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Conserved domains on  [gi|1952762066|ref|XP_038369692|]
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kinesin-like protein KIF1C isoform X2 [Canis lupus familiaris]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
KISc_KIF1A_KIF1B cd01365
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A ...
14-334 0e+00

Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.


:

Pssm-ID: 276816 [Multi-domain]  Cd Length: 361  Bit Score: 593.56  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   14 VTIINPKQS-------KDAPKSFTFDYSYWSHTSaEDPQFASQQQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAGKSYTM 86
Cdd:cd01365     32 TTLKNPKQAdknnkatREVPKSFSFDYSYWSHDS-EDPNYASQEQVYEDLGEELLQHAFEGYNVCLFAYGQTGSGKSYTM 110
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   87 MGRQEpgQQGIVPQLCEDLFSRVNKNESAQLSYSVEVSYMEIYCERVRDLLNPKS---RGSLRVREHPILGPYVQDLSKL 163
Cdd:cd01365    111 MGTQE--QPGIIPRLCEDLFSRIADTTNQNMSYSVEVSYMEIYNEKVRDLLNPKPkknKGNLKVREHPVLGPYVEDLSKL 188
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  164 AVTSYADIADLMDCGNKARTVAATNMNETSSRSHAVFTIVFTQRCHDQLTGLDSEKVSKISLVDLAGSERADSSGARGMR 243
Cdd:cd01365    189 AVTSYEDIQDLMDEGNKSRTVAATNMNDTSSRSHAVFTIVLTQKRHDAETNLTTEKVSKISLVDLAGSERASSTGATGDR 268
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  244 LKEGANINKSLTTLGKVISALADLQSKK--RKSDFIPYRDSVLTWLLKENLGGNSRTAMIAALSPADINYEETLSTLRYA 321
Cdd:cd01365    269 LKEGANINKSLTTLGKVISALADMSSGKskKKSSFIPYRDSVLTWLLKENLGGNSKTAMIAAISPADINYEETLSTLRYA 348
                          330
                   ....*....|...
gi 1952762066  322 DRTKQIRCNAIIN 334
Cdd:cd01365    349 DRAKKIVNRAVVN 361
Kinesin_assoc pfam16183
Kinesin-associated;
331-501 7.54e-76

Kinesin-associated;


:

Pssm-ID: 465047 [Multi-domain]  Cd Length: 177  Bit Score: 247.45  E-value: 7.54e-76
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  331 AIINEDPNARLIRELQEEVARLRELLLAQGLS----ASALGGLKVDEGSPGGALPATSSPPAPVSPSHPPAHNGELEpSF 406
Cdd:pfam16183    1 AVINEDPNNKLIRELKDEVARLRDLLYAQGLGdiidTIAHPTKKRANTPAANASAATAAMAGASPSPSLSALSSRAA-SV 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  407 SPSAEPQI---GPEEAMERLQETEKIIAELNETWEEKLRKTEALRMEREALLAEMGVAVREDGGTVGVFSPKKTPHLVNL 483
Cdd:pfam16183   80 SSLHERIMftpGSEEAIERLKETEKIIAELNETWEEKLRKTEAIRMEREALLAEMGVAIREDGGTLGVFSPKKTPHLVNL 159
                          170
                   ....*....|....*...
gi 1952762066  484 NEDPLMSECLLYHIKDGI 501
Cdd:pfam16183  160 NEDPLMSECLLYYIKDGI 177
FHA_KIF1C cd22728
forkhead associated (FHA) domain found in kinesin-like protein KIF1C; KIF1C is a new ...
477-578 9.41e-71

forkhead associated (FHA) domain found in kinesin-like protein KIF1C; KIF1C is a new kinesin-like protein involved in vesicle transport from the Golgi apparatus to the endoplasmic reticulum. It has a microtubule plus end-directed motility. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


:

Pssm-ID: 438780 [Multi-domain]  Cd Length: 102  Bit Score: 230.14  E-value: 9.41e-71
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  477 TPHLVNLNEDPLMSECLLYHIKDGITRVGQVDVDIKLTGQFIREQHCLFRSIPQPDGEVVVTLEPCEGAETYVNGRLVTE 556
Cdd:cd22728      1 TPHLVNLNEDPLMSECLLYHIKDGVTRVGQVDVDIKLSGQFIREQHCLFRSIPNPSGEVVVTLEPCEGAETYVNGKQVTE 80
                           90       100
                   ....*....|....*....|..
gi 1952762066  557 PLVLKSGNRIVMGKNHVFRFNH 578
Cdd:cd22728     81 PLVLKSGNRIVMGKNHVFRFNH 102
 
Name Accession Description Interval E-value
KISc_KIF1A_KIF1B cd01365
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A ...
14-334 0e+00

Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.


Pssm-ID: 276816 [Multi-domain]  Cd Length: 361  Bit Score: 593.56  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   14 VTIINPKQS-------KDAPKSFTFDYSYWSHTSaEDPQFASQQQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAGKSYTM 86
Cdd:cd01365     32 TTLKNPKQAdknnkatREVPKSFSFDYSYWSHDS-EDPNYASQEQVYEDLGEELLQHAFEGYNVCLFAYGQTGSGKSYTM 110
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   87 MGRQEpgQQGIVPQLCEDLFSRVNKNESAQLSYSVEVSYMEIYCERVRDLLNPKS---RGSLRVREHPILGPYVQDLSKL 163
Cdd:cd01365    111 MGTQE--QPGIIPRLCEDLFSRIADTTNQNMSYSVEVSYMEIYNEKVRDLLNPKPkknKGNLKVREHPVLGPYVEDLSKL 188
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  164 AVTSYADIADLMDCGNKARTVAATNMNETSSRSHAVFTIVFTQRCHDQLTGLDSEKVSKISLVDLAGSERADSSGARGMR 243
Cdd:cd01365    189 AVTSYEDIQDLMDEGNKSRTVAATNMNDTSSRSHAVFTIVLTQKRHDAETNLTTEKVSKISLVDLAGSERASSTGATGDR 268
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  244 LKEGANINKSLTTLGKVISALADLQSKK--RKSDFIPYRDSVLTWLLKENLGGNSRTAMIAALSPADINYEETLSTLRYA 321
Cdd:cd01365    269 LKEGANINKSLTTLGKVISALADMSSGKskKKSSFIPYRDSVLTWLLKENLGGNSKTAMIAAISPADINYEETLSTLRYA 348
                          330
                   ....*....|...
gi 1952762066  322 DRTKQIRCNAIIN 334
Cdd:cd01365    349 DRAKKIVNRAVVN 361
Kinesin pfam00225
Kinesin motor domain;
12-327 8.99e-145

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 436.62  E-value: 8.99e-145
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   12 PPVTIINPKQSKDAPKSFTFDYSYWSHtsaedpqfASQQQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAGKSYTMMGRQE 91
Cdd:pfam00225   25 SETVESSHLTNKNRTKTFTFDKVFDPE--------ATQEDVYEETAKPLVESVLEGYNVTIFAYGQTGSGKTYTMEGSDE 96
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   92 pgQQGIVPQLCEDLFSRVNKNESaQLSYSVEVSYMEIYCERVRDLLNP--KSRGSLRVREHPILGPYVQDLSKLAVTSYA 169
Cdd:pfam00225   97 --QPGIIPRALEDLFDRIQKTKE-RSEFSVKVSYLEIYNEKIRDLLSPsnKNKRKLRIREDPKKGVYVKGLTEVEVSSAE 173
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  170 DIADLMDCGNKARTVAATNMNETSSRSHAVFTIVFTQRCHDQlTGLDSEKVSKISLVDLAGSERADSSG-ARGMRLKEGA 248
Cdd:pfam00225  174 EVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRST-GGEESVKTGKLNLVDLAGSERASKTGaAGGQRLKEAA 252
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1952762066  249 NINKSLTTLGKVISALADlqskkRKSDFIPYRDSVLTWLLKENLGGNSRTAMIAALSPADINYEETLSTLRYADRTKQI 327
Cdd:pfam00225  253 NINKSLSALGNVISALAD-----KKSKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSSNYEETLSTLRFASRAKNI 326
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
2-334 9.68e-145

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 437.00  E-value: 9.68e-145
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066     2 PSVWSACRAAPPVTIINPKQSKDAPKSFTFDYSYwshtsaedPQFASQQQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAG 81
Cdd:smart00129   21 PSVVPFPDKVGKTLTVRSPKNRQGEKKFTFDKVF--------DATASQEDVFEETAAPLVDSVLEGYNATIFAYGQTGSG 92
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066    82 KSYTMMGrqEPGQQGIVPQLCEDLFSRVNKNEsAQLSYSVEVSYMEIYCERVRDLLNPkSRGSLRVREHPILGPYVQDLS 161
Cdd:smart00129   93 KTYTMIG--TPDSPGIIPRALKDLFEKIDKRE-EGWQFSVKVSYLEIYNEKIRDLLNP-SSKKLEIREDEKGGVYVKGLT 168
                           170       180       190       200       210       220       230       240
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   162 KLAVTSYADIADLMDCGNKARTVAATNMNETSSRSHAVFTIVFTQRCHDqlTGLDSEKVSKISLVDLAGSERADSSGARG 241
Cdd:smart00129  169 EISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKN--SSSGSGKASKLNLVDLAGSERAKKTGAEG 246
                           250       260       270       280       290       300       310       320
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   242 MRLKEGANINKSLTTLGKVISALADLQskkrKSDFIPYRDSVLTWLLKENLGGNSRTAMIAALSPADINYEETLSTLRYA 321
Cdd:smart00129  247 DRLKEAGNINKSLSALGNVINALAQHS----KSRHIPYRDSKLTRLLQDSLGGNSKTLMIANVSPSSSNLEETLSTLRFA 322
                           330
                    ....*....|...
gi 1952762066   322 DRTKQIRCNAIIN 334
Cdd:smart00129  323 SRAKEIKNKPIVN 335
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
47-328 3.17e-81

