|
Name |
Accession |
Description |
Interval |
E-value |
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
15-264 |
6.98e-21 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 93.05 E-value: 6.98e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669464 15 AWNKDRTQIAICPNNHEVHIYEKSGAKwnKVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWTLkgRTWKPTLVILR 94
Cdd:COG2319 127 AFSPDGKTLASGSADGTVRLWDLATGK--LLRTLTGHSGAVTSVAFSPDGKLLASGSDDGTVRLWDL--ATGKLLRTLTG 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669464 95 INRAARCVRWAPNENKFAVGSGSRVISIcyfeqendWWV----CKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFS 170
Cdd:COG2319 203 HTGAVRSVAFSPDGKLLASGSADGTVRL--------WDLatgkLLRTLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWD 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669464 171 AyikeveerpaptpwgskmPFGELMFESSSSCGWVHGVCFSAGGSRVAWVSHDSTVCLVDAEKKMAVATLASETLPLLAI 250
Cdd:COG2319 275 L------------------ATGELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSV 336
|
250
....*....|....
gi 1958669464 251 TFITENSLVAAGHD 264
Cdd:COG2319 337 AFSPDGKTLASGSD 350
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
45-264 |
4.61e-16 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 77.76 E-value: 4.61e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669464 45 VHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRInrAARCVRWAPNENKFAVGSGSRVISIcy 124
Cdd:cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTG--PVRDVAASADGTYLASGSSDKTIRL-- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669464 125 feqendWWV----CKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFS-AYIKEVEERPAPTPWGSKMPF-GELMFES 198
Cdd:cd00200 78 ------WDLetgeCVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDvETGKCLTTLRGHTDWVNSVAFsPDGTFVA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669464 199 SSSC----------------------GWVHGVCFSAGGSRVAWVSHDSTVCLVDAEKKMAVATLASETLPLLAITFITEN 256
Cdd:cd00200 152 SSSQdgtiklwdlrtgkcvatltghtGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG 231
|
....*...
gi 1958669464 257 SLVAAGHD 264
Cdd:cd00200 232 YLLASGSE 239
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
41-79 |
3.09e-06 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 43.46 E-value: 3.09e-06
10 20 30
....*....|....*....|....*....|....*....
gi 1958669464 41 KWNKVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVW 79
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
42-79 |
5.10e-05 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 40.02 E-value: 5.10e-05
10 20 30
....*....|....*....|....*....|....*...
gi 1958669464 42 WNKVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVW 79
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVW 38
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
15-264 |
6.98e-21 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 93.05 E-value: 6.98e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669464 15 AWNKDRTQIAICPNNHEVHIYEKSGAKwnKVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWTLkgRTWKPTLVILR 94
Cdd:COG2319 127 AFSPDGKTLASGSADGTVRLWDLATGK--LLRTLTGHSGAVTSVAFSPDGKLLASGSDDGTVRLWDL--ATGKLLRTLTG 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669464 95 INRAARCVRWAPNENKFAVGSGSRVISIcyfeqendWWV----CKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFS 170
Cdd:COG2319 203 HTGAVRSVAFSPDGKLLASGSADGTVRL--------WDLatgkLLRTLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWD 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669464 171 AyikeveerpaptpwgskmPFGELMFESSSSCGWVHGVCFSAGGSRVAWVSHDSTVCLVDAEKKMAVATLASETLPLLAI 250
Cdd:COG2319 275 L------------------ATGELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSV 336
|
250
....*....|....
