NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1958662450|ref|XP_038943262|]
View 

zinc finger ZZ-type and EF-hand domain-containing protein 1 isoform X3 [Rattus norvegicus]

Protein Classification

ZZ_EF and ZZ domain-containing protein( domain architecture ID 10115876)

ZZ_EF and ZZ domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
ZZ_EF cd02343
Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif ...
541-588 1.28e-30

Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.


:

Pssm-ID: 239083  Cd Length: 48  Bit Score: 115.10  E-value: 1.28e-30
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 1958662450  541 ISCDGCDEIAPWHRYRCLQCSDMDLCKTCFLGGVKPEGHGDDHEMVNM 588
Cdd:cd02343      1 ISCDGCDEIAPWHRYRCLQCTDMDLCKTCFLGGVKPEGHEDDHEMVNM 48
ZZ cd02249
Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ...
590-637 6.22e-17

Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.


:

Pssm-ID: 239069 [Multi-domain]  Cd Length: 46  Bit Score: 75.93  E-value: 6.22e-17
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 1958662450  590 FTCDHCQGLIIGRRMNCNVCDDFDLCYGCYAAKKysYGHLPTHSITAH 637
Cdd:cd02249      1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKGK--KGHPPDHSFTEI 46
 
Name Accession Description Interval E-value
ZZ_EF cd02343
Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif ...
541-588 1.28e-30

Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.


Pssm-ID: 239083  Cd Length: 48  Bit Score: 115.10  E-value: 1.28e-30
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 1958662450  541 ISCDGCDEIAPWHRYRCLQCSDMDLCKTCFLGGVKPEGHGDDHEMVNM 588
Cdd:cd02343      1 ISCDGCDEIAPWHRYRCLQCTDMDLCKTCFLGGVKPEGHEDDHEMVNM 48
ZZ cd02249
Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ...
590-637 6.22e-17

Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.


Pssm-ID: 239069 [Multi-domain]  Cd Length: 46  Bit Score: 75.93  E-value: 6.22e-17
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 1958662450  590 FTCDHCQGLIIGRRMNCNVCDDFDLCYGCYAAKKysYGHLPTHSITAH 637
Cdd:cd02249      1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKGK--KGHPPDHSFTEI 46
ZnF_ZZ smart00291
Zinc-binding domain, present in Dystrophin, CREB-binding protein; Putative zinc-binding domain ...
588-628 1.97e-11

Zinc-binding domain, present in Dystrophin, CREB-binding protein; Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy.


Pssm-ID: 197633 [Multi-domain]  Cd Length: 44  Bit Score: 60.15  E-value: 1.97e-11
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 1958662450   588 MEFTCDHCQGLIIGRRMNCNVCDDFDLCYGCYAAKKYSYGH 628
Cdd:smart00291    3 HSYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAKGSAGGEH 43
ZnF_ZZ smart00291
Zinc-binding domain, present in Dystrophin, CREB-binding protein; Putative zinc-binding domain ...
540-579 6.14e-08

Zinc-binding domain, present in Dystrophin, CREB-binding protein; Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy.


Pssm-ID: 197633 [Multi-domain]  Cd Length: 44  Bit Score: 50.52  E-value: 6.14e-08
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|
gi 1958662450   540 DISCDGCDEIAPWHRYRCLQCSDMDLCKTCFLGGVKPEGH 579
Cdd:smart00291    4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAKGSAGGEH 43
ZZ pfam00569
Zinc finger, ZZ type; Zinc finger present in dystrophin, CBP/p300. ZZ in dystrophin binds ...
588-624 3.73e-05

Zinc finger, ZZ type; Zinc finger present in dystrophin, CBP/p300. ZZ in dystrophin binds calmodulin. Putative zinc finger; binding not yet shown. Four to six cysteine residues in its sequence are responsible for coordinating zinc ions, to reinforce the structure.


Pssm-ID: 395451  Cd Length: 45  Bit Score: 42.47  E-value: 3.73e-05
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 1958662450  588 MEFTCDHCQ-GLIIGRRMNCNVCDDFDLCYGCYAAKKY 624
Cdd:pfam00569    3 KVYTCNGCSnDPSIGVRYHCLRCSDYDLCQSCFQTHKG 40
ZZ pfam00569
Zinc finger, ZZ type; Zinc finger present in dystrophin, CBP/p300. ZZ in dystrophin binds ...
542-585 3.77e-05

Zinc finger, ZZ type; Zinc finger present in dystrophin, CBP/p300. ZZ in dystrophin binds calmodulin. Putative zinc finger; binding not yet shown. Four to six cysteine residues in its sequence are responsible for coordinating zinc ions, to reinforce the structure.