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 276.23  E-value: 3.17e-81
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   47 ASQQQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAGKSYTMMGrqEPGQQGIVPQLCEDLFSRVNKNESAQlSYSVEVSYM 126
Cdd:COG5059     68 ATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSG--TEEEPGIIPLSLKELFSKLEDLSMTK-DFAVSISYL 144
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  127 EIYCERVRDLLNPKSRgSLRVREHPILGPYVQDLSKLAVTSYADIADLMDCGNKARTVAATNMNETSSRSHAVFTIVFTQ 206
Cdd:COG5059    145 EIYNEKIYDLLSPNEE-SLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELAS 223
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  207 RChdqlTGLDSEKVSKISLVDLAGSERADSSGARGMRLKEGANINKSLTTLGKVISALadlqSKKRKSDFIPYRDSVLTW 286
Cdd:COG5059    224 KN----KVSGTSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINAL----GDKKKSGHIPYRESKLTR 295
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|..
gi 1952762066  287 LLKENLGGNSRTAMIAALSPADINYEETLSTLRYADRTKQIR 328
Cdd:COG5059    296 LLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIK 337
Kinesin_assoc pfam16183
Kinesin-associated;
331-501 7.54e-76

Kinesin-associated;


Pssm-ID: 465047 [Multi-domain]  Cd Length: 177  Bit Score: 247.45  E-value: 7.54e-76
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  331 AIINEDPNARLIRELQEEVARLRELLLAQGLS----ASALGGLKVDEGSPGGALPATSSPPAPVSPSHPPAHNGELEpSF 406
Cdd:pfam16183    1 AVINEDPNNKLIRELKDEVARLRDLLYAQGLGdiidTIAHPTKKRANTPAANASAATAAMAGASPSPSLSALSSRAA-SV 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  407 SPSAEPQI---GPEEAMERLQETEKIIAELNETWEEKLRKTEALRMEREALLAEMGVAVREDGGTVGVFSPKKTPHLVNL 483
Cdd:pfam16183   80 SSLHERIMftpGSEEAIERLKETEKIIAELNETWEEKLRKTEAIRMEREALLAEMGVAIREDGGTLGVFSPKKTPHLVNL 159
                          170
                   ....*....|....*...
gi 1952762066  484 NEDPLMSECLLYHIKDGI 501
Cdd:pfam16183  160 NEDPLMSECLLYYIKDGI 177
PLN03188 PLN03188
kinesin-12 family protein; Provisional
16-353 9.53e-72

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 261.41  E-value: 9.53e-72
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   16 IINPKQSKDA----PKSFTFDysywshtSAEDPQfASQQQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAGKSYTMMG--- 88
Cdd:PLN03188   117 MIVQKMSNDSltinGQTFTFD-------SIADPE-STQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGpan 188
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   89 -----RQEPGQQGIVPQLCEDLFSRVN----KNESAQLSYSVEVSYMEIYCERVRDLLNPKSRgSLRVREHPILGPYVQD 159
Cdd:PLN03188   189 glleeHLSGDQQGLTPRVFERLFARINeeqiKHADRQLKYQCRCSFLEIYNEQITDLLDPSQK-NLQIREDVKSGVYVEN 267
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  160 LSKLAVTSYADIADLMDCGNKARTVAATNMNETSSRSHAVFTIVFTQRCHDQLTGLDSEKVSKISLVDLAGSERADSSGA 239
Cdd:PLN03188   268 LTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGA 347
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  240 RGMRLKEGANINKSLTTLGKVISALADLqSKKRKSDFIPYRDSVLTWLLKENLGGNSRTAMIAALSPADINYEETLSTLR 319
Cdd:PLN03188   348 AGDRLKEAGNINRSLSQLGNLINILAEI-SQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLR 426
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|
gi 1952762066  320 YADRTKQIRCNAIINE----DPN--ARLIRELQEEVARLR 353
Cdd:PLN03188   427 FAQRAKAIKNKAVVNEvmqdDVNflREVIRQLRDELQRVK 466
FHA_KIF1C cd22728
forkhead associated (FHA) domain found in kinesin-like protein KIF1C; KIF1C is a new ...
477-578 9.41e-71

forkhead associated (FHA) domain found in kinesin-like protein KIF1C; KIF1C is a new kinesin-like protein involved in vesicle transport from the Golgi apparatus to the endoplasmic reticulum. It has a microtubule plus end-directed motility. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438780 [Multi-domain]  Cd Length: 102  Bit Score: 230.14  E-value: 9.41e-71
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  477 TPHLVNLNEDPLMSECLLYHIKDGITRVGQVDVDIKLTGQFIREQHCLFRSIPQPDGEVVVTLEPCEGAETYVNGRLVTE 556
Cdd:cd22728      1 TPHLVNLNEDPLMSECLLYHIKDGVTRVGQVDVDIKLSGQFIREQHCLFRSIPNPSGEVVVTLEPCEGAETYVNGKQVTE 80
                           90       100
                   ....*....|....*....|..
gi 1952762066  557 PLVLKSGNRIVMGKNHVFRFNH 578
Cdd:cd22728     81 PLVLKSGNRIVMGKNHVFRFNH 102
FHA pfam00498
FHA domain; The FHA (Forkhead-associated) domain is a phosphopeptide binding motif.
502-568 3.99e-06

FHA domain; The FHA (Forkhead-associated) domain is a phosphopeptide binding motif.


Pssm-ID: 459831 [Multi-domain]  Cd Length: 66  Bit Score: 45.26  E-value: 3.99e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  502 TRVGQ-VDVDIKLTGQFIREQHCLFRSipqpDGEVVVTLEPC-EGAETYVNGRLVT-EPLVLKSGNRIVM 568
Cdd:pfam00498    1 VTIGRsPDCDIVLDDPSVSRRHAEIRY----DGGGRFYLEDLgSTNGTFVNGQRLGpEPVRLKDGDVIRL 66
FHA COG1716
Forkhead associated (FHA) domain, binds pSer, pThr, pTyr [Signal transduction mechanisms];
495-576 1.49e-05

Forkhead associated (FHA) domain, binds pSer, pThr, pTyr [Signal transduction mechanisms];


Pssm-ID: 441322 [Multi-domain]  Cd Length: 96  Bit Score: 44.56  E-value: 1.49e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  495 YHIKDGITRVG-QVDVDIKLTGQFIREQHCLFRsipqPDGEVVVtLEPCEGA-ETYVNGRLVTEPLVLKSGNRIVMGKnH 572
Cdd:COG1716     16 FPLDGGPLTIGrAPDNDIVLDDPTVSRRHARIR----RDGGGWV-LEDLGSTnGTFVNGQRVTEPAPLRDGDVIRLGK-T 89

                   ....
gi 1952762066  573 VFRF 576
Cdd:COG1716     90 ELRF 93
FHA smart00240
Forkhead associated domain; Found in eukaryotic and prokaryotic proteins. Putative nuclear ...
508-554 1.48e-03

Forkhead associated domain; Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.


Pssm-ID: 214578 [Multi-domain]  Cd Length: 52  Bit Score: 37.54  E-value: 1.48e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*...
gi 1952762066   508 DVDIKLTGQFIREQHCLFRSipqpDGEVVVTLEPC-EGAETYVNGRLV 554
Cdd:smart00240    9 DCDIQLDGPSISRRHAVIVY----DGGGRFYLIDLgSTNGTFVNGKRI 52
 
Name Accession Description Interval E-value
KISc_KIF1A_KIF1B cd01365
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A ...
14-334 0e+00

Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.


Pssm-ID: 276816 [Multi-domain]  Cd Length: 361  Bit Score: 593.56  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   14 VTIINPKQS-------KDAPKSFTFDYSYWSHTSaEDPQFASQQQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAGKSYTM 86
Cdd:cd01365     32 TTLKNPKQAdknnkatREVPKSFSFDYSYWSHDS-EDPNYASQEQVYEDLGEELLQHAFEGYNVCLFAYGQTGSGKSYTM 110
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   87 MGRQEpgQQGIVPQLCEDLFSRVNKNESAQLSYSVEVSYMEIYCERVRDLLNPKS---RGSLRVREHPILGPYVQDLSKL 163
Cdd:cd01365    111 MGTQE--QPGIIPRLCEDLFSRIADTTNQNMSYSVEVSYMEIYNEKVRDLLNPKPkknKGNLKVREHPVLGPYVEDLSKL 188
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  164 AVTSYADIADLMDCGNKARTVAATNMNETSSRSHAVFTIVFTQRCHDQLTGLDSEKVSKISLVDLAGSERADSSGARGMR 243
Cdd:cd01365    189 AVTSYEDIQDLMDEGNKSRTVAATNMNDTSSRSHAVFTIVLTQKRHDAETNLTTEKVSKISLVDLAGSERASSTGATGDR 268
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  244 LKEGANINKSLTTLGKVISALADLQSKK--RKSDFIPYRDSVLTWLLKENLGGNSRTAMIAALSPADINYEETLSTLRYA 321
Cdd:cd01365    269 LKEGANINKSLTTLGKVISALADMSSGKskKKSSFIPYRDSVLTWLLKENLGGNSKTAMIAAISPADINYEETLSTLRYA 348
                          330
                   ....*....|...
gi 1952762066  322 DRTKQIRCNAIIN 334
Cdd:cd01365    349 DRAKKIVNRAVVN 361
Kinesin pfam00225
Kinesin motor domain;
12-327 8.99e-145

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 436.62  E-value: 8.99e-145
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   12 PPVTIINPKQSKDAPKSFTFDYSYWSHtsaedpqfASQQQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAGKSYTMMGRQE 91
Cdd:pfam00225   25 SETVESSHLTNKNRTKTFTFDKVFDPE--------ATQEDVYEETAKPLVESVLEGYNVTIFAYGQTGSGKTYTMEGSDE 96
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   92 pgQQGIVPQLCEDLFSRVNKNESaQLSYSVEVSYMEIYCERVRDLLNP--KSRGSLRVREHPILGPYVQDLSKLAVTSYA 169
Cdd:pfam00225   97 --QPGIIPRALEDLFDRIQKTKE-RSEFSVKVSYLEIYNEKIRDLLSPsnKNKRKLRIREDPKKGVYVKGLTEVEVSSAE 173
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  170 DIADLMDCGNKARTVAATNMNETSSRSHAVFTIVFTQRCHDQlTGLDSEKVSKISLVDLAGSERADSSG-ARGMRLKEGA 248
Cdd:pfam00225  174 EVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRST-GGEESVKTGKLNLVDLAGSERASKTGaAGGQRLKEAA 252
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1952762066  249 NINKSLTTLGKVISALADlqskkRKSDFIPYRDSVLTWLLKENLGGNSRTAMIAALSPADINYEETLSTLRYADRTKQI 327
Cdd:pfam00225  253 NINKSLSALGNVISALAD-----KKSKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSSNYEETLSTLRFASRAKNI 326
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
2-334 9.68e-145