gi 1958669464 251 TFITENSLVAAGHD 264
Cdd:COG2319 337 AFSPDGKTLASGSD 350
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
15-262 |
2.10e-19 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 88.81 E-value: 2.10e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669464 15 AWNKDRTQIAICPNNHEVHIYEKSGAKwnKVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWTLKGRTWKPTLVilR 94
Cdd:COG2319 169 AFSPDGKLLASGSDDGTVRLWDLATGK--LLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLRTLT--G 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669464 95 INRAARCVRWAPNENKFAVGSGSRVISICyfeqENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAyik 174
Cdd:COG2319 245 HSGSVRSVAFSPDGRLLASGSADGTVRLW----DLATGELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDL--- 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669464 175 eveerpaptpwgskmPFGELMFESSSSCGWVHGVCFSAGGSRVAWVSHDSTVCLVDAEKKMAVATLASETLPLLAITFIT 254
Cdd:COG2319 318 ---------------ATGKLLRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFSP 382
|
....*...
gi 1958669464 255 ENSLVAAG 262
Cdd:COG2319 383 DGRTLASG 390
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
15-264 |
1.29e-16 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 80.73 E-value: 1.29e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669464 15 AWNKDRTQIAICPNNHEVHIYEKSGAKWnkVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWTLkgRTWKPTLVILR 94
Cdd:COG2319 85 AFSPDGRLLASASADGTVRLWDLATGLL--LRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDL--ATGKLLRTLTG 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669464 95 INRAARCVRWAPNENKFAVGSGSRVISIcyfeqendWWV----CKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFS 170
Cdd:COG2319 161 HSGAVTSVAFSPDGKLLASGSDDGTVRL--------WDLatgkLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWD 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669464 171 ayikeveerpAPTpwgskmpfGELMFESSSSCGWVHGVCFSAGGSRVAWVSHDSTVCLVDAEKKMAVATLASETLPLLAI 250
Cdd:COG2319 233 ----------LAT--------GKLLRTLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGHSGGVNSV 294
|
250
....*....|....
gi 1958669464 251 TFITENSLVAAGHD 264
Cdd:COG2319 295 AFSPDGKLLASGSD 308
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
45-264 |
4.61e-16 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 77.76 E-value: 4.61e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669464 45 VHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRInrAARCVRWAPNENKFAVGSGSRVISIcy 124
Cdd:cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTG--PVRDVAASADGTYLASGSSDKTIRL-- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669464 125 feqendWWV----CKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFS-AYIKEVEERPAPTPWGSKMPF-GELMFES 198
Cdd:cd00200 78 ------WDLetgeCVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDvETGKCLTTLRGHTDWVNSVAFsPDGTFVA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669464 199 SSSC----------------------GWVHGVCFSAGGSRVAWVSHDSTVCLVDAEKKMAVATLASETLPLLAITFITEN 256
Cdd:cd00200 152 SSSQdgtiklwdlrtgkcvatltghtGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG 231
|
....*...
gi 1958669464 257 SLVAAGHD 264
Cdd:cd00200 232 YLLASGSE 239
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
4-265 |
1.60e-13 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 70.06 E-value: 1.60e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669464 4 HSFLVEPISCHAwnkDRTQIAICPNNHEVHIYEKSGAKwnKVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWTLkg 83
Cdd:cd00200 50 HTGPVRDVAASA---DGTYLASGSSDKTIRLWDLETGE--CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV-- 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669464 84 RTWKPTLVILRINRAARCVRWAPNeNKFAVGSGS-RVISICyfeqENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSC 162
Cdd:cd00200 123 ETGKCLTTLRGHTDWVNSVAFSPD-GTFVASSSQdGTIKLW----DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669464 163 DFKCRIFSAYikeveerpaptpwgSKMPFGELmfesSSSCGWVHGVCFSAGGSRVAWVSHDSTVCLVDAEKKMAVATLAS 242
Cdd:cd00200 198 DGTIKLWDLS--------------TGKCLGTL----RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG 259
|
250 260
....*....|....*....|....