Pssm-ID: 395451  Cd Length: 45  Bit Score: 42.47  E-value: 3.77e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 1958662450  542 SCDGC--DEIAPWhRYRCLQCSDMDLCKTCFlggvkPEGHGDDHEM 585
Cdd:pfam00569    6 TCNGCsnDPSIGV-RYHCLRCSDYDLCQSCF-----QTHKGGNHQM 45
COG5114 COG5114
Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics];
585-632 2.11e-03

Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics];


Pssm-ID: 227445 [Multi-domain]  Cd Length: 432  Bit Score: 42.75  E-value: 2.11e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 1958662450  585 MVNMEFTCDHCQGLIIGR-RMNCNVCDDFDLCYGCYAAKKYSYGHLPTH 632
Cdd:COG5114      1 MGGVKIHCDVCFLDMTDLtFIKCNECPAVDLCLPCFVNGIETGVHSPYH 49
 
Name Accession Description Interval E-value
ZZ_EF cd02343
Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif ...
541-588 1.28e-30

Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.


Pssm-ID: 239083  Cd Length: 48  Bit Score: 115.10  E-value: 1.28e-30
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 1958662450  541 ISCDGCDEIAPWHRYRCLQCSDMDLCKTCFLGGVKPEGHGDDHEMVNM 588
Cdd:cd02343      1 ISCDGCDEIAPWHRYRCLQCTDMDLCKTCFLGGVKPEGHEDDHEMVNM 48
ZZ cd02249
Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ...
590-637 6.22e-17

Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.


Pssm-ID: 239069 [Multi-domain]  Cd Length: 46  Bit Score: 75.93  E-value: 6.22e-17
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 1958662450  590 FTCDHCQGLIIGRRMNCNVCDDFDLCYGCYAAKKysYGHLPTHSITAH 637
Cdd:cd02249      1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKGK--KGHPPDHSFTEI 46
ZZ cd02249
Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ...
541-588 1.01e-12

Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.


Pssm-ID: 239069 [Multi-domain]  Cd Length: 46  Bit Score: 63.99  E-value: 1.01e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 1958662450  541 ISCDGCDEIAPWHRYRCLQCSDMDLCKTCFLGGVKpeGHGDDHEMVNM 588
Cdd:cd02249      1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKGKK--GHPPDHSFTEI 46
ZnF_ZZ smart00291
Zinc-binding domain, present in Dystrophin, CREB-binding protein; Putative zinc-binding domain ...
588-628 1.97e-11

Zinc-binding domain, present in Dystrophin, CREB-binding protein; Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy.


Pssm-ID: 197633 [Multi-domain]  Cd Length: 44  Bit Score: 60.15  E-value: 1.97e-11
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 1958662450   588 MEFTCDHCQGLIIGRRMNCNVCDDFDLCYGCYAAKKYSYGH 628
Cdd:smart00291    3 HSYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAKGSAGGEH 43
ZZ_PCMF_like cd02338
Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and ...
541-585 7.94e-10

Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.


Pssm-ID: 239078  Cd Length: 49  Bit Score: 55.82  E-value: 7.94e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 1958662450  541 ISCDGCDEIAPW-HRYRCLQCSDMDLCKTCFLGGVKPEGHGDDHEM 585
Cdd:cd02338      1 VSCDGCGKSNFTgRRYKCLICYDYDLCADCYDSGVTTERHLFDHPM 46
ZZ_NBR1_like cd02340
Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 ...
590-642 3.74e-09

Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.


Pssm-ID: 239080  Cd Length: 43  Bit Score: 53.80  E-value: 3.74e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1958662450  590 FTCDHCQGLIIGRRMNCNVCDDFDLCYGCYAAkkysyghlPTHsiTAHPMVTI 642
Cdd:cd02340      1 VICDGCQGPIVGVRYKCLVCPDYDLCESCEAK--------GVH--PEHAMLKI 43
ZZ_dystrophin cd02334
Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif ...
541-586 4.04e-08

Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.


