAKLMKIIKEKEDSLEAVKARLD 706
Cdd:pfam05667 333 reEELEELQEQLEDLESSiqeLEKEIKKLESSikqveeeleeLKEQNEELEKQYK-VKKKTLDLLPDAEENIAKLQALVD 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 707 SAEdQHLVEMEDTLNKLQEAEIKKEKfastsEEAVSAQTRMQDTVNKLhqkeeqfnvlsSELEKLRENLTDMEAKFKEKD 786
Cdd:pfam05667 412 ASA-QRLVELAGQWEKHRVPLIEEYR-----ALKEAKSNKEDESQRKL-----------EEIKELREKIKEVAEEAKQKE 474
|
250
....*....|....*..
gi 1907165194 787 DREDQLVKAKEKLENDI 803
Cdd:pfam05667 475 ELYKQLVAEYERLPKDV 491
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
644-1101 |
6.34e-05 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 47.90 E-value: 6.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 644 FAELKTQIERLRLDYQHEIESLQSKQDsERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSaedqhLVEMEDTLNKL 723
Cdd:PTZ00440 423 LKENSQKIADYALYSNLEIIEIKKKYD-EKINELKKSINQLKTLISIMKSFYDLIISEKDSMDS-----KEKKESSDSNY 496
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 724 QEaeiKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREdqlvKAKEKLENDI 803
Cdd:PTZ00440 497 QE---KVDELLQIINSIKEKNNIVNNNFKNIEDYYITIEGLKNEIEGLIELIKYYLQSIETLIKDE----KLKRSMKNDI 569
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 804 AEIMKMSGDNSSQLTKM---NDELRLKERSVEELqlkltkANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEK 880
Cdd:PTZ00440 570 KNKIKYIEENVDHIKDIislNDEIDNIIQQIEEL------INEALFNKEKFINEKNDLQEKVKYILNKFYKGDLQELLDE 643
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 881 LLELEKKMETSYNQcQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAqeanrdlMQDMEELKTQADKAKAAQT 960
Cdd:PTZ00440 644 LSHFLDDHKYLYHE-AKSKEDLQTLLNTSKNEYEKLEFMKSDNIDNIIKNLKKE-------LQNLLSLKENIIKKQLNNI 715
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 961 AEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQ 1040
Cdd:PTZ00440 716 EQDISNSLNQYTIKYNDLKSSIEEYKEEEEKLEVYKHQIINRKNEFILHLYENDKDLPDGKNTYEEFLQYKDTILNKENK 795
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907165194 1041 KSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEK 1101
Cdd:PTZ00440 796 ISNDINILKENKKNNQDLLNSYNILIQKLEAHTEKNDEELKQLLQKFPTEDENLNLKELEK 856
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
410-1026 |
7.12e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 47.35 E-value: 7.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 410 DQLRTMVEAADREKVE-------LLNQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARTKELEQSLLFEKTKAdkl 482
Cdd:TIGR00606 419 SKERLKQEQADEIRDEkkglgrtIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSL--- 495
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 483 qreLEDTRVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKppgdvdMSLSLLQEISALQEKLEAIHTDHQGEMTSLK 562
Cdd:TIGR00606 496 ---TETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRT------QMEMLTKDKMDKDEQIRKIKSRHSDELTSLL 566
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 563 EHFGAREE------AFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIA---------------------LWKSKL 615
Cdd:TIGR00606 567 GYFPNKKQledwlhSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEqlssyedklfdvcgsqdeesdLERLKE 646
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 616 ETAIASHQQAMEELKVSFSKGIGTDS------------------AEFAELKTQIE---RLRLDYQHEIESLQSKQDSERS 674
Cdd:TIGR00606 647 EIEKSSKQRAMLAGATAVYSQFITQLtdenqsccpvcqrvfqteAELQEFISDLQsklRLAPDKLKSTESELKKKEKRRD 726
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 675 A--------------HAKEMETMQAKLMKI----------IKEKEDSLEAVKARLDSAED--QHLVEMEDTLNKLQEAEI 728
Cdd:TIGR00606 727 EmlglapgrqsiidlKEKEIPELRNKLQKVnrdiqrlkndIEEQETLLGTIMPEEESAKVclTDVTIMERFQMELKDVER 806
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 729 KKEKFASTSEeAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRenltdmeakfKEKDDREDQLVKAKEKLENDIAEIMK 808
Cdd:TIGR00606 807 KIAQQAAKLQ-GSDLDRTVQQVNQEKQEKQHELDTVVSKIELNR----------KLIQDQQEQIQHLKSKTNELKSEKLQ 875
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 809 MsGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGevtlKAEQSQQQAARKHEEEKKELEEKLLELEKKM 888
Cdd:TIGR00606 876 I-GTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLE----KDQQEKEELISSKETSNKKAQDKVNDIKEKV 950
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 889 ETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTaedaMQIM 968
Cdd:TIGR00606 951 KNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLT----LRKR 1026
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907165194 969 EQMTKEKTETLAS---------LEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEE 1026
Cdd:TIGR00606 1027 ENELKEVEEELKQhlkemgqmqVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE 1093
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
737-1125 |
7.89e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 47.26 E-value: 7.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 737 SEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDR-------------EDQLVKAKEKLENDI 803
Cdd:PRK04863 285 LEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHlnlvqtalrqqekIERYQADLEELEERL 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 804 AEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKsigevtlKAEQSQQ--QAARKHEEEKKELEEKL 881
Cdd:PRK04863 365 EEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQT-------RAIQYQQavQALERAKQLCGLPDLTA 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 882 LELEKKMETSYNQCQDLKAKYEKA------SSETKTKHEEILQNLQKMLADTEDklKAAQEANRDLMQDMEELKTQADKA 955
Cdd:PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLeqklsvAQAAHSQFEQAYQLVRKIAGEVSR--SEAWDVARELLRRLREQRHLAEQL 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 956 KAAQTA-----------EDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKennlktvEELNKSKELLSVENQKM 1024
Cdd:PRK04863 516 QQLRMRlseleqrlrqqQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLS-------ESVSEARERRMALRQQL 588
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1025 EEFKKEIETLkqaaAQKSQQLSALQEENVKLAEELGrtrDEVTSHQKLEEERSvlnnQLLEMKKRESEFRKDADEEKASL 1104
Cdd:PRK04863 589 EQLQARIQRL----AARAPAWLAAQDALARLREQSG---EEFEDSQDVTEYMQ----QLLERERELTVERDELAARKQAL 657
|
410 420
....*....|....*....|.
gi 1907165194 1105 QKSISLTSALLTEKDAELEKL 1125
Cdd:PRK04863 658 DEEIERLSQPGGSEDPRLNAL 678
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
737-1049 |
8.88e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 47.21 E-value: 8.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 737 SEEAVSAQTrmqDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQ 816
Cdd:PRK11281 37 TEADVQAQL---DALNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEE 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 817 LTKmndelRLKERSVEELQLKLTKANENASFLQKSIGEVT--LKAEQSQQQAARKheeekkeleekllelekKMETSYNQ 894
Cdd:PRK11281 114 TRE-----TLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNsqLVSLQTQPERAQA-----------------ALYANSQR 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 895 CQDLKA--KYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMeeLKTQADKAKAAQTAEDAMQIMEQ-- 970
Cdd:PRK11281 172 LQQIRNllKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDL--LQKQRDYLTARIQRLEHQLQLLQea 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 971 -------MTKEKTETLASLEDT--KQTNARLQNELDT---LKENNLKTVEELNKskelLSVENQKMeefKKEIETLKQAA 1038
Cdd:PRK11281 250 inskrltLSEKTVQEAQSQDEAarIQANPLVAQELEInlqLSQRLLKATEKLNT----LTQQNLRV---KNWLDRLTQSE 322
|
330
....*....|.
gi 1907165194 1039 AQKSQQLSALQ 1049
Cdd:PRK11281 323 RNIKEQISVLK 333
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
358-829 |
9.13e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 47.25 E-value: 9.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 358 EKQQHIEQLL-AERDL--ERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEA-ADREKVEllnQLEEE 433
Cdd:COG3096 279 ERRELSERALeLRRELfgARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDHLNLVQTAlRQQEKIE---RYQED 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 434 krkVEDLQFRVEEESITKGDLETQTKLEHARTKELEQSLLFEKTKADKLQRELE--DTR-------VATVSEKSRIMELE 504
Cdd:COG3096 356 ---LEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDvqQTRaiqyqqaVQALEKARALCGLP 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 505 kDLALR--AQEVAELRRRLESskppgdvdmslsLLQEISALQEKL---EAIHTDHQGEMTSLKEHFGA--REEAFQKEIK 577
Cdd:COG3096 433 -DLTPEnaEDYLAAFRAKEQQ------------ATEEVLELEQKLsvaDAARRQFEKAYELVCKIAGEveRSQAWQTARE 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 578 ALHTATEK--LSKENESLRSKLDHANKEnsdvialwkskletaiASHQQAMEELKVSFSKGIGTDsaefaelktqierlr 655
Cdd:COG3096 500 LLRRYRSQqaLAQRLQQLRAQLAELEQR----------------LRQQQNAERLLEEFCQRIGQQ--------------- 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 656 LDYQHEIESLQSKQDSERSAHAKEMETMQAKLMkiikEKEDSLEAVKARLDSAEDQ--HLVEMEDTLNKLQEAeiKKEKF 733
Cdd:COG3096 549 LDAAEELEELLAELEAQLEELEEQAAEAVEQRS----ELRQQLEQLRARIKELAARapAWLAAQDALERLREQ--SGEAL 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 734 ASTSEeaVSAQtrMQDTVNKLHQKEEQfnvlsseleklrenltdmeakfkekddrEDQLVKAKEKLENDIAEIMKMSGDN 813
Cdd:COG3096 623 ADSQE--VTAA--MQQLLEREREATVE----------------------------RDELAARKQALESQIERLSQPGGAE 670
|
490
....*....|....*.