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 437.00  E-value: 9.68e-145
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066     2 PSVWSACRAAPPVTIINPKQSKDAPKSFTFDYSYwshtsaedPQFASQQQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAG 81
Cdd:smart00129   21 PSVVPFPDKVGKTLTVRSPKNRQGEKKFTFDKVF--------DATASQEDVFEETAAPLVDSVLEGYNATIFAYGQTGSG 92
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066    82 KSYTMMGrqEPGQQGIVPQLCEDLFSRVNKNEsAQLSYSVEVSYMEIYCERVRDLLNPkSRGSLRVREHPILGPYVQDLS 161
Cdd:smart00129   93 KTYTMIG--TPDSPGIIPRALKDLFEKIDKRE-EGWQFSVKVSYLEIYNEKIRDLLNP-SSKKLEIREDEKGGVYVKGLT 168
                           170       180       190       200       210       220       230       240
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   162 KLAVTSYADIADLMDCGNKARTVAATNMNETSSRSHAVFTIVFTQRCHDqlTGLDSEKVSKISLVDLAGSERADSSGARG 241
Cdd:smart00129  169 EISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKN--SSSGSGKASKLNLVDLAGSERAKKTGAEG 246
                           250       260       270       280       290       300       310       320
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   242 MRLKEGANINKSLTTLGKVISALADLQskkrKSDFIPYRDSVLTWLLKENLGGNSRTAMIAALSPADINYEETLSTLRYA 321
Cdd:smart00129  247 DRLKEAGNINKSLSALGNVINALAQHS----KSRHIPYRDSKLTRLLQDSLGGNSKTLMIANVSPSSSNLEETLSTLRFA 322
                           330
                    ....*....|...
gi 1952762066   322 DRTKQIRCNAIIN 334
Cdd:smart00129  323 SRAKEIKNKPIVN 335
KISc cd00106
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity ...
14-325 2.12e-141

Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276812 [Multi-domain]  Cd Length: 326  Bit Score: 427.83  E-value: 2.12e-141
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   14 VTIINPKQSKDAPKSFTFDYSYWSHtsaedpqfASQQQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAGKSYTMMGRQePG 93
Cdd:cd00106     31 VVLDPPKNRVAPPKTFAFDAVFDST--------STQEEVYEGTAKPLVDSALEGYNGTIFAYGQTGSGKTYTMLGPD-PE 101
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   94 QQGIVPQLCEDLFSRVNKNESAQLSYSVEVSYMEIYCERVRDLLNPKSRGSLRVREHPILGPYVQDLSKLAVTSYADIAD 173
Cdd:cd00106    102 QRGIIPRALEDIFERIDKRKETKSSFSVSASYLEIYNEKIYDLLSPVPKKPLSLREDPKRGVYVKGLTEVEVGSLEDALE 181
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  174 LMDCGNKARTVAATNMNETSSRSHAVFTIVFTQRCHDQltGLDSEKVSKISLVDLAGSERADSSGARGMRLKEGANINKS 253
Cdd:cd00106    182 LLDAGNKNRTTASTNMNEHSSRSHAVFTIHVKQRNREK--SGESVTSSKLNLVDLAGSERAKKTGAEGDRLKEGGNINKS 259
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1952762066  254 LTTLGKVISALADlqskkRKSDFIPYRDSVLTWLLKENLGGNSRTAMIAALSPADINYEETLSTLRYADRTK 325
Cdd:cd00106    260 LSALGKVISALAD-----GQNKHIPYRDSKLTRLLQDSLGGNSKTIMIACISPSSENFEETLSTLRFASRAK 326
KISc_KIF3 cd01371
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or ...
14-327 6.84e-110

Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276822 [Multi-domain]  Cd Length: 334  Bit Score: 345.21  E-value: 6.84e-110
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   14 VTIINPKQ-SKDAPKSFTFDYSYwshtsaedPQFASQQQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAGKSYTMMG-RQE 91
Cdd:cd01371     34 VSVRNPKAtANEPPKTFTFDAVF--------DPNSKQLDVYDETARPLVDSVLEGYNGTIFAYGQTGTGKTYTMEGkRED 105
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   92 PGQQGIVPQLCEDLFSRVNKNESAQlSYSVEVSYMEIYCERVRDLLNPKSRGSLRVREHPILGPYVQDLSKLAVTSYADI 171
Cdd:cd01371    106 PELRGIIPNSFAHIFGHIARSQNNQ-QFLVRVSYLEIYNEEIRDLLGKDQTKRLELKERPDTGVYVKDLSMFVVKNADEM 184
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  172 ADLMDCGNKARTVAATNMNETSSRSHAVFTIvfTQRCHDQltGLDSE---KVSKISLVDLAGSERADSSGARGMRLKEGA 248
Cdd:cd01371    185 EHVMNLGNKNRSVGATNMNEDSSRSHAIFTI--TIECSEK--GEDGEnhiRVGKLNLVDLAGSERQSKTGATGERLKEAT 260
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1952762066  249 NINKSLTTLGKVISALADlqskkRKSDFIPYRDSVLTWLLKENLGGNSRTAMIAALSPADINYEETLSTLRYADRTKQI 327
Cdd:cd01371    261 KINLSLSALGNVISALVD-----GKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 334
KISc_KHC_KIF5 cd01369
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, ...
21-327 3.74e-102

Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276820 [Multi-domain]  Cd Length: 325  Bit Score: 324.28  E-value: 3.74e-102
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   21 QSKDAPKSFTFDYSYwshtsaedPQFASQQQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAGKSYTMMG-RQEPGQQGIVP 99
Cdd:cd01369     37 ATSETGKTFSFDRVF--------DPNTTQEDVYNFAAKPIVDDVLNGYNGTIFAYGQTSSGKTYTMEGkLGDPESMGIIP 108
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  100 QLCEDLFSRVNKNESaQLSYSVEVSYMEIYCERVRDLLNPkSRGSLRVREHPILGPYVQDLSKLAVTSYADIADLMDCGN 179
Cdd:cd01369    109 RIVQDIFETIYSMDE-NLEFHVKVSYFEIYMEKIRDLLDV-SKTNLSVHEDKNRGPYVKGATERFVSSPEEVLDVIDEGK 186
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  180 KARTVAATNMNETSSRSHAVFTIVFTQRchDQLTGldSEKVSKISLVDLAGSERADSSGARGMRLKEGANINKSLTTLGK 259
Cdd:cd01369    187 SNRHVAVTNMNEESSRSHSIFLINVKQE--NVETE--KKKSGKLYLVDLAGSEKVSKTGAEGAVLDEAKKINKSLSALGN 262
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1952762066  260 VISALADlqskkRKSDFIPYRDSVLTWLLKENLGGNSRTAMIAALSPADINYEETLSTLRYADRTKQI 327
Cdd:cd01369    263 VINALTD-----GKKTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGQRAKTI 325
KISc_KIF4 cd01372
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members ...
27-328 2.71e-101

Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276823 [Multi-domain]  Cd Length: 341  Bit Score: 322.74  E-value: 2.71e-101
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   27 KSFTFDYSYwshtsaeDPQfASQQQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAGKSYTMMG----RQEPGQQGIVPQLC 102
Cdd:cd01372     40 KSFTFDYVF-------DPS-TEQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTMGTaytaEEDEEQVGIIPRAI 111
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  103 EDLFSRVNKNESaQLSYSVEVSYMEIYCERVRDLLNP--KSRGSLRVREHPILGPYVQDLSKLAVTSYADIADLMDCGNK 180
Cdd:cd01372    112 QHIFKKIEKKKD-TFEFQLKVSFLEIYNEEIRDLLDPetDKKPTISIREDSKGGITIVGLTEVTVLSAEDMMSCLEQGSL 190
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  181 ARTVAATNMNETSSRSHAVFTIVFTQRCHDQLTGLDSEK------VSKISLVDLAGSERADSSGARGMRLKEGANINKSL 254
Cdd:cd01372    191 SRTTASTAMNSQSSRSHAIFTITLEQTKKNGPIAPMSADdknstfTSKFHFVDLAGSERLKRTGATGDRLKEGISINSGL 270
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1952762066  255 TTLGKVISALADlqsKKRKSDFIPYRDSVLTWLLKENLGGNSRTAMIAALSPADINYEETLSTLRYADRTKQIR 328
Cdd:cd01372    271 LALGNVISALGD---ESKKGAHVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341
KISc_C_terminal cd01366
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ...
24-329 2.77e-98

Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276817 [Multi-domain]  Cd Length: 329  Bit Score: 314.15  E-value: 2.77e-98
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   24 DAPKSFTFDYSYwshtsaeDPQfASQQQVYRDIgeEMLLH-AFEGYNVCIFAYGQTGAGKSYTMMGRQEpgQQGIVPQLC 102
Cdd:cd01366     42 AKQKEFSFDKVF-------DPE-ASQEDVFEEV--SPLVQsALDGYNVCIFAYGQTGSGKTYTMEGPPE--SPGIIPRAL 109
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  103 EDLFSRVNKNESAQLSYSVEVSYMEIYCERVRDLLNPKSRGSLR--VREHPILGP-YVQDLSKLAVTSYADIADLMDCGN 179
Cdd:cd01366    110 QELFNTIKELKEKGWSYTIKASMLEIYNETIRDLLAPGNAPQKKleIRHDSEKGDtTVTNLTEVKVSSPEEVRQLLKKAS 189
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  180 KARTVAATNMNETSSRSHAVFTIVFtqRCHDQLTGLDSekVSKISLVDLAGSERADSSGARGMRLKEGANINKSLTTLGK 259
Cdd:cd01366    190 KNRSTASTAMNEHSSRSHSVFILHI--SGRNLQTGEIS--VGKLNLVDLAGSERLNKSGATGDRLKETQAINKSLSALGD 265
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  260 VISALAdlqskkRKSDFIPYRDSVLTWLLKENLGGNSRTAMIAALSPADINYEETLSTLRYADRTKQIRC 329
Cdd:cd01366    266 VISALR------QKQSHIPYRNSKLTYLLQDSLGGNSKTLMFVNISPAESNLNETLNSLRFASKVNSCEL 329
KISc_KIP3_like cd01370
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast ...
20-327 1.96e-97

Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276821 [Multi-domain]  Cd Length: 345  Bit Score: 312.36  E-value: 1.96e-97
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   20 KQSKDapKSFTFDYSYwshtsaeDPQfASQQQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAGKSYTMMG-RQEPGqqgIV 98
Cdd:cd01370     56 RRNKE--LKYVFDRVF-------DET-STQEEVYEETTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGtPQEPG---LM 122
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   99 PQLCEDLFSRVNKNESAQlSYSVEVSYMEIYCERVRDLLNPKSrGSLRVREHPILGPYVQDLSKLAVTSYADIADLMDCG 178
Cdd:cd01370    123 VLTMKELFKRIESLKDEK-EFEVSMSYLEIYNETIRDLLNPSS-GPLELREDAQNGIVVAGLTEHSPKSAEEILELLMKG 200
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  179 NKARTVAATNMNETSSRSHAVFTIVFTQRchDQLTGLDSE-KVSKISLVDLAGSERADSSGARGMRLKEGANINKSLTTL 257
Cdd:cd01370    201 NRNRTQEPTDANATSSRSHAVLQITVRQQ--DKTASINQQvRQGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLAL 278
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  258 GKVISALADlqsKKRKSDFIPYRDSVLTWLLKENLGGNSRTAMIAALSPADINYEETLSTLRYADRTKQI 327
Cdd:cd01370    279 GNCINALAD---PGKKNKHIPYRDSKLTRLLKDSLGGNCRTVMIANISPSSSSYEETHNTLKYANRAKNI 345
KISc_CENP_E cd01374
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like ...
21-327 1.60e-95

Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276825 [Multi-domain]  Cd Length: 321  Bit Score: 306.57  E-value: 1.60e-95
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   21 QSKDAPKSFTFDYSYWSHTSAEdpqfasqqQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAGKSYTMMG-RQEPGqqgIVP 99
Cdd:cd01374     33 LVEPPSTSFTFDHVFGGDSTNR--------EVYELIAKPVVKSALEGYNGTIFAYGQTSSGKTFTMSGdEDEPG---IIP 101
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  100 QLCEDLFSRVNKNESAQlsYSVEVSYMEIYCERVRDLLNPKSRgSLRVREHPILGPYVQDLSKLAVTSYADIADLMDCGN 179
Cdd:cd01374    102 LAIRDIFSKIQDTPDRE--FLLRVSYLEIYNEKINDLLSPTSQ-NLKIRDDVEKGVYVAGLTEEIVSSPEHALSLIARGE 178
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  180 KARTVAATNMNETSSRSHAVFTIVFTQRCHDQLTGlDSEKVSKISLVDLAGSERADSSGARGMRLKEGANINKSLTTLGK 259
Cdd:cd01374    179 KNRHVGETDMNERSSRSHTIFRITIESSERGELEE-GTVRVSTLNLIDLAGSERAAQTGAAGVRRKEGSHINKSLLTLGT 257
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1952762066  260 VISALadlqSKKRKSDFIPYRDSVLTWLLKENLGGNSRTAMIAALSPADINYEETLSTLRYADRTKQI 327
Cdd:cd01374    258 VISKL----SEGKVGGHIPYRDSKLTRILQPSLGGNSRTAIICTITPAESHVEETLNTLKFASRAKKI 321
KISc_KLP2_like cd01373
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members ...
24-336 1.39e-94

Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276824 [Multi-domain]  Cd Length: 347  Bit Score: 304.82  E-value: 1.39e-94
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   24 DAPKSFTFDysywsHTSAEDpqfASQQQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAGKSYTMMGRQEP------GQQGI 97
Cdd:cd01373     38 KPPKTFTFD-----HVADSN---TNQESVFQSVGKPIVESCLSGYNGTIFAYGQTGSGKTYTMWGPSESdnesphGLRGV 109
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   98 VPQLCEDLFSRVNK---NESAQLSYSVEVSYMEIYCERVRDLLNPKSRGsLRVREHPILGPYVQDLSKLAVTSYADIADL 174
Cdd:cd01373    110 IPRIFEYLFSLIQRekeKAGEGKSFLCKCSFLEIYNEQIYDLLDPASRN-LKLREDIKKGVYVENLVEEYVTSAEDVYQV 188
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  175 MDCGNKARTVAATNMNETSSRSHAVFTIVFTQRCHDqlTGLDSEKVSKISLVDLAGSERADSSGARGMRLKEGANINKSL 254
Cdd:cd01373    189 LSKGWSNRKVAATSMNRESSRSHAVFTCTIESWEKK--ACFVNIRTSRLNLVDLAGSERQKDTHAEGVRLKEAGNINKSL 266
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  255 TTLGKVISALADLQSKKrkSDFIPYRDSVLTWLLKENLGGNSRTAMIAALSPADINYEETLSTLRYADRTKQIRCNAIIN 334
Cdd:cd01373    267 SCLGHVINALVDVAHGK--QRHVCYRDSKLTFLLRDSLGGNAKTAIIANVHPSSKCFGETLSTLRFAQRAKLIKNKAVVN 344

                   ..
gi 1952762066  335 ED 336
Cdd:cd01373    345 ED 346
KISc_BimC_Eg5 cd01364
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle ...
17-336 1.50e-85

Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276815 [Multi-domain]  Cd Length: 353  Bit Score: 280.75  E-value: 1.50e-85
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   17 INPKQSKDAPKSFTFDYSYwshtsaeDPQfASQQQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAGKSYTMMGR------- 89
Cdd:cd01364     39 TGGLADKSSTKTYTFDMVF-------GPE-AKQIDVYRSVVCPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDrspneey 110
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   90 --QEPGQQGIVPQLCEDLFSRVnknESAQLSYSVEVSYMEIYCERVRDLLNPKSRGSLRVREHPIL----GPYVQDLSKL 163
Cdd:cd01364    111 twELDPLAGIIPRTLHQLFEKL---EDNGTEYSVKVSYLEIYNEELFDLLSPSSDVSERLRMFDDPrnkrGVIIKGLEEI 187
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  164 AVTSYADIADLMDCGNKARTVAATNMNETSSRSHAVFTIVFtqrcHDQLTGLDSE---KVSKISLVDLAGSERADSSGAR 240
Cdd:cd01364    188 TVHNKDEVYQILEKGAAKRKTAATLMNAQSSRSHSVFSITI----HIKETTIDGEelvKIGKLNLVDLAGSENIGRSGAV 263
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  241 GMRLKEGANINKSLTTLGKVISALADlqskkrKSDFIPYRDSVLTWLLKENLGGNSRTAMIAALSPADINYEETLSTLRY 320
Cdd:cd01364    264 DKRAREAGNINQSLLTLGRVITALVE------RAPHVPYRESKLTRLLQDSLGGRTKTSIIATISPASVNLEETLSTLEY 337
                          330
                   ....*....|....*.
gi 1952762066  321 ADRTKQIRCNAIINED 336
Cdd:cd01364    338 AHRAKNIKNKPEVNQK 353
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
47-328 3.17e-81

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 276.23  E-value: 3.17e-81
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   47 ASQQQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAGKSYTMMGrqEPGQQGIVPQLCEDLFSRVNKNESAQlSYSVEVSYM 126
Cdd:COG5059     68 ATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSG--TEEEPGIIPLSLKELFSKLEDLSMTK-DFAVSISYL 144
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  127 EIYCERVRDLLNPKSRgSLRVREHPILGPYVQDLSKLAVTSYADIADLMDCGNKARTVAATNMNETSSRSHAVFTIVFTQ 206
Cdd:COG5059    145 EIYNEKIYDLLSPNEE-SLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELAS 223
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  207 RChdqlTGLDSEKVSKISLVDLAGSERADSSGARGMRLKEGANINKSLTTLGKVISALadlqSKKRKSDFIPYRDSVLTW 286
Cdd:COG5059    224 KN----KVSGTSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINAL----GDKKKSGHIPYRESKLTR 295
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|..
gi 1952762066  287 LLKENLGGNSRTAMIAALSPADINYEETLSTLRYADRTKQIR 328
Cdd:COG5059    296 LLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIK 337
Kinesin_assoc pfam16183
Kinesin-associated;
331-501 7.54e-76

Kinesin-associated;


Pssm-ID: 465047 [Multi-domain]  Cd Length: 177  Bit Score: 247.45  E-value: 7.54e-76
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  331 AIINEDPNARLIRELQEEVARLRELLLAQGLS----ASALGGLKVDEGSPGGALPATSSPPAPVSPSHPPAHNGELEpSF 406
Cdd:pfam16183    1 AVINEDPNNKLIRELKDEVARLRDLLYAQGLGdiidTIAHPTKKRANTPAANASAATAAMAGASPSPSLSALSSRAA-SV 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  407 SPSAEPQI---GPEEAMERLQETEKIIAELNETWEEKLRKTEALRMEREALLAEMGVAVREDGGTVGVFSPKKTPHLVNL 483
Cdd:pfam16183   80 SSLHERIMftpGSEEAIERLKETEKIIAELNETWEEKLRKTEAIRMEREALLAEMGVAIREDGGTLGVFSPKKTPHLVNL 159
                          170
                   ....*....|....*...
gi 1952762066  484 NEDPLMSECLLYHIKDGI 501
Cdd:pfam16183  160 NEDPLMSECLLYYIKDGI 177
PLN03188 PLN03188
kinesin-12 family protein; Provisional
16-353 9.53e-72