gi 1958669464 243 ETLPLLAITFITENS-LVAAGHDC 265
Cdd:cd00200 260 HTNSVTSLAWSPDGKrLASGSADG 283
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
9-226 |
3.63e-13 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 69.29 E-value: 3.63e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669464 9 EPISCHAWNKDRTQIAICPNNHEVHIYEksGAKWNKVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWTLkgRTWKP 88
Cdd:cd00200 94 SYVSSVAFSPDGRILSSSSRDKTIKVWD--VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL--RTGKC 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669464 89 TLVILRINRAARCVRWAPNENKFAVGSGSRVISIcyFEQENDWWVCKHIKKpiRSTVLSLDWHPNNVLLAAGSCDFKCRI 168
Cdd:cd00200 170 VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL--WDLSTGKCLGTLRGH--ENGVNSVAFSPDGYLLASGSEDGTIRV 245
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958669464 169 fsayikeveerpaptpWGSKMpfGELMFESSSSCGWVHGVCFSAGGSRVAWVSHDSTV 226
Cdd:cd00200 246 ----------------WDLRT--GECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTI 285
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
10-170 |
2.23e-12 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 66.97 E-value: 2.23e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669464 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGAKwnKVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWTLKGRTWKPT 89
Cdd:cd00200 137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK--CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669464 90 LVilRINRAARCVRWAPNENKFAVGSGSRVISIcyfeqendW-WVCKHIKKPIR---STVLSLDWHPNNVLLAAGSCDFK 165
Cdd:cd00200 215 LR--GHENGVNSVAFSPDGYLLASGSEDGTIRV--------WdLRTGECVQTLSghtNSVTSLAWSPDGKRLASGSADGT 284
|
....*
gi 1958669464 166 CRIFS 170
Cdd:cd00200 285 IRIWD 289
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
15-163 |
1.02e-09 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 59.54 E-value: 1.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669464 15 AWNKDRTQIAICPNNHEVHIYEKSGAKWnkVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWTLKgrTWKPTLVILR 94
Cdd:COG2319 253 AFSPDGRLLASGSADGTVRLWDLATGEL--LRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLA--TGKLLRTLTG 328
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958669464 95 INRAARCVRWAPNENKFAVGSGSRVISIcyfeqendW----WVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCD 163
Cdd:COG2319 329 HTGAVRSVAFSPDGKTLASGSDDGTVRL--------WdlatGELLRTLTGHTGAVTSVAFSPDGRTLASGSAD 393
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
41-79 |
3.09e-06 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 43.46 E-value: 3.09e-06
10 20 30
....*....|....*....|....*....|....*....
gi 1958669464 41 KWNKVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVW 79
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
59-264 |
4.50e-05 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 45.29 E-value: 4.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669464 59 DWAPESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRinRAARCVRWAPNENKFAVGSGSRVISIcyfeQENDWWVCKHIK 138
Cdd:COG2319 1 ALSADGAALAAASADLALALLAAALGALLLLLLGLA--AAVASLAASPDGARLAAGAGDLTLLL----LDAAAGALLATL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669464 139 KPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAyikeVEERPAPTPWGSKmpfgelmfesssscGWVHGVCFSAGGSRVA 218
Cdd:COG2319 75 LGHTAAVLSVAFSPDGRLLASASADGTVRLWDL----ATGLLLRTLTGHT--------------GAVRSVAFSPDGKTLA 136
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1958669464 219 WVSHDSTVCLVDAEKKMAVATLASETLPLLAITFITENSLVAAGHD 264
Cdd:COG2319 137 SGSADGTVRLWDLATGKLLRTLTGHSGAVTSVAFSPDGKLLASGSD 182
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
42-79 |
5.10e-05 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 40.02 E-value: 5.10e-05
10 20 30
....*....|....*....|....*....|....*...
gi 1958669464 42 WNKVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVW 79
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVW 38
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
15-83 |
3.25e-04 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 42.59 E-value: 3.25e-04
10 20 30 40 50 60
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gi 1958669464 15 AWNKDRTQIAICPNNHEVHIYEKSGAKwnKVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWTLKG 83
Cdd:COG2319 337 AFSPDGKTLASGSDDGTVRLWDLATGE--LLRTLTGHTGAVTSVAFSPDGRTLASGSADGTVRLWDLAT 403
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