gi 1907165194 814 SSQLtkmndeLRLKER 829
Cdd:COG3096 671 DPRL------LALAER 680
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
892-1068 |
9.23e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.36 E-value: 9.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 892 YNQCQDLKAKYEKASSETKTKHEEIlQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADK------AKAAQTAEDAM 965
Cdd:COG3883 43 QAELEELNEEYNELQAELEALQAEI-DKLQAEIAEAEAEIEERREELGERARALYRSGGSVSYldvllgSESFSDFLDRL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 966 QIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLsveNQKMEEFKKEIETLKQAAAQKSQQL 1045
Cdd:COG3883 122 SALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAEL---EAQQAEQEALLAQLSAEEAAAEAQL 198
|
170 180
....*....|....*....|...
gi 1907165194 1046 SALQEENVKLAEELGRTRDEVTS 1068
Cdd:COG3883 199 AELEAELAAAEAAAAAAAAAAAA 221
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
351-544 |
1.05e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 351 ALQEALKEKQQHIEqllAERDLERAEVAKATSHVGEIEQELALAR---DGHDQHVLELEAKMDQLRTMVEAADREKVELL 427
Cdd:COG4913 253 LLEPIRELAERYAA---ARERLAELEYLRAALRLWFAQRRLELLEaelEELRAELARLEAELERLEARLDALREELDELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 428 NQLEEEK-RKVEDLQFRVEEESITKGDLETQTKLEHARTKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRimeLEKD 506
Cdd:COG4913 330 AQIRGNGgDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEA---LEEA 406
|
170 180 190
....*....|....*....|....*....|....*...
gi 1907165194 507 LALRAQEVAELRRRLEsskppgdvdmslSLLQEISALQ 544
Cdd:COG4913 407 LAEAEAALRDLRRELR------------ELEAEIASLE 432
|
|
| CLIP1_ZNF |
pfam16641 |
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of ... |
1249-1266 |
1.14e-04 |
|
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of the cytoplasmic linker protein CLIP1 (CLIP170). It forms a complex with the CAP-Gly domain of Dynactin.
Pssm-ID: 465212 Cd Length: 17 Bit Score: 40.14 E-value: 1.14e-04
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
410-588 |
1.37e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.16 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 410 DQLRTMVEAADREKVELLNQLEEEKRKVEDLQ-----FRVEEESItkgDLETQTKLEHARTKELEQSLL-------FEKT 477
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEaaleeFRQKNGLV---DLSEEAKLLLQQLSELESQLAearaelaEAEA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 478 KADKLQRELEDTR--VATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPpgDVdmsLSLLQEISALQEKLEAIHTDHQ 555
Cdd:COG3206 241 RLAALRAQLGSGPdaLPELLQSPVIQQLRAQLAELEAELAELSARYTPNHP--DV---IALRAQIAALRAQLQQEAQRIL 315
|
170 180 190
....*....|....*....|....*....|...
gi 1907165194 556 GEMTSLKEHFGAREEAFQKEIKALHTATEKLSK 588
Cdd:COG3206 316 ASLEAELEALQAREASLQAQLAQLEARLAELPE 348
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
725-838 |
1.41e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 46.39 E-value: 1.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 725 EAEIKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDR----EDQLVKAKEKLE 800
Cdd:COG2433 379 EEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERierlERELSEARSEER 458
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1907165194 801 NDI---AEIMKMSGDNsSQLTKmndELRLKERSVEELQLKL 838
Cdd:COG2433 459 REIrkdREISRLDREI-ERLER---ELEEERERIEELKRKL 495
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
332-661 |
1.50e-04 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 45.83 E-value: 1.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 332 TGLLTETSSRYARKISGTTALQEALKEKQQHIEQLlaerdleRAEVAKATSHVGEIEQELALARD-----GHDQHVLELE 406
Cdd:pfam19220 75 TRRLSAAEGELEELVARLAKLEAALREAEAAKEEL-------RIELRDKTAQAEALERQLAAETEqnralEEENKALREE 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 407 AK-MDQLRTMVEAADREKVELLNQLEEEKRKvedLQFRVEEESI-------TKGDLETQTKLEHARTKELEQSLLFEKTK 478
Cdd:pfam19220 148 AQaAEKALQRAEGELATARERLALLEQENRR---LQALSEEQAAelaeltrRLAELETQLDATRARLRALEGQLAAEQAE 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 479 ADKLQRELEDTRVATVSEKS----RIMELEKDLALRAQEVAELRRRLesskppgdvdmslsllQEISALQEKLEAIHTDH 554
Cdd:pfam19220 225 RERAEAQLEEAVEAHRAERAslrmKLEALTARAAATEQLLAEARNQL----------------RDRDEAIRAAERRLKEA 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 555 QGEMTSLKehfgAREEAFQKEIKALHTATeklsKENESLRSKLDHANKENSDVIALWKSKLETA---IASHQQAMEELKV 631
Cdd:pfam19220 289 SIERDTLE----RRLAGLEADLERRTQQF----QEMQRARAELEERAEMLTKALAAKDAALERAeerIASLSDRIAELTK 360
|
330 340 350
....*....|....*....|....*....|
gi 1907165194 632 SFSKgigtdsaEFAELKTQIERLRLDYQHE 661
Cdd:pfam19220 361 RFEV-------ERAALEQANRRLKEELQRE 383
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
425-1200 |
1.66e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 46.32 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 425 ELLNQLEEEKRKVEDLQFRVEEESitkgdleTQTKLEHARTKElEQSLLFEKTKAD-KLQRELEDTRVATVSEKSRIMEL 503
Cdd:pfam01576 5 EEMQAKEEELQKVKERQQKAESEL-------KELEKKHQQLCE-EKNALQEQLQAEtELCAEAEEMRARLAARKQELEEI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 504 EKDLALRAQEVAELRRRLESSKPpgdvdmslSLLQEISALQEKLEAIHTDHQgEMTSLKEHFGAREEAFQKEIKALHTAT 583
Cdd:pfam01576 77 LHELESRLEEEEERSQQLQNEKK--------KMQQHIQDLEEQLDEEEAARQ-KLQLEKVTTEAKIKKLEEDILLLEDQN 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 584 EKLSKENESLRSKLDHAN------KENSDVIALWKSKLETAIASHQ----------QAMEELKVSFSKGIGTDSAEFAEL 647
Cdd:pfam01576 148 SKLSKERKLLEERISEFTsnlaeeEEKAKSLSKLKNKHEAMISDLEerlkkeekgrQELEKAKRKLEGESTDLQEQIAEL 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 648 KTQIERLRLDYQHEIESLQSKQD--SERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHL----------VE 715
Cdd:pfam01576 228 QAQIAELRAQLAKKEEELQAALArlEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRdlgeelealkTE 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 716 MEDTL---NKLQEAEIKKEKFASTSEEAVSAQTRMQDT-VNKLHQKEEQ-FNVLSSELEKLRENLTDMEAKFKEKDDRED 790
Cdd:pfam01576 308 LEDTLdttAAQQELRSKREQEVTELKKALEEETRSHEAqLQEMRQKHTQaLEELTEQLEQAKRNKANLEKAKQALESENA 387
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 791 QLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAAR-- 868
Cdd:pfam01576 388 ELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSle 467
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 869 KHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEK---ASSETKTKHEEILQNLQKMLADTEDKLKAAQEAnrdlMQDM 945
Cdd:pfam01576 468 SQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEqleEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGT----LEAL 543
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 946 EElktqaDKAKAAQTAEDAMQIMEqmtkEKTETLASLEDTKQtnaRLQNELDTLkennlktVEELNKSKELLSVENQKME 1025
Cdd:pfam01576 544 EE-----GKKRLQRELEALTQQLE----EKAAAYDKLEKTKN---RLQQELDDL-------LVDLDHQRQLVSNLEKKQK 604
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1026 EFKK---EIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQK-LEEERSVLNNQLLEMKKRESEFRKDADE-- 1099
Cdd:pfam01576 605 KFDQmlaEEKAISARYAEERDRAEAEAREKETRALSLARALEEALEAKEeLERTNKQLRAEMEDLVSSKDDVGKNVHEle 684
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1100 -EKASLQKSISLTSALLTEKDAELE-----KLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQ 1173
Cdd:pfam01576 685 rSKRALEQQVEEMKTQLEELEDELQatedaKLRLEVNMQALKAQFERDLQARDEQGEEKRRQLVKQVRELEAELEDERKQ 764
|
810 820
....*....|....*....|....*..