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 261.41  E-value: 9.53e-72
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   16 IINPKQSKDA----PKSFTFDysywshtSAEDPQfASQQQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAGKSYTMMG--- 88
Cdd:PLN03188   117 MIVQKMSNDSltinGQTFTFD-------SIADPE-STQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGpan 188
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   89 -----RQEPGQQGIVPQLCEDLFSRVN----KNESAQLSYSVEVSYMEIYCERVRDLLNPKSRgSLRVREHPILGPYVQD 159
Cdd:PLN03188   189 glleeHLSGDQQGLTPRVFERLFARINeeqiKHADRQLKYQCRCSFLEIYNEQITDLLDPSQK-NLQIREDVKSGVYVEN 267
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  160 LSKLAVTSYADIADLMDCGNKARTVAATNMNETSSRSHAVFTIVFTQRCHDQLTGLDSEKVSKISLVDLAGSERADSSGA 239
Cdd:PLN03188   268 LTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGA 347
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  240 RGMRLKEGANINKSLTTLGKVISALADLqSKKRKSDFIPYRDSVLTWLLKENLGGNSRTAMIAALSPADINYEETLSTLR 319
Cdd:PLN03188   348 AGDRLKEAGNINRSLSQLGNLINILAEI-SQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLR 426
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|
gi 1952762066  320 YADRTKQIRCNAIINE----DPN--ARLIRELQEEVARLR 353
Cdd:PLN03188   427 FAQRAKAIKNKAVVNEvmqdDVNflREVIRQLRDELQRVK 466
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
28-325 5.46e-71

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 239.89  E-value: 5.46e-71
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   28 SFTFDYSYwshtsAEDpqfASQQQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAGKSYTMMGR--QEPGQQGIVPQLCEDL 105
Cdd:cd01367     51 TFRFDYVF-----DES---SSNETVYRSTVKPLVPHIFEGGKATCFAYGQTGSGKTYTMGGDfsGQEESKGIYALAARDV 122
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  106 FSRVNKNESAqLSYSVEVSYMEIYCERVRDLLNPKSRgsLRVREHPILGPYVQDLSKLAVTSYADIADLMDCGNKARTVA 185
Cdd:cd01367    123 FRLLNKLPYK-DNLGVTVSFFEIYGGKVFDLLNRKKR--VRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTG 199
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  186 ATNMNETSSRSHAVFTIVFTQRCHDQLTGldsekvsKISLVDLAGSER-ADSSGARGMRLKEGANINKSLTTLGKVISAL 264
Cdd:cd01367    200 QTSANSQSSRSHAILQIILRDRGTNKLHG-------KLSFVDLAGSERgADTSSADRQTRMEGAEINKSLLALKECIRAL 272
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1952762066  265 AdlQSKKRksdfIPYRDSVLTWLLKENL-GGNSRTAMIAALSPADINYEETLSTLRYADRTK 325
Cdd:cd01367    273 G--QNKAH----IPFRGSKLTQVLKDSFiGENSKTCMIATISPGASSCEHTLNTLRYADRVK 328
FHA_KIF1C cd22728
forkhead associated (FHA) domain found in kinesin-like protein KIF1C; KIF1C is a new ...
477-578 9.41e-71

forkhead associated (FHA) domain found in kinesin-like protein KIF1C; KIF1C is a new kinesin-like protein involved in vesicle transport from the Golgi apparatus to the endoplasmic reticulum. It has a microtubule plus end-directed motility. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438780 [Multi-domain]  Cd Length: 102  Bit Score: 230.14  E-value: 9.41e-71
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  477 TPHLVNLNEDPLMSECLLYHIKDGITRVGQVDVDIKLTGQFIREQHCLFRSIPQPDGEVVVTLEPCEGAETYVNGRLVTE 556
Cdd:cd22728      1 TPHLVNLNEDPLMSECLLYHIKDGVTRVGQVDVDIKLSGQFIREQHCLFRSIPNPSGEVVVTLEPCEGAETYVNGKQVTE 80
                           90       100
                   ....*....|....*....|..
gi 1952762066  557 PLVLKSGNRIVMGKNHVFRFNH 578
Cdd:cd22728     81 PLVLKSGNRIVMGKNHVFRFNH 102
KISc_KIF23_like cd01368
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members ...
18-325 7.81e-68

Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276819 [Multi-domain]  Cd Length: 345  Bit Score: 231.51  E-value: 7.81e-68
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   18 NPKQSKDAPKSFTFDYSYWSHTSaedpqfasQQQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAGKSYTMMGrqEPGQQGI 97
Cdd:cd01368     46 SERNGGQKETKFSFSKVFGPNTT--------QKEFFQGTALPLVQDLLHGKNGLLFTYGVTNSGKTYTMQG--SPGDGGI 115
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   98 VPQLCEDLFSRVNknesaqlSYSVEVSYMEIYCERVRDLLNP------KSRGSLRVREHPILGPYVQDLSKLAVTSYADI 171
Cdd:cd01368    116 LPRSLDVIFNSIG-------GYSVFVSYIEIYNEYIYDLLEPspssptKKRQSLRLREDHNGNMYVAGLTEIEVKSTEEA 188
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  172 ADLMDCGNKARTVAATNMNETSSRSHAVFTIVFTQrCHDQLTGL-----DSEKVSKISLVDLAGSERADSSGARGMRLKE 246
Cdd:cd01368    189 RKVLKRGQKNRSVAGTKLNRESSRSHSVFTIKLVQ-APGDSDGDvdqdkDQITVSQLSLVDLAGSERTSRTQNTGERLKE 267
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1952762066  247 GANINKSLTTLGKVISALADLQsKKRKSDFIPYRDSVLTWLLKENLGGNSRTAMIAALSPADINYEETLSTLRYADRTK 325
Cdd:cd01368    268 AGNINTSLMTLGTCIEVLRENQ-LQGTNKMVPFRDSKLTHLFQNYFDGEGKASMIVNVNPCASDYDETLHVMKFSAIAQ 345
KISc_KIF9_like cd01375
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play ...
47-325 1.31e-64

Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276826 [Multi-domain]  Cd Length: 334  Bit Score: 222.07  E-value: 1.31e-64
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   47 ASQQQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAGKSYTMMGRQEP-GQQGIVPQLCEDLFSRVNKNESAqlSYSVEVSY 125
Cdd:cd01375     59 ASQELVYETVAKDVVSSALAGYNGTIFAYGQTGAGKTFTMTGGTENyKHRGIIPRALQQVFRMIEERPTK--AYTVHVSY 136
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  126 MEIYCERVRDLLNPK-----SRGSLRVREHPILGPYVQDLSKLAVTSYADIADLMDCGNKARTVAATNMNETSSRSHAVF 200
Cdd:cd01375    137 LEIYNEQLYDLLSTLpyvgpSVTPMTILEDSPQNIFIKGLSLHLTSQEEEALSLLFLGETNRIIASHTMNKNSSRSHCIF 216
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  201 TIVFTQRCHDqltgLDSEKV--SKISLVDLAGSERADSSGARGMRLKEGANINKSLTTLGKVISALADlqskkRKSDFIP 278
Cdd:cd01375    217 TIHLEAHSRT----LSSEKYitSKLNLVDLAGSERLSKTGVEGQVLKEATYINKSLSFLEQAIIALSD-----KDRTHVP 287
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*..
gi 1952762066  279 YRDSVLTWLLKENLGGNSRTAMIAALSPADINYEETLSTLRYADRTK 325
Cdd:cd01375    288 FRQSKLTHVLRDSLGGNCNTVMVANIYGEAAQLEETLSTLRFASRVK 334
KISc_KID_like cd01376
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. ...
14-325 2.51e-63

Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276827 [Multi-domain]  Cd Length: 319  Bit Score: 217.76  E-value: 2.51e-63
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   14 VTIINPKQSKDaPKSFTFDYSYWSHtsaedpqfASQQQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAGKSYTMMGrqEPG 93
Cdd:cd01376     32 VELADPRNHGE-TLKYQFDAFYGEE--------STQEDIYAREVQPIVPHLLEGQNATVFAYGSTGAGKTFTMLG--SPE 100
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   94 QQGIVPQLCEDLFSRvnkNESAQLSYSVEVSYMEIYCERVRDLLNPKSrGSLRVRE---HPILgpyVQDLSKLAVTSYAD 170
Cdd:cd01376    101 QPGLMPLTVMDLLQM---TRKEAWALSFTMSYLEIYQEKILDLLEPAS-KELVIREdkdGNIL---IPGLSSKPIKSMAE 173
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  171 IADLMDCGNKARTVAATNMNETSSRSHAVFTIVFTQRchdQLTGLDSEKVSKISLVDLAGSERADSSGARGMRLKEGANI 250
Cdd:cd01376    174 FEEAFLPASKNRTVAATRLNDNSSRSHAVLLIKVDQR---ERLAPFRQRTGKLNLIDLAGSEDNRRTGNEGIRLKESGAI 250
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1952762066  251 NKSLTTLGKVISALadLQSKKRksdfIPYRDSVLTWLLKENLGGNSRTAMIAALSPADINYEETLSTLRYADRTK 325
Cdd:cd01376    251 NSSLFVLSKVVNAL--NKNLPR----IPYRDSKLTRLLQDSLGGGSRCIMVANIAPERTFYQDTLSTLNFAARSR 319
FHA_KIF1A cd22726
forkhead associated (FHA) domain found in kinesin-like protein KIF1A; KIF1A, also called ...
477-587 4.13e-63

forkhead associated (FHA) domain found in kinesin-like protein KIF1A; KIF1A, also called axonal transporter of synaptic vesicles (ATSV), microtubule-based motor KIF1A, Unc-104- and KIF1A-related protein, or Unc-104, is an axonal transporter of synaptic vesicles, which is mutated in hereditary sensory and autonomic neuropathy type 2. It is also required for neuronal dense core vesicle (DCV) transport to dendritic spines and axons. The calcium-dependent interaction with CALM1 increases vesicle motility, and interaction with the scaffolding proteins PPFIA2 and TANC2 recruits DCVs to synaptic sites. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438778 [Multi-domain]  Cd Length: 115  Bit Score: 209.40  E-value: 4.13e-63
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  477 TPHLVNLNEDPLMSECLLYHIKDGITRVGQVDV----DIKLTGQFIREQHCLFRSIPQPDGEVVVTLEPCEGAETYVNGR 552
Cdd:cd22726      1 TPHLVNLNEDPLMSECLLYYIKDGITRVGREDAerrqDIVLSGHFIKEEHCIFRSDTRSGGEAVVTLEPCEGADTYVNGK 80
                           90       100       110
                   ....*....|....*....|....*....|....*
gi 1952762066  553 LVTEPLVLKSGNRIVMGKNHVFRFNHPEQARLERE 587
Cdd:cd22726     81 KVTEPSILRSGNRIIMGKSHVFRFNHPEQARQERE 115
FHA_KIF1B cd22727
forkhead associated (FHA) domain found in kinesin-like protein KIF1B; KIF1B, also called Klp, ...
476-581 6.80e-60

forkhead associated (FHA) domain found in kinesin-like protein KIF1B; KIF1B, also called Klp, is a motor for anterograde transport of mitochondria. It has a microtubule plus end-directed motility. Isoform 1 mediates the transport of synaptic vesicles in neuronal cells, while isoform 2 is required for induction of neuronal apoptosis. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438779 [Multi-domain]  Cd Length: 110  Bit Score: 200.26  E-value: 6.80e-60
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  476 KTPHLVNLNEDPLMSECLLYHIKDGITRVGQVDV----DIKLTGQFIREQHCLFRSIPQPDGEVVVTLEPCEGAETYVNG 551
Cdd:cd22727      1 KTPHLVNLNEDPLMSECLLYYIKDGITRVGQADAerrqDIVLSGAHIKEEHCIFRSERNNNGEVIVTLEPCERSETYVNG 80
                           90       100       110
                   ....*....|....*....|....*....|
gi 1952762066  552 RLVTEPLVLKSGNRIVMGKNHVFRFNHPEQ 581
Cdd:cd22727     81 KRVVQPVQLRSGNRIIMGKNHVFRFNHPEQ 110
FHA_KIF1 cd22705
forkhead associated (FHA) domain found in the kinesin-like protein KIF1 family; The KIF1 ...
477-578 1.71e-58

forkhead associated (FHA) domain found in the kinesin-like protein KIF1 family; The KIF1 family includes KIF1A, KIF1B, and KIF1C. KIF1A, also called axonal transporter of synaptic vesicles (ATSV), microtubule-based motor KIF1A, Unc-104- and KIF1A-related protein, or Unc-104, is an axonal transporter of synaptic vesicles, which is mutated in hereditary sensory and autonomic neuropathy type 2. It is also required for neuronal dense core vesicle (DCV) transport to dendritic spines and axons. The calcium-dependent interaction with CALM1 increases vesicle motility, and interaction with the scaffolding proteins PPFIA2 and TANC2 recruits DCVs to synaptic sites. KIF1B, also called Klp, is a motor for anterograde transport of mitochondria. It has a microtubule plus end-directed motility. Isoform 1 mediates the transport of synaptic vesicles in neuronal cells, while isoform 2 is required for induction of neuronal apoptosis. KIF1C is a new kinesin-like protein involved in vesicle transport from the Golgi apparatus to the endoplasmic reticulum. It has a microtubule plus end-directed motility. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438757 [Multi-domain]  Cd Length: 101  Bit Score: 195.53  E-value: 1.71e-58
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  477 TPHLVNLNEDPLMSECLLYHIKDGITRVGQVD----VDIKLTGQFIREQHCLFRSIpqpdgEVVVTLEPCEGAETYVNGR 552
Cdd:cd22705      1 TPHLVNLNEDPLMSECLLYYIKPGITRVGRADadvpQDIQLSGTHILEEHCTFENE-----DGVVTLEPCEGALTYVNGK 75
                           90       100
                   ....*....|....*....|....*.
gi 1952762066  553 LVTEPLVLKSGNRIVMGKNHVFRFNH 578
Cdd:cd22705     76 RVTEPTRLKTGSRVILGKNHVFRFNH 101
FHA_KIF14 cd22707
forkhead associated (FHA) domain found in kinesin-like protein KIF14 and similar proteins; ...
476-579 2.12e-35

forkhead associated (FHA) domain found in kinesin-like protein KIF14 and similar proteins; KIF14 is a microtubule motor protein that binds to microtubules with high affinity through each tubulin heterodimer and has an ATPase activity. It plays a role in many processes like cell division, cytokinesis and in cell proliferation and apoptosis. KIF14 is a potential oncogene and is involved in the metastasis of various cancers. Mutations of KIF14 cause primary microcephaly by impairing cytokinesis. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438759 [Multi-domain]  Cd Length: 108  Bit Score: 130.08  E-value: 2.12e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  476 KTPHLVNLNEDPLMSECLLYHIKDGITRVGQ----VDVDIKLTGQFIREQHCLFRSIpqpdgEVVVTLEPCEGAETYVNG 551
Cdd:cd22707      6 KLPNLVNLNEDPQLSEMLLYMLKEGQTRVGRskasSSHDIQLSGALIADDHCTIENN-----GGKVTIIPVGDAETYVNG 80
                           90       100
                   ....*....|....*....|....*...
gi 1952762066  552 RLVTEPLVLKSGNRIVMGKNHVFRFNHP 579
Cdd:cd22707     81 ELISEPTVLHHGDRVILGGDHYFRFNHP 108
Motor_domain cd01363
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ...
47-263 6.76e-32

Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.


Pssm-ID: 276814 [Multi-domain]  Cd Length: 170  Bit Score: 122.45  E-value: 6.76e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   47 ASQQQVYRDIGEeMLLHAFEGYNV-CIFAYGQTGAGKSYTMMgrqepgqqGIVPQLCEDLFSRVNKNESAQLSYsvevsy 125
Cdd:cd01363     30 ESQPHVFAIADP-AYQSMLDGYNNqSIFAYGESGAGKTETMK--------GVIPYLASVAFNGINKGETEGWVY------ 94
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  126 meiycervrdllnpksrgslrvrehpilgpyvqdLSKLAVTSYADIADLMDCGNKARTvAATNMNETSSRSHAVFTIVft 205
Cdd:cd01363     95 ----------------------------------LTEITVTLEDQILQANPILEAFGN-AKTTRNENSSRFGKFIEIL-- 137
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1952762066  206 qrchdqltgldsekvskislVDLAGSERadssgargmrlkeganINKSLTTLGKVISA 263
Cdd:cd01363    138 --------------------LDIAGFEI----------------INESLNTLMNVLRA 159
FHA_KIF28P cd22709
forkhead associated (FHA) domain found in kinesin-like protein KIF28P and similar proteins; ...
478-579 4.39e-31

forkhead associated (FHA) domain found in kinesin-like protein KIF28P and similar proteins; KIF28P, also called kinesin-like protein 6 (KLP6), is a microtubule-dependent motor protein required for mitochondrion morphology and transport of mitochondria in neuronal cells. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438761 [Multi-domain]  Cd Length: 102  Bit Score: 117.70  E-value: 4.39e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  478 PHLVNLNEDPLMSECLLYHIKDGITRVGQVD----VDIKLTGQFIREQHCLFRSIpqpDGEvvVTLEPC-EGAETYVNGR 552
Cdd:cd22709      1 PHLLNLNEDPQLSGVIVHFLQEGETTIGRADaepePDIVLSGLSIQKQHAVITNT---DGK--VTIEPVsPGAKVIVNGV 75
                           90       100
                   ....*....|....*....|....*..
gi 1952762066  553 LVTEPLVLKSGNRIVMGKNHVFRFNHP 579
Cdd:cd22709     76 PVTGETELHHLDRVILGSNHLYVFVGP 102
FHA_KIF16 cd22708
forkhead associated (FHA) domain found in the kinesin-like protein KIF16 family; The KIF16 ...
476-579 7.20e-31

forkhead associated (FHA) domain found in the kinesin-like protein KIF16 family; The KIF16 family includes StARD9/KIF16A and KIF16B. StARD9, also called START domain-containing protein 9, or kinesin-like protein KIF16A, is a microtubule-dependent motor protein required for spindle pole assembly during mitosis. It is required to stabilize the pericentriolar material (PCM). KIF16B, also called sorting nexin-23, is a plus end-directed microtubule-dependent motor protein involved in endosome transport and receptor recycling and degradation. It regulates the plus end motility of early endosomes and the balance between recycling and degradation of receptors such as EGF receptor (EGFR) and FGF receptor (FGFR). It regulates the Golgi to endosome transport of FGFR-containing vesicles during early development, a key process for developing basement membrane and epiblast and primitive endoderm lineages during early postimplantation development. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438760 [Multi-domain]  Cd Length: 109  Bit Score: 117.37  E-value: 7.20e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  476 KTPHLVNLNEDPLMSECLLYHIKDGITRVGQVDV----DIKLTGQFIREQHCLFRSIpqpDGevVVTLEPCEGAETYVNG 551
Cdd:cd22708      7 ELPHLIGIDDDLLSTGVVLYHLKEGKTRIGREDApqeqDIVLDGEDIEAEHCIIENV---GG--VVTLHPLPGALCAVNG 81
                           90       100
                   ....*....|....*....|....*...
gi 1952762066  552 RLVTEPLVLKSGNRIVMGKNHVFRFNHP 579
Cdd:cd22708     82 QVITQPTRLTQGDVILLGKTNMFRFNHP 109
FHA_KIF16A_STARD9 cd22731
forkhead associated (FHA) domain found in StAR-related lipid transfer protein 9 (StARD9); ...
470-588 4.97e-29

forkhead associated (FHA) domain found in StAR-related lipid transfer protein 9 (StARD9); StARD9, also called START domain-containing protein 9, or kinesin-like protein KIF16A, is a microtubule-dependent motor protein required for spindle pole assembly during mitosis. It is required to stabilize the pericentriolar material (PCM). The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438783 [Multi-domain]  Cd Length: 119  Bit Score: 112.56  E-value: 4.97e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  470 GVFSPKKTPHLVNLNEDPLMSECLLYHIKDGITRVGQVDV----DIKLTGQFIREQHCLfrsIPQPDGevVVTLEPCEGA 545
Cdd:cd22731      1 GVTIDSNLPHLIAMDDDILSTGVVLYHLREGTTKIGRSDSeqeqDIVLQGPWIERDHCM---IHNECG--VVTLRPAQGA 75
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1952762066  546 ETYVNGRLVTEPLVLKSGNRIVMGKNHVFRFNHPEQARLERER 588
Cdd:cd22731     76 QCTVNGREVTESCRLSQGAVIVLGKTHKFRFNHPAEAAILRQR 118
FHA_KIF13 cd22706
forkhead associated (FHA) domain found in the kinesin-like protein KIF13 family; The KIF13 ...
480-579 2.70e-25