Pssm-ID: 239074  Cd Length: 49  Bit Score: 50.82  E-value: 4.04e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 1958662450  541 ISCDGCDEIaPWH--RYRCLQCSDMDLCKTCFLGGVKPEGHGDDHEMV 586
Cdd:cd02334      1 AKCNICKEF-PITgfRYRCLKCFNYDLCQSCFFSGRTSKSHKNSHPMK 47
ZnF_ZZ smart00291
Zinc-binding domain, present in Dystrophin, CREB-binding protein; Putative zinc-binding domain ...
540-579 6.14e-08

Zinc-binding domain, present in Dystrophin, CREB-binding protein; Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy.


Pssm-ID: 197633 [Multi-domain]  Cd Length: 44  Bit Score: 50.52  E-value: 6.14e-08
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|
gi 1958662450   540 DISCDGCDEIAPWHRYRCLQCSDMDLCKTCFLGGVKPEGH 579
Cdd:smart00291    4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAKGSAGGEH 43
ZZ_NBR1_like cd02340
Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 ...
541-588 1.96e-07

Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.


Pssm-ID: 239080  Cd Length: 43  Bit Score: 48.80  E-value: 1.96e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 1958662450  541 ISCDGCDEIAPWHRYRCLQCSDMDLCKTCFLGGVKPEghgddHEMVNM 588
Cdd:cd02340      1 VICDGCQGPIVGVRYKCLVCPDYDLCESCEAKGVHPE-----HAMLKI 43
ZZ_CBP cd02337
Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif ...
590-637 4.88e-06

Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.


Pssm-ID: 239077  Cd Length: 41  Bit Score: 44.86  E-value: 4.88e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 1958662450  590 FTCDHCQgLIIGRRMNCNVCDDFDLCYGCYAAKkysyGHlpTHSITAH 637
Cdd:cd02337      1 YTCNECK-HHVETRWHCTVCEDYDLCITCYNTK----NH--PHKMEKL 41
ZZ_ADA2 cd02335
Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and ...
590-633 6.33e-06

Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.


Pssm-ID: 239075 [Multi-domain]  Cd Length: 49  Bit Score: 44.98  E-value: 6.33e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 1958662450  590 FTCDHCQGLIIGR-RMNCNVCDDFDLCYGCYAAKKYSYGHLPTHS 633
Cdd:cd02335      1 YHCDYCSKDITGTiRIKCAECPDFDLCLECFSAGAEIGKHRNDHN 45
ZZ_HERC2 cd02344
Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential ...
591-633 1.77e-05

Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.


Pssm-ID: 239084  Cd Length: 45  Bit Score: 43.34  E-value: 1.77e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 1958662450  591 TCDHCQGLII-GRRMNCNVCDDFDLCYGCYAAKKysygHLPTHS 633
Cdd:cd02344      2 TCDGCQMFPInGPRFKCRNCDDFDFCENCFKTRK----HNTRHT 41
ZZ_ADA2 cd02335
Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and ...
541-583 3.20e-05

Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.


Pssm-ID: 239075 [Multi-domain]  Cd Length: 49  Bit Score: 42.66  E-value: 3.20e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 1958662450  541 ISCDGCD-EIAPWHRYRCLQCSDMDLCKTCFLGGVKPEGHGDDH 583
Cdd:cd02335      1 YHCDYCSkDITGTIRIKCAECPDFDLCLECFSAGAEIGKHRNDH 44
ZZ_PCMF_like cd02338
Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and ...
591-635 3.40e-05

Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.


Pssm-ID: 239078  Cd Length: 49  Bit Score: 42.72  E-value: 3.40e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 1958662450  591 TCDHCQ-GLIIGRRMNCNVCDDFDLCYGCYAAKKYSYGHLPTHSIT 635
Cdd:cd02338      2 SCDGCGkSNFTGRRYKCLICYDYDLCADCYDSGVTTERHLFDHPMQ 47
ZZ pfam00569
Zinc finger, ZZ type; Zinc finger present in dystrophin, CBP/p300. ZZ in dystrophin binds ...
588-624 3.73e-05

Zinc finger, ZZ type; Zinc finger present in dystrophin, CBP/p300. ZZ in dystrophin binds calmodulin. Putative zinc finger; binding not yet shown. Four to six cysteine residues in its sequence are responsible for coordinating zinc ions, to reinforce the structure.