gi 1907165194 1174 LSSSSGnTDAQAEEDERAQESQIDFLN 1200
Cdd:pfam01576 765 RAQAVA-AKKKLELDLKELEAQIDAAN 790
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
658-1191 |
1.91e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 46.20 E-value: 1.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 658 YQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKkekfaSTS 737
Cdd:TIGR01612 472 FEEEWGSYDIKKDIDENSKQDNTVKLILMRMKDFKDIIDFMELYKPDEVPSKNIIGFDIDQNIKAKLYKEIE-----AGL 546
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 738 EEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTD------------------MEAKFKEKDDREDQLVKA---K 796
Cdd:TIGR01612 547 KESYELAKNWKKLIHEIKKELEEENEDSIHLEKEIKDLFDkyleiddeiiyinklkleLKEKIKNISDKNEYIKKAidlK 626
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 797 EKLENDIAEIMKMSGDNSSQLTkmnDELRLKERSVEELQLKLTKA---------NENASFLQKSI---GEVTLKAEQSQQ 864
Cdd:TIGR01612 627 KIIENNNAYIDELAKISPYQVP---EHLKNKDKIYSTIKSELSKIyeddidalyNELSSIVKENAidnTEDKAKLDDLKS 703
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 865 QAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASsetktkHEEILQNLQKMLADTEDKLKAAQEANRDLMQD 944
Cdd:TIGR01612 704 KIDKEYDKIQNMETATVELHLSNIENKKNELLDIIVEIKKHI------HGEINKDLNKILEDFKNKEKELSNKINDYAKE 777
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 945 MEELKTQADKAKAAQTA------------EDAMQIMEQmTKEKTETLASLEDtkqTNARLQNELDTLKEnnlktvEELNK 1012
Cdd:TIGR01612 778 KDELNKYKSKISEIKNHyndqinidnikdEDAKQNYDK-SKEYIKTISIKED---EIFKIINEMKFMKD------DFLNK 847
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1013 SKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQ----EENVKLAEELgrtRDEVTshQKLEEERSVLNNQllemkK 1088
Cdd:TIGR01612 848 VDKFINFENNCKEKIDSEHEQFAELTNKIKAEISDDKlndyEKKFNDSKSL---INEIN--KSIEEEYQNINTL-----K 917
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1089 RESEFRKDADEEKASLQKsisltsalLTEKDAEL-EKLRNEVTVLRGENATAKSLHSVVQ-TLESDKVKLELKVKNLELQ 1166
Cdd:TIGR01612 918 KVDEYIKICENTKESIEK--------FHNKQNILkEILNKNIDTIKESNLIEKSYKDKFDnTLIDKINELDKAFKDASLN 989
|
570 580 590
....*....|....*....|....*....|....*...
gi 1907165194 1167 LKEN------------KRQLSSSSGNT-DAQAEEDERA 1191
Cdd:TIGR01612 990 DYEAknnelikyfndlKANLGKNKENMlYHQFDEKEKA 1027
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
641-1159 |
2.91e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 45.12 E-value: 2.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 641 SAEFAELKTQIERLRLDY-QHEIESLQSKQDSERSAHA------KEMETMQAKLMKIIKEKEDSLEAVKARLDSAE-DQH 712
Cdd:pfam05557 1 RAELIESKARLSQLQNEKkQMELEHKRARIELEKKASAlkrqldRESDRNQELQKRIRLLEKREAEAEEALREQAElNRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 713 LVEMEDTLNKLQEAeiKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQL 792
Cdd:pfam05557 81 KKKYLEALNKKLNE--KESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 793 VKAKEKLENDIAEIMKMSGDNSSQ------LTKMNDELRlkerSVEELQLKLTKANENASFLQKSIGEVTL--------- 857
Cdd:pfam05557 159 EKQQSSLAEAEQRIKELEFEIQSQeqdseiVKNSKSELA----RIPELEKELERLREHNKHLNENIENKLLlkeevedlk 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 858 ----KAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYN--------------QCQDLKAKYEKASSETKTKHEEILQ- 918
Cdd:pfam05557 235 rkleREEKYREEAATLELEKEKLEQELQSWVKLAQDTGLNlrspedlsrrieqlQQREIVLKEENSSLTSSARQLEKARr 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 919 -------NLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTkqtnar 991
Cdd:pfam05557 315 eleqelaQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILESYDKELTMSNYSPQLLERIEEAEDM------ 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 992 lqneLDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEElgrtrdevtsHQK 1071
Cdd:pfam05557 389 ----TQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADPSYSKEEVDSLRRKLE----------TLE 454
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1072 LEEERSVLNNQLLEMKKRESEFRKDADEEKAS-LQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLE 1150
Cdd:pfam05557 455 LERQRLREQKNELEMELERRCLQGDYDPKKTKvLHLSMNPAAEAYQQRKNQLEKLQAEIERLKRLLKKLEDDLEQVLRLP 534
|
....*....
gi 1907165194 1151 SDKVKLELK 1159
Cdd:pfam05557 535 ETTSTMNFK 543
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
482-731 |
3.52e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.01 E-value: 3.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 482 LQRELEDTRVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPPGDVDMslsLLQEISALQEKLEAIhtdhQGEMTSL 561
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKL---LLQQLSELESQLAEA----RAELAEA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 562 KehfgAREEAFQKEIKALHTATEKLSkeneslrskldhankeNSDVIAlwksKLETAIASHQQAMEELKVSFskgiGTDS 641
Cdd:COG3206 239 E----ARLAALRAQLGSGPDALPELL----------------QSPVIQ----QLRAQLAELEAELAELSARY----TPNH 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 642 AEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKL------MKIIKEKEDSLEAVKARLDSAEDQHlve 715
Cdd:COG3206 291 PDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLaqlearLAELPELEAELRRLEREVEVARELY--- 367
|
250
....*....|....*.
gi 1907165194 716 mEDTLNKLQEAEIKKE 731
Cdd:COG3206 368 -ESLLQRLEEARLAEA 382
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
353-869 |
3.59e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 3.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 353 QEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHVLEleaKMDQLRTMVEAADREKVELLNQLEE 432
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGD---RLEQLEREIERLERELEERERRRAR 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 433 EKRKVEDLQFRVEEesiTKGDLETQtkleHARTKELEQSLLFEKTKADKLQRELEDtrvatvseksRIMELEKDLALRAQ 512
Cdd:COG4913 364 LEALLAALGLPLPA---SAEEFAAL----RAEAAALLEALEEELEALEEALAEAEA----------ALRDLRRELRELEA 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 513 EVAELRRRlESSKPPGDVDMSLSLLQEISALQEKLEAIhtdhqGEMTSLKEhfgaREEAFQKEI-KALHT---------- 581
Cdd:COG4913 427 EIASLERR-KSNIPARLLALRDALAEALGLDEAELPFV-----GELIEVRP----EEERWRGAIeRVLGGfaltllvppe 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 582 ----ATEKLskENESLRSKLDhankenSDVIALWKSKLETAIASHQQAMEELKVSfskgigtDSAEFAELKTQIERlRLD 657
Cdd:COG4913 497 hyaaALRWV--NRLHLRGRLV------YERVRTGLPDPERPRLDPDSLAGKLDFK-------PHPFRAWLEAELGR-RFD 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 658 YQ--HEIESL-----------QSKQDSERSAHAKEMETMQ------------AKLMKIIKEKEDSLEAVKARLDSAEDQH 712
Cdd:COG4913 561 YVcvDSPEELrrhpraitragQVKGNGTRHEKDDRRRIRSryvlgfdnraklAALEAELAELEEELAEAEERLEALEAEL 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 713 lvemeDTLNKLQEAEIKKEKFASTSEEAVSAQTRMQDtvnkLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQL 792
Cdd:COG4913 641 -----DALQERREALQRLAEYSWDEIDVASAEREIAE----LEAELERLDASSDDLAALEEQLEELEAELEELEEELDEL 711
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907165194 793 VKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARK 869
Cdd:COG4913 712 KGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEE 788
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
355-526 |
3.63e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.85 E-value: 3.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 355 ALKEKQQHIEQLLAE---RDLERAEVAKATS-----------HVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAAD 420
Cdd:COG2433 347 AYKNKFERVEKKVPPdvdRDEVKARVIRGLSieealeeliekELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLE 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 421 REKVELLNQLEEEKRKVEDLQFRVEEESItkgdletQTKLEHARTKELEQsllfEKTKADKLQRELEDtrvatvsEKSRI 500
Cdd:COG2433 427 AEVEELEAELEEKDERIERLERELSEARS-------EERREIRKDREISR----LDREIERLERELEE-------ERERI 488
|
170 180
....*....|....*....|....*..
gi 1907165194 501 MELEKDLA-LRAQEVAELRRRLESSKP 526
Cdd:COG2433 489 EELKRKLErLKELWKLEHSGELVPVKV 515
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
660-1250 |
3.80e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.21 E-value: 3.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 660 HEIESLQSKQDSERSAHAKeMETMQAKLMKIIKEKEDSLEAVKARLdSAEDQHLVEMEDTLNKLQeAEIKKEKFASTSE- 738
Cdd:pfam12128 241 PEFTKLQQEFNTLESAELR-LSHLHFGYKSDETLIASRQEERQETS-AELNQLLRTLDDQWKEKR-DELNGELSAADAAv 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 739 -------EAVSAQTR--MQDTVNKLHQKEEQFNVLSSELEKLRENLT-------DMEAKF-----KEKDDREDQLVKAKE 797
Cdd:pfam12128 318 akdrselEALEDQHGafLDADIETAAADQEQLPSWQSELENLEERLKaltgkhqDVTAKYnrrrsKIKEQNNRDIAGIKD 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 798 KLENDIAEIMKMSGDNSSQLTKMNDELRlkersvEELQLKLTKANENASFLQKSIGEvtLKAEQSQQQAarkheeekkel 877
Cdd:pfam12128 398 KLAKIREARDRQLAVAEDDLQALESELR------EQLEAGKLEFNEEEYRLKSRLGE--LKLRLNQATA----------- 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 878 eekLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQnLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAka 957
Cdd:pfam12128 459 ---TPELLLQLENFDERIERAREEQEAANAEVERLQSELRQ-ARKRRDQASEALRQASRRLEERQSALDELELQLFPQ-- 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 958 AQTAEDAMQIMEQMTKEKTETLASLEDTKQTNarLQNELDTLKENNLKTVEELNkskelLSVENQKMEEFKKEIETLKQA 1037
Cdd:pfam12128 533 AGTLLHFLRKEAPDWEQSIGKVISPELLHRTD--LDPEVWDGSVGGELNLYGVK-----LDLKRIDVPEWAASEEELRER 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1038 AAQKSQQLSALQEENVKLAEELGRTRDEVTSHQK-LEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLT 1116
Cdd:pfam12128 606 LDKAEEALQSAREKQAAAEEQLVQANGELEKASReETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLN 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1117 EKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKnlELQLKENKRQLSSSSGNTDAQAEEDERAQESQI 1196
Cdd:pfam12128 686 SLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQ--LALLKAAIAARRSGAKAELKALETWYKRDLASL 763
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 1907165194 1197 DFLNSVIVDLQRKNQDLKMKVEMMSeaalnGNGEDLNSYDSDDQEKQSKKKPRL 1250
Cdd:pfam12128 764 GVDPDVIAKLKREIRTLERKIERIA-----VRRQEVLRYFDWYQETWLQRRPRL 812
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
928-1100 |
5.79e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.00 E-value: 5.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 928 EDKLKAAQEANRDLMQD----MEELKtqadKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENN 1003
Cdd:PRK12704 30 EAKIKEAEEEAKRILEEakkeAEAIK----KEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1004 LKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKlAEELGRTRDEvtshqkLEEERSVLnnql 1083
Cdd:PRK12704 106 EKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAK-EILLEKVEEE------ARHEAAVL---- 174
|
170
....*....|....*..
gi 1907165194 1084 leMKKRESEFRKDADEE 1100
Cdd:PRK12704 175 --IKEIEEEAKEEADKK 189
|
|
| CCCAP |
pfam15964 |
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in ... |
910-1163 |
6.37e-04 |
|
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in eukaryotes. CCCAP is also known as SDCCAG8, serologically defined colon cancer antigen 8. It is associated with the centrosome.
Pssm-ID: 435040 [Multi-domain] Cd Length: 703 Bit Score: 44.13 E-value: 6.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 910 KTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQiMEQMTKEKTETLASLEDTKQTN 989
Cdd:pfam15964 362 KSELERQKERLEKELASQQEKRAQEKEALRKEMKKEREELGATMLALSQNVAQLEAQ-VEKVTREKNSLVSQLEEAQKQL 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 990 ARLQNELDT--------LKENNLKTVEELNKSKEL-------LSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVK 1054
Cdd:pfam15964 441 ASQEMDVTKvcgemryqLNQTKMKKDEAEKEHREYrtktgrqLEIKDQEIEKLGLELSESKQRLEQAQQDAARAREECLK 520
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1055 LAEELGRTRDEV--TSHQKLEEERSVLNN---QLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEV 1129
Cdd:pfam15964 521 LTELLGESEHQLhlTRLEKESIQQSFSNEakaQALQAQQREQELTQKMQQMEAQHDKTVNEQYSLLTSQNTFIAKLKEEC 600
|
250 260 270
....*....|....*....|....*....|....
gi 1907165194 1130 TVLrgenatAKSLHSVVQTLESDKVKLELKVKNL 1163
Cdd:pfam15964 601 CTL------AKKLEEITQKSRSEVEQLSQEKEYL 628
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
896-1247 |
7.54e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 44.04 E-value: 7.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 896 QDLKAKYEKASSETKTKheeilqNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAkaaqtaedamqimeqmTKEK 975
Cdd:pfam10174 213 EELHRRNQLQPDPAKTK------ALQTVIEMKDTKISSLERNIRDLEDEVQMLKTNGLLH----------------TEDR 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 976 TETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKL 1055
Cdd:pfam10174 271 EEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDAL 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1056 A---EELGRTRDEVTSH-QKLEEERSVLNNQLLEMKKresefRKDADEEKAS-LQKSISLTSALLTEKDAELEKLRNEvt 1130
Cdd:pfam10174 351 RlrlEEKESFLNKKTKQlQDLTEEKSTLAGEIRDLKD-----MLDVKERKINvLQKKIENLQEQLRDKDKQLAGLKER-- 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1131 vlrgenatakslhsvVQTLESDKVKLELKVKNLELQLKENKRQLSsssgNTDAQAEEDERAQESQIDflnsvivDLQRKN 1210
Cdd:pfam10174 424 ---------------VKSLQTDSSNTDTALTTLEEALSEKERIIE----RLKEQREREDRERLEELE-------SLKKEN 477
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 1907165194 1211 QDLKMKVEMM------SEAALNGNGEDLNSYDSDDQEKQSKKK 1247
Cdd:pfam10174 478 KDLKEKVSALqpelteKESSLIDLKEHASSLASSGLKKDSKLK 520
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
402-1002 |
7.67e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.06 E-value: 7.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 402 VLELEAKMDQLRTMVEA--ADREKVELLNQLEEEK--RKVEDLQFRVEEESITKGDLETQTKLEHARTKELEQSLLFEKT 477
Cdd:pfam12128 188 MHSKEGKFRDVKSMIVAilEDDGVVPPKSRLNRQQveHWIRDIQAIAGIMKIRPEFTKLQQEFNTLESAELRLSHLHFGY 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 478 KADKLQRELEDTRVATVSE--KSRIMELEKDLAlraQEVAELRRRLESSKppgdvdmslsllQEISALQEKLEAIHTDH- 554
Cdd:pfam12128 268 KSDETLIASRQEERQETSAelNQLLRTLDDQWK---EKRDELNGELSAAD------------AAVAKDRSELEALEDQHg 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 555 ---QGEMTSLKEH------FGAREEAFQKEIKALHTATEKLSKENESLRSKLDhanKENSDVIALWKSKLE--------- 616
Cdd:pfam12128 333 aflDADIETAAADqeqlpsWQSELENLEERLKALTGKHQDVTAKYNRRRSKIK---EQNNRDIAGIKDKLAkireardrq 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 617 -TAIASHQQAME-ELKVSFSKGIGTDSAEFAELKTQIERLRL---DYQHEIESLQSKQ---------DSERSAHAKEMET 682
Cdd:pfam12128 410 lAVAEDDLQALEsELREQLEAGKLEFNEEEYRLKSRLGELKLrlnQATATPELLLQLEnfderieraREEQEAANAEVER 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 683 MQAKLMKIIKEKEDSLEA----------VKARLDSAEDQ------HLVEM--------EDTLNKLQEAE----------- 727
Cdd:pfam12128 490 LQSELRQARKRRDQASEAlrqasrrleeRQSALDELELQlfpqagTLLHFlrkeapdwEQSIGKVISPEllhrtdldpev 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 728 --------------------IKKEKFASTSEE----AVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFK 783
Cdd:pfam12128 570 wdgsvggelnlygvkldlkrIDVPEWAASEEElrerLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALK 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 784 EKDDREDQLVKAKE----KLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQ--LKLTKANENASFLQKSIG---- 853
Cdd:pfam12128 650 NARLDLRRLFDEKQsekdKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQkeQKREARTEKQAYWQVVEGalda 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 854 ------------EVTLKAEQSQQQAARKHEEEKK----ELEEKLLELEKKMETSYNQCQDLKAK---------------- 901
Cdd:pfam12128 730 qlallkaaiaarRSGAKAELKALETWYKRDLASLgvdpDVIAKLKREIRTLERKIERIAVRRQEvlryfdwyqetwlqrr 809
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 902 --YEKASSETKTKHEEILQNLQKMLADTEDKLKAAQ---EANRDLMQDMEELKTQAD--KAKAAQTAEDAMQimEQMTKE 974
Cdd:pfam12128 810 prLATQLSNIERAISELQQQLARLIADTKLRRAKLEmerKASEKQQVRLSENLRGLRceMSKLATLKEDANS--EQAQGS 887
|
730 740
....*....|....*....|....*...
gi 1907165194 975 KTETLASLEDTKQTNARLQNELDTLKEN 1002
Cdd:pfam12128 888 IGERLAQLEDLKLKRDYLSESVKKYVEH 915
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
972-1224 |
7.76e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 7.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 972 TKEKTETLASLEDTKQTNARLQNELDTLK--ENNLKTVEELNKSKELL---SVENQKMEEFKK--EIETLKQA------- 1037
Cdd:COG3206 63 PQSSDVLLSGLSSLSASDSPLETQIEILKsrPVLERVVDKLNLDEDPLgeeASREAAIERLRKnlTVEPVKGSnvieisy 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1038 -------AAQKSQQL-SALQEENVKL-AEELGRTRDEvtshqkLEEERSVLNNQLLEMKKRESEFRK-----DADEEKAS 1103
Cdd:COG3206 143 tspdpelAAAVANALaEAYLEQNLELrREEARKALEF------LEEQLPELRKELEEAEAALEEFRQknglvDLSEEAKL 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1104 LQKSISLTSALLTEKDAELEKLRNEVTVLR------GENATAKSLHSVVQTLESDKVKLELKVKNLELQLKEN------- 1170
Cdd:COG3206 217 LLQQLSELESQLAEARAELAEAEARLAALRaqlgsgPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNhpdvial 296
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1907165194 1171 KRQLSSSSGNTDAQAEEDERAQESQIDFLNSVIVDLQRKNQDLKMKVEMMSEAA 1224
Cdd:COG3206 297 RAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELE 350
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
455-677 |
8.12e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 8.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 455 ETQTKLE--HARTKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPP----- 527
Cdd:COG4942 24 EAEAELEqlQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEleaqk 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 528 GDVDMSLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDV 607
Cdd:COG4942 104 EELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAEL 183
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 608 IALwKSKLETAIASHQQAMEELKVSFSKgigtDSAEFAELKTQIERLrldyQHEIESLQSKQDSERSAHA 677
Cdd:COG4942 184 EEE-RAALEALKAERQKLLARLEKELAE----LAAELAELQQEAEEL----EALIARLEAEAAAAAERTP 244
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
535-834 |
9.71e-04 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 42.99 E-value: 9.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 535 SLLQEISALQEKLEAIHTDHQGEMTSLKEHFgareeafQKEIKALHTATEKLSKENESLRSKLDHANKENSDVialwKSK 614
Cdd:pfam00038 22 FLEQQNKLLETKISELRQKKGAEPSRLYSLY-------EKEIEDLRRQLDTLTVERARLQLELDNLRLAAEDF----RQK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 615 LETAIAsHQQAMEelkvsfskgigtdsAEFAELKTQIERL---RLDYQHEIESLQSKQDSERSAHAKEMETMQAKLmkii 691
Cdd:pfam00038 91 YEDELN-LRTSAE--------------NDLVGLRKDLDEAtlaRVDLEAKIESLKEELAFLKKNHEEEVRELQAQV---- 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 692 kekedSLEAVKARLDSAE----DQHLVEMED------TLNKLQEAEIKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQF 761
Cdd:pfam00038 152 -----SDTQVNVEMDAARkldlTSALAEIRAqyeeiaAKNREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRTI 226
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907165194 762 NVLSSELEKLRenltdmeakfKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEEL 834
Cdd:pfam00038 227 QSLEIELQSLK----------KQKASLERQLAETEERYELQLADYQELISELEAELQETRQEMARQLREYQEL 289
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
764-1232 |
1.19e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.17 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 764 LSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEimkmsgdnSSQLTKMNDELRLKERSVEELQLKLTKANE 843
Cdd:pfam05483 101 LKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQE--------NKDLIKENNATRHLCNLLKETCARSAEKTK 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 844 NASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETK----------TKH 913
Cdd:pfam05483 173 KYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEkqvsllliqiTEK 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 914 EEILQNLQKMLADTEDK--------------LKAAQEANRDLMQDMEELKTQADKAKAAQTA-EDAMQI----MEQMTKE 974
Cdd:pfam05483 253 ENKMKDLTFLLEESRDKanqleektklqdenLKELIEKKDHLTKELEDIKMSLQRSMSTQKAlEEDLQIatktICQLTEE 332
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 975 KTETLASLEDTKQTNARLQNELDTlkennlkTVEELnksKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVK 1054
Cdd:pfam05483 333 KEAQMEELNKAKAAHSFVVTEFEA-------TTCSL---EELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNN 402
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1055 LAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRG 1134
Cdd:pfam05483 403 KEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEK 482
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1135 ENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQI---DFLNSVIVDLQRKNQ 1211
Cdd:pfam05483 483 EKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMnlrDELESVREEFIQKGD 562
|
490 500
....*....|....*....|.
gi 1907165194 1212 DLKMKVEMMSEAALNGNGEDL 1232
Cdd:pfam05483 563 EVKCKLDKSEENARSIEYEVL 583
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
893-1213 |
1.23e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 893 NQCQDLKAKYEKASSETKTKhEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKaaqtaedamQIMEQMT 972
Cdd:TIGR04523 33 TEEKQLEKKLKTIKNELKNK-EKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNK---------DKINKLN 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 973 KEKTETLASLEDTKQTNARLQNELDTLK-------ENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQL 1045
Cdd:TIGR04523 103 SDLSKINSEIKNDKEQKNKLEVELNKLEkqkkenkKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEK 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1046 SALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSA-------LLTEK 1118
Cdd:TIGR04523 183 LNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNtqtqlnqLKDEQ 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1119 DAELEKLRNEVTVLRGENATAKSLHSVVQTLESD-----KVKLELKVKNLELQLKENKRQLSsssgntdaQAEEDERAQE 1193
Cdd:TIGR04523 263 NKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEisdlnNQKEQDWNKELKSELKNQEKKLE--------EIQNQISQNN 334
|
330 340
....*....|....*....|
gi 1907165194 1194 SQIDFLNSVIVDLQRKNQDL 1213
Cdd:TIGR04523 335 KIISQLNEQISQLKKELTNS 354
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
917-1094 |
1.41e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 917 LQNLQKMLADTEDKLKAAQEANR---------DLMQDMEELKTQADKAKAA-QTAEDAMQIMEQMTKEKTETLASLEDT- 985
Cdd:COG3206 184 LPELRKELEEAEAALEEFRQKNGlvdlseeakLLLQQLSELESQLAEARAElAEAEARLAALRAQLGSGPDALPELLQSp 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 986 ---------KQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLA 1056
Cdd:COG3206 264 viqqlraqlAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARL 343
|
170 180 190
....*....|....*....|....*....|....*...
gi 1907165194 1057 EELGRTRDEVtshQKLEEERSVLNNQLLEMKKRESEFR 1094
Cdd:COG3206 344 AELPELEAEL---RRLEREVEVARELYESLLQRLEEAR 378
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
354-834 |
1.54e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 354 EALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALAR-DGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEE 432
Cdd:COG4913 255 EPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAElEELRAELARLEAELERLEARLDALREELDELEAQIRG 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 433 EK-RKVEDLQFRVEEESITKGDLETQTKLEHARTKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRimeLEKDLALRA 511
Cdd:COG4913 335 NGgDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEA---LEEALAEAE 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 512 QEVAELRRRLESskppgdvdmslsLLQEISALQEKLEAIHTDHQGEMTSLKEHFG----------------AREEAFQKE 575
Cdd:COG4913 412 AALRDLRRELRE------------LEAEIASLERRKSNIPARLLALRDALAEALGldeaelpfvgelievrPEEERWRGA 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 576 I-KALHT--------------ATEKLskENESLRSKLDhankenSDVIALWKSKLETAIASHQQAMEELKVSfskgigtD 640
Cdd:COG4913 480 IeRVLGGfaltllvppehyaaALRWV--NRLHLRGRLV------YERVRTGLPDPERPRLDPDSLAGKLDFK-------P 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 641 SAEFAELKTQIERlRLDYQ--HEIESL-----------QSKQDSERSAHAKEMETMQ------------AKLMKIIKEKE 695
Cdd:COG4913 545 HPFRAWLEAELGR-RFDYVcvDSPEELrrhpraitragQVKGNGTRHEKDDRRRIRSryvlgfdnraklAALEAELAELE 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 696 DSLEAVKARLDSAEDQHlvemeDTLNKLQEAEIKKEKFASTSEEAVSAQTRMQdtvnklhqkeeqfnvlssELEKLRENL 775
Cdd:COG4913 624 EELAEAEERLEALEAEL-----DALQERREALQRLAEYSWDEIDVASAEREIA------------------ELEAELERL 680
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 1907165194 776 TDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEEL 834
Cdd:COG4913 681 DASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAA 739
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
374-580 |
1.93e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 374 RAEVAKATSHVGEIEQELALARDGHDQHvlelEAKMDQLRTMV-----EAADREKVELLNQLEEEKRKVEDLQFRVEEES 448
Cdd:PRK04863 448 QAKEQEATEELLSLEQKLSVAQAAHSQF----EQAYQLVRKIAgevsrSEAWDVARELLRRLREQRHLAEQLQQLRMRLS 523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 449 ITKGDLETQTKLEHARtKELEQSLLFEKTKADKLQRELED--TRVATVSE-KSRIMELEKDLALRAQEVAELRRRLESSK 525
Cdd:PRK04863 524 ELEQRLRQQQRAERLL-AEFCKRLGKNLDDEDELEQLQEEleARLESLSEsVSEARERRMALRQQLEQLQARIQRLAARA 602
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907165194 526 PPG-DVDMSLSLLQEISALQ-------EKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALH 580
Cdd:PRK04863 603 PAWlAAQDALARLREQSGEEfedsqdvTEYMQQLLERERELTVERDELAARKQALDEEIERLS 665
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
787-1039 |
2.00e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 2.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 787 DREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQA 866
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 867 ARKheeekkeleekllelekkmetsynqcQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDME 946
Cdd:COG4942 100 EAQ--------------------------KEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 947 ELK-TQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKME 1025
Cdd:COG4942 154 ELRaDLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
250
....*....|....
gi 1907165194 1026 EFKKEIETLKQAAA 1039
Cdd:COG4942 234 AEAAAAAERTPAAG 247
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
404-852 |
2.05e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.58 E-value: 2.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 404 ELEAKMDQLRTMveaaDREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARTKELEQSLLFEKTKADKLQ 483
Cdd:PRK01156 333 VLQKDYNDYIKK----KSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIK 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 484 RELEDTRVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPPGDVDMSLSLLQEisalqEKLEAIhtdhqgemtslKE 563
Cdd:PRK01156 409 KELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGE-----EKSNHI-----------IN 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 564 HFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKEnsdvialwksKLETAIASHQQaMEELKVSFSKgIGTDSAE 643
Cdd:PRK01156 473 HYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESE----------EINKSINEYNK-IESARADLED-IKIKINE 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 644 FAELKTQIERLRLDYQH-EIESLQSKQDSERSAHAkemetmQAKLMKIikekedslEAVKARLDSAEDQhlveMEDTLNK 722
Cdd:PRK01156 541 LKDKHDKYEEIKNRYKSlKLEDLDSKRTSWLNALA------VISLIDI--------ETNRSRSNEIKKQ----LNDLESR 602
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 723 LQEAEIKKEKFASTSEEAVSaqtRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLeND 802
Cdd:PRK01156 603 LQEIEIGFPDDKSYIDKSIR---EIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRI-ND 678
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 1907165194 803 IAEIMKMSgdnSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSI 852
Cdd:PRK01156 679 IEDNLKKS---RKALDDAKANRARLESTIEILRTRINELSDRINDINETL 725
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
773-1150 |
2.15e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 773 ENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEImkmsgdnssqltkmnDELRLKERSVEELQLKLTKANENASFLQK-S 851
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEEL---------------EELEAELEELREELEKLEKLLQLLPLYQElE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 852 IGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKL 931
Cdd:COG4717 136 ALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEEL 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 932 KAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQI--------------------------------------MEQMTK 973
Cdd:COG4717 216 EEAQEELEELEEELEQLENELEAAALEERLKEARLLlliaaallallglggsllsliltiagvlflvlgllallFLLLAR 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 974 EKTETLASLEDTKQTNAR-------LQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQlS 1046
Cdd:COG4717 296 EKASLGKEAEELQALPALeeleeeeLEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIA-A 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1047 ALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEkaSLQKSISLTSALLTEKDAELEKLR 1126
Cdd:COG4717 375 LLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEE--ELEEELEELEEELEELEEELEELR 452
|
410 420
....*....|....*....|....
gi 1907165194 1127 NEVTVLRGENATAKSLHSVVQTLE 1150
Cdd:COG4717 453 EELAELEAELEQLEEDGELAELLQ 476
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
826-1059 |
2.21e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.59 E-value: 2.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 826 LKERSVEELQLKLTKAN-ENASFLQKSIGEVTLKAEQSQQQAARkheeekkeleeklleLEKKMETSYNQCQDLKAKYEK 904
Cdd:PRK11281 48 LNKQKLLEAEDKLVQQDlEQTLALLDKIDRQKEETEQLKQQLAQ---------------APAKLRQAQAELEALKDDNDE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 905 ASSETKTKHEeiLQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAedAMQIMEQMTKEKTETLASLED 984
Cdd:PRK11281 113 ETRETLSTLS--LRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYA--NSQRLQQIRNLLKGGKVGGKA 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 985 TKQT-----NARL-----QNELD-TLKENNLKTVEELNKSKELLSVENQKMEEF----------KKEIETLKQAAAQKSQ 1043
Cdd:PRK11281 189 LRPSqrvllQAEQallnaQNDLQrKSLEGNTQLQDLLQKQRDYLTARIQRLEHQlqllqeainsKRLTLSEKTVQEAQSQ 268
|
250
....*....|....*.
gi 1907165194 1044 QLSALQEENVKLAEEL 1059
Cdd:PRK11281 269 DEAARIQANPLVAQEL 284
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
381-801 |
2.40e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 42.15 E-value: 2.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 381 TSHVGEIEQELALARDGHDQ-HVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEeesitkgdlETQTK 459
Cdd:pfam06160 59 TKSLPDIEELLFEAEELNDKyRFKKAKKALDEIEELLDDIEEDIKQILEELDELLESEEKNREEVE---------ELKDK 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 460 LEHARTKELEQSLLFEKTkADKLQRELED-----TRVATVSEKSRIMELEKDLALRAQEVAELRRRLESSkPPGDVDMSL 534
Cdd:pfam06160 130 YRELRKTLLANRFSYGPA-IDELEKQLAEieeefSQFEELTESGDYLEAREVLEKLEEETDALEELMEDI-PPLYEELKT 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 535 SL---LQEISALQEKLEaihtdhqgemtslKEHFGAREEAFQKEIKALHTATEKLSKENESLRskLDHANKENSDV---I 608
Cdd:pfam06160 208 ELpdqLEELKEGYREME-------------EEGYALEHLNVDKEIQQLEEQLEENLALLENLE--LDEAEEALEEIeerI 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 609 ALWKSKLETAIASHQQAMEELKVsFSKGIGTDSAEFAELKTQIERLRLDYQ---HEIESLQSKQdsersAHAKEMETMQA 685
Cdd:pfam06160 273 DQLYDLLEKEVDAKKYVEKNLPE-IEDYLEHAEEQNKELKEELERVQQSYTlneNELERVRGLE-----KQLEELEKRYD 346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 686 KLMKIIKEKE-------DSLEAVKARLDSAEDQHlVEMEDTLNKLQEAEIKKEKFASTSEEAVSAQTRmqdTVNKLH--- 755
Cdd:pfam06160 347 EIVERLEEKEvayselqEELEEILEQLEEIEEEQ-EEFKESLQSLRKDELEAREKLDEFKLELREIKR---LVEKSNlpg 422
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1907165194 756 ---QKEEQFNVLSSELEKLRENLT----DMEAKFKEKDDREDQLVKAKEKLEN 801
Cdd:pfam06160 423 lpeSYLDYFFDVSDEIEDLADELNevplNMDEVNRLLDEAQDDVDTLYEKTEE 475
|
|
| HAP1_N |
pfam04849 |
HAP1 N-terminal conserved region; This family represents an N-terminal conserved region found ... |
1043-1209 |
2.58e-03 |
|
HAP1 N-terminal conserved region; This family represents an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologs. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntington's disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34.
Pssm-ID: 461455 [Multi-domain] Cd Length: 309 Bit Score: 41.55 E-value: 2.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1043 QQLSALQEENVKLAEELGRTRDEVT--SHQ--KLEEERSVLNNQLLEMKKRESE-FRKDADEEKASLQKSISLTsaLLTE 1117
Cdd:pfam04849 94 KQNSVLTERNEALEEQLGSAREEILqlRHElsKKDDLLQIYSNDAEESETESSCsTPLRRNESFSSLHGCVQLD--ALQE 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1118 KDAELE----KLRNEVTVLRGENATaksLHSVVQTLESDKVKlelkvknlelQLKENKRQLSSSSGNTDAQAEEDERAQE 1193
Cdd:pfam04849 172 KLRGLEeenlKLRSEASHLKTETDT---YEEKEQQLMSDCVE----------QLSEANQQMAELSEELARKMEENLRQQE 238
|
170
....*....|....*.
gi 1907165194 1194 sQIDFLNSVIVDLQRK 1209
Cdd:pfam04849 239 -EITSLLAQIVDLQHK 253
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
497-974 |
2.63e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 2.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 497 KSRIMElekdlALRAQEVAELRRRLES-SKPPGDVDmsLSLLQEISALQEKLEAIhtdhqgemtslkehfGAREEAFQKE 575
Cdd:COG4717 36 KSTLLA-----FIRAMLLERLEKEADElFKPQGRKP--ELNLKELKELEEELKEA---------------EEKEEEYAEL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 576 IKALHTATEKLsKENESLRSKLDHANKENSDVIALW-----KSKLETAIASHQQAMEELKVSFskgigtdsAEFAELKTQ 650
Cdd:COG4717 94 QEELEELEEEL-EELEAELEELREELEKLEKLLQLLplyqeLEALEAELAELPERLEELEERL--------EELRELEEE 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 651 IERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKI---IKEKEDSLEAVKARLDSAEDQhLVEMEDTLNKLQEAE 727
Cdd:COG4717 165 LEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELqqrLAELEEELEEAQEELEELEEE-LEQLENELEAAALEE 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 728 -IKKEKFASTSEEAVSAQTRMQDTVNKLHQKEE------------QFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVK 794
Cdd:COG4717 244 rLKEARLLLLIAAALLALLGLGGSLLSLILTIAgvlflvlgllalLFLLLAREKASLGKEAEELQALPALEELEEEELEE 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 795 AKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQ---KSIGEVTLKAEQSQQQAARKHE 871
Cdd:COG4717 324 LLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEagvEDEEELRAALEQAEEYQELKEE 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 872 EEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEiLQNLQKMLADTEDKLKAAQEANR--DLMQDMEELK 949
Cdd:COG4717 404 LEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEE-LEELREELAELEAELEQLEEDGElaELLQELEELK 482
|
490 500
....*....|....*....|....*.
gi 1907165194 950 TQ-ADKAKAAQTAEDAMQIMEQMTKE 974
Cdd:COG4717 483 AElRELAEEWAALKLALELLEEAREE 508
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
612-801 |
2.83e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.12 E-value: 2.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 612 KSKLETAIASHQQAMEELKvsfskgigTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMEtmqaklmKII 691
Cdd:PRK00409 515 KEKLNELIASLEELERELE--------QKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQ-------QAI 579
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 692 KEKEDSLEAVKARLdsaedQHLVEMEDTLNKLQEAEIKKEKFASTSEEAVSAQT---RMQDTVN--------KLHQKEEq 760
Cdd:PRK00409 580 KEAKKEADEIIKEL-----RQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKkqkEKQEELKvgdevkylSLGQKGE- 653
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1907165194 761 fnVLS----SELE------KLRENLTDMEAKFKEKDDREDQLVKAKEKLEN 801
Cdd:PRK00409 654 --VLSipddKEAIvqagimKMKVPLSDLEKIQKPKKKKKKKPKTVKPKPRT 702
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
480-801 |
2.88e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 41.59 E-value: 2.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 480 DKLQRELEDTRVATVSEKSRIMELEKDLALRAQEVAELRR-----RLESSKPPGDVDMSLSLLQEISALQEKLEAIHTDH 554
Cdd:pfam19220 30 SQLIEPIEAILRELPQAKSRLLELEALLAQERAAYGKLRRelaglTRRLSAAEGELEELVARLAKLEAALREAEAAKEEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 555 QGEMTSLKehfgAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKensdviALWKSKLETAIASHQQAM-EELKVSF 633
Cdd:pfam19220 110 RIELRDKT----AQAEALERQLAAETEQNRALEEENKALREEAQAAEK------ALQRAEGELATARERLALlEQENRRL 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 634 SKGIGTDSAEFAELK---TQIERLRLDYQHEIESLQSKQDSERSAHAK-------EMETMQAKLMKIIKEkedsLEAVKA 703
Cdd:pfam19220 180 QALSEEQAAELAELTrrlAELETQLDATRARLRALEGQLAAEQAERERaeaqleeAVEAHRAERASLRMK----LEALTA 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 704 RLDSAEdQHLVEMEDTLNKLQEAEIKKE-KFASTSEEAVSAQTRMQDTVNKLHQKEEQFNvlssELEKLRENLTD-MEAK 781
Cdd:pfam19220 256 RAAATE-QLLAEARNQLRDRDEAIRAAErRLKEASIERDTLERRLAGLEADLERRTQQFQ----EMQRARAELEErAEML 330
|
330 340
....*....|....*....|
gi 1907165194 782 FKEKDDREDQLVKAKEKLEN 801
Cdd:pfam19220 331 TKALAAKDAALERAEERIAS 350
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
356-525 |
2.90e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 2.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 356 LKEKQQHIEQLLAE---------RDLERAEVAKATSHvGEIEQELALARDghdQHVLELEAKMDQLRTMVEAaDREKVEL 426
Cdd:pfam17380 355 QEERKRELERIRQEeiameisrmRELERLQMERQQKN-ERVRQELEAARK---VKILEEERQRKIQQQKVEM-EQIRAEQ 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 427 LNQLEEEKRKVEDLQFRvEEESITKGDLETQTKLEHARTKELEQ---SLLFEKTKADK----------LQRELEDTRVAT 493
Cdd:pfam17380 430 EEARQREVRRLEEERAR-EMERVRLEEQERQQQVERLRQQEEERkrkKLELEKEKRDRkraeeqrrkiLEKELEERKQAM 508
|
170 180 190
....*....|....*....|....*....|..
gi 1907165194 494 VSEKSRIMELEKDLALRAQEVAELRRRLESSK 525
Cdd:pfam17380 509 IEEERKRKLLEKEMEERQKAIYEEERRREAEE 540
|
|
| CHASE3 |
COG5278 |
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms]; |
353-775 |
3.10e-03 |
|
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms];
Pssm-ID: 444089 [Multi-domain] Cd Length: 530 Bit Score: 41.82 E-value: 3.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 353 QEALKEKQQHIEQLLAERDLERAEVAK----ATSHVGEIEQELALARDGHDQHVLELE------AKMDQLRT-MVEAADR 421
Cdd:COG5278 85 RAEIDELLAELRSLTADNPEQQARLDElealIDQWLAELEQVIALRRAGGLEAALALVrsgegkALMDEIRArLLLLALA 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 422 EKVELLNQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARTKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIM 501
Cdd:COG5278 165 LAALLLAAAALLLLLLALAALLALAELLLLALARALAALLLLLLLEAELAAAAALLAAAAALAALAALELLAALALALAL 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 502 ELEKDLALRAQEVAELRRRLESSKPPGDVDMSLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHT 581
Cdd:COG5278 245 LLAALLLALLAALALAALLAAALLALAALLLALAAAAALAAAAALELAAAEALALAELELELLLAAAAAAAAAAAAAAAA 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 582 ATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHE 661
Cdd:COG5278 325 LAALLALALATALAAAAAALALLAALLAEAAAAAAEEAEAAAEAAAAALAGLAEVEAEGAAEAVELEVLAIAAAAAAAAA 404
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 662 IESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKKEKFASTSEEAV 741
Cdd:COG5278 405 EAAAAAAAAAAASAAEALELAEALAEALALAEEEALALAAASSELAEAGAALALAAAEALAEELAAVAALAALAAAAAAL 484
|
410 420 430
....*....|....*....|....*....|....
gi 1907165194 742 SAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENL 775
Cdd:COG5278 485 AEAEAAAALAAAAALSLALALAALLLAAAEAALA 518
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
404-598 |
3.74e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 3.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 404 ELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARTKELEQSLLFEKT--KADK 481
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkEYEA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 482 LQRELEdtrvatvSEKSRIMELEKDLalraqevaelrrrlesskppgdvdmsLSLLQEISALQEKLEAIhtdhQGEMTSL 561
Cdd:COG1579 94 LQKEIE-------SLKRRISDLEDEI--------------------------LELMERIEELEEELAEL----EAELAEL 136
|
170 180 190
....*....|....*....|....*....|....*..
gi 1907165194 562 KEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLD 598
Cdd:COG1579 137 EAELEEKKAELDEELAELEAELEELEAEREELAAKIP 173
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
887-1174 |
4.01e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 41.65 E-value: 4.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 887 KMETSYNQCQdlkakYEKASSETKTKHeeiLQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKaaQTAEDAMQ 966
Cdd:pfam05557 35 KASALKRQLD-----RESDRNQELQKR---IRLLEKREAEAEEALREQAELNRLKKKYLEALNKKLNEKE--SQLADARE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 967 IMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENN----------LKTVEELNKSKELLSVENQKMEEFKKEIetlkQ 1036
Cdd:pfam05557 105 VISCLKNELSELRRQIQRAELELQSTNSELEELQERLdllkakaseaEQLRQNLEKQQSSLAEAEQRIKELEFEI----Q 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1037 AAAQKSQQLSALQEENVKLAE---ELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKdADEEKASLQKSISLTSA 1113
Cdd:pfam05557 181 SQEQDSEIVKNSKSELARIPElekELERLREHNKHLNENIENKLLLKEEVEDLKRKLEREEK-YREEAATLELEKEKLEQ 259
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907165194 1114 LLTE-----KDAEL-----EKLRNEVTVLRGENATAK----SLHSVVQTLESDKVKLELKVKNLELQLKENKRQL 1174
Cdd:pfam05557 260 ELQSwvklaQDTGLnlrspEDLSRRIEQLQQREIVLKeensSLTSSARQLEKARRELEQELAQYLKKIEDLNKKL 334
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
695-953 |
4.04e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 4.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 695 EDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKKEKFASTseeavsaqtrmqdtvNKLHQKEEQFNVLSSELEKLREN 774
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQK---------------NGLVDLSEEAKLLLQQLSELESQ 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 775 LTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMkmsgdNSSQLTKMNDELRLKERSVEELQLKLTKANEnasflqksige 854
Cdd:COG3206 228 LAEARAELAEAEARLAALRAQLGSGPDALPELL-----QSPVIQQLRAQLAELEAELAELSARYTPNHP----------- 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 855 vTLKAEQSQQQAARKheEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTkheeiLQNLQKMLADTEDKLKAA 934
Cdd:COG3206 292 -DVIALRAQIAALRA--QLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAE-----LPELEAELRRLEREVEVA 363
|
250
....*....|....*....
gi 1907165194 935 QEANRDLMQDMEELKTQAD 953
Cdd:COG3206 364 RELYESLLQRLEEARLAEA 382
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
974-1197 |
4.33e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 4.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 974 EKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQK----SQQLSALQ 1049
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERreelGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1050 E--------ENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSIsltsALLTEKDAE 1121
Cdd:COG3883 97 RsggsvsylDVLLGSESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALK----AELEAAKAE 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907165194 1122 LEKLRNEVTVLrgenatakslhsvVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQID 1197
Cdd:COG3883 173 LEAQQAEQEAL-------------LAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAA 235
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
694-1092 |
4.77e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.60 E-value: 4.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 694 KEDSLEAVKARLDSAEDQHLVEMEDTLNKLQE-AEIKKEKFASTSEEAVSAQTRMQDTVNKLHQKEeqfnvlsSELEKLR 772
Cdd:COG5022 898 KLVNLELESEIIELKKSLSSDLIENLEFKTELiARLKKLLNNIDLEEGPSIEYVKLPELNKLHEVE-------SKLKETS 970
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 773 ENLTDMeakFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSqLTKMNDELRLKERSVEELQLKLTKANENASFL---- 848
Cdd:COG5022 971 EEYEDL---LKKSTILVREGNKANSELKNFKKELAELSKQYGA-LQESTKQLKELPVEVAELQSASKIISSESTELsilk 1046
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 849 --QKSIGEVTLKAEQSQQQAarKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLqkmlad 926
Cdd:COG5022 1047 plQKLKGLLLLENNQLQARY--KALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFI------ 1118
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 927 tedklkAAQEANRDLMQDMEELKTQadkakAAQTAEDAMQIME--QMTKEKTETLASLEDTKQTNARLQNELDTLKENNL 1004
Cdd:COG5022 1119 ------VAQMIKLNLLQEISKFLSQ-----LVNTLEPVFQKLSvlQLELDGLFWEANLEALPSPPPFAALSEKRLYQSAL 1187
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1005 KTVEELNKSKELLSVENQKMEEFKKEIETL-KQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKL--EEERSVLN- 1080
Cdd:COG5022 1188 YDEKSKLSSSEVNDLKNELIALFSKIFSGWpRGDKLKKLISEGWVPTEYSTSLKGFNNLNKKFDTPASMsnEKLLSLLNs 1267
|
410
....*....|...
gi 1907165194 1081 -NQLLEMKKRESE 1092
Cdd:COG5022 1268 iDNLLSSYKLEEE 1280
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
930-1247 |
4.81e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 41.38 E-value: 4.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 930 KLKAAQEANRDLMQDMEELKTQADKAKaaqtaEDAMQIMEQMTKEKTETLASLEDTKQTNA----RLQNELDTLKENNLK 1005
Cdd:PLN03229 423 KREAVKTPVRELEGEVEKLKEQILKAK-----ESSSKPSELALNEMIEKLKKEIDLEYTEAviamGLQERLENLREEFSK 497
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1006 TVEELNKSKELLSVENQK-MEEFKKEI------ETLKQA-----AAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLE 1073
Cdd:PLN03229 498 ANSQDQLMHPVLMEKIEKlKDEFNKRLsrapnyLSLKYKldmlnEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIK 577
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1074 EERSVLNNQLLEMK-KRESEFRKDADEEKASLQKSISLTSA-LLTEKDAELEKLRNEvTVLRGENATAKSLHSVVQTLES 1151
Cdd:PLN03229 578 EKMEALKAEVASSGaSSGDELDDDLKEKVEKMKKEIELELAgVLKSMGLEVIGVTKK-NKDTAEQTPPPNLQEKIESLNE 656
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1152 D---KVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQIDFLNSVIVD---LQRKNQDLKMKVEMMSEAAL 1225
Cdd:PLN03229 657 EinkKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNsseLKEKFEELEAELAAARETAA 736
|
330 340
....*....|....*....|..
gi 1907165194 1226 NGNGEDLNSYDSDDQEKQSKKK 1247
Cdd:PLN03229 737 ESNGSLKNDDDKEEDSKEDGSR 758
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
892-1247 |
5.10e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.22 E-value: 5.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 892 YNQCQDLKA---KYEKASSETKTKHEEILQNlQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKA--AQTAEDAMQ 966
Cdd:COG5022 836 EEVEFSLKAevlIQKFGRSLKAKKRFSLLKK-ETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLEleSEIIELKKS 914
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 967 IMEQMTKE---KTETLASLEDTKQTNarlqnELDTLKENNLKTVEELNKskelLSVENQKMEEFKKEIE-TLKQAAAQKS 1042
Cdd:COG5022 915 LSSDLIENlefKTELIARLKKLLNNI-----DLEEGPSIEYVKLPELNK----LHEVESKLKETSEEYEdLLKKSTILVR 985
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1043 QQLSALqEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKrESEFRKDADEEKASLQKSISLTSALLtekdAEL 1122
Cdd:COG5022 986 EGNKAN-SELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQS-ASKIISSESTELSILKPLQKLKGLLL----LEN 1059
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1123 EKLRNEVTVLRGENATAKSLHSVVQTLESDKVKL-ELKVKNLELqlkeNKRQLSSSSGNTDAQAEEDERAQESQI--DFL 1199
Cdd:COG5022 1060 NQLQARYKALKLRRENSLLDDKQLYQLESTENLLkTINVKDLEV----TNRNLVKPANVLQFIVAQMIKLNLLQEisKFL 1135
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1907165194 1200 NSVIVDLQRKNQDLKMKVEMMSEAALNGNGEDLNSYDSDDQEKQSKKK 1247
Cdd:COG5022 1136 SQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAALSEKRLY 1183
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
723-1064 |
5.27e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.03 E-value: 5.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 723 LQEAEIKKEKFASTSEEAVSAQTRMQDTVNKLhqkEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLend 802
Cdd:pfam07888 47 LQAQEAANRQREKEKERYKRDREQWERQRREL---ESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDAL--- 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 803 iaeiMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQqqaarkheeekkeleekll 882
Cdd:pfam07888 121 ----LAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQ------------------- 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 883 eleKKMETSYNQCQDLKAKYEKASSETKTKHEEILQnLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAE 962
Cdd:pfam07888 178 ---AKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQ-LQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKV 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 963 DAMqimeqmtKEKTETLASLEDTKQTN---ARLQNELDTLK--ENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQA 1037
Cdd:pfam07888 254 EGL-------GEELSSMAAQRDRTQAElhqARLQAAQLTLQlaDASLALREGRARWAQERETLQQSAEADKDRIEKLSAE 326
|
330 340
....*....|....*....|....*..
gi 1907165194 1038 AAQKSQQLSALQEENVKLAEELGRTRD 1064
Cdd:pfam07888 327 LQRLEERLQEERMEREKLEVELGREKD 353
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
939-1116 |
5.37e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 40.85 E-value: 5.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 939 RDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLS 1018
Cdd:PRK12705 29 QRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1019 VENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKlAEELGRTRDEvtshqkLEEERSVLNNQLLEMKKRESEfRKDAD 1098
Cdd:PRK12705 109 EREKALSARELELEELEKQLDNELYRVAGLTPEQAR-KLLLKLLDAE------LEEEKAQRVKKIEEEADLEAE-RKAQN 180
|
170
....*....|....*...
gi 1907165194 1099 EEKASLQKSISLTSALLT 1116
Cdd:PRK12705 181 ILAQAMQRIASETASDLS 198
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
949-1197 |
6.24e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.66 E-value: 6.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 949 KTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFK 1028
Cdd:COG4372 21 KTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQ 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1029 KEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVlnnqllEMKKRESEFRKDADEEKASLQKSI 1108
Cdd:COG4372 101 EELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREE------ELKELEEQLESLQEELAALEQELQ 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 1109 SLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEED 1188
Cdd:COG4372 175 ALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEE 254
|
....*....
gi 1907165194 1189 ERAQESQID 1197
Cdd:COG4372 255 VILKEIEEL 263
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
917-1079 |
6.25e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 6.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 917 LQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQT-AEDAMQIMEQMTKEKTETLASLEDTKQTNArLQNE 995
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKrLELEIEEVEARIKKYEEQLGNVRNNKEYEA-LQKE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 996 LDTLKennlKTVEELNksKELLSVENQKmEEFKKEIETLKQAAAQKSQQLSALQEEnvkLAEELGRTRDEVtshQKLEEE 1075
Cdd:COG1579 98 IESLK----RRISDLE--DEILELMERI-EELEEELAELEAELAELEAELEEKKAE---LDEELAELEAEL---EELEAE 164
|
....
gi 1907165194 1076 RSVL 1079
Cdd:COG1579 165 REEL 168
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
754-1107 |
6.60e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.11 E-value: 6.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 754 LHQKEEQFNVLSSELEKLR--ENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQ-----LTKMNDELRL 826
Cdd:TIGR00618 158 LKAKSKEKKELLMNLFPLDqyTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQvlekeLKHLREALQQ 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 827 KERSVEELQLKLTKANEnASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKAS 906
Cdd:TIGR00618 238 TQQSHAYLTQKREAQEE-QLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTEL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 907 SETKTKHEEILQNLQKMLADTEDkLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTK 986
Cdd:TIGR00618 317 QSKMRSRAKLLMKRAAHVKQQSS-IEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKL 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 987 QTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSA----LQEENVKLAEELGRT 1062
Cdd:TIGR00618 396 QSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLekihLQESAQSLKEREQQL 475
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1907165194 1063 RDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKS 1107
Cdd:TIGR00618 476 QTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDI 520
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
973-1129 |
7.02e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 7.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 973 KEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKeietlKQAAAQKSQQLSALQEEN 1052
Cdd:COG1579 24 HRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEE-----QLGNVRNNKEYEALQKEI 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907165194 1053 VKLAEELGRTRDEVtshQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEV 1129
Cdd:COG1579 99 ESLKRRISDLEDEI---LELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKI 172
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
907-1046 |
7.37e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 40.33 E-value: 7.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 907 SETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELK-----TQADKAKAAQTAEDAMQIMEQMTKEKTETLAS 981
Cdd:PRK09039 45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRaslsaAEAERSRLQALLAELAGAGAAAEGRAGELAQE 124
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907165194 982 LEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQ----AAAQKSQQLS 1046
Cdd:PRK09039 125 LDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRrlnvALAQRVQELN 193
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
352-608 |
7.49e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.77 E-value: 7.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 352 LQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELalarDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLE 431
Cdd:TIGR04523 361 KQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKI----QNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETII 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 432 EEKRKVEDLQFRVEEESITKGDLETQTKLEHARTKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELEKDLALRA 511
Cdd:TIGR04523 437 KNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLT 516
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 512 QEVAELR---RRLESSKppgdvdmsLSLLQEISALQEKLEAIHTDHQgemtslKEHFGAREEAFQKEIKALHTATEKLSK 588
Cdd:TIGR04523 517 KKISSLKekiEKLESEK--------KEKESKISDLEDELNKDDFELK------KENLEKEIDEKNKEIEELKQTQKSLKK 582
|
250 260
....*....|....*....|
gi 1907165194 589 ENESLRSKLDHANKENSDVI 608
Cdd:TIGR04523 583 KQEEKQELIDQKEKEKKDLI 602
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
914-1078 |
8.26e-03 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 40.37 E-value: 8.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 914 EEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKA----KAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTN 989
Cdd:pfam05262 188 EDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDAdkaqQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTS 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165194 990 ARLQNEldTLKENNLKTVEELNK-----SKELLSVENQKMEEFKKEIETLKQAAAQKSQQlsaLQEENVKLAEELGRTRD 1064
Cdd:pfam05262 268 SPKEDK--QVAENQKREIEKAQIeikknDEEALKAKDHKAFDLKQESKASEKEAEDKELE---AQKKREPVAEDLQKTKP 342
|
170
....*....|....
gi 1907165194 1065 EVTSHQKLEEERSV 1078
Cdd:pfam05262 343 QVEAQPTSLNEDAI 356
|
|
| |
