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Conserved domains on  [gi|1958679276|ref|XP_038948927|]
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clusterin isoform X2 [Rattus norvegicus]

Protein Classification

Clusterin domain-containing protein( domain architecture ID 12014179)

Clusterin domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Clusterin pfam01093
Clusterin;
29-444 0e+00

Clusterin;


:

Pssm-ID: 426044 [Multi-domain]  Cd Length: 418  Bit Score: 585.70  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679276  29 ELQELSTQGSRYVNKEIQNAVQGVKHIKTLIEKTNAERKSLLNSLEEAKKKKEGALDDTRDSEMKLKAFPEVCNETMMAL 108
Cdd:pfam01093   1 ELKELSEQGEKYVDEEVKNALIGVKQMKTMMEKREEEHKKLMKSLEKSKEKKEEALKLAKEVEEKLEEEEEVCNESMKAL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679276 109 WEECKPCLKHTCMKFYARVCRSGSGLVGRQLEEFLNQSSPFYFWMNGDRIDSLL--ESDRQQSQVLDAMQDSFTRASGII 186
Cdd:pfam01093  81 WEECKPCLESTCMKFYTRTCRSGSGLVGRQLEEFFNRISPFSFWINGDRIDDLLvnEEDQEQDAQLDQMEDSFSQLSSDV 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679276 187 DTLFQDRFFTHEPQDIHHFSPMGFPHKRPHFLY-----------PKSRLVRSlmplshygpLSFHNMFQPFFDMIHQAQQ 255
Cdd:pfam01093 161 DSLFNRSFKVFKQMQQEFDQAFQSYFMSDLDLTepyffpskeptRKSRFLQS---------WGFPNVFQPFFDFSRSVFE 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679276 256 AMDVQLHSPALQFPDVDFLKEG-EDDRTVCKEIRHNSTGCLKMKGQCEKCQEILSVDCstnnPAQANLRQELNDSLQVAE 334
Cdd:pfam01093 232 SFSAVITETLDSDPGGLFSKELpGQDRMLCRELRRNSSGCLKFQDRCEKCQEILSVDC----PSVPELHEELEEALQLAE 307
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679276 335 RLTQQYNELLHSLQSKMLNTSSLLEQLNDQFSWVSQLANLTQGDDQYLRVSTVTTHSSDSE-VPSRVTEVVVKLFDSDPI 413
Cdd:pfam01093 308 VSTQQYDELLQIVQHHMEDTSSLLDQMNEQFGWVSELANQTQGPENIFNVTTVVPKSSEGEsSKQGDTKVEVSILDSPPF 387
                         410       420       430
                  ....*....|....*....|....*....|.
gi 1958679276 414 TVVLPEEVSKDNPKFMDTVAEKALQEYRRKS 444
Cdd:pfam01093 388 TLTVPGELSWDDPKFIEYVAQKALQHYKQHF 418
 
Name Accession Description Interval E-value
Clusterin pfam01093
Clusterin;
29-444 0e+00

Clusterin;


Pssm-ID: 426044 [Multi-domain]  Cd Length: 418  Bit Score: 585.70  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679276  29 ELQELSTQGSRYVNKEIQNAVQGVKHIKTLIEKTNAERKSLLNSLEEAKKKKEGALDDTRDSEMKLKAFPEVCNETMMAL 108
Cdd:pfam01093   1 ELKELSEQGEKYVDEEVKNALIGVKQMKTMMEKREEEHKKLMKSLEKSKEKKEEALKLAKEVEEKLEEEEEVCNESMKAL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679276 109 WEECKPCLKHTCMKFYARVCRSGSGLVGRQLEEFLNQSSPFYFWMNGDRIDSLL--ESDRQQSQVLDAMQDSFTRASGII 186
Cdd:pfam01093  81 WEECKPCLESTCMKFYTRTCRSGSGLVGRQLEEFFNRISPFSFWINGDRIDDLLvnEEDQEQDAQLDQMEDSFSQLSSDV 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679276 187 DTLFQDRFFTHEPQDIHHFSPMGFPHKRPHFLY-----------PKSRLVRSlmplshygpLSFHNMFQPFFDMIHQAQQ 255
Cdd:pfam01093 161 DSLFNRSFKVFKQMQQEFDQAFQSYFMSDLDLTepyffpskeptRKSRFLQS---------WGFPNVFQPFFDFSRSVFE 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679276 256 AMDVQLHSPALQFPDVDFLKEG-EDDRTVCKEIRHNSTGCLKMKGQCEKCQEILSVDCstnnPAQANLRQELNDSLQVAE 334
Cdd:pfam01093 232 SFSAVITETLDSDPGGLFSKELpGQDRMLCRELRRNSSGCLKFQDRCEKCQEILSVDC----PSVPELHEELEEALQLAE 307
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679276 335 RLTQQYNELLHSLQSKMLNTSSLLEQLNDQFSWVSQLANLTQGDDQYLRVSTVTTHSSDSE-VPSRVTEVVVKLFDSDPI 413
Cdd:pfam01093 308 VSTQQYDELLQIVQHHMEDTSSLLDQMNEQFGWVSELANQTQGPENIFNVTTVVPKSSEGEsSKQGDTKVEVSILDSPPF 387
                         410       420       430
                  ....*....|....*....|....*....|.
gi 1958679276 414 TVVLPEEVSKDNPKFMDTVAEKALQEYRRKS 444
Cdd:pfam01093 388 TLTVPGELSWDDPKFIEYVAQKALQHYKQHF 418
CLa smart00035
CLUSTERIN alpha chain;
227-441 1.84e-142

CLUSTERIN alpha chain;


Pssm-ID: 128350  Cd Length: 216  Bit Score: 405.70  E-value: 1.84e-142
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679276  227 SLMPLSHYGPLSFHNMFQPFFDMIHQAQQAMDVQLHSPALQFPDVDFLKEGEDDRTVCKEIRHNSTGCLKMKGQCEKCQE 306
Cdd:smart00035   1 NLMPFPQYWPLNFHDMFQPFFDMIHQAQQAMDTHLHRPPYQFPKQDFAEEHGDDRTVCKEIRHNSTGCLKMKDQCEKCQE 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679276  307 ILSVDCSTNNPAQANLRQELNDSLQVAERLTQQYNELLHSLQSKMLNTSSLLEQLNDQFSWVSQLANLTQGDDQ-YLRVS 385
Cdd:smart00035  81 ILSVDCSTNNPDQPQLRQELDESLQLAERFTQQYDQLLQSYQKKMLNTSSLLEQLNEQFGWVSQLANLTQGEDQyYLQVT 160
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1958679276  386 TVTTHSSDSEVPSRVTEVVVKLFDSDPITVVLPEEVSKDNPKFMDTVAEKALQEYR 441
Cdd:smart00035 161 TVPSHTSDSSVPSGTTKVVVKLFDSDPITLTIPEEVSADNPKFMETVAEKALQHYR 216
 
Name Accession Description Interval E-value
Clusterin pfam01093
Clusterin;
29-444 0e+00

Clusterin;


Pssm-ID: 426044 [Multi-domain]  Cd Length: 418  Bit Score: 585.70  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679276  29 ELQELSTQGSRYVNKEIQNAVQGVKHIKTLIEKTNAERKSLLNSLEEAKKKKEGALDDTRDSEMKLKAFPEVCNETMMAL 108
Cdd:pfam01093   1 ELKELSEQGEKYVDEEVKNALIGVKQMKTMMEKREEEHKKLMKSLEKSKEKKEEALKLAKEVEEKLEEEEEVCNESMKAL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679276 109 WEECKPCLKHTCMKFYARVCRSGSGLVGRQLEEFLNQSSPFYFWMNGDRIDSLL--ESDRQQSQVLDAMQDSFTRASGII 186
Cdd:pfam01093  81 WEECKPCLESTCMKFYTRTCRSGSGLVGRQLEEFFNRISPFSFWINGDRIDDLLvnEEDQEQDAQLDQMEDSFSQLSSDV 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679276 187 DTLFQDRFFTHEPQDIHHFSPMGFPHKRPHFLY-----------PKSRLVRSlmplshygpLSFHNMFQPFFDMIHQAQQ 255
Cdd:pfam01093 161 DSLFNRSFKVFKQMQQEFDQAFQSYFMSDLDLTepyffpskeptRKSRFLQS---------WGFPNVFQPFFDFSRSVFE 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679276 256 AMDVQLHSPALQFPDVDFLKEG-EDDRTVCKEIRHNSTGCLKMKGQCEKCQEILSVDCstnnPAQANLRQELNDSLQVAE 334
Cdd:pfam01093 232 SFSAVITETLDSDPGGLFSKELpGQDRMLCRELRRNSSGCLKFQDRCEKCQEILSVDC----PSVPELHEELEEALQLAE 307
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679276 335 RLTQQYNELLHSLQSKMLNTSSLLEQLNDQFSWVSQLANLTQGDDQYLRVSTVTTHSSDSE-VPSRVTEVVVKLFDSDPI 413
Cdd:pfam01093 308 VSTQQYDELLQIVQHHMEDTSSLLDQMNEQFGWVSELANQTQGPENIFNVTTVVPKSSEGEsSKQGDTKVEVSILDSPPF 387
                         410       420       430
                  ....*....|....*....|....*....|.
gi 1958679276 414 TVVLPEEVSKDNPKFMDTVAEKALQEYRRKS 444
Cdd:pfam01093 388 TLTVPGELSWDDPKFIEYVAQKALQHYKQHF 418
CLa smart00035
CLUSTERIN alpha chain;
227-441 1.84e-142

CLUSTERIN alpha chain;


Pssm-ID: 128350  Cd Length: 216  Bit Score: 405.70  E-value: 1.84e-142
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679276  227 SLMPLSHYGPLSFHNMFQPFFDMIHQAQQAMDVQLHSPALQFPDVDFLKEGEDDRTVCKEIRHNSTGCLKMKGQCEKCQE 306
Cdd:smart00035   1 NLMPFPQYWPLNFHDMFQPFFDMIHQAQQAMDTHLHRPPYQFPKQDFAEEHGDDRTVCKEIRHNSTGCLKMKDQCEKCQE 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679276  307 ILSVDCSTNNPAQANLRQELNDSLQVAERLTQQYNELLHSLQSKMLNTSSLLEQLNDQFSWVSQLANLTQGDDQ-YLRVS 385
Cdd:smart00035  81 ILSVDCSTNNPDQPQLRQELDESLQLAERFTQQYDQLLQSYQKKMLNTSSLLEQLNEQFGWVSQLANLTQGEDQyYLQVT 160
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1958679276  386 TVTTHSSDSEVPSRVTEVVVKLFDSDPITVVLPEEVSKDNPKFMDTVAEKALQEYR 441
Cdd:smart00035 161 TVPSHTSDSSVPSGTTKVVVKLFDSDPITLTIPEEVSADNPKFMETVAEKALQHYR 216
CLb smart00030
CLUSTERIN Beta chain;
22-226 1.61e-130

CLUSTERIN Beta chain;


Pssm-ID: 128345  Cd Length: 206  Bit Score: 374.93  E-value: 1.61e-130
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679276   22 EQEFSDNELQELSTQGSRYVNKEIQNAVQGVKHIKTLIEKTNAERKSLLNSLEEAKKKKEGALDDTRDSEMKLKAFPEVC 101
Cdd:smart00030   1 DKTVSDNELQEMSTQGSKYINKEIKNALKGVKQIKTLIEKTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQGVC 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679276  102 NETMMALWEECKPCLKHTCMKFYARVCRSGSGLVGRQLEEFLNQSSPFYFWMNGDRIDSLLESDRQQSQVLDAMQDSFTR 181
Cdd:smart00030  81 NETMMALWEECKPCLKQTCMKFYARVCRSGSGLVGRQLEEFLNQSSPFYFWMNGDRIDSLLENDRQQSHVLDVMEDSFSR 160
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 1958679276  182 ASGIIDTLFQDRFFTHEPQDIHHFSPMGFPHKR-PHFLYPKSRLVR 226
Cdd:smart00030 161 ASSIVDELFQDRFFTREPQDTTFYSPFSSPHRRtEPFFFPKSRLAR 206
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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