forkhead associated (FHA) domain found in the kinesin-like protein KIF13 family; The KIF13 family includes KIF13A and KIF13B. KIF13A, also called kinesin-like protein RBKIN, is a plus end-directed microtubule-dependent motor protein involved in intracellular transport and in regulating various processes such as mannose-6-phosphate receptor (M6PR) transport to the plasma membrane, endosomal sorting during melanosome biogenesis, and cytokinesis. It mediates the transport of M6PR-containing vesicles from trans-Golgi network to the plasma membrane via direct interaction with the AP-1 complex. During melanosome maturation, KIF13A is required for delivering melanogenic enzymes from recycling endosomes to nascent melanosomes by creating peripheral recycling endosomal subdomains in melanocytes. It is also required for the abscission step in cytokinesis: it mediates translocation of ZFYVE26, and possibly TTC19, to the midbody during cytokinesis. KIF13B, also called kinesin-like protein GAKIN, is a novel kinesin-like protein that associates with the human homolog of the Drosophila discs large tumor suppressor in T lymphocytes. It is involved in reorganization of the cortical cytoskeleton. It regulates axon formation by promoting the formation of extra axons. KIF13B may be functionally important for the intracellular trafficking of membrane-associated guanylate kinase homologs (MAGUKs) and associated protein complexes. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438758 [Multi-domain]  Cd Length: 101  Bit Score: 101.22  E-value: 2.70e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  480 LVNLNEDPLMSECLLYHIKDgITRVGQVDV----DIKLTGQFIREQHCLfrsIPQPDGEVVVTlePCEGAETYVNGRLVT 555
Cdd:cd22706      4 LVNLNADPSLNELLVYYLKE-HTLIGRSDAptqqDIQLSGLGIQPEHCI---ITIENEDVYLT--PLEGARTCVNGSIVT 77
                           90       100
                   ....*....|....*....|....
gi 1952762066  556 EPLVLKSGNRIVMGKNHVFRFNHP 579
Cdd:cd22706     78 EKTQLRHGDRILWGNNHFFRLNCP 101
FHA_KIF16B cd22732
forkhead associated (FHA) domain found in kinesin-like protein KIF16B; KIF16B, also called ...
470-587 4.49e-21

forkhead associated (FHA) domain found in kinesin-like protein KIF16B; KIF16B, also called sorting nexin-23, is a plus end-directed microtubule-dependent motor protein involved in endosome transport and receptor recycling and degradation. It regulates the plus end motility of early endosomes and the balance between recycling and degradation of receptors such as EGF receptor (EGFR) and FGF receptor (FGFR). It regulates the Golgi to endosome transport of FGFR-containing vesicles during early development, a key process for developing basement membrane and epiblast and primitive endoderm lineages during early postimplantation development. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438784 [Multi-domain]  Cd Length: 117  Bit Score: 89.61  E-value: 4.49e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  470 GVFSPKKTPHLVNLNEDPLMSECLLYHIKDGITRVGQVDV----DIKLTGQFIREQHCLFRSIPQpdgevVVTLEPCEGA 545
Cdd:cd22732      1 GVVLDSELPHLIGIDDDLLSTGIILYHLKEGRTYVGRDDAtteqDIVLHGLDLESEHCIFENLNG-----TVTLIPLNGA 75
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1952762066  546 ETYVNGRLVTEPLVLKSGNRIVMGKNHVFRFNHPEQARLERE 587
Cdd:cd22732     76 QCSVNGVQITEATQLNQGAVILLGRTNMFRFNHPKEAAKLRE 117
FHA_KIF13A cd22729
forkhead associated (FHA) domain found in kinesin-like protein KIF13A; KIF13A, also called ...
480-586 1.12e-19

forkhead associated (FHA) domain found in kinesin-like protein KIF13A; KIF13A, also called kinesin-like protein RBKIN, is a plus end-directed microtubule-dependent motor protein involved in intracellular transport and in regulating various processes such as mannose-6-phosphate receptor (M6PR) transport to the plasma membrane, endosomal sorting during melanosome biogenesis, and cytokinesis. It mediates the transport of M6PR-containing vesicles from trans-Golgi network to the plasma membrane via direct interaction with the AP-1 complex. During melanosome maturation, KIF13A is required for delivering melanogenic enzymes from recycling endosomes to nascent melanosomes by creating peripheral recycling endosomal subdomains in melanocytes. It is also required for the abscission step in cytokinesis: it mediates translocation of ZFYVE26, and possibly TTC19, to the midbody during cytokinesis. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438781 [Multi-domain]  Cd Length: 109  Bit Score: 85.33  E-value: 1.12e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  480 LVNLNEDPLMSECLLYHIKDGiTRVG-QVDVDIKLTGQFIREQHCLFRSipQPDGEVVVTlePCEGAETYVNGRLVTEPL 558
Cdd:cd22729      4 LVNLNADPALNELLVYYLKDH-TRVGaDTSQDIQLFGIGIQPEHCVIDI--AADGDVTLT--PKENARTCVNGTLVCSVT 78
                           90       100
                   ....*....|....*....|....*...
gi 1952762066  559 VLKSGNRIVMGKNHVFRFNHPEQARLER 586
Cdd:cd22729     79 QLWHGDRILWGNNHFFRINLPKRKRRDW 106
FHA_KIF13B cd22730
forkhead associated (FHA) domain found in kinesin-like protein KIF13B; KIF13B, also called ...
480-579 2.74e-19

forkhead associated (FHA) domain found in kinesin-like protein KIF13B; KIF13B, also called kinesin-like protein GAKIN, is a novel kinesin-like protein that associates with the human homolog of the Drosophila discs large tumor suppressor in T lymphocytes. It is involved in reorganization of the cortical cytoskeleton. It regulates axon formation by promoting the formation of extra axons. KIF13B may be functionally important for the intracellular trafficking of membrane-associated guanylate kinase homologs (MAGUKs) and associated protein complexes. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438782 [Multi-domain]  Cd Length: 99  Bit Score: 83.81  E-value: 2.74e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  480 LVNLNEDPLMSECLLYHIKDGiTRVGQVDV-DIKLTGQFIREQHCLFRSipQPDGEVVVTlePCEGAETYVNGRLVTEPL 558
Cdd:cd22730      4 LVNLNADPALNELLVYYLKEH-TLIGSADSqDIQLCGMGILPEHCIIDI--TPEGQVMLT--PQKNTRTFVNGSAVTSPI 78
                           90       100
                   ....*....|....*....|.
gi 1952762066  559 VLKSGNRIVMGKNHVFRFNHP 579
Cdd:cd22730     79 QLHHGDRILWGNNHFFRINLP 99
FHA_PHLB1 cd22713
forkhead associated (FHA) domain found in pleckstrin homology-like domain family B member 1 ...
478-582 6.75e-15

forkhead associated (FHA) domain found in pleckstrin homology-like domain family B member 1 (PHLDB1) and similar proteins; PHLDB1, also called protein LL5-alpha (LL5A), acts as an insulin-responsive protein that enhances Akt activation. PHLDB1 contains a pleckstrin homology domain, which binds phosphatidylinositol PI(3,4)P(2), PI(3,5)P(2), and PI(3,4,5)P(3), as well as a Forkhead-associated (FHA) domain and coiled coil regions. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438765  Cd Length: 120  Bit Score: 71.97  E-value: 6.75e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  478 PHLVNLNEDPLMSECLLYHIKDGITRVGQVDVD-IKLTGQFIREQHCLFRSIpqpDGEVvvTLEPCEGAETyVNGRLVTE 556
Cdd:cd22713     17 PHLVSLGSGRLSTAVTLLPLPEGKTTIGTAASDiISLQGPGVEPEHCYIENI---NGTV--TLYPCGNLCS-VDGLPITE 90
                           90       100
                   ....*....|....*....|....*.
gi 1952762066  557 PLVLKSGNRIVMGKNHVFRFNHPEQA 582
Cdd:cd22713     91 PTRLTQGCMICLGRSNYFRFNHPAEA 116
FHA_AFDN cd22711
forkhead associated (FHA) domain found in afadin and similar proteins; Afadin, also called ...
478-579 3.70e-13

forkhead associated (FHA) domain found in afadin and similar proteins; Afadin, also called ALL1-fused gene from chromosome 6 protein, protein AF-6, Afadin adherens junction formation factor, or MLLT4, is a nectin- and actin-filament-binding protein that connects nectin to the actin cytoskeleton. It is essential for the organization of adherens junctions. It may play a key role in the organization of epithelial structures of the embryonic ectoderm. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438763 [Multi-domain]  Cd Length: 106  Bit Score: 66.58  E-value: 3.70e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  478 PHLVNLNEDPLMSECL-LYHIKDGITRVG------QVDVDIKLTGQFIREQHCLFRSIpqpDGEVVVTlePCEG-AETYV 549
Cdd:cd22711      2 PYLLELSPDGSDRDKPrRHRLQPNVTEVGserspaNSGQFIQLFGPDILPRHCVITHM---EGVVTVT--PASQdAETYV 76
                           90       100       110
                   ....*....|....*....|....*....|
gi 1952762066  550 NGRLVTEPLVLKSGNRIVMGKNHVFRFNHP 579
Cdd:cd22711     77 NGQRIYETTMLQHGMVVQFGRSHTFRFCDP 106
Microtub_bd pfam16796
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding ...
17-137 1.04e-11

Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding site.


Pssm-ID: 465274 [Multi-domain]  Cd Length: 144  Bit Score: 63.78  E-value: 1.04e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   17 INPKQSKDAPKSFTFDYSYwshtsaedPQFASQQQVYRDIgeEMLLH-AFEGYNVCIFAYGQTGAGKSYTMmgrqepgqq 95
Cdd:pfam16796   45 SSDGKIGSKNKSFSFDRVF--------PPESEQEDVFQEI--SQLVQsCLDGYNVCIFAYGQTGSGSNDGM--------- 105
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1952762066   96 giVPQLCEDLFSRVNKNEsAQLSYSVEVSYMEIYCERVRDLL 137
Cdd:pfam16796  106 --IPRAREQIFRFISSLK-KGWKYTIELQFVEIYNESSQDLL 144
FHA_RADIL-like cd22712
forkhead associated (FHA) domain found in the Ras-associating and dilute domain-containing ...
477-579 8.37e-10

forkhead associated (FHA) domain found in the Ras-associating and dilute domain-containing protein (Radil)-like family; The Radil-like family includes Radil and Ras-interacting protein 1 (Rain). Radil acts as an important small GTPase Rap1 effector required for cell spreading and migration. It regulates neutrophil adhesion and motility by linking Rap1 to beta2-integrin activation. Rain, also called Rasip1, is an endothelial-specific Ras-interacting protein required for the proper formation of vascular structures that develop via both vasculogenesis and angiogenesis. It acts as a critical and vascular-specific regulator of GTPase signaling, cell architecture, and adhesion, which is essential for endothelial cell morphogenesis and blood vessel tubulogenesis. Rain interacts with Ras in a GTP-dependent manner and may serve as an effector for endomembrane-associated Ras. Both Radil and Rain contain an FHA domain. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438764 [Multi-domain]  Cd Length: 120  Bit Score: 57.31  E-value: 8.37e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  477 TPHLVNLNEDPLMSECLLYHIKDGITRVGQVD-----VDIKLTGQFIREQHCLFRSIPQPDGEV----------VVTLEP 541
Cdd:cd22712      3 YPYLLTLRGFSPKQDLLVYPLLEQVILVGSRTegarkVDISLRAPDILPQHCWIRRKPEPLSDDedsdkesadyRVVLSP 82
                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1952762066  542 CEGAETYVNGRLVTEPLVLKSGNRIVMGKNHVFRFNHP 579
Cdd:cd22712     83 LRGAHVTVNGVPVLSETELHPGDLLGIGEHYLFLFKDP 120
FHA cd00060
forkhead associated (FHA) domain superfamily; Forkhead-associated (FHA) domains are small ...
479-576 5.06e-09

forkhead associated (FHA) domain superfamily; Forkhead-associated (FHA) domains are small phosphopeptide recognition modules mostly found in eubacteria and eukaryotes. It is about 95-120 residues long that fold into an 11-stranded beta-sandwich. FHA domains can mediate the recognition of phosphorylated and non-phosphorylated substrates, as well as protein oligomerization. They specifically recognize threonine phosphorylation (pThr) accompanying activation of protein serine/threonine kinases. FHA domains show diverse ligand specificity. They may recognize the pTXXD motif, the pTXXI/L motif, and TQ clusters (singly and multiply phosphorylated). In eukaryotes, FHA superfamily members include forkhead-type transcription factors, as well as other signaling proteins, such as many regulatory proteins, kinases, phosphatases, motor proteins called kinesins, and metabolic enzymes. Many of them localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. FHA domains play important roles in human diseases, particularly in relation to DNA damage responses and cancers. In bacteria, FHA domain-containing proteins may participate in injection of viral proteins into host cells, transmembrane transporters, and cell division. FHA domain-containing proteins rarely include more than one copy of the domain. The only exception in eukaryotes is the checkpoint kinase Rad53 from Saccharomyces cerevisiae, which harbors two FHA domains (FHA1 and FHA2) flanking a central kinase domain. The two FHA domains recognize different phosphorylated targets and function independently from one another. In contrast, Mycobacterium tuberculosis ABC transporter Rv1747 contains two FHA domains but only one of them is essential for protein function.


Pssm-ID: 438714 [Multi-domain]  Cd Length: 92  Bit Score: 54.20  E-value: 5.06e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  479 HLVNLNEDPLMSEcllYHIKDGITRVG-QVDVDIKLTGQFIREQHCLFRSIpqpDGEVVVT-LEPCEGaeTYVNGRLVTE 556
Cdd:cd00060      1 RLIVLDGDGGGRE---FPLTKGVVTIGrSPDCDIVLDDPSVSRRHARIEVD---GGGVYLEdLGSTNG--TFVNGKRITP 72
                           90       100
                   ....*....|....*....|
gi 1952762066  557 PLVLKSGNRIVMGkNHVFRF 576
Cdd:cd00060     73 PVPLQDGDVIRLG-DTTFRF 91
FHA pfam00498
FHA domain; The FHA (Forkhead-associated) domain is a phosphopeptide binding motif.
502-568 3.99e-06

FHA domain; The FHA (Forkhead-associated) domain is a phosphopeptide binding motif.


Pssm-ID: 459831 [Multi-domain]  Cd Length: 66  Bit Score: 45.26  E-value: 3.99e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  502 TRVGQ-VDVDIKLTGQFIREQHCLFRSipqpDGEVVVTLEPC-EGAETYVNGRLVT-EPLVLKSGNRIVM 568
Cdd:pfam00498    1 VTIGRsPDCDIVLDDPSVSRRHAEIRY----DGGGRFYLEDLgSTNGTFVNGQRLGpEPVRLKDGDVIRL 66
FHA COG1716
Forkhead associated (FHA) domain, binds pSer, pThr, pTyr [Signal transduction mechanisms];
495-576 1.49e-05

Forkhead associated (FHA) domain, binds pSer, pThr, pTyr [Signal transduction mechanisms];


Pssm-ID: 441322 [Multi-domain]  Cd Length: 96  Bit Score: 44.56  E-value: 1.49e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  495 YHIKDGITRVG-QVDVDIKLTGQFIREQHCLFRsipqPDGEVVVtLEPCEGA-ETYVNGRLVTEPLVLKSGNRIVMGKnH 572
Cdd:COG1716     16 FPLDGGPLTIGrAPDNDIVLDDPTVSRRHARIR----RDGGGWV-LEDLGSTnGTFVNGQRVTEPAPLRDGDVIRLGK-T 89

                   ....
gi 1952762066  573 VFRF 576
Cdd:COG1716     90 ELRF 93
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
72-267 5.59e-05

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 47.04  E-value: 5.59e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066   72 IFAYGQTGAGKSYTMMGRQEpgqqGIVPQLCEDLFSRVNKNESAQLSYSVEVSYMEIYCervrdllnpKSRGSLRVREHP 151
Cdd:COG5059    385 IFAYMQSLKKETETLKSRID----LIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEI---------DRLLLLREEELS 451
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  152 ILGPYVQDLSKL---AVTSYADIAD-----LMDCGNKA-RTVAATNMNETSSRSHAVFtivftqrCHDQLTGLDSEKVSK 222
Cdd:COG5059    452 KKKTKIHKLNKLrhdLSSLLSSIPEetsdrVESEKASKlRSSASTKLNLRSSRSHSKF-------RDHLNGSNSSTKELS 524
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*
gi 1952762066  223 ISLVDLAGSERaDSSGARGMRLKEGANINKSLTTLGKVISALADL 267
Cdd:COG5059    525 LNQVDLAGSER-KVSQSVGELLRETQSLNKSLSSLGDVIHALGSK 568
FHA_RADIL cd22733
forkhead associated (FHA) domain found in Ras-associating and dilute domain-containing protein ...
476-579 5.70e-05

forkhead associated (FHA) domain found in Ras-associating and dilute domain-containing protein (Radil); Radil acts as an important small GTPase Rap1 effector required for cell spreading and migration. It regulates neutrophil adhesion and motility through linking Rap1 to beta2-integrin activation. It contains an FHA domain. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438785  Cd Length: 113  Bit Score: 43.63  E-value: 5.70e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952762066  476 KTPHLVNLNEDPLMSECLLYHIKDGITRVGQ----VDVDIKLTGQFIREQHCLFRSIPQPDG--EVVVTLEPCEGAETYV 549
Cdd:cd22733      4 QSPHLLLLQGYNQQHDCLVYLLNREQHTVGQetpsSKPNISLSAPDILPLHCTIRRVRLPKHrsEEKLVLEPIPGAHVSV 83
                           90       100       110
                   ....*....|....*....|....*....|
gi 1952762066  550 NGRLVTEPLVLKSGNRIVMGKNHVFRFNHP 579
Cdd:cd22733     84 NFSEVERTTLLRHGDLLSFGAYYLFLFKDP 113
FHA_Ki67 cd22673
forkhead associated (FHA) domain found in proliferation marker protein Ki-67 and similar ...
510-576 1.26e-04

forkhead associated (FHA) domain found in proliferation marker protein Ki-67 and similar proteins; Ki-67, also called antigen identified by monoclonal antibody Ki-67, antigen KI-67, or antigen Ki67, acts as a biological surfactant to disperse mitotic chromosomes. It is required to maintain individual mitotic chromosomes dispersed in the cytoplasm following nuclear envelope disassembly. Ki-67 binds DNA with a preference for supercoiled DNA and AT-rich DNA. It may also play a role in chromatin organization. Ki-67 contains an FHA domain at its N-terminus. The FHA domain is a small phosphopeptide recognition module.


Pssm-ID: 438725 [Multi-domain]  Cd Length: 95  Bit Score: 41.81  E-value: 1.26e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1952762066  510 DIKLTGQFIREQHCLFRsipqPDGEVVVTLEP-CEGAETYVNGRLVTEPLVLKSGNRIVMGkNHVFRF 576
Cdd:cd22673     32 DIRIQLPGVSREHCRIE----VDENGKAYLENlSTTNPTLVNGKAIEKSAELKDGDVITIG-GRSFRF 94
FHA smart00240
Forkhead associated domain; Found in eukaryotic and prokaryotic proteins. Putative nuclear ...
508-554 1.48e-03

Forkhead associated domain; Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.


Pssm-ID: 214578 [Multi-domain]  Cd Length: 52  Bit Score: 37.54  E-value: 1.48e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*...
gi 1952762066   508 DVDIKLTGQFIREQHCLFRSipqpDGEVVVTLEPC-EGAETYVNGRLV 554
Cdd:smart00240    9 DCDIQLDGPSISRRHAVIVY----DGGGRFYLIDLgSTNGTFVNGKRI 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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