Pssm-ID: 395451  Cd Length: 45  Bit Score: 42.47  E-value: 3.73e-05
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 1958662450  588 MEFTCDHCQ-GLIIGRRMNCNVCDDFDLCYGCYAAKKY 624
Cdd:pfam00569    3 KVYTCNGCSnDPSIGVRYHCLRCSDYDLCQSCFQTHKG 40
ZZ pfam00569
Zinc finger, ZZ type; Zinc finger present in dystrophin, CBP/p300. ZZ in dystrophin binds ...
542-585 3.77e-05

Zinc finger, ZZ type; Zinc finger present in dystrophin, CBP/p300. ZZ in dystrophin binds calmodulin. Putative zinc finger; binding not yet shown. Four to six cysteine residues in its sequence are responsible for coordinating zinc ions, to reinforce the structure.


Pssm-ID: 395451  Cd Length: 45  Bit Score: 42.47  E-value: 3.77e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 1958662450  542 SCDGC--DEIAPWhRYRCLQCSDMDLCKTCFlggvkPEGHGDDHEM 585
Cdd:pfam00569    6 TCNGCsnDPSIGV-RYHCLRCSDYDLCQSCF-----QTHKGGNHQM 45
ZZ_Mind_bomb cd02339
Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. ...
592-628 2.39e-04

Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.


Pssm-ID: 239079  Cd Length: 45  Bit Score: 40.13  E-value: 2.39e-04
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 1958662450  592 CDHCQGL-IIGRRMNCNVCDDFDLCYGCYAAKKYSYGH 628
Cdd:cd02339      3 CDTCRKQgIIGIRWKCAECPNYDLCTTCYHGDKHDLEH 40
ZZ_dah cd02345
Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif ...
591-632 2.79e-04

Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.


Pssm-ID: 239085  Cd Length: 49  Bit Score: 40.27  E-value: 2.79e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 1958662450  591 TCDHCQGL-IIGRRMNCNVCDDFDLCYGCYAAKKYSYGHLPTH 632
Cdd:cd02345      2 SCSACRKQdISGIRFPCQVCRDYSLCLGCYTKGRETKRHNSLH 44
ZZ_ZZZ3 cd02341
Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related ...
541-586 1.52e-03

Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.


Pssm-ID: 239081  Cd Length: 48  Bit Score: 38.18  E-value: 1.52e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 1958662450  541 ISCDGCD-EIAPWHRYRCLQCS--DMDLCKTCFlggVKPEGHGDDHEMV 586
Cdd:cd02341      1 FKCDSCGiEPIPGTRYHCSECDdgDFDLCQDCV---VKGESHQEDHWLV 46
COG5114 COG5114
Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics];
585-632 2.11e-03

Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics];


Pssm-ID: 227445 [Multi-domain]  Cd Length: 432  Bit Score: 42.75  E-value: 2.11e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 1958662450  585 MVNMEFTCDHCQGLIIGR-RMNCNVCDDFDLCYGCYAAKKYSYGHLPTH 632
Cdd:COG5114      1 MGGVKIHCDVCFLDMTDLtFIKCNECPAVDLCLPCFVNGIETGVHSPYH 49
ZZ_Mind_bomb cd02339
Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. ...
541-585 5.97e-03

Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.


Pssm-ID: 239079  Cd Length: 45  Bit Score: 36.28  E-value: 5.97e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 1958662450  541 ISCDGCDE--IAPWhRYRCLQCSDMDLCKTCFlggvkpegHGDDHEM 585
Cdd:cd02339      1 IICDTCRKqgIIGI-RWKCAECPNYDLCTTCY--------HGDKHDL 38
ZZ_HERC2 cd02344
Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential ...
541-570 6.10e-03

Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.


Pssm-ID: 239084  Cd Length: 45  Bit Score: 36.41  E-value: 6.10e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1958662450  541 ISCDGCdEIAPWH--RYRCLQCSDMDLCKTCF 570
Cdd:cd02344      1 VTCDGC-QMFPINgpRFKCRNCDDFDFCENCF 31
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH