|
Name |
Accession |
Description |
Interval |
E-value |
| PACT_coil_coil |
pfam10495 |
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil ... |
2754-2832 |
1.02e-26 |
|
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil region close to the C-terminus of centrosomal proteins that is directly responsible for recruiting AKAP-450 and pericentrin to the centrosome. Hence the suggested name for this region is a PACT domain (pericentrin-AKAP-450 centrosomal targeting). This domain is also present at the C-terminus of coiled-coil proteins from Drosophila and S. pombe, and that from the Drosophila protein is sufficient for targeting to the centrosome in mammalian cells. The function of these proteins is unknown but they seem good candidates for having a centrosomal or spindle pole body location. The final 22 residues of this domain in AKAP-450 appear specifically to be a calmodulin-binding domain indicating that this member at least is likely to contribute to centrosome assembly.
Pssm-ID: 463115 Cd Length: 77 Bit Score: 105.37 E-value: 1.02e-26
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958758587 2754 YLRAESFRKALIYQKKYLLLLIGGFQDSEQETLSMIAHLGVFPSKADKKvtaSRPFTRFRTAVRVVIAVLRLRFLVKKW 2832
Cdd:pfam10495 2 LLREESFRKDLAYQKKYLLLLLGGYQACNKADLRLLAQMGVTPPDDRPS---RKPRRKLKSAALAVIAIARMKRLAREW 77
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
120-587 |
5.34e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.36 E-value: 5.34e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 120 LELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELMREQHAREKEEmaLRNEQE 199
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE--LEEAEE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 200 TAELKEKFRSEMEKTVQMMETLKQDWESERELCLETLRKELSAkhQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVS 279
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA--AAELAAQLEELEEAEEALLERLERLEEELEELEEA 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 280 LKNLEAQHQAAIRKLQEDLRSEhcQYLQDLELRFREKEKAKELELETLQASYEDLKAQSQEEIRHLWSQLEsMKTNREEQ 359
Cdd:COG1196 430 LAELEEEEEEEEEALEEAAEEE--AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE-AEADYEGF 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 360 NGSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHESELEHLRVYFEKKLNDAEKtyqedLTVFQQRLQEAREESLESAE 439
Cdd:COG1196 507 LEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAA-----AIEYLKAAKAGRATFLPLDK 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 440 ISSSCMFPEETSGRERKEPPDPLDLQLEQPKAQGSLIEDYQEKLSNAEEKIELMKQEFQKKEAEWELSREDlkRDAEEKL 519
Cdd:COG1196 582 IRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLE--GEGGSAG 659
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958758587 520 ASMFLELREKAESEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDEVLL 587
Cdd:COG1196 660 GSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1043-1434 |
5.01e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.40 E-value: 5.01e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1043 LSTAVEGLLDMALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKV 1122
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1123 EKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLwNQKETFTNEAKEREAGTPVSAGREDAALQKEV 1202
Cdd:TIGR02168 762 EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDEL-RAELTLLNEEAANLRERLESLERRIAATERRL 840
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1203 ESLTRdQWESRKQSEKDRATLLSQMRVLESELEDQLvqhrgcaqlaEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHE 1282
Cdd:TIGR02168 841 EDLEE-QIEELSEDIESLAAEIEELEELIEELESEL----------EALLNERASLEEALALLRSELEELSEELRELESK 909
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1283 REEFQQEIKWLEGQLRQAtrprppgprDSQCAKLDEEVELLQEKLREKldgfnelvikkdladqqlliQEEEIKHLEETN 1362
Cdd:TIGR02168 910 RSELRRELEELREKLAQL---------ELRLEGLEVRIDNLQERLSEE--------------------YSLTLEEAEALE 960
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958758587 1363 ENIQRQMAQLQEELEKQRRSTEELEVVNSRN-SEIEELKAIIEHLQENQEQLQKAKaeeiEQLHEVIEKLQSE 1434
Cdd:TIGR02168 961 NKIEDDEEEARRRLKRLENKIKELGPVNLAAiEEYEELKERYDFLTAQKEDLTEAK----ETLEEAIEEIDRE 1029
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1060-1564 |
1.80e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.35 E-value: 1.80e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1060 QLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQ 1139
Cdd:COG1196 275 ELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1140 QLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAGTpVSAGREDAALQKEVESLTRDQWESRKQSEKD 1219
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQL-EELEEAEEALLERLERLEEELEELEEALAEL 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1220 RATLLSQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQ 1299
Cdd:COG1196 434 EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAA 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1300 ATRPRPPGprDSQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQ 1379
Cdd:COG1196 514 LLLAGLRG--LAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAA 591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1380 RRSTEELEVVNSRNSEIEELKAIIEHLQENQ--EQLQKAKAEEIEQLHEVIEKLQSELSLmgptvhEMSDLPPGSLHTEl 1457
Cdd:COG1196 592 LARGAIGAAVDLVASDLREADARYYVLGDTLlgRTLVAARLEAALRRAVTLAGRLREVTL------EGEGGSAGGSLTG- 664
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1458 scLQAEGMGGQALHNELQAAQAAKGAFGQLLADHGHSQALEALQERLQDAEAAAARHLTELEhcvALRQAEVEAMASRIQ 1537
Cdd:COG1196 665 --GSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEE---ALEEQLEAEREELLE 739
|
490 500
....*....|....*....|....*..
gi 1958758587 1538 EFEATLKAKEAIIVQRDLEIDAVNKWK 1564
Cdd:COG1196 740 ELLEEEELLEEEALEELPEPPDLEELE 766
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
154-858 |
2.04e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 70.56 E-value: 2.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 154 ELREMLNGRRAQELALLQSRQQCElELMREQHAREKEEMalRNEQETAELKEKFRSEMEKTVQMMETLKQDWESERELCL 233
Cdd:PTZ00121 1138 DARKAEEARKAEDAKRVEIARKAE-DARKAEEARKAEDA--KKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKA 1214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 234 ETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAI-----RKLQEDLRSEHCQYLQD 308
Cdd:PTZ00121 1215 EEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIkaeeaRKADELKKAEEKKKADE 1294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 309 LElRFREKEKAKELELETLQASYEDLKAQSQEEIRhlwSQLESMKTNREEQNGSWEPLLAQAShleelqhlrsdfAQQQQ 388
Cdd:PTZ00121 1295 AK-KAEEKKKADEAKKKAEEAKKADEAKKKAEEAK---KKADAAKKKAEEAKKAAEAAKAEAE------------AAADE 1358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 389 QERAQHESELEHLRVYFEKKLNDAEKTYQEDLTVFQQRLQEAREESLESAEISSScmfpeetsgRERKEPPDPLDLQLEQ 468
Cdd:PTZ00121 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKA---------AAAKKKADEAKKKAEE 1429
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 469 PKAQGSLIEDYQEKLSNAEEKI---ELMKQEFQKKEAEWELSREDLKRDAEEKLASMflELREKAES--EKLSIINRFEL 543
Cdd:PTZ00121 1430 KKKADEAKKKAEEAKKADEAKKkaeEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD--EAKKKAEEakKKADEAKKAAE 1507
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 544 RESSMRHLQDQQAAQISDLERSLREQQG--HLRQLEQELTRDEVLLCSQCGKEPSVAQDEKSAillREKEDCALQLltaq 621
Cdd:PTZ00121 1508 AKKKADEAKKAEEAKKADEAKKAEEAKKadEAKKAEEKKKADELKKAEELKKAEEKKKAEEAK---KAEEDKNMAL---- 1580
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 622 nRFLEERKEIMEKFAKEQDAFLLDTQEKHSHELQLLQQGHQQQLLALRMELETKHHSELTEQLAslESKQQAllethvak 701
Cdd:PTZ00121 1581 -RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEA--EEKKKA-------- 1649
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 702 MQVKHDAEISALEKRHLSNLDELESCYVADIQTIRDEHKKALELLRAELEEqlQKKDSCHREILTQELEKL-KLKHAEEL 780
Cdd:PTZ00121 1650 EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE--AKKAEELKKKEAEEKKKAeELKKAEEE 1727
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958758587 781 qsvrNSLRVKMSAQHTESGKGPAADLQGAHQQKAPAMALHNEGHQLEEDGDAALGGADTEDLQHHAEPREREGPHTVE 858
Cdd:PTZ00121 1728 ----NKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIK 1801
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2084-2597 |
1.55e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.72 E-value: 1.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2084 YNSLVKKLEKVIQEQGDLQKVREHAclpdrSSLLAEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQV 2163
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEEL-----EAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2164 ELLAY---KVEQEKCIANDLQKTLSKEQEAASDVRKRLMVEQGAVQDLKSELHACKQENTNLLESLDKVQQEVLRLRYGH 2240
Cdd:COG1196 309 ERRREleeRLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2241 VTwSYSGTSSASAGRAVLDGKENELKVVLEELECERGKGQVLQAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNNQ 2320
Cdd:COG1196 389 LE-ALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2321 LCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELRKSLEAERSR---------SLELSEALQHERLLTEQLSRN 2391
Cdd:COG1196 468 LLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAglrglagavAVLIGVEAAYEAALEAALAAA 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2392 AQEACARQDTQAQHA--LLRKLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKE-------------- 2455
Cdd:COG1196 548 LQNIVVEDDEVAAAAieYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADAryyvlgdtllgrtl 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2456 VSGNLRSAVDALQTHKQELGCCL-------EREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRV 2528
Cdd:COG1196 628 VAARLEAALRRAVTLAGRLREVTlegeggsAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEER 707
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958758587 2529 KEKLRELELQRQRDEHKIEQLQRLVRELRWKEEAPGGNGPCRGSPCLGSLERDQFQEQQQELEKIRQQL 2597
Cdd:COG1196 708 ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2310-2562 |
1.75e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 1.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2310 SLEKQLAQNNQLCVALKHERaakdnlqKELQIEASRCEALLAQEKGQLSELRKSLEAERSRSLELSEAL----QHERLLT 2385
Cdd:TIGR02168 236 ELREELEELQEELKEAEEEL-------EELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEIsrleQQKQILR 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2386 EQLSRNAQEACARQDTQAQhaLLRKLKAEKARALELEAMLEKVQKQAAHTQQqleaqaqerclELRREKEVSGNLRSAVD 2465
Cdd:TIGR02168 309 ERLANLERQLEELEAQLEE--LESKLDELAEELAELEEKLEELKEELESLEA-----------ELEELEAELEELESRLE 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2466 ALQTHKQELGCCLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRVKEKL----RELELQRQR 2541
Cdd:TIGR02168 376 ELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELeeleEELEELQEE 455
|
250 260
....*....|....*....|.
gi 1958758587 2542 DEHKIEQLQRLVRELRWKEEA 2562
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQA 476
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
136-543 |
1.83e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 1.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 136 QLELTQANLQKeKETALTELREMLNGRRAQELALLQSRqqcelELMREQHAREKEEMALRNEQETAELkEKFRSEMEKTV 215
Cdd:TIGR02168 180 KLERTRENLDR-LEDILNELERQLKSLERQAEKAERYK-----ELKAELRELELALLVLRLEELREEL-EELQEELKEAE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 216 QMMETLkQDWESERELCLETLRKElsakhQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAIRKLQ 295
Cdd:TIGR02168 253 EELEEL-TAELQELEEKLEELRLE-----VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 296 EDLRSEHCQylqdlelrfREKEKAKELELETLQASYEDLKAQSQEEIRhlwsQLESMKTNREEQNgswepllaqashlEE 375
Cdd:TIGR02168 327 ELESKLDEL---------AEELAELEEKLEELKEELESLEAELEELEA----ELEELESRLEELE-------------EQ 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 376 LQHLRSDFAqQQQQERAQHESELEHLrvyfEKKLNDAEKTYQEdltvfQQRLQEAREESLESAEIssscmfpeetsgrer 455
Cdd:TIGR02168 381 LETLRSKVA-QLELQIASLNNEIERL----EARLERLEDRRER-----LQQEIEELLKKLEEAEL--------------- 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 456 keppDPLDLQLEQPKAQgslIEDYQEKLSNAEEKIELMKQEFQKKEAEWELSREDLKRDAEEK--LASMFLELREKAESE 533
Cdd:TIGR02168 436 ----KELQAELEELEEE---LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLdsLERLQENLEGFSEGV 508
|
410
....*....|
gi 1958758587 534 KLSIINRFEL 543
Cdd:TIGR02168 509 KALLKNQSGL 518
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
119-579 |
9.92e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 54.84 E-value: 9.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 119 SLELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQeLALLQSRQQCELELMREQHAREKEEMALRNEQ 198
Cdd:pfam12128 252 TLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQ-WKEKRDELNGELSAADAAVAKDRSELEALEDQ 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 199 ETAELKEkfrsEMEKTVQMMETLKQdWESERELcLETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEV 278
Cdd:pfam12128 331 HGAFLDA----DIETAAADQEQLPS-WQSELEN-LEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIRE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 279 SLKNLEAQHQAAIRKLQEDLRSEHCQYLQDL-ELRFREKEKAKELELETLQASY-EDLK---AQSQEEIRHLWSQLESMK 353
Cdd:pfam12128 405 ARDRQLAVAEDDLQALESELREQLEAGKLEFnEEEYRLKSRLGELKLRLNQATAtPELLlqlENFDERIERAREEQEAAN 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 354 TNREeqngSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHESELEHLrvyfekkLNDAEKTYQEDLTVFQQRLQEAREE 433
Cdd:pfam12128 485 AEVE----RLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQ-------LFPQAGTLLHFLRKEAPDWEQSIGK 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 434 SLESAEISSSCMFPEETSGR--------------ERKEPPDPLDL--QLEQPKAQ-GSLIEDYQEKLSNAEEKIELMKQE 496
Cdd:pfam12128 554 VISPELLHRTDLDPEVWDGSvggelnlygvkldlKRIDVPEWAASeeELRERLDKaEEALQSAREKQAAAEEQLVQANGE 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 497 FQKKEAEWELSREDLKrDAEEKLASMFLELREKAESEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQL 576
Cdd:pfam12128 634 LEKASREETFARTALK-NARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREA 712
|
...
gi 1958758587 577 EQE 579
Cdd:pfam12128 713 RTE 715
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
273-1165 |
1.41e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 1.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 273 KHEAEvslKNLEAQHQAAIRklQEDLRSEHCQYLQDLElrfREKEKAKEleletlqasYEDLKaqsqEEIRHLwsQLESM 352
Cdd:TIGR02168 174 RKETE---RKLERTRENLDR--LEDILNELERQLKSLE---RQAEKAER---------YKELK----AELREL--ELALL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 353 KTNREEQNGSWEPLLAQashLEELQHLRSDFAQQQQQERAQHEsELEHLRVYFEKKLNDAEKTYQE------DLTVFQQR 426
Cdd:TIGR02168 231 VLRLEELREELEELQEE---LKEAEEELEELTAELQELEEKLE-ELRLEVSELEEEIEELQKELYAlaneisRLEQQKQI 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 427 LQEAREESLESAEissscmfpeetsgrerkeppdPLDLQLEQPKAQgslIEDYQEKLSNAEEKIELMKQEFQKKEAEWEl 506
Cdd:TIGR02168 307 LRERLANLERQLE---------------------ELEAQLEELESK---LDELAEELAELEEKLEELKEELESLEAELE- 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 507 SREDLKRDAEEKLAsmflELREKAESEKLsiiNRFELRESsmrhlQDQQAAQISDLERSLREQQGHLRQLEQELtrdevl 586
Cdd:TIGR02168 362 ELEAELEELESRLE----ELEEQLETLRS---KVAQLELQ-----IASLNNEIERLEARLERLEDRRERLQQEI------ 423
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 587 lcSQCGKEPSVAQDEKSAILLREKEDCALQLLTAQNRFLEERKEIMEKFAKEQDAFLLDTQEKHSHELQLLQQGHQQQll 666
Cdd:TIGR02168 424 --EELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE-- 499
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 667 alrmeletkHHSELTEQLASLESKQQALLETH-VAKMQVKHDAEIS-----ALEKRHLSNLDELESCYVADIQTIRdEHK 740
Cdd:TIGR02168 500 ---------NLEGFSEGVKALLKNQSGLSGILgVLSELISVDEGYEaaieaALGGRLQAVVVENLNAAKKAIAFLK-QNE 569
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 741 KALELLRAELEEQLQKKDSCHREILTQELEKLKLkhAEELQSVRNSLRVKMSAqhTESGKGPAADLQGAHQQKAPAMALH 820
Cdd:TIGR02168 570 LGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGV--AKDLVKFDPKLRKALSY--LLGGVLVVDDLDNALELAKKLRPGY 645
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 821 N----EGHQLEEDGDAALGGADTEDLQHHAEPREREGPHTVEMQTSQTELAKpQELQASQDQGAQVRDQVFLLSRELEEC 896
Cdd:TIGR02168 646 RivtlDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELE-KALAELRKELEELEEELEQLRKELEEL 724
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 897 RGELEQLQQRRERENQEGATLicmlRADVDLAQSEGKALRDALRRLLDLFGETLKAAVTLKSRISERAGLLLDHEDAVDT 976
Cdd:TIGR02168 725 SRQISALRKDLARLEAEVEQL----EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 977 SGAQLAAAALgemwpdegllDIDRTLPEGAETSSVCEISSHVCESFFMSPENTQECEQPIRKVYQSLSTAVEGLLDMALD 1056
Cdd:TIGR02168 801 LREALDELRA----------ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEE 870
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1057 SSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEE 1136
Cdd:TIGR02168 871 LESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950
|
890 900 910
....*....|....*....|....*....|
gi 1958758587 1137 SEQQLIVELEDLR-KQLQQASRELLTLKEE 1165
Cdd:TIGR02168 951 LTLEEAEALENKIeDDEEEARRRLKRLENK 980
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
542-1159 |
3.36e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.02 E-value: 3.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 542 ELRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDEVLLcsqcgkepsvAQDEKSAILLREK-EDCALQLLTA 620
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAEL----------AELEAELEELRLElEELELELEEA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 621 QNRFLEERKEIMEkfakeqdaflLDTQEKHSHELQLLQQGHQQQLLALRMELEtKHHSELTEQLASLESKQQALLETHVA 700
Cdd:COG1196 287 QAEEYELLAELAR----------LEQDIARLEERRRELEERLEELEEELAELE-EELEELEEELEELEEELEEAEEELEE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 701 KMQVKHDAE--ISALEKRHLSNLDELESCYVADIQTIRDEHKKALELLRAELEEQLQKKDschREILTQELEKLKLKHAE 778
Cdd:COG1196 356 AEAELAEAEeaLLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER---LERLEEELEELEEALAE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 779 ELQSVRNSLRVKMSAQHTEsgkgpAADLQGAHQQKAPAMALHNEGHQLEEDGDAALGGADTEDLQHHAEPREREGPHtvE 858
Cdd:COG1196 433 LEEEEEEEEEALEEAAEEE-----AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE--G 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 859 MQTSQTELAKPQELQASQDQGAQVRDQVFLLSRELEECRGELEQLQQRRERENQEGAtlicmlrADVDLAQSEGKALRDA 938
Cdd:COG1196 506 FLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAA-------IEYLKAAKAGRATFLP 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 939 LRRLLDLFGETLKAAVTLKSRISERAGLLLDHEDAVDTSGAQLAAAALGEMWPDEGLLDIDRTLPEGAETSSvceisshv 1018
Cdd:COG1196 579 LDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVT-------- 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1019 cesffmspentqeceQPIRKVYQSLSTAVEGLLDMALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLRE 1098
Cdd:COG1196 651 ---------------LEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEE 715
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958758587 1099 ESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASREL 1159
Cdd:COG1196 716 RLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1059-1435 |
3.90e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.76 E-value: 3.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1059 KQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLA-----LELHTAEGLLEGFKVEKADLQEALGK 1133
Cdd:PRK03918 391 KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPvcgreLTEEHRKELLEEYTAELKRIEKELKE 470
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1134 KEESEQQLIVELEDLRKQLQQASR--ELLTLKEENSVLWNQKETFTNEAKEREAGTPVSAGREDAALQKEVESLTRDqWE 1211
Cdd:PRK03918 471 IEEKERKLRKELRELEKVLKKESEliKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKE-LE 549
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1212 SRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEvttlkqqlaTLDKHLRSQRQFMDE--QAAEREHEREEFQQE 1289
Cdd:PRK03918 550 KLEELKKKLAELEKKLDELEEELAELLKELEELGFESVE---------ELEERLKELEPFYNEylELKDAEKELEREEKE 620
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1290 IKWLEGQLRQATRprppgprdsQCAKLDEEVELLQEKLREKLDGFNE-----LVIKKDLADQQLLIQEEEIKHLEETNEN 1364
Cdd:PRK03918 621 LKKLEEELDKAFE---------ELAETEKRLEELRKELEELEKKYSEeeyeeLREEYLELSRELAGLRAELEELEKRREE 691
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958758587 1365 IQRQMAQLQEELEKQRRSTEELEVVNSRNSEIEELKaiiehlqenqEQLQKAKAEEIEQLHEVIEKLQSEL 1435
Cdd:PRK03918 692 IKKTLEKLKEELEEREKAKKELEKLEKALERVEELR----------EKVKKYKALLKERALSKVGEIASEI 752
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
486-1432 |
3.34e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.97 E-value: 3.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 486 AEEKIELMKQEFQKKEAEwELSREDLKRDAEEKLasmfLELREKAESEKLSIINRFELRESSMRHLQDQQAA----QISD 561
Cdd:pfam02463 143 KIEIIAMMKPERRLEIEE-EAAGSRLKRKKKEAL----KKLIEETENLAELIIDLEELKLQELKLKEQAKKAleyyQLKE 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 562 LERSLREQQGHLRQLEQELTRDEVLLcsqcGKEPSVAQDEKSAILLREKEDCALQLLTAQNRFLEERKEIMEKFAKEQDA 641
Cdd:pfam02463 218 KLELEEEYLLYLDYLKLNEERIDLLQ----ELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAK 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 642 FLldtQEKHSHELQLLQQGHQQQLLALRMELETKHHSELTEQLASLESKQQALLETHVAKMQvKHDAEISALEKRHLSNL 721
Cdd:pfam02463 294 EE---EELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKRE-AEEEEEEELEKLQEKLE 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 722 DELEscyvaDIQTIRDEHKKALELLRAELEEQLQKKDSCHREILTQ-ELEKLKLKHAEELQSVRNSLrvkmsaqhtESGK 800
Cdd:pfam02463 370 QLEE-----ELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLlELARQLEDLLKEEKKEELEI---------LEEE 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 801 GPAADLQGAHQQKApamalhneghQLEEDGDAALGGADTEDLQHHAEPREREGPHTVEMQTSQTELAKPQELQASQDQGA 880
Cdd:pfam02463 436 EESIELKQGKLTEE----------KEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKA 505
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 881 QVRDQVFLLSRELEEcrGELEQLQQRRERENQEGATLICMLRADVDLAQSEGKALRDALRRLLDLFGETLKAAVTLKSRI 960
Cdd:pfam02463 506 RSGLKVLLALIKDGV--GGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLL 583
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 961 SERAGLLLDHeDAVDTSGAQLAAAALGEMWPDEGLLDIDRTLPEGAEtSSVCEISSHVCESFFMSPENTQECEQPIRKVY 1040
Cdd:pfam02463 584 IPKLKLPLKS-IAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGIL-KDTELTKLKESAKAKESGLRKGVSLEEGLAEK 661
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1041 QSLSTAVEGLLDMALDSSKQLEDARQLHRcvEKEFRHRDEEMAQAVQKQQELLERLREEsaAKDRLALELHTAEGLLEG- 1119
Cdd:pfam02463 662 SEVKASLSELTKELLEIQELQEKAESELA--KEEILRRQLEIKKKEQREKEELKKLKLE--AEELLADRVQEAQDKINEe 737
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1120 FKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAGTPVSAGREDAALQ 1199
Cdd:pfam02463 738 LKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELL 817
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1200 KEVESLtrdqwesRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAER 1279
Cdd:pfam02463 818 EEEQLL-------IEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELES 890
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1280 EHEREEFQQEIKWLEGQlrqatrprppgpRDSQCAKLDEEVELLQEKLREKLDGFNELviKKDLADQQLLIQEEEIKHLE 1359
Cdd:pfam02463 891 KEEKEKEEKKELEEESQ------------KLNLLEEKENEIEERIKEEAEILLKYEEE--PEELLLEEADEKEKEENNKE 956
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958758587 1360 ETNENIQRQMAQLQEELEKQRRSTEELEVVNSRNSEIEElkaiiehlqenqeQLQKAKAEEIEQLHEVIEKLQ 1432
Cdd:pfam02463 957 EEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDEL-------------EKERLEEEKKKLIRAIIEETC 1016
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1340-1562 |
3.80e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 3.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1340 KKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELE-VVNSRNSEIEELKAIIEHLQENQEQLQKAKA 1418
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALArRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1419 EEIEQLHEVIEKLQselsLMGPTVHEMSDLPPGSLHTELSCLQAEGMGGQALHNELQAAQAAKGAFGQLladhghSQALE 1498
Cdd:COG4942 101 AQKEELAELLRALY----RLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAL------RAELE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958758587 1499 ALQERLQDAEAAAARHLTELEHCVALRQAEVEAMASRIQEFEATLKAKEAIIVQRDLEIDAVNK 1562
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
234-534 |
3.84e-05 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 49.24 E-value: 3.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 234 ETLRKELSAKHQSEMEGLQNQFQKELSEQKaelekifqaKHEAEVSLKNLEAQHQAAIRKlQEDLRSEHCQYLQDLELRF 313
Cdd:NF033838 109 EKSEAELTSKTKKELDAAFEQFKKDTLEPG---------KKVAEATKKVEEAEKKAKDQK-EEDRRNYPTNTYKTLELEI 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 314 REKE-KAKELELETLQAsyEDLKAQSQEEIRHLWSQLESMKtnreeqngswepllAQASHLEELQHLRsdfaqqqqqERA 392
Cdd:NF033838 179 AESDvEVKKAELELVKE--EAKEPRDEEKIKQAKAKVESKK--------------AEATRLEKIKTDR---------EKA 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 393 QHESEL---EHLRVYFEKKLNDAEKTYQEDLTVFQQRLQEAREESLESAEISSSCMFPEETsgrerkePPDPlDLQLEQP 469
Cdd:NF033838 234 EEEAKRradAKLKEAVEKNVATSEQDKPKRRAKRGVLGEPATPDKKENDAKSSDSSVGEET-------LPSP-SLKPEKK 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 470 KAQGS-LIEDYQEKLSNAEEK--------------IELMKQEFQKKEAEWELSREDLKRDA-EEKLAsmflELREKAESE 533
Cdd:NF033838 306 VAEAEkKVEEAKKKAKDQKEEdrrnyptntyktleLEIAESDVKVKEAELELVKEEAKEPRnEEKIK----QAKAKVESK 381
|
.
