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Conserved domains on  [gi|1958796634|ref|XP_038937556|]
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CCR4-NOT transcription complex subunit 10 isoform X13 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
TPR super family cl33886
Tetratricopeptide (TPR) repeat [General function prediction only];
148-304 3.50e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


The actual alignment was detected with superfamily member COG0457:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 39.60  E-value: 3.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958796634 148 NSAPSLFLKSNFEYLRGNYRKAVKLLNSSnIAEHPGFMKTgeclrcmfWNNLGCIHFAMSKHNLGIFYFKKALQENDNVc 227
Cdd:COG0457     6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKA-LELDPDDAEA--------LYNLGLAYLRLGRYEEALADYEQALELDPDD- 75
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958796634 228 aqlsagntdpgkkfsgrpmctllankrYELLYNCGIQLLHVGRPLAAFECLVEAVQVYHANPRLWLRLAECCIAANK 304
Cdd:COG0457    76 ---------------------------AEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGR 125
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
148-304 3.50e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 39.60  E-value: 3.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958796634 148 NSAPSLFLKSNFEYLRGNYRKAVKLLNSSnIAEHPGFMKTgeclrcmfWNNLGCIHFAMSKHNLGIFYFKKALQENDNVc 227
Cdd:COG0457     6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKA-LELDPDDAEA--------LYNLGLAYLRLGRYEEALADYEQALELDPDD- 75
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958796634 228 aqlsagntdpgkkfsgrpmctllankrYELLYNCGIQLLHVGRPLAAFECLVEAVQVYHANPRLWLRLAECCIAANK 304
Cdd:COG0457    76 ---------------------------AEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGR 125
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
148-304 3.50e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 39.60  E-value: 3.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958796634 148 NSAPSLFLKSNFEYLRGNYRKAVKLLNSSnIAEHPGFMKTgeclrcmfWNNLGCIHFAMSKHNLGIFYFKKALQENDNVc 227
Cdd:COG0457     6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKA-LELDPDDAEA--------LYNLGLAYLRLGRYEEALADYEQALELDPDD- 75
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958796634 228 aqlsagntdpgkkfsgrpmctllankrYELLYNCGIQLLHVGRPLAAFECLVEAVQVYHANPRLWLRLAECCIAANK 304
Cdd:COG0457    76 ---------------------------AEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGR 125
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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