gi 1958758587 534 K 534
Cdd:NF033838 382 K 382
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2087-2562 |
4.46e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.37 E-value: 4.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2087 LVKKLEKVIQEQGDLQKVREHAclpDRSSLLAEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELL 2166
Cdd:PTZ00121 1320 AKKKAEEAKKKADAAKKKAEEA---KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2167 AYKVEQEKCIANDLQKTLSKEQEA------ASDVRKRLMVEQGAVQDLKSELHACKQENTNLLESLDKVQQEVLRlrygh 2240
Cdd:PTZ00121 1397 KKKAEEDKKKADELKKAAAAKKKAdeakkkAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK----- 1471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2241 vtwsysgtSSASAGRAVLDGKENELKVVLEElecERGKGQVLQAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNnq 2320
Cdd:PTZ00121 1472 --------ADEAKKKAEEAKKADEAKKKAEE---AKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADE-- 1538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2321 lcvALKHERAAKDNLQKELQiEASRCEALLAQEKGQLSELRKSL---EAERSRSLELSEALQHERLLTEQLSRNAQEACA 2397
Cdd:PTZ00121 1539 ---AKKAEEKKKADELKKAE-ELKKAEEKKKAEEAKKAEEDKNMalrKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKK 1614
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2398 RQDTQAQHALLRKLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKEVSGNLRSAVDALQTHKQELGCC 2477
Cdd:PTZ00121 1615 AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL 1694
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2478 LEREREKAAWLQAELEQLSARVKQQEARQDEK----RMDRRSSREDLDKRKwqrvKEKLRELELQRQRDEHKIEQLQRLV 2553
Cdd:PTZ00121 1695 KKEAEEAKKAEELKKKEAEEKKKAEELKKAEEenkiKAEEAKKEAEEDKKK----AEEAKKDEEEKKKIAHLKKEEEKKA 1770
|
....*....
gi 1958758587 2554 RELRWKEEA 2562
Cdd:PTZ00121 1771 EEIRKEKEA 1779
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1087-1411 |
5.69e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.97 E-value: 5.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1087 QKQQELLERLREES--AAKDRLALELHTAEGLLEGFKVEKADL---------QEALGKKEESEQQLIvELEDLRKQLQQA 1155
Cdd:pfam17380 287 RQQQEKFEKMEQERlrQEKEEKAREVERRRKLEEAEKARQAEMdrqaaiyaeQERMAMERERELERI-RQEERKRELERI 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1156 SRELLTLkEENSVLWNQKETFTNEAKEREAGTPVSAGREDAALQKE----VESLTRDQWESRKQSEKDRATllsQMRVLE 1231
Cdd:pfam17380 366 RQEEIAM-EISRMRELERLQMERQQKNERVRQELEAARKVKILEEErqrkIQQQKVEMEQIRAEQEEARQR---EVRRLE 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1232 SELEDQLVQHRgcaqlaEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRprppgprds 1311
Cdd:pfam17380 442 EERAREMERVR------LEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQ--------- 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1312 qcakldeevELLQEKLREKLdgfnelvIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNS 1391
Cdd:pfam17380 507 ---------AMIEEERKRKL-------LEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEA 570
|
330 340
....*....|....*....|
gi 1958758587 1392 RNSEIEELKAIIEHLQENQE 1411
Cdd:pfam17380 571 MEREREMMRQIVESEKARAE 590
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
2319-2562 |
1.90e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.04 E-value: 1.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2319 NQLCVALKHERAAKDNLQKElQIEASRCEALLAQEKGQLSEL---RKSLEAERSRSLELSEAL----QHERLLTE---QL 2388
Cdd:pfam17380 272 NQLLHIVQHQKAVSERQQQE-KFEKMEQERLRQEKEEKAREVerrRKLEEAEKARQAEMDRQAaiyaEQERMAMErerEL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2389 SRNAQEACARQDTQAQHallRKLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKEVSGNLRSAV---- 2464
Cdd:pfam17380 351 ERIRQEERKRELERIRQ---EEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEqira 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2465 ---DALQTHKQELGCCLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRVKEKLRELELQRQR 2541
Cdd:pfam17380 428 eqeEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQA 507
|
250 260
....*....|....*....|.
gi 1958758587 2542 DEHKIEQLQRLVRELRWKEEA 2562
Cdd:pfam17380 508 MIEEERKRKLLEKEMEERQKA 528
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
1314-1434 |
1.81e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 43.08 E-value: 1.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1314 AKLDEEVELLQE---KLREKLDGFN-ELVIKKDLA------DQQLL-IQEEEIKHLEETNENIQRQMAQLQEELEkqrrs 1382
Cdd:smart00787 161 KLLMKELELLNSikpKLRDRKDALEeELRQLKQLEdeledcDPTELdRAKEKLKKLLQEIMIKVKKLEELEEELQ----- 235
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1958758587 1383 teELE-VVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSE 1434
Cdd:smart00787 236 --ELEsKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286
|
|
| GBP_C |
cd16269 |
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ... |
198-345 |
2.48e-03 |
|
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines.
Pssm-ID: 293879 [Multi-domain] Cd Length: 291 Bit Score: 42.56 E-value: 2.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 198 QETAELKEKFRSEMEKTVQMMETLKQDWESeRELCLETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKifQAKHEAE 277
Cdd:cd16269 149 EDREKLVEKYRQVPRKGVKAEEVLQEFLQS-KEAEAEAILQADQALTEKEKEIEAERAKAEAAEQERKLLE--EQQRELE 225
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 278 VSLKNLEAQHQAAIRKLQEDLRSEHCQYLQDLE--LRFREKEKAKELELETLQASyedlkAQSQEEIRHL 345
Cdd:cd16269 226 QKLEDQERSYEEHLRQLKEKMEEERENLLKEQEraLESKLKEQEALLEEGFKEQA-----ELLQEEIRSL 290
|
|
| BspD6I-like |
cd22316 |
nicking endonuclease Nt.BspD6I and similar endonucleases; Heterodimeric type II restriction ... |
1314-1434 |
3.35e-03 |
|
nicking endonuclease Nt.BspD6I and similar endonucleases; Heterodimeric type II restriction endonuclease nicking endonuclease BspD6I recognizes a pseudosymmetric DNA sequence (5'-GAGTC) and cuts both strands outside the recognition motif 4 nucleotides downstream. It forms the large subunit in a heterodimeric arrangement. This catalytic domain/subunit belongs to a superfamily of PDDEXK nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI.
Pssm-ID: 411720 Cd Length: 345 Bit Score: 42.67 E-value: 3.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1314 AKLDEEVELLQEKLREKLDGFNELVIKKDLADqqlliqeeeIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNS-- 1391
Cdd:cd22316 38 EKKVEVEEILSNVERKPIFFDSDDDYLEYLFN---------PALPPLDNDDKANLVLELLRIRLKERGILIKISSKPLlt 108
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1958758587 1392 ---RNSEIEELKAIIEHLQENQeqLQKAKAEEIEQLHEVIEKLQSE 1434
Cdd:cd22316 109 padLNIIRKELENKLKKLREKK--YAKRQAEDWEEILEYFDLIENR 152
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PACT_coil_coil |
pfam10495 |
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil ... |
2754-2832 |
1.02e-26 |
|
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil region close to the C-terminus of centrosomal proteins that is directly responsible for recruiting AKAP-450 and pericentrin to the centrosome. Hence the suggested name for this region is a PACT domain (pericentrin-AKAP-450 centrosomal targeting). This domain is also present at the C-terminus of coiled-coil proteins from Drosophila and S. pombe, and that from the Drosophila protein is sufficient for targeting to the centrosome in mammalian cells. The function of these proteins is unknown but they seem good candidates for having a centrosomal or spindle pole body location. The final 22 residues of this domain in AKAP-450 appear specifically to be a calmodulin-binding domain indicating that this member at least is likely to contribute to centrosome assembly.
Pssm-ID: 463115 Cd Length: 77 Bit Score: 105.37 E-value: 1.02e-26
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958758587 2754 YLRAESFRKALIYQKKYLLLLIGGFQDSEQETLSMIAHLGVFPSKADKKvtaSRPFTRFRTAVRVVIAVLRLRFLVKKW 2832
Cdd:pfam10495 2 LLREESFRKDLAYQKKYLLLLLGGYQACNKADLRLLAQMGVTPPDDRPS---RKPRRKLKSAALAVIAIARMKRLAREW 77
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
120-587 |
5.34e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.36 E-value: 5.34e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 120 LELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELMREQHAREKEEmaLRNEQE 199
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE--LEEAEE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 200 TAELKEKFRSEMEKTVQMMETLKQDWESERELCLETLRKELSAkhQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVS 279
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA--AAELAAQLEELEEAEEALLERLERLEEELEELEEA 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 280 LKNLEAQHQAAIRKLQEDLRSEhcQYLQDLELRFREKEKAKELELETLQASYEDLKAQSQEEIRHLWSQLEsMKTNREEQ 359
Cdd:COG1196 430 LAELEEEEEEEEEALEEAAEEE--AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE-AEADYEGF 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 360 NGSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHESELEHLRVYFEKKLNDAEKtyqedLTVFQQRLQEAREESLESAE 439
Cdd:COG1196 507 LEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAA-----AIEYLKAAKAGRATFLPLDK 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 440 ISSSCMFPEETSGRERKEPPDPLDLQLEQPKAQGSLIEDYQEKLSNAEEKIELMKQEFQKKEAEWELSREDlkRDAEEKL 519
Cdd:COG1196 582 IRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLE--GEGGSAG 659
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958758587 520 ASMFLELREKAESEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDEVLL 587
Cdd:COG1196 660 GSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1043-1434 |
5.01e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.40 E-value: 5.01e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1043 LSTAVEGLLDMALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKV 1122
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1123 EKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLwNQKETFTNEAKEREAGTPVSAGREDAALQKEV 1202
Cdd:TIGR02168 762 EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDEL-RAELTLLNEEAANLRERLESLERRIAATERRL 840
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1203 ESLTRdQWESRKQSEKDRATLLSQMRVLESELEDQLvqhrgcaqlaEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHE 1282
Cdd:TIGR02168 841 EDLEE-QIEELSEDIESLAAEIEELEELIEELESEL----------EALLNERASLEEALALLRSELEELSEELRELESK 909
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1283 REEFQQEIKWLEGQLRQAtrprppgprDSQCAKLDEEVELLQEKLREKldgfnelvikkdladqqlliQEEEIKHLEETN 1362
Cdd:TIGR02168 910 RSELRRELEELREKLAQL---------ELRLEGLEVRIDNLQERLSEE--------------------YSLTLEEAEALE 960
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958758587 1363 ENIQRQMAQLQEELEKQRRSTEELEVVNSRN-SEIEELKAIIEHLQENQEQLQKAKaeeiEQLHEVIEKLQSE 1434
Cdd:TIGR02168 961 NKIEDDEEEARRRLKRLENKIKELGPVNLAAiEEYEELKERYDFLTAQKEDLTEAK----ETLEEAIEEIDRE 1029
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
144-716 |
1.80e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.35 E-value: 1.80e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 144 LQKEKETAL--TELREMLNGRRAQELALLQSRQQCELELMREQHAREKEEMAlRNEQETAELKEKFRSEMEKTVQMMETL 221
Cdd:COG1196 205 LERQAEKAEryRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELE-ELEAELAELEAELEELRLELEELELEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 222 KQDWESERELCLETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAIRKLQEDLRSE 301
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 302 HCQYLQDLELRFREKEKAKELELETLQAsyEDLKAQSQEEIRHLWSQLESMKTNREEQNGSWEPLLAQASHLEELQHLRS 381
Cdd:COG1196 364 EEALLEAEAELAEAEEELEELAEELLEA--LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 382 DFAQQQQQERAQHESELEHLRVYFEKKLNDAEKTYQEDLTVFQQRLQEAREESLESAEISSSCMFPEETSGRERKEPPDP 461
Cdd:COG1196 442 EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 462 LDLQLEQPKAQGSLIEDYQEKLSNAEEKIELMKQEFQKKEAEWELSREDLKRDAEEKLASMFLELREKAESEKLSIINRF 541
Cdd:COG1196 522 LAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAV 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 542 ELRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDEVLLCSQCGKEpsVAQDEKSAILLREKEDCALQLLTAQ 621
Cdd:COG1196 602 DLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE--GGSAGGSLTGGSRRELLAALLEAEA 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 622 NRFLEERKEIMEKFAKEQDAFLLDTQEKHSHELQLLQQGHQQQLLALRMELETKHHSELTEQLASLESKQQALLETHVAK 701
Cdd:COG1196 680 ELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEP 759
|
570
....*....|....*.
gi 1958758587 702 MQV-KHDAEISALEKR 716
Cdd:COG1196 760 PDLeELERELERLERE 775
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1060-1564 |
1.80e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.35 E-value: 1.80e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1060 QLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQ 1139
Cdd:COG1196 275 ELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1140 QLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAGTpVSAGREDAALQKEVESLTRDQWESRKQSEKD 1219
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQL-EELEEAEEALLERLERLEEELEELEEALAEL 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1220 RATLLSQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQ 1299
Cdd:COG1196 434 EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAA 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1300 ATRPRPPGprDSQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQ 1379
Cdd:COG1196 514 LLLAGLRG--LAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAA 591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1380 RRSTEELEVVNSRNSEIEELKAIIEHLQENQ--EQLQKAKAEEIEQLHEVIEKLQSELSLmgptvhEMSDLPPGSLHTEl 1457
Cdd:COG1196 592 LARGAIGAAVDLVASDLREADARYYVLGDTLlgRTLVAARLEAALRRAVTLAGRLREVTL------EGEGGSAGGSLTG- 664
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1458 scLQAEGMGGQALHNELQAAQAAKGAFGQLLADHGHSQALEALQERLQDAEAAAARHLTELEhcvALRQAEVEAMASRIQ 1537
Cdd:COG1196 665 --GSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEE---ALEEQLEAEREELLE 739
|
490 500
....*....|....*....|....*..
gi 1958758587 1538 EFEATLKAKEAIIVQRDLEIDAVNKWK 1564
Cdd:COG1196 740 ELLEEEELLEEEALEELPEPPDLEELE 766
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
154-858 |
2.04e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 70.56 E-value: 2.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 154 ELREMLNGRRAQELALLQSRQQCElELMREQHAREKEEMalRNEQETAELKEKFRSEMEKTVQMMETLKQDWESERELCL 233
Cdd:PTZ00121 1138 DARKAEEARKAEDAKRVEIARKAE-DARKAEEARKAEDA--KKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKA 1214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 234 ETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAI-----RKLQEDLRSEHCQYLQD 308
Cdd:PTZ00121 1215 EEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIkaeeaRKADELKKAEEKKKADE 1294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 309 LElRFREKEKAKELELETLQASYEDLKAQSQEEIRhlwSQLESMKTNREEQNGSWEPLLAQAShleelqhlrsdfAQQQQ 388
Cdd:PTZ00121 1295 AK-KAEEKKKADEAKKKAEEAKKADEAKKKAEEAK---KKADAAKKKAEEAKKAAEAAKAEAE------------AAADE 1358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 389 QERAQHESELEHLRVYFEKKLNDAEKTYQEDLTVFQQRLQEAREESLESAEISSScmfpeetsgRERKEPPDPLDLQLEQ 468
Cdd:PTZ00121 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKA---------AAAKKKADEAKKKAEE 1429
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 469 PKAQGSLIEDYQEKLSNAEEKI---ELMKQEFQKKEAEWELSREDLKRDAEEKLASMflELREKAES--EKLSIINRFEL 543
Cdd:PTZ00121 1430 KKKADEAKKKAEEAKKADEAKKkaeEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD--EAKKKAEEakKKADEAKKAAE 1507
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 544 RESSMRHLQDQQAAQISDLERSLREQQG--HLRQLEQELTRDEVLLCSQCGKEPSVAQDEKSAillREKEDCALQLltaq 621
Cdd:PTZ00121 1508 AKKKADEAKKAEEAKKADEAKKAEEAKKadEAKKAEEKKKADELKKAEELKKAEEKKKAEEAK---KAEEDKNMAL---- 1580
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 622 nRFLEERKEIMEKFAKEQDAFLLDTQEKHSHELQLLQQGHQQQLLALRMELETKHHSELTEQLAslESKQQAllethvak 701
Cdd:PTZ00121 1581 -RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEA--EEKKKA-------- 1649
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 702 MQVKHDAEISALEKRHLSNLDELESCYVADIQTIRDEHKKALELLRAELEEqlQKKDSCHREILTQELEKL-KLKHAEEL 780
Cdd:PTZ00121 1650 EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE--AKKAEELKKKEAEEKKKAeELKKAEEE 1727
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958758587 781 qsvrNSLRVKMSAQHTESGKGPAADLQGAHQQKAPAMALHNEGHQLEEDGDAALGGADTEDLQHHAEPREREGPHTVE 858
Cdd:PTZ00121 1728 ----NKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIK 1801
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1230-1559 |
1.38e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.27 E-value: 1.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1230 LESELEDQLVQHRGCAQLAEEVTTLKQQLATLDKHLRS-QRQFMDEQAAEREHEREEFQQEIKWLEGQLRQatrprppgp 1308
Cdd:COG1196 194 ILGELERQLEPLERQAEKAERYRELKEELKELEAELLLlKLRELEAELEELEAELEELEAELEELEAELAE--------- 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1309 rdsqcakLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEV 1388
Cdd:COG1196 265 -------LEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1389 VNSR-NSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSELSlmgptvhemsdlppgslhTELSCLQAEGMGG 1467
Cdd:COG1196 338 ELEElEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAE------------------ELLEALRAAAELA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1468 QALHNELQAAQAAKGAFGQLLADhghSQALEALQERLQDAEAAAARHLTELEHCVALRQAEVEAMASRIQEFEATLKAKE 1547
Cdd:COG1196 400 AQLEELEEAEEALLERLERLEEE---LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE 476
|
330
....*....|..
gi 1958758587 1548 AIIVQRDLEIDA 1559
Cdd:COG1196 477 AALAELLEELAE 488
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1059-1557 |
1.41e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.27 E-value: 1.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1059 KQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESE 1138
Cdd:COG1196 246 AELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEEL 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1139 QQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREagtpvsagREDAALQKEVESLTRDQWESRKQSEK 1218
Cdd:COG1196 326 AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE--------AELAEAEEELEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1219 DRATLLSQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLR 1298
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1299 QATRPRPPgprdsqcAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIkhleetneniqrQMAQLQEELEK 1378
Cdd:COG1196 478 ALAELLEE-------LAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVA------------VLIGVEAAYEA 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1379 QRRSTEELEVVNSRNSEIEELKAIIEHLQENQ---------EQLQKAKAEEIEQLHEVIEKLQSELSLMGPTVHEMSDLP 1449
Cdd:COG1196 539 ALEAALAAALQNIVVEDDEVAAAAIEYLKAAKagratflplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVL 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1450 PGSLHTELSCLQAEGMGGQAL------HNELQAAQAAKGAFGQLLADHGHSQALEALQERLQDAEAAAARHLTELEHCVA 1523
Cdd:COG1196 619 GDTLLGRTLVAARLEAALRRAvtlagrLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEA 698
|
490 500 510
....*....|....*....|....*....|....
gi 1958758587 1524 LRQAEVEAMASRIQEFEATLKAKEAIIVQRDLEI 1557
Cdd:COG1196 699 LLAEEEEERELAEAEEERLEEELEEEALEEQLEA 732
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1080-1431 |
2.63e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 66.63 E-value: 2.63e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1080 EEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQlivELEDLRKQLQQASREL 1159
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKE---RLEELEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1160 LTLKEEnsvlwnqKETFTNEAKEREAgtpvsagrEDAALQKEVESLTRDQWESRKQS--------EKDRATLLSQMRVLE 1231
Cdd:TIGR02169 754 ENVKSE-------LKELEARIEELEE--------DLHKLEEALNDLEARLSHSRIPEiqaelsklEEEVSRIEARLREIE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1232 SELEDQlvqHRGCAQLAEEVTTLKQQLATLDkhlrSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQAtrprppgprDS 1311
Cdd:TIGR02169 819 QKLNRL---TLEKEYLEKEIQELQEQRIDLK----EQIKSIEKEIENLNGKKEELEEELEELEAALRDL---------ES 882
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1312 QCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLL-------IQEEEIKHLEETNENIQRQMA------QLQEELEK 1378
Cdd:TIGR02169 883 RLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSelkakleALEEELSEIEDPKGEDEEIPEeelsleDVQAELQR 962
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1958758587 1379 QRRSTEELEVVNsrNSEIEELKAIIEHLQENQEQLQKAKAEEiEQLHEVIEKL 1431
Cdd:TIGR02169 963 VEEEIRALEPVN--MLAIQEYEEVLKRLDELKEKRAKLEEER-KAILERIEEY 1012
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
135-648 |
2.43e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.62 E-value: 2.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 135 AQLELTQANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELMREQHAREKEEMALRNEQ---ETAELKEKF---- 207
Cdd:PTZ00121 1263 AHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEakkKADAAKKKAeeak 1342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 208 ------RSEMEKTVQMMETLKQDWESERELCLETLRKELSAKHQSEMEGLQNQFQKELSEQK----------AELEKIFQ 271
Cdd:PTZ00121 1343 kaaeaaKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKkkadelkkaaAAKKKADE 1422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 272 AKHEAEVSLKNLEAQHQAAIRKLQEDLR--SEHCQYLQDLELRFREKEKAKELELETLQASYEDLKAQSQEEIRHLWSQL 349
Cdd:PTZ00121 1423 AKKKAEEKKKADEAKKKAEEAKKADEAKkkAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEA 1502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 350 ---ESMKTNREEQNGSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHESELEHLRVYFEKKLNDAEKTYQEDLTVFQQR 426
Cdd:PTZ00121 1503 kkaAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK 1582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 427 LQEAREESLESAEISSSCMFPEETSGRERKEPPDPLDLQLEQ-PKAQGSLIEDYQEKLSNAEEKIElmKQEFQKKEAEWE 505
Cdd:PTZ00121 1583 AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEElKKAEEEKKKVEQLKKKEAEEKKK--AEELKKAEEENK 1660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 506 LSREDLKR-DAEEKLASMFLELREKAESEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDE 584
Cdd:PTZ00121 1661 IKAAEEAKkAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAE 1740
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958758587 585 VLlcSQCGKEPSVAQDEKSAI--LLREKEDCALQLLTAQNRFLEER-KEIMEKFAKEQDAFLLDTQE 648
Cdd:PTZ00121 1741 ED--KKKAEEAKKDEEEKKKIahLKKEEEKKAEEIRKEKEAVIEEElDEEDEKRRMEVDKKIKDIFD 1805
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
870-1440 |
4.08e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.65 E-value: 4.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 870 QELQASQDQGAQVRDQVFLLSRELEECRGELEQLQQRRERENQEGATLicmlRADVDLAQSEGKALRDALRRLLDLFGET 949
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEA----QAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 950 LKAAVTLKSRISERAGLLLDHEDAVDTSGAQLAAAALGEMWPDEGLLDIDRTLPEgaetssvceisshvcesffmspent 1029
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE------------------------- 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1030 qeceqpIRKVYQSLSTAVEGLLDMALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALE 1109
Cdd:COG1196 370 ------AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1110 LHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAGTPV 1189
Cdd:COG1196 444 LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1190 SAGREDAALQKEVESLTRDqwesrkqsekdRATLLSQMRVLESELEDQLVQHRGCAQLAEEVTTL------KQQLATLDK 1263
Cdd:COG1196 524 GAVAVLIGVEAAYEAALEA-----------ALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLpldkirARAALAAAL 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1264 HLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRPRPPGPRDSQCAKLDEEVELLQEKLREKLDGFNELVIKKDL 1343
Cdd:COG1196 593 ARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLA 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1344 ADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEE--- 1420
Cdd:COG1196 673 ALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEeea 752
|
570 580
....*....|....*....|....*....
gi 1958758587 1421 ---------IEQLHEVIEKLQSELSLMGP 1440
Cdd:COG1196 753 leelpeppdLEELERELERLEREIEALGP 781
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
208-917 |
7.43e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.08 E-value: 7.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 208 RSEMEKTVQMMETLKqdwESERELCLETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQH 287
Cdd:PTZ00121 1059 KAEAKAHVGQDEGLK---PSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARK 1135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 288 QAAIRKLQEDLRSEHCQYLQDLelrfREKEKAKELELetlqasyedlkAQSQEEIRHLWSQLESMKTNREEQngsweplL 367
Cdd:PTZ00121 1136 AEDARKAEEARKAEDAKRVEIA----RKAEDARKAEE-----------ARKAEDAKKAEAARKAEEVRKAEE-------L 1193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 368 AQASHLEELQHLRsdfaqqqqqeRAQHESELEHLRVYFEKKLNDAEKTYQEdltvFQQRLQEAREESLESAEISSSCMFP 447
Cdd:PTZ00121 1194 RKAEDARKAEAAR----------KAEEERKAEEARKAEDAKKAEAVKKAEE----AKKDAEEAKKAEEERNNEEIRKFEE 1259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 448 EETSGRERKEPPDPLDlqlEQPKAQGSLIEDYQEKLSNAEEKIELMKQEFQKKEAEWELSREDLKRDAEE--KLASmflE 525
Cdd:PTZ00121 1260 ARMAHFARRQAAIKAE---EARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEakKKAD---A 1333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 526 LREKAE-SEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDEVLLCSQCGKEPSVAQDEKSA 604
Cdd:PTZ00121 1334 AKKKAEeAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKA 1413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 605 ILLREKEDcALQLLTAQNRFLEERKEIMEKfAKEQDAFLLDTQEKHSHELQLLQQGHQQQLLALRMELETKHHSELTEQL 684
Cdd:PTZ00121 1414 AAAKKKAD-EAKKKAEEKKKADEAKKKAEE-AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKK 1491
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 685 ASlESKQQALLETHVAKMQVKHDAEISALEKRHLSNLDELESCYVADIQTIRDEHKKALELLRAELEEQLQKKDSCHREI 764
Cdd:PTZ00121 1492 AE-EAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAK 1570
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 765 LTQELEKLKLKHAEELQSVRNSLRVKMSAQHTESGKGPAADLQGAHQQKAPAMALHNEghQLEEDGDAALGGADTEDLQH 844
Cdd:PTZ00121 1571 KAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA--EEEKKKVEQLKKKEAEEKKK 1648
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958758587 845 HAEPREREGPHTV----EMQTSQTELAKPQELQASQDQGAQVRDQvflLSRELEECRgELEQLQQRRERENQEGATL 917
Cdd:PTZ00121 1649 AEELKKAEEENKIkaaeEAKKAEEDKKKAEEAKKAEEDEKKAAEA---LKKEAEEAK-KAEELKKKEAEEKKKAEEL 1721
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1121-1435 |
7.69e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.61 E-value: 7.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1121 KVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLwNQKETFTNEAKEREAGTPVSAGREDAALQK 1200
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL-SRQISALRKDLARLEAEVEQLEERIAQLSK 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1201 EVESLTRDQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAERE 1280
Cdd:TIGR02168 755 ELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1281 HEreefQQEIKWLEGQLRQATrprppgprdSQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEE 1360
Cdd:TIGR02168 835 AT----ERRLEDLEEQIEELS---------EDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSE 901
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958758587 1361 TNENIQRQMAQLQEELEKQRRSTEELEVvnsrnsEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSEL 1435
Cdd:TIGR02168 902 ELRELESKRSELRRELEELREKLAQLEL------RLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEA 970
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1093-1565 |
8.23e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 8.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1093 LERLREEsAAKDRLALELHTAEGLLEG--FKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENsvlw 1170
Cdd:COG1196 202 LEPLERQ-AEKAERYRELKEELKELEAelLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLEL---- 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1171 NQKETFTNEAKEREAgtpvSAGREDAALQKEVESLTrdqwESRKQSEKDRATLLSQMRVLESELEdqlvqhrgcaQLAEE 1250
Cdd:COG1196 277 EELELELEEAQAEEY----ELLAELARLEQDIARLE----ERRRELEERLEELEEELAELEEELE----------ELEEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1251 VTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIkwlegqlrqatrprppgprdsqcAKLDEEVELLQEKLREk 1330
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE-----------------------EELEELAEELLEALRA- 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1331 ldgfnELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQ 1410
Cdd:COG1196 395 -----AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELL 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1411 EQLQKAKAEEIEQLHEVIEKLQSELSLmgptvHEMSDLPPGSLHTELSCLQAEGMGGqaLHNELQAAQAAKGAFGQLLAD 1490
Cdd:COG1196 470 EEAALLEAALAELLEELAEAAARLLLL-----LEAEADYEGFLEGVKAALLLAGLRG--LAGAVAVLIGVEAAYEAALEA 542
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958758587 1491 HGHSQALEALQERLQDAEAAAARHLTELEHCVALRQAEVEAMASRIQEFEATLKAKEAIIVQRDLEIDAVNKWKV 1565
Cdd:COG1196 543 ALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYV 617
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1059-1701 |
1.45e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 1.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1059 KQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESE 1138
Cdd:TIGR02168 288 KELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1139 QQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAGTPVSAGREDAALQKEVESLTRDQWESRKQSEK 1218
Cdd:TIGR02168 368 EELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEE 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1219 DRATLLSQMRVLESELEDQLVQHRgcaQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEF--QQEIKWLEGQ 1296
Cdd:TIGR02168 448 ELEELQEELERLEEALEELREELE---EAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLknQSGLSGILGV 524
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1297 LRQATRPRP----------PGPRDSQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETN---- 1362
Cdd:TIGR02168 525 LSELISVDEgyeaaieaalGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFlgva 604
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1363 ------------------------ENIQRQMAQLQEELEKQRRSTEELEVVN-----------------SRNSEIEELKA 1401
Cdd:TIGR02168 605 kdlvkfdpklrkalsyllggvlvvDDLDNALELAKKLRPGYRIVTLDGDLVRpggvitggsaktnssilERRREIEELEE 684
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1402 IIEHLQENQEQLQKA---KAEEIEQLHEVIEKLQSELSLMGPTVHEMSDLPPGSLHTELSCL----QAEGMGGQALHNEL 1474
Cdd:TIGR02168 685 KIEELEEKIAELEKAlaeLRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEeriaQLSKELTELEAEIE 764
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1475 QAAQAAKGAFGQLLADHGHSQALEALQERLQDAEAAAARHLTELEHCVALRQAEVEAMASRIQEFEATLKAKEAIIVQRD 1554
Cdd:TIGR02168 765 ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLE 844
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1555 LEIDAVNK--WKVSHSVELEALLLALAHFQHAVEQQTSATPDEPPK-----LQQLLVQCARLSHQLHVLYRRFLRCQVEL 1627
Cdd:TIGR02168 845 EQIEELSEdiESLAAEIEELEELIEELESELEALLNERASLEEALAllrseLEELSEELRELESKRSELRRELEELREKL 924
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958758587 1628 GQHQPRVasvgcadppAEAQGKRDGELEQdgvssglALAPHSLVAQAKEEQPEDCHLGNTSLRAQLRQLEEKLD 1701
Cdd:TIGR02168 925 AQLELRL---------EGLEVRIDNLQER-------LSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2084-2597 |
1.55e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.72 E-value: 1.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2084 YNSLVKKLEKVIQEQGDLQKVREHAclpdrSSLLAEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQV 2163
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEEL-----EAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2164 ELLAY---KVEQEKCIANDLQKTLSKEQEAASDVRKRLMVEQGAVQDLKSELHACKQENTNLLESLDKVQQEVLRLRYGH 2240
Cdd:COG1196 309 ERRREleeRLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2241 VTwSYSGTSSASAGRAVLDGKENELKVVLEELECERGKGQVLQAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNNQ 2320
Cdd:COG1196 389 LE-ALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2321 LCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELRKSLEAERSR---------SLELSEALQHERLLTEQLSRN 2391
Cdd:COG1196 468 LLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAglrglagavAVLIGVEAAYEAALEAALAAA 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2392 AQEACARQDTQAQHA--LLRKLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKE-------------- 2455
Cdd:COG1196 548 LQNIVVEDDEVAAAAieYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADAryyvlgdtllgrtl 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2456 VSGNLRSAVDALQTHKQELGCCL-------EREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRV 2528
Cdd:COG1196 628 VAARLEAALRRAVTLAGRLREVTlegeggsAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEER 707
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958758587 2529 KEKLRELELQRQRDEHKIEQLQRLVRELRWKEEAPGGNGPCRGSPCLGSLERDQFQEQQQELEKIRQQL 2597
Cdd:COG1196 708 ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
870-1431 |
4.20e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.18 E-value: 4.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 870 QELQASQDQGAQVRDQVFLLSRELEECRGELEQLQQRRERENQEGATLicmlRADVDLAQSEGKALRDALRRLLDLFGET 949
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEEL----EEELAELEEELEELEEELEELEEELEEA 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 950 LKAAVTLKSRISERAGLLLDHEDAVDTSGAQLAAAALGEMWPDEGLLDIDRTLPEGAETSSvceisshvcesffmspENT 1029
Cdd:COG1196 350 EEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEE----------------ALL 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1030 QECEQpIRKVYQSLSTAVEGLLDMALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALE 1109
Cdd:COG1196 414 ERLER-LEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1110 LHTAEGLLEGFKVEKADLQEALGKKEESE-QQLIVELEDLRKQLQQASRELLTLKEENSVLWN------QKETFTNEAKE 1182
Cdd:COG1196 493 LLLLLEAEADYEGFLEGVKAALLLAGLRGlAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDdevaaaAIEYLKAAKAG 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1183 REAGTPVSAGREDAALQKEVESLTRDQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLATLD 1262
Cdd:COG1196 573 RATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLE 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1263 KHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRPRPPGPRDSQCAKLDEEVELLQEKLREKLDGFNELVIKKD 1342
Cdd:COG1196 653 GEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEA 732
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1343 LADQQLLIQEEEIKHLEETNENIQRQM---AQLQEELEKQRRSTEELEVVNSRnsEIEELKAIIEHLQENQEQLQKAKaE 1419
Cdd:COG1196 733 EREELLEELLEEEELLEEEALEELPEPpdlEELERELERLEREIEALGPVNLL--AIEEYEELEERYDFLSEQREDLE-E 809
|
570
....*....|..
gi 1958758587 1420 EIEQLHEVIEKL 1431
Cdd:COG1196 810 ARETLEEAIEEI 821
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
147-781 |
9.86e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.23 E-value: 9.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 147 EKETALTELREMLNGRRAQELALLQSRQQCELELMREQHAREKEEMALRNEQETAELKEKFRSEMEKTVQMMETLKQDWE 226
Cdd:PTZ00121 1209 EEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEE 1288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 227 SERELCL---ETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEkifQAKHEAEVSLKNLEAQHQAAIRKLQEDLRSEhc 303
Cdd:PTZ00121 1289 KKKADEAkkaEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKAD---AAKKKAEEAKKAAEAAKAEAEAAADEAEAAE-- 1363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 304 qylqdlelrfrEKEKAKELELETLQASYEDLKAQSQEEirhlwSQLESMKTNREEQNGSWEPLLAQASHLEELQHLRSDF 383
Cdd:PTZ00121 1364 -----------EKAEAAEKKKEEAKKKADAAKKKAEEK-----KKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKA 1427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 384 AQQQQQERAQHESELehlrvyfEKKLNDAEKTYQEdltvfQQRLQEAREESLESAEISsscmfpEETSGRERKEPPDPLD 463
Cdd:PTZ00121 1428 EEKKKADEAKKKAEE-------AKKADEAKKKAEE-----AKKAEEAKKKAEEAKKAD------EAKKKAEEAKKADEAK 1489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 464 LQLEQPKAQGSLIEDYQEKLSNAEE--KIELMKQEFQKKEAEWELSREDLKRDAEEKLASmflELREKAESEKLSIINRF 541
Cdd:PTZ00121 1490 KKAEEAKKKADEAKKAAEAKKKADEakKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD---ELKKAEELKKAEEKKKA 1566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 542 E--LRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDEVllcsqcgkepSVAQDEK-SAILLREKEDCALQLL 618
Cdd:PTZ00121 1567 EeaKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA----------KKAEEAKiKAEELKKAEEEKKKVE 1636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 619 TAQNRFLEERKEIMEKFAKEQDAFLLDTQEKHSHELQLLQQGHQQQLLALRMELETKHHSELTEQLASLESKQQALLETH 698
Cdd:PTZ00121 1637 QLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK 1716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 699 VAKmQVKHDAEISALEKRHLSNLDElESCYVADIQTIRDEHKKALELLRAELEEQLQKKDSCHREILTQELEKLKLKHAE 778
Cdd:PTZ00121 1717 KAE-ELKKAEEENKIKAEEAKKEAE-EDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRM 1794
|
...
gi 1958758587 779 ELQ 781
Cdd:PTZ00121 1795 EVD 1797
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2160-2514 |
1.66e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 1.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2160 RRQVELLAYKVEQEKCIANDLQKTLSKEQEAASDVRKRLMVEQGAVQDLKSELHACKQENTNLLESLDKVQQEVLRLRyg 2239
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLE-- 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2240 hvtwsysgtssasAGRAVLDGKENELKVVLEELECERgkgqVLQAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNN 2319
Cdd:COG1196 302 -------------QDIARLEERRRELEERLEELEEEL----AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2320 QLCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELRKSLEAERSRSLELSEALQhERLLTEQLSRNAQEACARQ 2399
Cdd:COG1196 365 EALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE-ELEEALAELEEEEEEEEEA 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2400 DTQAQHALLRKLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRR---EKEVSGNLRSAVDALQTHKQELGC 2476
Cdd:COG1196 444 LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLleaEADYEGFLEGVKAALLLAGLRGLA 523
|
330 340 350
....*....|....*....|....*....|....*....
gi 1958758587 2477 -CLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRR 2514
Cdd:COG1196 524 gAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAA 562
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2310-2562 |
1.75e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 1.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2310 SLEKQLAQNNQLCVALKHERaakdnlqKELQIEASRCEALLAQEKGQLSELRKSLEAERSRSLELSEAL----QHERLLT 2385
Cdd:TIGR02168 236 ELREELEELQEELKEAEEEL-------EELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEIsrleQQKQILR 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2386 EQLSRNAQEACARQDTQAQhaLLRKLKAEKARALELEAMLEKVQKQAAHTQQqleaqaqerclELRREKEVSGNLRSAVD 2465
Cdd:TIGR02168 309 ERLANLERQLEELEAQLEE--LESKLDELAEELAELEEKLEELKEELESLEA-----------ELEELEAELEELESRLE 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2466 ALQTHKQELGCCLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRVKEKL----RELELQRQR 2541
Cdd:TIGR02168 376 ELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELeeleEELEELQEE 455
|
250 260
....*....|....*....|.
gi 1958758587 2542 DEHKIEQLQRLVRELRWKEEA 2562
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQA 476
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
136-543 |
1.83e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 1.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 136 QLELTQANLQKeKETALTELREMLNGRRAQELALLQSRqqcelELMREQHAREKEEMALRNEQETAELkEKFRSEMEKTV 215
Cdd:TIGR02168 180 KLERTRENLDR-LEDILNELERQLKSLERQAEKAERYK-----ELKAELRELELALLVLRLEELREEL-EELQEELKEAE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 216 QMMETLkQDWESERELCLETLRKElsakhQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAIRKLQ 295
Cdd:TIGR02168 253 EELEEL-TAELQELEEKLEELRLE-----VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 296 EDLRSEHCQylqdlelrfREKEKAKELELETLQASYEDLKAQSQEEIRhlwsQLESMKTNREEQNgswepllaqashlEE 375
Cdd:TIGR02168 327 ELESKLDEL---------AEELAELEEKLEELKEELESLEAELEELEA----ELEELESRLEELE-------------EQ 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 376 LQHLRSDFAqQQQQERAQHESELEHLrvyfEKKLNDAEKTYQEdltvfQQRLQEAREESLESAEIssscmfpeetsgrer 455
Cdd:TIGR02168 381 LETLRSKVA-QLELQIASLNNEIERL----EARLERLEDRRER-----LQQEIEELLKKLEEAEL--------------- 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 456 keppDPLDLQLEQPKAQgslIEDYQEKLSNAEEKIELMKQEFQKKEAEWELSREDLKRDAEEK--LASMFLELREKAESE 533
Cdd:TIGR02168 436 ----KELQAELEELEEE---LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLdsLERLQENLEGFSEGV 508
|
410
....*....|
gi 1958758587 534 KLSIINRFEL 543
Cdd:TIGR02168 509 KALLKNQSGL 518
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1120-1436 |
2.29e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.00 E-value: 2.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1120 FKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTlKEENSVLWNQKETFtnEAKEReAGTPVSAGREDAALQ 1199
Cdd:TIGR02169 168 FDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREK-AERYQALLKEKREY--EGYEL-LKEKEALERQKEAIE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1200 KEVESLTRDQWESRKQSEKDRATLLSQMRVLEsELEDQLVQHRGCAQLA--EEVTTLKQQLATLDKHLR---SQRQFMDE 1274
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISELEKRLEEIEQLLE-ELNKKIKDLGEEEQLRvkEKIGELEAEIASLERSIAekeRELEDAEE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1275 QAAEREHEREEFQQEIKWLEGQLRQATRPRppgprdsqcAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEE 1354
Cdd:TIGR02169 323 RLAKLEAEIDKLLAEIEELEREIEEERKRR---------DKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1355 IKHLEETNENIQRQMAQLQEELEKQRRSTEEL------------EVVNSRNSEIEELKAIIEHLQENQEQLQKAKaEEIE 1422
Cdd:TIGR02169 394 LEKLKREINELKRELDRLQEELQRLSEELADLnaaiagieakinELEEEKEDKALEIKKQEWKLEQLAADLSKYE-QELY 472
|
330
....*....|....
gi 1958758587 1423 QLHEVIEKLQSELS 1436
Cdd:TIGR02169 473 DLKEEYDRVEKELS 486
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1040-1338 |
3.36e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 3.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1040 YQSLSTAVEGL-LDMALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRlalELHTAEGLLE 1118
Cdd:TIGR02168 215 YKELKAELRELeLALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEE---EIEELQKELY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1119 GFKVEKADLQEALGKKEESEQQLI-------VELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAGTPVSA 1191
Cdd:TIGR02168 292 ALANEISRLEQQKQILRERLANLErqleeleAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1192 GREDaALQKEVESLTRDQWESRKQSEKDRATLlsqmRVLESELEdQLVQHRgcAQLAEEVTTLKQQLATLDKH-LRSQRQ 1270
Cdd:TIGR02168 372 SRLE-ELEEQLETLRSKVAQLELQIASLNNEI----ERLEARLE-RLEDRR--ERLQQEIEELLKKLEEAELKeLQAELE 443
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958758587 1271 FMDEQAAEREHEREEFQQEIKWLEGQLRQATRPRPpgPRDSQCAKLDEEVELLqEKLREKLDGFNELV 1338
Cdd:TIGR02168 444 ELEEELEELQEELERLEEALEELREELEEAEQALD--AAERELAQLQARLDSL-ERLQENLEGFSEGV 508
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
138-471 |
5.75e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.92 E-value: 5.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 138 ELTQANLQKEKEtaltELREMLNGRRAQELALLQSRQQCELELMREQHAREKEE--MALRNEQETAELKEKFRSEMEKTV 215
Cdd:PTZ00121 1526 EAKKAEEAKKAD----EAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDknMALRKAEEAKKAEEARIEEVMKLY 1601
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 216 QMMETLKQDW---ESERELCLETLRKELSAKHQSEmeglqnQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAIR 292
Cdd:PTZ00121 1602 EEEKKMKAEEakkAEEAKIKAEELKKAEEEKKKVE------QLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK 1675
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 293 KLQEDLRSEHCQYLQDLELRFREKEKAKELELETLQASyEDLKAQS---QEEIRHLwsQLESMKTNREEQNGSWEPLLAQ 369
Cdd:PTZ00121 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAE-EKKKAEElkkAEEENKI--KAEEAKKEAEEDKKKAEEAKKD 1752
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 370 ASHLEELQHLRSDFAQQQQQERAQHESEL-EHLRVYFEKKLNDAEKTYQEDLTVFQQRLQEAREESLESAEissscmfPE 448
Cdd:PTZ00121 1753 EEEKKKIAHLKKEEEKKAEEIRKEKEAVIeEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVIND-------SK 1825
|
330 340
....*....|....*....|...
gi 1958758587 449 ETSGRERKEPPDPLDLQLEQPKA 471
Cdd:PTZ00121 1826 EMEDSAIKEVADSKNMQLEEADA 1848
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
158-495 |
7.10e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 7.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 158 MLNGRRAQELALLQSRQQcelELmrEQHAREKEEMALRNEQETAELKEKfRSEMEKTVQMMETLKQDWES-ERELCLETL 236
Cdd:TIGR02168 660 VITGGSAKTNSSILERRR---EI--EELEEKIEELEEKIAELEKALAEL-RKELEELEEELEQLRKELEElSRQISALRK 733
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 237 RKELSAKHQSEMEGLQNQFQKELSEQKAE-------LEKIFQAKHEAEVSLKNLEA---QHQAAIRKLQEDLRSEHCQY- 305
Cdd:TIGR02168 734 DLARLEAEVEQLEERIAQLSKELTELEAEieeleerLEEAEEELAEAEAEIEELEAqieQLKEELKALREALDELRAELt 813
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 306 -LQDLELRFREKEKAKELELETLQASYEDLKAQS---QEEIRHLWSQLESMKTNREEQNGSWEPLLAQASHLEELQHLRS 381
Cdd:TIGR02168 814 lLNEEAANLRERLESLERRIAATERRLEDLEEQIeelSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLR 893
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 382 DFAQQQQQERAQHESELEHLRVYFEkKLNDAEKTYQEDLTVFQQRLQEAREESLESAEISsscmfPEETSGRERKEPPDP 461
Cdd:TIGR02168 894 SELEELSEELRELESKRSELRRELE-ELREKLAQLELRLEGLEVRIDNLQERLSEEYSLT-----LEEAEALENKIEDDE 967
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1958758587 462 LDLQLEQPKAQGSL----------IEDYQEKlsnAEEKIELMKQ 495
Cdd:TIGR02168 968 EEARRRLKRLENKIkelgpvnlaaIEEYEEL---KERYDFLTAQ 1008
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1059-1439 |
7.18e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.77 E-value: 7.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1059 KQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLAL--ELHTAEGLLEGFKVEKADLQEalgkKEE 1136
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLyqELEALEAELAELPERLEELEE----RLE 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1137 SEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAGTPVSAGREDAALQKEVESLTR--DQWESRK 1214
Cdd:COG4717 157 ELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEelEQLENEL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1215 QSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLATL----DKHLRSQRQFMDEQAAEREHEREEFQQEI 1290
Cdd:COG4717 237 EAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLgllaLLFLLLAREKASLGKEAEELQALPALEEL 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1291 KWLEGQLRQATRPRPPGPRDSQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQ--RQ 1368
Cdd:COG4717 317 EEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEqaEE 396
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958758587 1369 MAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQLQkAKAEEIEQLHEVIEKLQSELSLMG 1439
Cdd:COG4717 397 YQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELE-ELEEELEELREELAELEAELEQLE 466
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
119-579 |
9.92e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 54.84 E-value: 9.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 119 SLELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQeLALLQSRQQCELELMREQHAREKEEMALRNEQ 198
Cdd:pfam12128 252 TLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQ-WKEKRDELNGELSAADAAVAKDRSELEALEDQ 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 199 ETAELKEkfrsEMEKTVQMMETLKQdWESERELcLETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEV 278
Cdd:pfam12128 331 HGAFLDA----DIETAAADQEQLPS-WQSELEN-LEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIRE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 279 SLKNLEAQHQAAIRKLQEDLRSEHCQYLQDL-ELRFREKEKAKELELETLQASY-EDLK---AQSQEEIRHLWSQLESMK 353
Cdd:pfam12128 405 ARDRQLAVAEDDLQALESELREQLEAGKLEFnEEEYRLKSRLGELKLRLNQATAtPELLlqlENFDERIERAREEQEAAN 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 354 TNREeqngSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHESELEHLrvyfekkLNDAEKTYQEDLTVFQQRLQEAREE 433
Cdd:pfam12128 485 AEVE----RLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQ-------LFPQAGTLLHFLRKEAPDWEQSIGK 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 434 SLESAEISSSCMFPEETSGR--------------ERKEPPDPLDL--QLEQPKAQ-GSLIEDYQEKLSNAEEKIELMKQE 496
Cdd:pfam12128 554 VISPELLHRTDLDPEVWDGSvggelnlygvkldlKRIDVPEWAASeeELRERLDKaEEALQSAREKQAAAEEQLVQANGE 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 497 FQKKEAEWELSREDLKrDAEEKLASMFLELREKAESEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQL 576
Cdd:pfam12128 634 LEKASREETFARTALK-NARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREA 712
|
...
gi 1958758587 577 EQE 579
Cdd:pfam12128 713 RTE 715
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
257-639 |
1.14e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.68 E-value: 1.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 257 KELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAIRKLQE------DLRSEhcqyLQDLELRFREKEKAKEL--ELETLQ 328
Cdd:PRK03918 172 KEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEisselpELREE----LEKLEKEVKELEELKEEieELEKEL 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 329 ASYEDLKAQSQEEIRHLWSQLESMKTNREEqngswepLLAQASHLEELQhlrsdfaqqqqqERAQHESELEHLRVYFEKK 408
Cdd:PRK03918 248 ESLEGSKRKLEEKIRELEERIEELKKEIEE-------LEEKVKELKELK------------EKAEEYIKLSEFYEEYLDE 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 409 LNDAEKT---YQEDLTVFQQRLQEAREESLESAEISSscmfpEETSGRERKEPPDPLDLQLEQPKAQGSLIEDYQEKLSN 485
Cdd:PRK03918 309 LREIEKRlsrLEEEINGIEERIKELEEKEERLEELKK-----KLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTG 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 486 AE-EKIELMKQEFQKKEAEWElsredlkrDAEEKLASMFLELREKAESEKLSIIN-----------RFELRESSMRHLQD 553
Cdd:PRK03918 384 LTpEKLEKELEELEKAKEEIE--------EEISKITARIGELKKEIKELKKAIEElkkakgkcpvcGRELTEEHRKELLE 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 554 QQAAQISDLERSLREQQGHLRQLEQELTRDEVLLcsqcGKEPSVAQDEKSAILLREKED----CALQLLTAQNRFLEERK 629
Cdd:PRK03918 456 EYTAELKRIEKELKEIEEKERKLRKELRELEKVL----KKESELIKLKELAEQLKELEEklkkYNLEELEKKAEEYEKLK 531
|
410
....*....|
gi 1958758587 630 EIMEKFAKEQ 639
Cdd:PRK03918 532 EKLIKLKGEI 541
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
273-1165 |
1.41e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 1.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 273 KHEAEvslKNLEAQHQAAIRklQEDLRSEHCQYLQDLElrfREKEKAKEleletlqasYEDLKaqsqEEIRHLwsQLESM 352
Cdd:TIGR02168 174 RKETE---RKLERTRENLDR--LEDILNELERQLKSLE---RQAEKAER---------YKELK----AELREL--ELALL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 353 KTNREEQNGSWEPLLAQashLEELQHLRSDFAQQQQQERAQHEsELEHLRVYFEKKLNDAEKTYQE------DLTVFQQR 426
Cdd:TIGR02168 231 VLRLEELREELEELQEE---LKEAEEELEELTAELQELEEKLE-ELRLEVSELEEEIEELQKELYAlaneisRLEQQKQI 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 427 LQEAREESLESAEissscmfpeetsgrerkeppdPLDLQLEQPKAQgslIEDYQEKLSNAEEKIELMKQEFQKKEAEWEl 506
Cdd:TIGR02168 307 LRERLANLERQLE---------------------ELEAQLEELESK---LDELAEELAELEEKLEELKEELESLEAELE- 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 507 SREDLKRDAEEKLAsmflELREKAESEKLsiiNRFELRESsmrhlQDQQAAQISDLERSLREQQGHLRQLEQELtrdevl 586
Cdd:TIGR02168 362 ELEAELEELESRLE----ELEEQLETLRS---KVAQLELQ-----IASLNNEIERLEARLERLEDRRERLQQEI------ 423
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 587 lcSQCGKEPSVAQDEKSAILLREKEDCALQLLTAQNRFLEERKEIMEKFAKEQDAFLLDTQEKHSHELQLLQQGHQQQll 666
Cdd:TIGR02168 424 --EELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE-- 499
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 667 alrmeletkHHSELTEQLASLESKQQALLETH-VAKMQVKHDAEIS-----ALEKRHLSNLDELESCYVADIQTIRdEHK 740
Cdd:TIGR02168 500 ---------NLEGFSEGVKALLKNQSGLSGILgVLSELISVDEGYEaaieaALGGRLQAVVVENLNAAKKAIAFLK-QNE 569
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 741 KALELLRAELEEQLQKKDSCHREILTQELEKLKLkhAEELQSVRNSLRVKMSAqhTESGKGPAADLQGAHQQKAPAMALH 820
Cdd:TIGR02168 570 LGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGV--AKDLVKFDPKLRKALSY--LLGGVLVVDDLDNALELAKKLRPGY 645
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 821 N----EGHQLEEDGDAALGGADTEDLQHHAEPREREGPHTVEMQTSQTELAKpQELQASQDQGAQVRDQVFLLSRELEEC 896
Cdd:TIGR02168 646 RivtlDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELE-KALAELRKELEELEEELEQLRKELEEL 724
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 897 RGELEQLQQRRERENQEGATLicmlRADVDLAQSEGKALRDALRRLLDLFGETLKAAVTLKSRISERAGLLLDHEDAVDT 976
Cdd:TIGR02168 725 SRQISALRKDLARLEAEVEQL----EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 977 SGAQLAAAALgemwpdegllDIDRTLPEGAETSSVCEISSHVCESFFMSPENTQECEQPIRKVYQSLSTAVEGLLDMALD 1056
Cdd:TIGR02168 801 LREALDELRA----------ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEE 870
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1057 SSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEE 1136
Cdd:TIGR02168 871 LESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950
|
890 900 910
....*....|....*....|....*....|
gi 1958758587 1137 SEQQLIVELEDLR-KQLQQASRELLTLKEE 1165
Cdd:TIGR02168 951 LTLEEAEALENKIeDDEEEARRRLKRLENK 980
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
123-790 |
1.50e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 54.21 E-value: 1.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 123 EALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQE----LALLQSRQQCELELMREQHAREKEEMALR--- 195
Cdd:pfam02463 181 ETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEyllyLDYLKLNEERIDLLQELLRDEQEEIESSKqei 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 196 -NEQETAELKEKFRSEMEKTVQMMETLKQDWESERELCLETLRKELSAKH--QSEMEGLQNQFQKELSEQKAELEKIFQA 272
Cdd:pfam02463 261 eKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVddEEKLKESEKEKKKAEKELKKEKEEIEEL 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 273 KHEAEVSLKNLEA-----QHQAAIRKLQEDLRSEHCQYLQDLELRFREKEKAKELELEtlqasYEDLKAQSQEEIRHLWS 347
Cdd:pfam02463 341 EKELKELEIKREAeeeeeEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELE-----LKSEEEKEAQLLLELAR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 348 QLESMKTNREEQngswepllaQASHLEELQHLRsDFAQQQQQERAQHESELEHLRVYFEKKLNDAEKTYQEDLTVFQQRL 427
Cdd:pfam02463 416 QLEDLLKEEKKE---------ELEILEEEEESI-ELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQ 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 428 QEAREESLESAEISSSCMFPEETSGRERKEPPDPLDLQLEQPKAQGSLIEDYQEKLSNAEEKIELMKQEFQKKEAEWELS 507
Cdd:pfam02463 486 LELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQK 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 508 REDLKRDAEEKLASMFLELREKAESEKLSIINRFELRessMRHLQDQQAAQISDLERSLR-EQQGHLRQLEQELTRDEVL 586
Cdd:pfam02463 566 LVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPI---LNLAQLDKATLEADEDDKRAkVVEGILKDTELTKLKESAK 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 587 LCSQCGKEPSVAQDEKSAILLREKEDCALQLLTAQNRFLEERKEIMEKFAKEQDAflldtQEKHSHELQLLQQGHQQQLL 666
Cdd:pfam02463 643 AKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRR-----QLEIKKKEQREKEELKKLKL 717
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 667 ALRMELETKHHSELTEQLASLESKQQALLETHVAKMQVKHDAEISALEKRHLSNLDELESCYVADIQTIRDEHKKALELL 746
Cdd:pfam02463 718 EAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLK 797
|
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 1958758587 747 RAELEEQLQKKDSCHREILTQELEKLKLKHAEELQSVRNSLRVK 790
Cdd:pfam02463 798 AQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALE 841
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2311-2561 |
2.16e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 2.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2311 LEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELRKSLEAERSR-----------SLELSEALQ 2379
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEveqleeriaqlSKELTELEA 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2380 HERLLTEQLSRNAQEACARQDTQAQhaLLRKLKAEKARALELEAMLEKVQKQAAHTQQqleaqaqerclELRREKEVSGN 2459
Cdd:TIGR02168 762 EIEELEERLEEAEEELAEAEAEIEE--LEAQIEQLKEELKALREALDELRAELTLLNE-----------EAANLRERLES 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2460 LRSAVDALQTHKQELGCCLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRVK--EKLRELEL 2537
Cdd:TIGR02168 829 LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEElsEELRELES 908
|
250 260
....*....|....*....|....
gi 1958758587 2538 QRQRDEHKIEQLQRLVRELRWKEE 2561
Cdd:TIGR02168 909 KRSELRRELEELREKLAQLELRLE 932
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
542-1159 |
3.36e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.02 E-value: 3.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 542 ELRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDEVLLcsqcgkepsvAQDEKSAILLREK-EDCALQLLTA 620
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAEL----------AELEAELEELRLElEELELELEEA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 621 QNRFLEERKEIMEkfakeqdaflLDTQEKHSHELQLLQQGHQQQLLALRMELEtKHHSELTEQLASLESKQQALLETHVA 700
Cdd:COG1196 287 QAEEYELLAELAR----------LEQDIARLEERRRELEERLEELEEELAELE-EELEELEEELEELEEELEEAEEELEE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 701 KMQVKHDAE--ISALEKRHLSNLDELESCYVADIQTIRDEHKKALELLRAELEEQLQKKDschREILTQELEKLKLKHAE 778
Cdd:COG1196 356 AEAELAEAEeaLLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER---LERLEEELEELEEALAE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 779 ELQSVRNSLRVKMSAQHTEsgkgpAADLQGAHQQKAPAMALHNEGHQLEEDGDAALGGADTEDLQHHAEPREREGPHtvE 858
Cdd:COG1196 433 LEEEEEEEEEALEEAAEEE-----AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE--G 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 859 MQTSQTELAKPQELQASQDQGAQVRDQVFLLSRELEECRGELEQLQQRRERENQEGAtlicmlrADVDLAQSEGKALRDA 938
Cdd:COG1196 506 FLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAA-------IEYLKAAKAGRATFLP 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 939 LRRLLDLFGETLKAAVTLKSRISERAGLLLDHEDAVDTSGAQLAAAALGEMWPDEGLLDIDRTLPEGAETSSvceisshv 1018
Cdd:COG1196 579 LDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVT-------- 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1019 cesffmspentqeceQPIRKVYQSLSTAVEGLLDMALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLRE 1098
Cdd:COG1196 651 ---------------LEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEE 715
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958758587 1099 ESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASREL 1159
Cdd:COG1196 716 RLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1059-1435 |
3.90e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.76 E-value: 3.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1059 KQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLA-----LELHTAEGLLEGFKVEKADLQEALGK 1133
Cdd:PRK03918 391 KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPvcgreLTEEHRKELLEEYTAELKRIEKELKE 470
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1134 KEESEQQLIVELEDLRKQLQQASR--ELLTLKEENSVLWNQKETFTNEAKEREAGTPVSAGREDAALQKEVESLTRDqWE 1211
Cdd:PRK03918 471 IEEKERKLRKELRELEKVLKKESEliKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKE-LE 549
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1212 SRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEvttlkqqlaTLDKHLRSQRQFMDE--QAAEREHEREEFQQE 1289
Cdd:PRK03918 550 KLEELKKKLAELEKKLDELEEELAELLKELEELGFESVE---------ELEERLKELEPFYNEylELKDAEKELEREEKE 620
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1290 IKWLEGQLRQATRprppgprdsQCAKLDEEVELLQEKLREKLDGFNE-----LVIKKDLADQQLLIQEEEIKHLEETNEN 1364
Cdd:PRK03918 621 LKKLEEELDKAFE---------ELAETEKRLEELRKELEELEKKYSEeeyeeLREEYLELSRELAGLRAELEELEKRREE 691
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958758587 1365 IQRQMAQLQEELEKQRRSTEELEVVNSRNSEIEELKaiiehlqenqEQLQKAKAEEIEQLHEVIEKLQSEL 1435
Cdd:PRK03918 692 IKKTLEKLKEELEEREKAKKELEKLEKALERVEELR----------EKVKKYKALLKERALSKVGEIASEI 752
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1059-1435 |
4.74e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.37 E-value: 4.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1059 KQLEDARQLHRCVEKEFrhrdEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEEse 1138
Cdd:PRK03918 186 KRTENIEELIKEKEKEL----EEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEE-- 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1139 qqLIVELEDLRKQLQQASRELltlkeensvlwnqketftnEAKEREagtpVSAGREDAALQKEVESLTRDQWESRKQSEK 1218
Cdd:PRK03918 260 --KIRELEERIEELKKEIEEL-------------------EEKVKE----LKELKEKAEEYIKLSEFYEEYLDELREIEK 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1219 DRATLLSQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLATLDKHLRSQrqfmdeqaaerehereefqQEIKWLEGQLR 1298
Cdd:PRK03918 315 RLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELY-------------------EEAKAKKEELE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1299 QATRPRPPGPRDSQCAKLD------EEVELLQEKLREKLDGFNELVIKKDLADQQL------------LIQEEEIKHLEE 1360
Cdd:PRK03918 376 RLKKRLTGLTPEKLEKELEelekakEEIEEEISKITARIGELKKEIKELKKAIEELkkakgkcpvcgrELTEEHRKELLE 455
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958758587 1361 TN----ENIQRQMAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSEL 1435
Cdd:PRK03918 456 EYtaelKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKL 534
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2081-2384 |
5.32e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 5.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2081 LGDYNSLVKKLEKVIQEQGDLQKVREHAclpdrSSLLAEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLR 2160
Cdd:TIGR02168 231 VLRLEELREELEELQEELKEAEEELEEL-----TAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2161 RQVELLAYKVEQEKCIANDLQKTLSKEQEAA---SDVRKRLMVEQGAVQDLKSELHACKQENTNLLESLDKVQQEVLRLR 2237
Cdd:TIGR02168 306 ILRERLANLERQLEELEAQLEELESKLDELAeelAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2238 yghvtwsySGTSSASAGRAVLDGKENELKVVLEELECERGKGQVLQAQQEEQQLRHLQREgqSSRALEELKISLEKQLAQ 2317
Cdd:TIGR02168 386 --------SKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE--LQAELEELEEELEELQEE 455
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958758587 2318 NNQLCVALKHERAAKDNLQKELQIEASRcealLAQEKGQLSELRKSLEAERSRSLELSEALQHERLL 2384
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQALDAAERE----LAQLQARLDSLERLQENLEGFSEGVKALLKNQSGL 518
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
121-361 |
7.15e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 7.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 121 ELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQELallqSRQQCELELMREQHAREKEEMAL---RNE 197
Cdd:TIGR02168 268 KLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANL----ERQLEELEAQLEELESKLDELAEelaELE 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 198 QETAELKEKFRS------EMEKTVQMMETLKQDWESErelcLETLRKELsAKHQSEMEGLQNQFQkELSEQKAELEKifQ 271
Cdd:TIGR02168 344 EKLEELKEELESleaeleELEAELEELESRLEELEEQ----LETLRSKV-AQLELQIASLNNEIE-RLEARLERLED--R 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 272 AKHEAEVSLKNLEAQHQAAIRKLQEDLrSEHCQYLQDLELRFREKEKAKELELETLQASYEDLKaQSQEEIRHLWSQLES 351
Cdd:TIGR02168 416 RERLQQEIEELLKKLEEAELKELQAEL-EELEEELEELQEELERLEEALEELREELEEAEQALD-AAERELAQLQARLDS 493
|
250
....*....|
gi 1958758587 352 MKTNREEQNG 361
Cdd:TIGR02168 494 LERLQENLEG 503
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
178-965 |
1.31e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.27 E-value: 1.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 178 LELMREQHAREKEEMAlRNEQETAELKEKFRSEMEKTVQMMETLKQDWESERELCLETLRKElsakHQSEmEGLQNQFQK 257
Cdd:pfam15921 76 IERVLEEYSHQVKDLQ-RRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRE----SQSQ-EDLRNQLQN 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 258 ELseqkaelekifqakHEAEvslknleaqhqaAIRKLQEDLRSEHCQYLQDLelrfREKEKAKELELETLQASYEDLKAQ 337
Cdd:pfam15921 150 TV--------------HELE------------AAKCLKEDMLEDSNTQIEQL----RKMMLSHEGVLQEIRSILVDFEEA 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 338 SQEEIRhlwsQLESMKTNREEQNGSwepllAQASHLEELqhlrsdfaqqqqqeraqhESELEHL--RVY-FEKKLNDAEK 414
Cdd:pfam15921 200 SGKKIY----EHDSMSTMHFRSLGS-----AISKILREL------------------DTEISYLkgRIFpVEDQLEALKS 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 415 TYQEDLTVFQQRLQEAREESLESAEISSSCMFPEETSGRERKEP-PDPLDLQLEQPKAQGSLiedYQEKLSNAEEKIELM 493
Cdd:pfam15921 253 ESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSiQSQLEIIQEQARNQNSM---YMRQLSDLESTVSQL 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 494 KQEFQKKEAEWELSREDLkrdaEEKLASMFLELRE-KAESEKLSiinrfelRESSmrHLQDQQAAQISDL-----ERSLR 567
Cdd:pfam15921 330 RSELREAKRMYEDKIEEL----EKQLVLANSELTEaRTERDQFS-------QESG--NLDDQLQKLLADLhkrekELSLE 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 568 EQQG---------------HLRQ----LEQELTRDEVLLCSQCGKEPSVAQDEKSAILLREKEDCALQLLTAQnrfLEER 628
Cdd:pfam15921 397 KEQNkrlwdrdtgnsitidHLRRelddRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQ---LEST 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 629 KEIMEKFAKEQDAflldtqekhshelqllqqghqqqllaLRMELETKHHSeLTEQLASLESKQQALLETHVAKMQVKHDA 708
Cdd:pfam15921 474 KEMLRKVVEELTA--------------------------KKMTLESSERT-VSDLTASLQEKERAIEATNAEITKLRSRV 526
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 709 EISALEKRHLSNldelescyvadiqtiRDEHKKALELLRAELEEQLQKKDSChREILTQELEKLklkhaeelqsvrnslr 788
Cdd:pfam15921 527 DLKLQELQHLKN---------------EGDHLRNVQTECEALKLQMAEKDKV-IEILRQQIENM---------------- 574
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 789 vkmsaqhtesgkgpaADLQGAHQQKAPAMALhnEGHQLEED-GDAALGGADTEDLQHHAEPREREgphtVEMQTSQTELA 867
Cdd:pfam15921 575 ---------------TQLVGQHGRTAGAMQV--EKAQLEKEiNDRRLELQEFKILKDKKDAKIRE----LEARVSDLELE 633
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 868 KPQELQASQDQGAQVRD---QVFLLSRELEECRGELEQLQQRRE-------RENQEGATLICMLRADVDLAQSEGKALRD 937
Cdd:pfam15921 634 KVKLVNAGSERLRAVKDikqERDQLLNEVKTSRNELNSLSEDYEvlkrnfrNKSEEMETTTNKLKMQLKSAQSELEQTRN 713
|
810 820
....*....|....*....|....*...
gi 1958758587 938 ALRRLLDLFGETLKAAVTLKSRISERAG 965
Cdd:pfam15921 714 TLKSMEGSDGHAMKVAMGMQKQITAKRG 741
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
120-829 |
1.48e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 50.74 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 120 LELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLngrraQELALLQSRQQCELELMREQHAREKEEMALRNEQE 199
Cdd:TIGR00618 196 AELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREAL-----QQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 200 TAELKEKFRSEMEKtvqmmetlkqdwesERELCLETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVS 279
Cdd:TIGR00618 271 ELRAQEAVLEETQE--------------RINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQ 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 280 LKNLEAQHQAAIRKLQEDLRSEHCQYLQDLELRFREKEKAKELELETLQASYEDLKAQSQeEIRHLWSQLESMKTNREEQ 359
Cdd:TIGR00618 337 QSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQ-SLCKELDILQREQATIDTR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 360 NGSWEPL---LAQASHLEELQHLRSDFAQQQQQERAQHESELEHLRVYFEKKLNdaEKTYQEDlTVFQQRLQEAREESLE 436
Cdd:TIGR00618 416 TSAFRDLqgqLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLK--EREQQLQ-TKEQIHLQETRKKAVV 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 437 SAEISSSCMFPEETSGRERKEPPDPLDLQLEQPKAQGSL-IEDYQEKLSNAEEKIELMKQEFQKKEAEWElSREDLKRDA 515
Cdd:TIGR00618 493 LARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQrGEQTYAQLETSEEDVYHQLTSERKQRASLK-EQMQEIQQS 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 516 EEKLASMFLELREkaeseklsIINRFELRESSMRHLQDQQaaqiSDLERSLR-EQQGHLRQLEQELTRDEVLLC-SQCGK 593
Cdd:TIGR00618 572 FSILTQCDNRSKE--------DIPNLQNITVRLQDLTEKL----SEAEDMLAcEQHALLRKLQPEQDLQDVRLHlQQCSQ 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 594 EPSVAQDEKSAI---LLREKEDCALQLLTAQNRFLEERKEIMEKFAKEQDAFLLDTQE--KHSHELQLLQQGHQQQLLAL 668
Cdd:TIGR00618 640 ELALKLTALHALqltLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEmlAQCQTLLRELETHIEEYDRE 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 669 RMELETKHHSELTEQLASLESKQQALLE-THVAKMQVKHDAEISALEKRHLSNLDELESCYVADIQTIrdEHKKALELLR 747
Cdd:TIGR00618 720 FNEIENASSSLGSDLAAREDALNQSLKElMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEI--QFFNRLREED 797
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 748 AELEEQLQKKDSCHREILTQELEKLKLKHAEELQSVRNSLRVKMSAQHTEsgKGPAADLQGAHQQKAPAMALHNEGHQLE 827
Cdd:TIGR00618 798 THLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEI--THQLLKYEECSKQLAQLTQEQAKIIQLS 875
|
..
gi 1958758587 828 ED 829
Cdd:TIGR00618 876 DK 877
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1088-1434 |
1.94e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.42 E-value: 1.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1088 KQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQLIV---ELEDLRKQLQQASRELLTLKE 1164
Cdd:PRK02224 200 EEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETleaEIEDLRETIAETEREREELAE 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1165 ENSVLWNQKETFTNEAKEREAGTPVSAGREDAALQKevesltRDQWESRKQSEKDRatlLSQMRVLESELEDQLVQHRGC 1244
Cdd:PRK02224 280 EVRDLRERLEELEEERDDLLAEAGLDDADAEAVEAR------REELEDRDEELRDR---LEECRVAAQAHNEEAESLRED 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1245 A-QLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHereeFQQEIKWLEGQLRQATRPRppgprdsqcakldEEVELL 1323
Cdd:PRK02224 351 AdDLEERAEELREEAAELESELEEAREAVEDRREEIEE----LEEEIEELRERFGDAPVDL-------------GNAEDF 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1324 QEKLREKLDGFNELV---------IKKDLADQQLLIQE----------EEIKHLEETNENIQRqMAQLQEELEKQRRSTE 1384
Cdd:PRK02224 414 LEELREERDELREREaeleatlrtARERVEEAEALLEAgkcpecgqpvEGSPHVETIEEDRER-VEELEAELEDLEEEVE 492
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1385 ELEVVNSRNSEIEELKAIIEHLQENQEQLQK----------AKAEEIEQLHEVIEKLQSE 1434
Cdd:PRK02224 493 EVEERLERAEDLVEAEDRIERLEERREDLEEliaerretieEKRERAEELRERAAELEAE 552
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
201-972 |
2.38e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 50.36 E-value: 2.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 201 AELKEKFRSEMEKTVQMMETLKQDWESERELCLETLRKELSAKhqSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVSL 280
Cdd:pfam02463 165 SRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAK--KALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 281 KNLEAQHQAAIRKLQEDLRSEhcQYLQDLELRFREKEKAKELELETLQASYEDLKAQSQEEIRHLWSQLESmktNREEQN 360
Cdd:pfam02463 243 QELLRDEQEEIESSKQEIEKE--EEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVD---DEEKLK 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 361 GSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHESELEhlRVYFEKKLNDAEKTYQEDLTVFQQRLQEAREESLESAEI 440
Cdd:pfam02463 318 ESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEE--EEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 441 SSSCMFPEETSGRERKEPPDPLDLQLEQPKAQGSLIEDYQEKLSNAEEKIELMKQEFQKKEA--EWELSREDLKRDAEEK 518
Cdd:pfam02463 396 ELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQElkLLKDELELKKSEDLLK 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 519 LASMFLELREKAESEKLSIINRFELRESSMRHLQDQQAAQISDLE-RSLREQQGHLRQLEQELTRDEVLLCSQCGKEPSV 597
Cdd:pfam02463 476 ETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVgGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSA 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 598 AQDEKSAILLR----------------EKEDCALQLLTAQNRFLEERKEIMEKFAKEQDAFLLDTQEKHSHELQLLQQGH 661
Cdd:pfam02463 556 TADEVEERQKLvraltelplgarklrlLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELT 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 662 QQQLLALRMELETKHHSELTEQLASLESKQQALLEthvaKMQVKHDAEISALEKRHLSNLDELESCYVADIQTIRDEhKK 741
Cdd:pfam02463 636 KLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSE----LTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQRE-KE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 742 ALELLRAELEEQLQKKDSCHREILTQELEKLKLKHAEELQSVRNSLRVKMSAQHTESgkgpaadlQGAHQQKAPAMALHN 821
Cdd:pfam02463 711 ELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKS--------ELSLKEKELAEEREK 782
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 822 EGHQLEEDGDAALGGADTEDLQHHAEPREREGPHTVEMQTSQTELAKPQELQASQDQGAQVRDQVFLLSRELEECRG--E 899
Cdd:pfam02463 783 TEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLeeE 862
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958758587 900 LEQLQQRRERENQEGATLICMLRADVDLAQSEGKALRDALRRLLDLFGETLKAAVTLKSRISERAGLLLDHED 972
Cdd:pfam02463 863 ITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEE 935
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1052-1296 |
2.81e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 2.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1052 DMALDSSKQLEDARQLhrcvEKEFR--HRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKAdlQE 1129
Cdd:COG4913 215 EYMLEEPDTFEAADAL----VEHFDdlERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFA--QR 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1130 ALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLwnqketftnEAKEREAGtpvsaGREDAALQKEVESLTRDq 1209
Cdd:COG4913 289 RLELLEAELEELRAELARLEAELERLEARLDALREELDEL---------EAQIRGNG-----GDRLEQLEREIERLERE- 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1210 wesRKQSEKDRATLLSQMRVLESELEDQLvqhrgcAQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEF--- 1286
Cdd:COG4913 354 ---LEERERRRARLEALLAALGLPLPASA------EEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELrel 424
|
250
....*....|
gi 1958758587 1287 QQEIKWLEGQ 1296
Cdd:COG4913 425 EAEIASLERR 434
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1052-1434 |
2.88e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 2.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1052 DMALDSSKQLEDARQLHRCVEKEFRHRDE-EMAQAVQKQQELLERLREESAAKDRL---ALELHTAEGLLEgfKVEKADL 1127
Cdd:PTZ00121 1381 DAAKKKAEEKKKADEAKKKAEEDKKKADElKKAAAAKKKADEAKKKAEEKKKADEAkkkAEEAKKADEAKK--KAEEAKK 1458
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1128 QEALGKKEESEQQLivelEDLRKQLQQASR--ELLTLKEENSVLWNQKETFTNEAKEREAGTPVSAGREDAALQKEVESL 1205
Cdd:PTZ00121 1459 AEEAKKKAEEAKKA----DEAKKKAEEAKKadEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAK 1534
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1206 TRDqwESRKQSEKDRATLLSQMRVLESELEDQLVQHrgcAQLAEEVTTLKQQLATLDKHLRSQRqfmdeqaaeREHEREE 1285
Cdd:PTZ00121 1535 KAD--EAKKAEEKKKADELKKAEELKKAEEKKKAEE---AKKAEEDKNMALRKAEEAKKAEEAR---------IEEVMKL 1600
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1286 FQQEIKWLEGQLRQATRPRPPGPRDSQCAKLDEEVELLQEKLREKLDGFNELviKKdlADQQLLIQEEEIKHLEETNeni 1365
Cdd:PTZ00121 1601 YEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL--KK--AEEENKIKAAEEAKKAEED--- 1673
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958758587 1366 QRQMAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSE 1434
Cdd:PTZ00121 1674 KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED 1742
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1031-1408 |
2.89e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.04 E-value: 2.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1031 ECEQPIRKVYQSLSTA---VEGLLDMALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLA 1107
Cdd:PRK02224 325 ELRDRLEECRVAAQAHneeAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAP 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1108 LELHTAEGLLEGFKVEK-----------ADLQEALGKKEESEQQL----------------IVE-LEDLRKQLQQASREL 1159
Cdd:PRK02224 405 VDLGNAEDFLEELREERdelrereaeleATLRTARERVEEAEALLeagkcpecgqpvegspHVEtIEEDRERVEELEAEL 484
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1160 LTLKEENSVLwnqketftnEAKEREAGTPVSAGREDAALQKEVESLTRDQWESRKQSEKDRATLlSQMRVLESELEDQLV 1239
Cdd:PRK02224 485 EDLEEEVEEV---------EERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERA-EELRERAAELEAEAE 554
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1240 QHRGCAQLA--------EEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHereefqqeikwleGQLRQATRPRppgpRDS 1311
Cdd:PRK02224 555 EKREAAAEAeeeaeearEEVAELNSKLAELKERIESLERIRTLLAAIADA-------------EDEIERLREK----REA 617
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1312 QCAKLDEEVELLQEK------LREKLDG--FNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRST 1383
Cdd:PRK02224 618 LAELNDERRERLAEKrerkreLEAEFDEarIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELR 697
|
410 420
....*....|....*....|....*
gi 1958758587 1384 EELEVVNSRNSEIEELKAIIEHLQE 1408
Cdd:PRK02224 698 ERREALENRVEALEALYDEAEELES 722
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1198-1540 |
3.18e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.67 E-value: 3.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1198 LQKEVESLTRDQWESRKQSEKDRATLLSQMRVLESELEDQLVQHrgcAQLAEEVTTLKQQLATLDKHL---RSQRQFMDE 1274
Cdd:TIGR02168 205 LERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEEL---KEAEEELEELTAELQELEEKLeelRLEVSELEE 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1275 QAAEREHEREEFQQEIkwlegqlrqatrprppgprdsqcAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEE 1354
Cdd:TIGR02168 282 EIEELQKELYALANEI-----------------------SRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1355 IKHLEETNENIQRQMAQLQEELEKqrrsteelevvnsRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQlhevIEKLQSE 1434
Cdd:TIGR02168 339 LAELEEKLEELKEELESLEAELEE-------------LEAELEELESRLEELEEQLETLRSKVAQLELQ----IASLNNE 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1435 LSLMGPTVhEMSDLPPGSLHTELSCLQAEgmggqALHNELQAAQAAKGAFGQLLAD-HGHSQALEALQERLQDAEAAAAR 1513
Cdd:TIGR02168 402 IERLEARL-ERLEDRRERLQQEIEELLKK-----LEEAELKELQAELEELEEELEElQEELERLEEALEELREELEEAEQ 475
|
330 340
....*....|....*....|....*..
gi 1958758587 1514 HLTELEHCVALRQAEVEAMASRIQEFE 1540
Cdd:TIGR02168 476 ALDAAERELAQLQARLDSLERLQENLE 502
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
486-1432 |
3.34e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.97 E-value: 3.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 486 AEEKIELMKQEFQKKEAEwELSREDLKRDAEEKLasmfLELREKAESEKLSIINRFELRESSMRHLQDQQAA----QISD 561
Cdd:pfam02463 143 KIEIIAMMKPERRLEIEE-EAAGSRLKRKKKEAL----KKLIEETENLAELIIDLEELKLQELKLKEQAKKAleyyQLKE 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 562 LERSLREQQGHLRQLEQELTRDEVLLcsqcGKEPSVAQDEKSAILLREKEDCALQLLTAQNRFLEERKEIMEKFAKEQDA 641
Cdd:pfam02463 218 KLELEEEYLLYLDYLKLNEERIDLLQ----ELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAK 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 642 FLldtQEKHSHELQLLQQGHQQQLLALRMELETKHHSELTEQLASLESKQQALLETHVAKMQvKHDAEISALEKRHLSNL 721
Cdd:pfam02463 294 EE---EELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKRE-AEEEEEEELEKLQEKLE 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 722 DELEscyvaDIQTIRDEHKKALELLRAELEEQLQKKDSCHREILTQ-ELEKLKLKHAEELQSVRNSLrvkmsaqhtESGK 800
Cdd:pfam02463 370 QLEE-----ELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLlELARQLEDLLKEEKKEELEI---------LEEE 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 801 GPAADLQGAHQQKApamalhneghQLEEDGDAALGGADTEDLQHHAEPREREGPHTVEMQTSQTELAKPQELQASQDQGA 880
Cdd:pfam02463 436 EESIELKQGKLTEE----------KEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKA 505
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 881 QVRDQVFLLSRELEEcrGELEQLQQRRERENQEGATLICMLRADVDLAQSEGKALRDALRRLLDLFGETLKAAVTLKSRI 960
Cdd:pfam02463 506 RSGLKVLLALIKDGV--GGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLL 583
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 961 SERAGLLLDHeDAVDTSGAQLAAAALGEMWPDEGLLDIDRTLPEGAEtSSVCEISSHVCESFFMSPENTQECEQPIRKVY 1040
Cdd:pfam02463 584 IPKLKLPLKS-IAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGIL-KDTELTKLKESAKAKESGLRKGVSLEEGLAEK 661
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1041 QSLSTAVEGLLDMALDSSKQLEDARQLHRcvEKEFRHRDEEMAQAVQKQQELLERLREEsaAKDRLALELHTAEGLLEG- 1119
Cdd:pfam02463 662 SEVKASLSELTKELLEIQELQEKAESELA--KEEILRRQLEIKKKEQREKEELKKLKLE--AEELLADRVQEAQDKINEe 737
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1120 FKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAGTPVSAGREDAALQ 1199
Cdd:pfam02463 738 LKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELL 817
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1200 KEVESLtrdqwesRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAER 1279
Cdd:pfam02463 818 EEEQLL-------IEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELES 890
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1280 EHEREEFQQEIKWLEGQlrqatrprppgpRDSQCAKLDEEVELLQEKLREKLDGFNELviKKDLADQQLLIQEEEIKHLE 1359
Cdd:pfam02463 891 KEEKEKEEKKELEEESQ------------KLNLLEEKENEIEERIKEEAEILLKYEEE--PEELLLEEADEKEKEENNKE 956
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958758587 1360 ETNENIQRQMAQLQEELEKQRRSTEELEVVNSRNSEIEElkaiiehlqenqeQLQKAKAEEIEQLHEVIEKLQ 1432
Cdd:pfam02463 957 EEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDEL-------------EKERLEEEKKKLIRAIIEETC 1016
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1074-1426 |
3.37e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.65 E-value: 3.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1074 EFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQ 1153
Cdd:PRK02224 245 EHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1154 QASRELLTLKEENSVLWNQKETFTNEAKEREagTPVSAGREDAA-LQKEVESlTRDQWESRkqsEKDRATLLSQMRVLES 1232
Cdd:PRK02224 325 ELRDRLEECRVAAQAHNEEAESLREDADDLE--ERAEELREEAAeLESELEE-AREAVEDR---REEIEELEEEIEELRE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1233 ELEDQLVQHRGCA----QLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREH-----------------EREEFQQEIK 1291
Cdd:PRK02224 399 RFGDAPVDLGNAEdfleELREERDELREREAELEATLRTARERVEEAEALLEAgkcpecgqpvegsphveTIEEDRERVE 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1292 WLEGQLRQAtrprppgprDSQCAKLDEEVELLqEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQ 1371
Cdd:PRK02224 479 ELEAELEDL---------EEEVEEVEERLERA-EDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAE 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1372 LQEELEKQRRSTEE----------------------------LEVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQ 1423
Cdd:PRK02224 549 LEAEAEEKREAAAEaeeeaeeareevaelnsklaelkeriesLERIRTLLAAIADAEDEIERLREKREALAELNDERRER 628
|
...
gi 1958758587 1424 LHE 1426
Cdd:PRK02224 629 LAE 631
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1340-1562 |
3.80e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 3.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1340 KKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELE-VVNSRNSEIEELKAIIEHLQENQEQLQKAKA 1418
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALArRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1419 EEIEQLHEVIEKLQselsLMGPTVHEMSDLPPGSLHTELSCLQAEGMGGQALHNELQAAQAAKGAFGQLladhghSQALE 1498
Cdd:COG4942 101 AQKEELAELLRALY----RLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAL------RAELE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958758587 1499 ALQERLQDAEAAAARHLTELEHCVALRQAEVEAMASRIQEFEATLKAKEAIIVQRDLEIDAVNK 1562
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
234-534 |
3.84e-05 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 49.24 E-value: 3.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 234 ETLRKELSAKHQSEMEGLQNQFQKELSEQKaelekifqaKHEAEVSLKNLEAQHQAAIRKlQEDLRSEHCQYLQDLELRF 313
Cdd:NF033838 109 EKSEAELTSKTKKELDAAFEQFKKDTLEPG---------KKVAEATKKVEEAEKKAKDQK-EEDRRNYPTNTYKTLELEI 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 314 REKE-KAKELELETLQAsyEDLKAQSQEEIRHLWSQLESMKtnreeqngswepllAQASHLEELQHLRsdfaqqqqqERA 392
Cdd:NF033838 179 AESDvEVKKAELELVKE--EAKEPRDEEKIKQAKAKVESKK--------------AEATRLEKIKTDR---------EKA 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 393 QHESEL---EHLRVYFEKKLNDAEKTYQEDLTVFQQRLQEAREESLESAEISSSCMFPEETsgrerkePPDPlDLQLEQP 469
Cdd:NF033838 234 EEEAKRradAKLKEAVEKNVATSEQDKPKRRAKRGVLGEPATPDKKENDAKSSDSSVGEET-------LPSP-SLKPEKK 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 470 KAQGS-LIEDYQEKLSNAEEK--------------IELMKQEFQKKEAEWELSREDLKRDA-EEKLAsmflELREKAESE 533
Cdd:NF033838 306 VAEAEkKVEEAKKKAKDQKEEdrrnyptntyktleLEIAESDVKVKEAELELVKEEAKEPRnEEKIK----QAKAKVESK 381
|
.
gi 1958758587 534 K 534
Cdd:NF033838 382 K 382
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2292-2562 |
4.09e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.55 E-value: 4.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2292 RHLQRegQSSRALEELKISLEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRCEAL---LAQEKGQLSELRKSLEAER 2368
Cdd:COG1196 203 EPLER--QAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELeaeLAELEAELEELRLELEELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2369 srsLELSEALQHERLLTEQLSRnaqeacarqdtqaqhaLLRKLKAEKARALELEAMLEKvqkqaahtqqqleaQAqercL 2448
Cdd:COG1196 281 ---LELEEAQAEEYELLAELAR----------------LEQDIARLEERRRELEERLEE--------------LE----E 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2449 ELRREKEvsgnlrsavdALQTHKQElgccLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDkRKWQRV 2528
Cdd:COG1196 324 ELAELEE----------ELEELEEE----LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE-ELAEEL 388
|
250 260 270
....*....|....*....|....*....|....
gi 1958758587 2529 KEKLRELELQRQRDEHKIEQLQRLVRELRWKEEA 2562
Cdd:COG1196 389 LEALRAAAELAAQLEELEEAEEALLERLERLEEE 422
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2087-2562 |
4.46e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.37 E-value: 4.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2087 LVKKLEKVIQEQGDLQKVREHAclpDRSSLLAEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELL 2166
Cdd:PTZ00121 1320 AKKKAEEAKKKADAAKKKAEEA---KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2167 AYKVEQEKCIANDLQKTLSKEQEA------ASDVRKRLMVEQGAVQDLKSELHACKQENTNLLESLDKVQQEVLRlrygh 2240
Cdd:PTZ00121 1397 KKKAEEDKKKADELKKAAAAKKKAdeakkkAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK----- 1471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2241 vtwsysgtSSASAGRAVLDGKENELKVVLEElecERGKGQVLQAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNnq 2320
Cdd:PTZ00121 1472 --------ADEAKKKAEEAKKADEAKKKAEE---AKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADE-- 1538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2321 lcvALKHERAAKDNLQKELQiEASRCEALLAQEKGQLSELRKSL---EAERSRSLELSEALQHERLLTEQLSRNAQEACA 2397
Cdd:PTZ00121 1539 ---AKKAEEKKKADELKKAE-ELKKAEEKKKAEEAKKAEEDKNMalrKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKK 1614
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2398 RQDTQAQHALLRKLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKEVSGNLRSAVDALQTHKQELGCC 2477
Cdd:PTZ00121 1615 AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL 1694
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2478 LEREREKAAWLQAELEQLSARVKQQEARQDEK----RMDRRSSREDLDKRKwqrvKEKLRELELQRQRDEHKIEQLQRLV 2553
Cdd:PTZ00121 1695 KKEAEEAKKAEELKKKEAEEKKKAEELKKAEEenkiKAEEAKKEAEEDKKK----AEEAKKDEEEKKKIAHLKKEEEKKA 1770
|
....*....
gi 1958758587 2554 RELRWKEEA 2562
Cdd:PTZ00121 1771 EEIRKEKEA 1779
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
168-507 |
4.72e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.97 E-value: 4.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 168 ALLQSRQQCELELMREQHAR-EKEEMA--LRNEQETAELKEKFRSEMEKTVQM-METLKQDWESERELclETLRKElsaK 243
Cdd:pfam17380 283 AVSERQQQEKFEKMEQERLRqEKEEKAreVERRRKLEEAEKARQAEMDRQAAIyAEQERMAMEREREL--ERIRQE---E 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 244 HQSEMEGLQNQFQKELSEQKAELEKI-FQAKHEAEVSLKNLEAQHQAAIrkLQEDLRSEHCQYLQDLELRFREKEKAKEL 322
Cdd:pfam17380 358 RKRELERIRQEEIAMEISRMRELERLqMERQQKNERVRQELEAARKVKI--LEEERQRKIQQQKVEMEQIRAEQEEARQR 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 323 ELETLQASYEDLKAQSQEEIRHLWSQLESMKTNREEQNGSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHESELEHLR 402
Cdd:pfam17380 436 EVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKR 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 403 VYFEKKLNDAEKTYQEdltvfQQRLQEAREESLESAEIssscmfpeetsgRERKeppdpldlqleQPKAQGSLIEDYQEK 482
Cdd:pfam17380 516 KLLEKEMEERQKAIYE-----EERRREAEEERRKQQEM------------EERR-----------RIQEQMRKATEERSR 567
|
330 340
....*....|....*....|....*..
gi 1958758587 483 LSNAEEKIELMKQ--EFQKKEAEWELS 507
Cdd:pfam17380 568 LEAMEREREMMRQivESEKARAEYEAT 594
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
128-563 |
5.53e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.96 E-value: 5.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 128 SLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQeLALLQSRQQCELELMREQHAREKEEMALRNEQETAELKEKF 207
Cdd:pfam15921 209 SMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQ-LEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKA 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 208 RSEMEKTVQMMETLKQDWESERElcletlRKELSAKHQSEMEGLQNQFQKELSEqkaelekifqAKHEAEVSLKNLEAQH 287
Cdd:pfam15921 288 SSARSQANSIQSQLEIIQEQARN------QNSMYMRQLSDLESTVSQLRSELRE----------AKRMYEDKIEELEKQL 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 288 QAAIRKLQEdLRSEHCQY----------LQDLELRFREKEKAKELELETLQASYeDLKAQSQEEIRHLWSQLES------ 351
Cdd:pfam15921 352 VLANSELTE-ARTERDQFsqesgnlddqLQKLLADLHKREKELSLEKEQNKRLW-DRDTGNSITIDHLRRELDDrnmevq 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 352 -----MKTNREEQNGSWEPLLAQASHLEELQHLRSDFAqqqqqerAQHESELEHLRVYFEK------KLNDAEKTYQeDL 420
Cdd:pfam15921 430 rlealLKAMKSECQGQMERQMAAIQGKNESLEKVSSLT-------AQLESTKEMLRKVVEEltakkmTLESSERTVS-DL 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 421 TVFQQRLQEAREESleSAEIssscmfpeeTSGRERkeppdpLDLQLEQPKAqgslIEDYQEKLSNAEEKIELMKQEFQKK 500
Cdd:pfam15921 502 TASLQEKERAIEAT--NAEI---------TKLRSR------VDLKLQELQH----LKNEGDHLRNVQTECEALKLQMAEK 560
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958758587 501 EAEWELSR---EDLKRDAEEKLASMFLELREKAESEKLSIINRFELREssMRHLQDQQAAQISDLE 563
Cdd:pfam15921 561 DKVIEILRqqiENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQE--FKILKDKKDAKIRELE 624
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1087-1411 |
5.69e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.97 E-value: 5.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1087 QKQQELLERLREES--AAKDRLALELHTAEGLLEGFKVEKADL---------QEALGKKEESEQQLIvELEDLRKQLQQA 1155
Cdd:pfam17380 287 RQQQEKFEKMEQERlrQEKEEKAREVERRRKLEEAEKARQAEMdrqaaiyaeQERMAMERERELERI-RQEERKRELERI 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1156 SRELLTLkEENSVLWNQKETFTNEAKEREAGTPVSAGREDAALQKE----VESLTRDQWESRKQSEKDRATllsQMRVLE 1231
Cdd:pfam17380 366 RQEEIAM-EISRMRELERLQMERQQKNERVRQELEAARKVKILEEErqrkIQQQKVEMEQIRAEQEEARQR---EVRRLE 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1232 SELEDQLVQHRgcaqlaEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRprppgprds 1311
Cdd:pfam17380 442 EERAREMERVR------LEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQ--------- 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1312 qcakldeevELLQEKLREKLdgfnelvIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNS 1391
Cdd:pfam17380 507 ---------AMIEEERKRKL-------LEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEA 570
|
330 340
....*....|....*....|
gi 1958758587 1392 RNSEIEELKAIIEHLQENQE 1411
Cdd:pfam17380 571 MEREREMMRQIVESEKARAE 590
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
121-357 |
7.59e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.58 E-value: 7.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 121 ELEALRLSLNNMHTAQLELTQANLQKEKETALTEL---REMLNGRRAQELALLQSRQQCELELMREQHAREKEEMALRNE 197
Cdd:pfam17380 349 ELERIRQEERKRELERIRQEEIAMEISRMRELERLqmeRQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAE 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 198 QETAELKEKFRSEMEKTVQmMETLKQDwESERELCLETLRKELSAKHQSEMEGLQNQFQKELSEQKAE--LEKIFQAKHE 275
Cdd:pfam17380 429 QEEARQREVRRLEEERARE-MERVRLE-EQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRkiLEKELEERKQ 506
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 276 AEVSLKNLEaqhqaaiRKLQEDLRSEHCQYLQDLELRFREKEKAKELELETLQASYEDLKAQSQEEirhlwSQLESMKTN 355
Cdd:pfam17380 507 AMIEEERKR-------KLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEER-----SRLEAMERE 574
|
..
gi 1958758587 356 RE 357
Cdd:pfam17380 575 RE 576
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
146-581 |
9.94e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 9.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 146 KEKETALTELREMLNG--RRAQELALLQSR-QQCELELMREQHAREKEEMALRNEQETAELKEKFRSEMEKTVQMMETLK 222
Cdd:PRK03918 210 NEISSELPELREELEKleKEVKELEELKEEiEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELK 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 223 QDWESERELC--LETLRKELS------AKHQSEMEGLQNQFqKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQA--AIR 292
Cdd:PRK03918 290 EKAEEYIKLSefYEEYLDELReiekrlSRLEEEINGIEERI-KELEEKEERLEELKKKLKELEKRLEELEERHELyeEAK 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 293 KLQEDLRsehcqylqdlelrfREKEKAKELELETLQASYEDL---KAQSQEEIRHLWSQLESMKTNREEQNGSwepllaq 369
Cdd:PRK03918 369 AKKEELE--------------RLKKRLTGLTPEKLEKELEELekaKEEIEEEISKITARIGELKKEIKELKKA------- 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 370 ashLEELQHLRSDFAQQQQQERAQHESELehLRVYfEKKLNDAEKTYQEdltvFQQRLQEAREE--SLESAEISSSCMFP 447
Cdd:PRK03918 428 ---IEELKKAKGKCPVCGRELTEEHRKEL--LEEY-TAELKRIEKELKE----IEEKERKLRKElrELEKVLKKESELIK 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 448 EETSGRERKEppdpldlqleqpkAQGSLIEDYQEKLSNAEEKIELMKQEFQKKEAEWELSREDLKR--DAEEKLASMFLE 525
Cdd:PRK03918 498 LKELAEQLKE-------------LEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKleELKKKLAELEKK 564
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958758587 526 LREkAESEKLSIINR--------FELRESSMRHLQD--QQAAQISDLERSLREQQGHLRQLEQELT 581
Cdd:PRK03918 565 LDE-LEEELAELLKEleelgfesVEELEERLKELEPfyNEYLELKDAEKELEREEKELKKLEEELD 629
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2296-2562 |
1.37e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2296 REGQSSRALEELKISLEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELRKSLEaERSRSLELS 2375
Cdd:PTZ00121 1243 KKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAE-EAKKADEAK 1321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2376 EALQHERLLTEQLSRNAQEACARQDTQAQHALLRKLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKE 2455
Cdd:PTZ00121 1322 KKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAE 1401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2456 VSGNLRSAVDALQTHKQELGCCLEREREKAAWLQAELEQLSARvKQQEARQ--DEKRMDRRSSREDLDKRKWQRVKEKLR 2533
Cdd:PTZ00121 1402 EDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAK-KADEAKKkaEEAKKAEEAKKKAEEAKKADEAKKKAE 1480
|
250 260 270
....*....|....*....|....*....|.
gi 1958758587 2534 ElelQRQRDE--HKIEQLQRLVRELRWKEEA 2562
Cdd:PTZ00121 1481 E---AKKADEakKKAEEAKKKADEAKKAAEA 1508
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1058-1427 |
1.54e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 47.73 E-value: 1.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1058 SKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEglLEGFKVEKADLQEALGKKEES 1137
Cdd:TIGR00606 446 KEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKE--VKSLQNEKADLDRKLRKLDQE 523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1138 EQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKE-----------REAGTPVSAGRED-AALQKEVESL 1205
Cdd:TIGR00606 524 MEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYfpnkkqledwlHSKSKEINQTRDRlAKLNKELASL 603
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1206 TRDQWESRKQSEKDRATLLSqmrvleseLEDQLVQHRGC-------AQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAE 1278
Cdd:TIGR00606 604 EQNKNHINNELESKEEQLSS--------YEDKLFDVCGSqdeesdlERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDE 675
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1279 RE------HEREEFQQEIKWLEGQLRQATRPRPpgprdsqcakldEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQE 1352
Cdd:TIGR00606 676 NQsccpvcQRVFQTEAELQEFISDLQSKLRLAP------------DKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKE 743
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958758587 1353 EEIKHLEETNENIQRQMAQLQEELEKQRRsteELEVVNSRNSEIEELK---AIIEHLQENQEQLQKAKAEEIEQLHEV 1427
Cdd:TIGR00606 744 KEIPELRNKLQKVNRDIQRLKNDIEEQET---LLGTIMPEEESAKVCLtdvTIMERFQMELKDVERKIAQQAAKLQGS 818
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
2319-2562 |
1.90e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.04 E-value: 1.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2319 NQLCVALKHERAAKDNLQKElQIEASRCEALLAQEKGQLSEL---RKSLEAERSRSLELSEAL----QHERLLTE---QL 2388
Cdd:pfam17380 272 NQLLHIVQHQKAVSERQQQE-KFEKMEQERLRQEKEEKAREVerrRKLEEAEKARQAEMDRQAaiyaEQERMAMErerEL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2389 SRNAQEACARQDTQAQHallRKLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKEVSGNLRSAV---- 2464
Cdd:pfam17380 351 ERIRQEERKRELERIRQ---EEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEqira 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2465 ---DALQTHKQELGCCLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRVKEKLRELELQRQR 2541
Cdd:pfam17380 428 eqeEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQA 507
|
250 260
....*....|....*....|.
gi 1958758587 2542 DEHKIEQLQRLVRELRWKEEA 2562
Cdd:pfam17380 508 MIEEERKRKLLEKEMEERQKA 528
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1089-1434 |
1.99e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 46.81 E-value: 1.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1089 QQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSV 1168
Cdd:pfam07888 40 LQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDA 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1169 LWNQKETFTNEAKEREAGTPVSAGR----------------EDAALQKEVESLTRDQWESRKQSEKDRATLLSQMRVLES 1232
Cdd:pfam07888 120 LLAQRAAHEARIRELEEDIKTLTQRvleretelermkerakKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRN 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1233 ELEDQLVQhrgCAQLAEEVTTLKQQLATLDKHlRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRPRPPGPRDSQ 1312
Cdd:pfam07888 200 SLAQRDTQ---VLQLQDTITTLTQKLTTAHRK-EAENEALLEELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAELH 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1313 CAKLdeEVELLQEKLREKldgfnELVIKKDLA----DQQLLIQEEEIKH--LEETNENIQRQMAQLQEE-LEKQRRSTE- 1384
Cdd:pfam07888 276 QARL--QAAQLTLQLADA-----SLALREGRArwaqERETLQQSAEADKdrIEKLSAELQRLEERLQEErMEREKLEVEl 348
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958758587 1385 ------ELEVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSE 1434
Cdd:pfam07888 349 grekdcNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLEYIRQLEQRLETV 404
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
296-909 |
2.02e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.24 E-value: 2.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 296 EDLRSEHCQYLQDLElrfREKEKAKELEleTLQASYEDLKAQSQ-EEIRHLWSQLESMKTNREEQNGSWEPLLAQASHLE 374
Cdd:COG1196 192 EDILGELERQLEPLE---RQAEKAERYR--ELKEELKELEAELLlLKLRELEAELEELEAELEELEAELEELEAELAELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 375 -ELQHLRSDFAQQQQQERAQHESELEHLRvyfekklndAEKTYQEDLTVFQQRLQEAREESLEsaeissscmfpeetsgr 453
Cdd:COG1196 267 aELEELRLELEELELELEEAQAEEYELLA---------ELARLEQDIARLEERRRELEERLEE----------------- 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 454 erkeppdpLDLQLEQPKAQgslIEDYQEKLSNAEEKIELMKQEFQKKEAEWELSREDLKRDAEEKLASmfLELREKAESE 533
Cdd:COG1196 321 --------LEEELAELEEE---LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA--EEELEELAEE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 534 KLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDEVLLCSQCGKEPSVAQDEKSAILLREKEdc 613
Cdd:COG1196 388 LLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL-- 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 614 aLQLLTAQNRFLEERKEIMEKFAKEQDAFLLDTQEKHSHELQLLQQGHQQQLLALRmeLETKHHSELTEQLASLESKQQA 693
Cdd:COG1196 466 -AELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR--GLAGAVAVLIGVEAAYEAALEA 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 694 LLETHVAKMQVKHDAEISALEKRHLSNLDELESCYVADIQTIRDEHKKALELLRAELEEQLQKKDSCHREILTQELE--- 770
Cdd:COG1196 543 ALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGdtl 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 771 --------------KLKLKHAEELQSVRNSLRVKMSAQHTESGKGPAADLQGAHQQKAPAMALHNEGHQLEEDGDAALGG 836
Cdd:COG1196 623 lgrtlvaarleaalRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAE 702
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958758587 837 ADTEDLQHHAEPREREGPHTVEMQTSQTELAKPQELQASQDQGAQVRDQVFLLSRE---LEECRGELEQLQQRRER 909
Cdd:COG1196 703 EEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEppdLEELERELERLEREIEA 778
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1344-1559 |
2.07e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.36 E-value: 2.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1344 ADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVvnsrnsEIEELKAIIEHLQENQEQLQKAKAEEIEQ 1423
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQA------ELEALQAEIDKLQAEIAEAEAEIEERREE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1424 LHEVIEKLQSELSLMGPTVHEMSDLPPGSLHTELSCLQAEGMGGQALHNELQAAQAAKGAFGQLLADHGhsQALEALQER 1503
Cdd:COG3883 88 LGERARALYRSGGSVSYLDVLLGSESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKL--AELEALKAE 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958758587 1504 LQDAEAAAARHLTELEHCVALRQAEVEAMASRIQEFEATLKAKEAIIVQRDLEIDA 1559
Cdd:COG3883 166 LEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAA 221
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2262-2562 |
2.14e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 2.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2262 ENELKVVLEELECERGKGQVLQAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNNQ-LCVALKHERAAKDNLQKELQ 2340
Cdd:PTZ00121 1094 EEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKrVEIARKAEDARKAEEARKAE 1173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2341 iEASRCE-ALLAQEKGQLSELRKsleAERSRSLELSEALQHERLLTEqlSRNAQEAcaRQDTQAQHALLRKLKAEKARAL 2419
Cdd:PTZ00121 1174 -DAKKAEaARKAEEVRKAEELRK---AEDARKAEAARKAEEERKAEE--ARKAEDA--KKAEAVKKAEEAKKDAEEAKKA 1245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2420 ELEAMLEKVQK-QAAHTQQQLEAQAQERCLELRREKEV--SGNLRSAVDALQTHKQELGCCLEREREKA-----AWLQAE 2491
Cdd:PTZ00121 1246 EEERNNEEIRKfEEARMAHFARRQAAIKAEEARKADELkkAEEKKKADEAKKAEEKKKADEAKKKAEEAkkadeAKKKAE 1325
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958758587 2492 LEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRVKEKLRELELQRQRDEHKIEQLQRLVRELRWKEEA 2562
Cdd:PTZ00121 1326 EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1117-1433 |
2.67e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.55 E-value: 2.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1117 LEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNeakereagtpvsagrEDA 1196
Cdd:TIGR04523 386 IKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTN---------------QDS 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1197 ALQKEVESLTRdqweSRKQSEKDRATLLSQMRVLESELEdqlvqhrgcaQLAEEVTTLKQQLatldKHLRSQRQFMDEQA 1276
Cdd:TIGR04523 451 VKELIIKNLDN----TRESLETQLKVLSRSINKIKQNLE----------QKQKELKSKEKEL----KKLNEEKKELEEKV 512
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1277 AEREHEREEFQQEIKWLEgqlrqatrprppgprdSQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQlliqeEEIK 1356
Cdd:TIGR04523 513 KDLTKKISSLKEKIEKLE----------------SEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKN-----KEIE 571
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958758587 1357 HLEETNENIQRQMAQLQEELEKQRRSTEELevvnsrNSEIEELKAIIEHLqenQEQLQKAKAEEiEQLHEVIEKLQS 1433
Cdd:TIGR04523 572 ELKQTQKSLKKKQEEKQELIDQKEKEKKDL------IKEIEEKEKKISSL---EKELEKAKKEN-EKLSSIIKNIKS 638
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1316-1434 |
2.67e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 46.39 E-value: 2.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1316 LDEEVELLQEKLREKLDGFNELVIKKDLADQQLLiqEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELE-------- 1387
Cdd:COG2433 378 IEEALEELIEKELPEEEPEAEREKEHEERELTEE--EEEIRRLEEQVERLEAEVEELEAELEEKDERIERLErelsears 455
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958758587 1388 ----------VVNSRNSEIEELKAIIEHLQENQEQLQkakaEEIEQLHEVIEKLQSE 1434
Cdd:COG2433 456 eerreirkdrEISRLDREIERLERELEEERERIEELK----RKLERLKELWKLEHSG 508
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1340-1519 |
2.88e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 2.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1340 KKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEV---VNSRNSEIEELKAIIEHLQEN------- 1409
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDeidVASAEREIAELEAELERLDASsddlaal 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1410 QEQLQKAKAeEIEQLHEVIEKLQSELSLMGPTVHEMSDLPPgSLHTELSclQAEGMGGQALHNELQAaqaakgAFGQLLA 1489
Cdd:COG4913 691 EEQLEELEA-ELEELEEELDELKGEIGRLEKELEQAEEELD-ELQDRLE--AAEDLARLELRALLEE------RFAAALG 760
|
170 180 190
....*....|....*....|....*....|
gi 1958758587 1490 DHGHSQALEALQERLQDAEAAAARHLTELE 1519
Cdd:COG4913 761 DAVERELRENLEERIDALRARLNRAEEELE 790
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
188-913 |
3.53e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.50 E-value: 3.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 188 EKEEMALRNEQETAELKEKFRSEMEKTVQMMETLKQDWESERELCLETLRKELsakhqseMEGLQNQFQKELSEQKAELE 267
Cdd:TIGR00618 153 EFAQFLKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQL-------LTLCTPCMPDTYHERKQVLE 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 268 KIFQAKHEAEVSLKNLEAQHQAAIRKLQEDLRSEH-CQYLQDLELRFREKEKAKELELETLQASYEDLK--------AQS 338
Cdd:TIGR00618 226 KELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQlLKQLRARIEELRAQEAVLEETQERINRARKAAPlaahikavTQI 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 339 QEEIRHLWSQLESMKTNREEQNGSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHESELEhLRVYFEKKLNDAE--KTY 416
Cdd:TIGR00618 306 EQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATS-IREISCQQHTLTQhiHTL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 417 QEDLTVFQQRLQEAREESLesaeissscmfpeetsgRERKEPPDPLDLQLEQPKAQGSLIedYQEKLSNAEEKIELMKQE 496
Cdd:TIGR00618 385 QQQKTTLTQKLQSLCKELD-----------------ILQREQATIDTRTSAFRDLQGQLA--HAKKQQELQQRYAELCAA 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 497 FQKKEAEWELSREDLKRDAEEKLasmflelreKAESEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQL 576
Cdd:TIGR00618 446 AITCTAQCEKLEKIHLQESAQSL---------KEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPA 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 577 EQELTRDEVLLCSQCGKEPSVAQDEKS--------------AILLREKEDCALQLLTAQNRFLEERKEIMEKFAKEQDAF 642
Cdd:TIGR00618 517 RQDIDNPGPLTRRMQRGEQTYAQLETSeedvyhqltserkqRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRL 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 643 LLDTQEKHSHELQLLQQGHQQQLlalrmELETKHHSELTEQLASLESKQQALLETHVAKMQV---KHDAEISALekrhLS 719
Cdd:TIGR00618 597 QDLTEKLSEAEDMLACEQHALLR-----KLQPEQDLQDVRLHLQQCSQELALKLTALHALQLtltQERVREHAL----SI 667
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 720 NLDELESCYVADIQTIRDEHKKALELLRAELeeqLQKKDSCHREILTQELEKLKlkHAEELQSVRNSLRVKMSAQ---HT 796
Cdd:TIGR00618 668 RVLPKELLASRQLALQKMQSEKEQLTYWKEM---LAQCQTLLRELETHIEEYDR--EFNEIENASSSLGSDLAARedaLN 742
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 797 ESGKGPAADLQGAHQQKAPAMALHNEGHQLEEDGDAALGGADTEDLQHHAEPREREGP-HTVEMQTSQTELAKPQELQAS 875
Cdd:TIGR00618 743 QSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLlKTLEAEIGQEIPSDEDILNLQ 822
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|..
gi 1958758587 876 QDQGAQVRDQVFLLSRE--------------LEECRGELEQLQQRRERENQE 913
Cdd:TIGR00618 823 CETLVQEEEQFLSRLEEksatlgeithqllkYEECSKQLAQLTQEQAKIIQL 874
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2118-2404 |
3.54e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.59 E-value: 3.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2118 AEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQRE------HQLRRQVELLAYKVEQEKCIANDLQKTLSKEQEAA 2191
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEqlrkelEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2192 SDVRKRLMVEQGAVQDLKSELHACKQENTNLLESLDKVQQEvlrlryghvtwsysgtssASAGRAVLDGKENELKVVLEE 2271
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE------------------LKALREALDELRAELTLLNEE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2272 LEcERGKGQVLQAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNNQLCVALKHERAAKDNLQKELqieasrcEALLA 2351
Cdd:TIGR02168 819 AA-NLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASL-------EEALA 890
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1958758587 2352 QEKGQLSELRKSLEAERSRSLELSEALQHERLLTEQLSRNAQEACARQDTQAQ 2404
Cdd:TIGR02168 891 LLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| CorA |
pfam01544 |
CorA-like Mg2+ transporter protein; The CorA transport system is the primary Mg2+ influx ... |
1287-1436 |
3.88e-04 |
|
CorA-like Mg2+ transporter protein; The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. The family includes the MRS2 protein from yeast that is thought to be an RNA splicing protein. However its membership of this family suggests that its effect on splicing is due to altered magnesium levels in the cell.
Pssm-ID: 460246 [Multi-domain] Cd Length: 292 Bit Score: 45.38 E-value: 3.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1287 QQEIKWLEgQLRQATRPRPPGPRDSQcakldeevELLQEKLREKLDGFNELVikkDLADQQLLIQEEEIkhLEETNENIQ 1366
Cdd:pfam01544 85 HEPLPALD-EVRKRLTLLGGGPLDPG--------DLLYRLLDEIVDRFLELL---EKLEDELDELEDEL--EDETNNELL 150
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958758587 1367 RQMAQLQEELEK-------QRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQLqkakAEEIEQLHEVIEKLQSELS 1436
Cdd:pfam01544 151 RELAALRRSLVYlrrsllpQRDVLNRLLRREDDPLLDDEQKEYLRDLLDRLERL----LEDLDALRERLRSLQDEYS 223
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2296-2550 |
7.35e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 7.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2296 REGQSSRALEELKISLEKQLAQNNQLCVALKHERAAKDNLQKELQI---EASRCEALLAQEKGQLSELRKSLEAERSRSL 2372
Cdd:TIGR02169 682 RLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQleqEEEKLKERLEELEEDLSSLEQEIENVKSELK 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2373 ELSEALQH--ERLLTEQLSRNAQEA-CARQDTQAQHALLRKLKAE----KARALELEAMLEKVQkqaahtqqqleaqaqe 2445
Cdd:TIGR02169 762 ELEARIEEleEDLHKLEEALNDLEArLSHSRIPEIQAELSKLEEEvsriEARLREIEQKLNRLT---------------- 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2446 rcLELRREKEVSGNLRSAVDALQTHKQELGCCLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKrkw 2525
Cdd:TIGR02169 826 --LEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRE--- 900
|
250 260
....*....|....*....|....*
gi 1958758587 2526 qrVKEKLRELELQRQRDEHKIEQLQ 2550
Cdd:TIGR02169 901 --LERKIEELEAQIEKKRKRLSELK 923
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
224-688 |
7.81e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.03 E-value: 7.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 224 DWESERELCLETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAIRKLQE--DLRSE 301
Cdd:PRK02224 180 RVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREEleTLEAE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 302 HCQYLQDLELRFREKEKAKElELETLQASYEDLkaqsQEEIRHLWSQLESMKTNREeqngswepllAQASHLEELQhlrs 381
Cdd:PRK02224 260 IEDLRETIAETEREREELAE-EVRDLRERLEEL----EEERDDLLAEAGLDDADAE----------AVEARREELE---- 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 382 dfaqqqqQERAQHESELEHLRVYFEKKLNDAEkTYQEDLTVFQQRLQEAREESLESAEISSSCmfpeETSGRERKEPPDP 461
Cdd:PRK02224 321 -------DRDEELRDRLEECRVAAQAHNEEAE-SLREDADDLEERAEELREEAAELESELEEA----REAVEDRREEIEE 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 462 LDLQLEQPKAQgslIEDYQEKLSNAEEKIELM---KQEFQKKEAEWELSREDLKRDAEEklASMFLELREKAESEKlsii 538
Cdd:PRK02224 389 LEEEIEELRER---FGDAPVDLGNAEDFLEELreeRDELREREAELEATLRTARERVEE--AEALLEAGKCPECGQ---- 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 539 nrfELRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDEVLlcsqcgkepsvAQDEKSAILLREKEDCALQLL 618
Cdd:PRK02224 460 ---PVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDL-----------VEAEDRIERLEERREDLEELI 525
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 619 TAQNRFLEERKEIMEKFAKEQDAflLDTQEKHSHELQLLQQGHQQQLLALRMELETKhHSELTEQLASLE 688
Cdd:PRK02224 526 AERRETIEEKRERAEELRERAAE--LEAEAEEKREAAAEAEEEAEEAREEVAELNSK-LAELKERIESLE 592
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1097-1438 |
8.87e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.04 E-value: 8.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1097 REESAAKDRLA---LELHTAEGLLEGFKVEKADLQEALGKKEE------SEQQLIVELEDLRKQLQQASRELLTLKEENS 1167
Cdd:TIGR00606 584 KEINQTRDRLAklnKELASLEQNKNHINNELESKEEQLSSYEDklfdvcGSQDEESDLERLKEEIEKSSKQRAMLAGATA 663
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1168 VLwnqKETFTNEAKEREAGTPVSagREDAALQKEVESLTRDQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQL 1247
Cdd:TIGR00606 664 VY---SQFITQLTDENQSCCPVC--QRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSI 738
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1248 AE----EVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQE---------IKWLEGQLRQATRPRPPGPRDSQCA 1314
Cdd:TIGR00606 739 IDlkekEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAkvcltdvtiMERFQMELKDVERKIAQQAAKLQGS 818
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1315 KLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEV----VN 1390
Cdd:TIGR00606 819 DLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVElsteVQ 898
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1958758587 1391 SRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSELSLM 1438
Cdd:TIGR00606 899 SLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDI 946
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
2292-2557 |
1.00e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.95 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2292 RHLQREGQSSRALEELKISLEKQlaqnnQLCVALKHERAAkdnlqkELQIEASRCEALLAQEKGQLSELRKSLEAERSRS 2371
Cdd:PRK04863 345 RQQEKIERYQADLEELEERLEEQ-----NEVVEEADEQQE------ENEARAEAAEEEVDELKSQLADYQQALDVQQTRA 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2372 LELSEALQ----------------------------HERLLTEQLSRNAQEACARQDTQAQHA----LLRKLKAEKAR-- 2417
Cdd:PRK04863 414 IQYQQAVQalerakqlcglpdltadnaedwleefqaKEQEATEELLSLEQKLSVAQAAHSQFEqayqLVRKIAGEVSRse 493
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2418 ----ALELEAMLEKVQKQAAHTQQQLEAQAqerclELRREKEvsgNLRSAVDALQTHKQELGCCLEREREKAAwLQAELE 2493
Cdd:PRK04863 494 awdvARELLRRLREQRHLAEQLQQLRMRLS-----ELEQRLR---QQQRAERLLAEFCKRLGKNLDDEDELEQ-LQEELE 564
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2494 QLSARVKQQEARQDEKRMDRRSSREDLDKR---------KWQRVKEKLRELELQ-------RQRDEHKIEQLQRLVRELR 2557
Cdd:PRK04863 565 ARLESLSESVSEARERRMALRQQLEQLQARiqrlaarapAWLAAQDALARLREQsgeefedSQDVTEYMQQLLERERELT 644
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1050-1434 |
1.06e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.71 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1050 LLDMALDS-SKQLEDARQLHRCVEKEFrhrdEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQ 1128
Cdd:pfam05483 381 IITMELQKkSSELEEMTKFKNNKEVEL----EELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLE 456
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1129 EALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKE------REAGTPVSAGREDAALQKEV 1202
Cdd:pfam05483 457 IQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDmtlelkKHQEDIINCKKQEERMLKQI 536
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1203 ESLTRDQWESRKQSEKDRATLLSQMRVLESEL----EDQLVQHRGCAQLAEEVTTLKQQLATLDKHLRSQRQFMDEqaae 1278
Cdd:pfam05483 537 ENLEEKEMNLRDELESVREEFIQKGDEVKCKLdkseENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEE---- 612
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1279 rehereeFQQEIKWLEGqlRQATRPRPPGPRDSQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLL--------I 1350
Cdd:pfam05483 613 -------LHQENKALKK--KGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLeevekakaI 683
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1351 QEEEIKHLEETNENIQRQMAQLQEELEKQRRSTE--------ELEVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIE 1422
Cdd:pfam05483 684 ADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDkiieerdsELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLE 763
|
410
....*....|..
gi 1958758587 1423 QLHEVIEKLQSE 1434
Cdd:pfam05483 764 IEKEEKEKLKME 775
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1056-1561 |
1.06e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.67 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1056 DSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKE 1135
Cdd:TIGR02169 361 ELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELE 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1136 ESEQQLIVELEDLRKQLQQASRELLTLKEEnsvLWNQKETFTNEAKEREagtpvSAGREDAALQKEVESLTRDQWESRKQ 1215
Cdd:TIGR02169 441 EEKEDKALEIKKQEWKLEQLAADLSKYEQE---LYDLKEEYDRVEKELS-----KLQRELAEAEAQARASEERVRGGRAV 512
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1216 SEKDRAT------LLSQMRVLESE-----------------LEDQLVQHRgCAQLAEEVTTLKQQLATLDKHLRSQR--- 1269
Cdd:TIGR02169 513 EEVLKASiqgvhgTVAQLGSVGERyataievaagnrlnnvvVEDDAVAKE-AIELLKRRKAGRATFLPLNKMRDERRdls 591
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1270 ------------QFMDEQAAEREHEREEFQQEI--------KWLEGQLRQATRP--------------RPPGPRDSQCAK 1315
Cdd:TIGR02169 592 ilsedgvigfavDLVEFDPKYEPAFKYVFGDTLvvedieaaRRLMGKYRMVTLEgelfeksgamtggsRAPRGGILFSRS 671
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1316 LDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEV-VNSRNS 1394
Cdd:TIGR02169 672 EPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEdLSSLEQ 751
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1395 EIEELKAIIEHLQENQEQLQKAKAEEIEQL--------HEVIEKLQSELSLMGPTVHEMS------DLPPGSLHTELSCL 1460
Cdd:TIGR02169 752 EIENVKSELKELEARIEELEEDLHKLEEALndlearlsHSRIPEIQAELSKLEEEVSRIEarlreiEQKLNRLTLEKEYL 831
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1461 QAEGMGGQALHNELQAAQAAKGAfgQLLADHGHSQALEALQERLQDAEAAAARHLTELEHCVALRQAEVEAMASRIQEFE 1540
Cdd:TIGR02169 832 EKEIQELQEQRIDLKEQIKSIEK--EIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELE 909
|
570 580
....*....|....*....|.
gi 1958758587 1541 ATLKAKEAIIVQRDLEIDAVN 1561
Cdd:TIGR02169 910 AQIEKKRKRLSELKAKLEALE 930
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2061-2433 |
1.10e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2061 EVFAREQENAELQPRPYSSDLGDYNSLVKKLEKVIQEQGDLQKVREHAcLPDRSSLLAEIQALRAQLRMTHLQNQekLQQ 2140
Cdd:COG4717 67 ELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEEL-REELEKLEKLLQLLPLYQELEALEAE--LAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2141 LCAALTSTEARGSQREHQLRRQVELLAYKVEQEKCIANDLQKTLSKEQEAASDVRKRLMVEQGAVQDLKSELHACKQENT 2220
Cdd:COG4717 144 LPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELE 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2221 NLLESLDKVQQEVLRLRYGHVTWSYSGTSSASAGRAVLDGKENELK------------------VVLEELECERGKGQVL 2282
Cdd:COG4717 224 ELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLsliltiagvlflvlgllaLLFLLLAREKASLGKE 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2283 QAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNNQL---CVALKHERAAKDNLQKELQIEAS--RCEALLAQEK-GQ 2356
Cdd:COG4717 304 AEELQALPALEELEEEELEELLAALGLPPDLSPEELLELldrIEELQELLREAEELEEELQLEELeqEIAALLAEAGvED 383
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958758587 2357 LSELRKSLEAERsrslELSEALQHERLLTEQLSRNAQEACARQDTQAQHALLRKLKAEKARALELEAMLEKVQKQAA 2433
Cdd:COG4717 384 EEELRAALEQAE----EYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELA 456
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1071-1435 |
1.22e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.63 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1071 VEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGK---KEESEQQLIVELED 1147
Cdd:TIGR04523 129 LEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKiknKLLKLELLLSNLKK 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1148 LRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAgtpvsagrEDAALQKEVESLTRDQWESRKQSEkDRATLLSQM 1227
Cdd:TIGR04523 209 KIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTT--------EISNTQTQLNQLKDEQNKIKKQLS-EKQKELEQN 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1228 RVLESELEDQLvqhrgcAQLAEEVTTLKQQ-LATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRPRPP 1306
Cdd:TIGR04523 280 NKKIKELEKQL------NQLKSEISDLNNQkEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTN 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1307 -----GPRDSQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEE-------EIKHLEETNENIQRQMAQLQE 1374
Cdd:TIGR04523 354 sesenSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKlnqqkdeQIKKLQQEKELLEKEIERLKE 433
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958758587 1375 ELEKQRRSTEELE-VVNSRNSEIEELKAIIEHLQENQEQLQKakaeEIEQLHEVIEKLQSEL 1435
Cdd:TIGR04523 434 TIIKNNSEIKDLTnQDSVKELIIKNLDNTRESLETQLKVLSR----SINKIKQNLEQKQKEL 491
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1320-1543 |
1.26e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.65 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1320 VELLQEKLREKLDGFNELVIKKDLAD---------QQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVn 1390
Cdd:PRK02224 178 VERVLSDQRGSLDQLKAQIEEKEEKDlherlngleSELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETL- 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1391 srNSEIEELKAIIEHLQENQEQLqkakAEEIEQLHEVIEKLQSELSLMGPTVhEMSDLPPGSLHTELSCLQAEgmgGQAL 1470
Cdd:PRK02224 257 --EAEIEDLRETIAETEREREEL----AEEVRDLRERLEELEEERDDLLAEA-GLDDADAEAVEARREELEDR---DEEL 326
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958758587 1471 HNELQAAQAAKGAFGQLLadHGHSQALEALQERLQDAEAAAARHLTELEHC---VALRQAEVEAMASRIQEFEATL 1543
Cdd:PRK02224 327 RDRLEECRVAAQAHNEEA--ESLREDADDLEERAEELREEAAELESELEEAreaVEDRREEIEELEEEIEELRERF 400
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2264-2556 |
1.36e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2264 ELKVVLEELECERGKGQVLQAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNNQLCVALKHERAAKDNLQKELQiea 2343
Cdd:TIGR02168 716 QLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE--- 792
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2344 sRCEALLAQEKGQLSELRKSLEAERSRSLELSEALQHerlLTEQLSRNAQEAcarQDTQAQHALLRKLKAEKARALE-LE 2422
Cdd:TIGR02168 793 -QLKEELKALREALDELRAELTLLNEEAANLRERLES---LERRIAATERRL---EDLEEQIEELSEDIESLAAEIEeLE 865
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2423 AMLEKVQKQAAHTQQQLEAQAQERcLELRREKEvsgNLRSAVDALQTHKQELGCCLEREREKAAWLQAELEQLSARVKQQ 2502
Cdd:TIGR02168 866 ELIEELESELEALLNERASLEEAL-ALLRSELE---ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNL 941
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1958758587 2503 EARQDEKRMDrrssredldkrKWQRVKEKLRELELQRQRDEHKIEQLQRLVREL 2556
Cdd:TIGR02168 942 QERLSEEYSL-----------TLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1112-1434 |
1.52e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1112 TAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRelltLKEensVLWNQKETftneakereagtpVSA 1191
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQR----LAE---YSWDEIDV-------------ASA 666
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1192 GREDAALQKEVESLTRDQWESRKQsEKDRATLLSQMRVLESELEDQLVQHRGC----AQLAEEVTTLKQQLATLDKHLRS 1267
Cdd:COG4913 667 EREIAELEAELERLDASSDDLAAL-EEQLEELEAELEELEEELDELKGEIGRLekelEQAEEELDELQDRLEAAEDLARL 745
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1268 QRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRprppgprdsqcakldeEVELLQEKLREKLDGFNE----------- 1336
Cdd:COG4913 746 ELRALLEERFAAALGDAVERELRENLEERIDALRA----------------RLNRAEEELERAMRAFNRewpaetadlda 809
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1337 --------LVIKKDLADQQLLIQEEEIKHLEetNENIQRQMAQLQEELEKQRRSTEE---------------------LE 1387
Cdd:COG4913 810 dleslpeyLALLDRLEEDGLPEYEERFKELL--NENSIEFVADLLSKLRRAIREIKEridplndslkripfgpgrylrLE 887
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 1958758587 1388 VVNSRNSEI----EELKAIIEHLQENQEQLQKAKAEEIEQLhevIEKLQSE 1434
Cdd:COG4913 888 ARPRPDPEVrefrQELRAVTSGASLFDEELSEARFAALKRL---IERLRSE 935
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1314-1434 |
1.63e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1314 AKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQ---------LQEELEKQRRSTE 1384
Cdd:COG1579 27 KELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNvrnnkeyeaLQKEIESLKRRIS 106
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958758587 1385 ELE--------VVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSE 1434
Cdd:COG1579 107 DLEdeilelmeRIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAE 164
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
286-586 |
1.69e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.96 E-value: 1.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 286 QHQAAIRKLQEdlrSEHCQYLQDLELRFREKEKAKELELETLQASYEDLKAQSQEEIRHLWSQLESMKTNREEQNGSwep 365
Cdd:pfam17380 279 QHQKAVSERQQ---QEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELER--- 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 366 lLAQASHLEELQHLRS-----DFAQQQQQERAQHESELEHLRVYFE----KKLNDAEKTYQEDLTVFQQRLQEAREESLE 436
Cdd:pfam17380 353 -IRQEERKRELERIRQeeiamEISRMRELERLQMERQQKNERVRQEleaaRKVKILEEERQRKIQQQKVEMEQIRAEQEE 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 437 SAEISSSCMFPEETSGRERkeppdpldLQLEQPKAQGSLIEDYQEKLSNAEEKIELMKQEFQKKEAEwELSREDLKRDAE 516
Cdd:pfam17380 432 ARQREVRRLEEERAREMER--------VRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAE-EQRRKILEKELE 502
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 517 EKLASMFLELREKAESEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQgHLRQLEQELTRDEVL 586
Cdd:pfam17380 503 ERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQE-QMRKATEERSRLEAM 571
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
194-521 |
1.71e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 194 LRNEQETAELKEKFRSEMEKTvQMMETLKQDWESERELclETLRKELSAKhqsemeglqnqfQKELSEQKAELEKIFQAK 273
Cdd:TIGR02169 203 LRREREKAERYQALLKEKREY-EGYELLKEKEALERQK--EAIERQLASL------------EEELEKLTEEISELEKRL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 274 HEAEVSLKNLEAQHQA----AIRKLQEDLRSEHCQYLQdlelrFREKEKAKELELETLQASyedlKAQSQEEIRHLWSQL 349
Cdd:TIGR02169 268 EEIEQLLEELNKKIKDlgeeEQLRVKEKIGELEAEIAS-----LERSIAEKERELEDAEER----LAKLEAEIDKLLAEI 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 350 ESMKTNREEQNGSWEPLLAQASHL-EELQHLRSDFAQQQQQERAQHEsELEHLRVYFEkKLNDAEKTYQEDLTVFQQRLQ 428
Cdd:TIGR02169 339 EELEREIEEERKRRDKLTEEYAELkEELEDLRAELEEVDKEFAETRD-ELKDYREKLE-KLKREINELKRELDRLQEELQ 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 429 EAREEsLESAEISSSCMFPEETSGRERKEppdplDLQLEQPKAQGSLiEDYQEKLSNAEEKIELMKQEFQKKEAEwelsR 508
Cdd:TIGR02169 417 RLSEE-LADLNAAIAGIEAKINELEEEKE-----DKALEIKKQEWKL-EQLAADLSKYEQELYDLKEEYDRVEKE----L 485
|
330
....*....|...
gi 1958758587 509 EDLKRDAEEKLAS 521
Cdd:TIGR02169 486 SKLQRELAEAEAQ 498
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2333-2557 |
1.72e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.28 E-value: 1.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2333 DNLQKELQIEASRCEAL---LAQEKGQLSELRKSLEAERSRSLELSEALQHERLLTEQLsRNAQEACARQDTQAQHALLR 2409
Cdd:TIGR02168 680 EELEEKIEELEEKIAELekaLAELRKELEELEEELEQLRKELEELSRQISALRKDLARL-EAEVEQLEERIAQLSKELTE 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2410 kLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKEVSGNLRSAVDALQTHKQELGCCLEREREKAAWLQ 2489
Cdd:TIGR02168 759 -LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATE 837
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2490 AELEQLSARVKQQEARQDEKRMDRRSSREDLDK--RKWQRVKEKLRELELQRQRDEHKIEQLQRLVRELR 2557
Cdd:TIGR02168 838 RRLEDLEEQIEELSEDIESLAAEIEELEELIEEleSELEALLNERASLEEALALLRSELEELSEELRELE 907
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2406-2562 |
1.75e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2406 ALLRKLKAEKARALELEAMLEKVQKQAAHtqQQLEAQAQERCLELRREKEVSGNLRSAVDALQ-THKQELgccLEREREK 2484
Cdd:COG4913 225 EAADALVEHFDDLERAHEALEDAREQIEL--LEPIRELAERYAAARERLAELEYLRAALRLWFaQRRLEL---LEAELEE 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2485 aawLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRV---KEKLRELELQRQRDEHKIEQLQRLVRELRWKEE 2561
Cdd:COG4913 300 ---LRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLeqlEREIERLERELEERERRRARLEALLAALGLPLP 376
|
.
gi 1958758587 2562 A 2562
Cdd:COG4913 377 A 377
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
1314-1434 |
1.81e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 43.08 E-value: 1.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1314 AKLDEEVELLQE---KLREKLDGFN-ELVIKKDLA------DQQLL-IQEEEIKHLEETNENIQRQMAQLQEELEkqrrs 1382
Cdd:smart00787 161 KLLMKELELLNSikpKLRDRKDALEeELRQLKQLEdeledcDPTELdRAKEKLKKLLQEIMIKVKKLEELEEELQ----- 235
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1958758587 1383 teELE-VVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSE 1434
Cdd:smart00787 236 --ELEsKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1065-1513 |
2.40e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 2.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1065 RQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLA---LELHTAEGLLEGFKVEKADLQEALGKKEESEQ-- 1139
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAelqEELEELEEELEELEAELEELREELEKLEKLLQll 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1140 QLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREagtpvsagREDAALQKEVESLTRDQWESRKQSEKD 1219
Cdd:COG4717 129 PLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELA--------ELQEELEELLEQLSLATEEELQDLAEE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1220 RATLLSQMRVLESELEdqlvqhrgcaQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQ 1299
Cdd:COG4717 201 LEELQQRLAELEEELE----------EAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLS 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1300 ATRPRPPGPRDSQCAKLDEEVELLQEK--LREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELE 1377
Cdd:COG4717 271 LILTIAGVLFLVLGLLALLFLLLAREKasLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQ 350
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1378 KQRRSTEELEVVNSRNSEIEELKAIIEHLQ-ENQEQLQKA--KAEEIEQLHEVIEKLQSELSLMGPTVHE-MSDLPPGSL 1453
Cdd:COG4717 351 ELLREAEELEEELQLEELEQEIAALLAEAGvEDEEELRAAleQAEEYQELKEELEELEEQLEELLGELEElLEALDEEEL 430
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1454 HTELSCLQAEgmgGQALHNELQAAQAAKGAFGQLLADHGHSQALEALQERLQDAEAAAAR 1513
Cdd:COG4717 431 EEELEELEEE---LEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRE 487
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1087-1436 |
2.45e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.47 E-value: 2.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1087 QKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEEN 1166
Cdd:TIGR04523 225 KQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQK 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1167 SVLWNQ--KETFTNEAKE-REAGTPVSAGRED-AALQKEVESLTRDqwesRKQSEKDRATLLSQMRVLESELEDQLVQHr 1242
Cdd:TIGR04523 305 EQDWNKelKSELKNQEKKlEEIQNQISQNNKIiSQLNEQISQLKKE----LTNSESENSEKQRELEEKQNEIEKLKKEN- 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1243 gcAQLAEEVTTLKQQLATLDKHLRSQR---QFMDEQAAEREHEREEFQQEIKWLEgqlrqatrprppgprdSQCAKLDEE 1319
Cdd:TIGR04523 380 --QSYKQEIKNLESQINDLESKIQNQEklnQQKDEQIKKLQQEKELLEKEIERLK----------------ETIIKNNSE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1320 VELLQEKLREKLDGFNELVIKKDladqqllIQEEEIKHLEETNENIQRQMAQLQEELEKQrrsTEELEVVNSRNSEIEEL 1399
Cdd:TIGR04523 442 IKDLTNQDSVKELIIKNLDNTRE-------SLETQLKVLSRSINKIKQNLEQKQKELKSK---EKELKKLNEEKKELEEK 511
|
330 340 350
....*....|....*....|....*....|....*..
gi 1958758587 1400 kaiIEHLQENQEQLQkakaEEIEQLHEVIEKLQSELS 1436
Cdd:TIGR04523 512 ---VKDLTKKISSLK----EKIEKLESEKKEKESKIS 541
|
|
| GBP_C |
cd16269 |
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ... |
198-345 |
2.48e-03 |
|
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines.
Pssm-ID: 293879 [Multi-domain] Cd Length: 291 Bit Score: 42.56 E-value: 2.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 198 QETAELKEKFRSEMEKTVQMMETLKQDWESeRELCLETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKifQAKHEAE 277
Cdd:cd16269 149 EDREKLVEKYRQVPRKGVKAEEVLQEFLQS-KEAEAEAILQADQALTEKEKEIEAERAKAEAAEQERKLLE--EQQRELE 225
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 278 VSLKNLEAQHQAAIRKLQEDLRSEHCQYLQDLE--LRFREKEKAKELELETLQASyedlkAQSQEEIRHL 345
Cdd:cd16269 226 QKLEDQERSYEEHLRQLKEKMEEERENLLKEQEraLESKLKEQEALLEEGFKEQA-----ELLQEEIRSL 290
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
179-279 |
2.61e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 43.53 E-value: 2.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 179 ELMREQHAREKEEMALRNEQETA--ELKEKFRSEMEKTVQMMETLKQDWESERELCLE--TLRKELSAKHqsemeGLQNQ 254
Cdd:COG0542 415 ELERRLEQLEIEKEALKKEQDEAsfERLAELRDELAELEEELEALKARWEAEKELIEEiqELKEELEQRY-----GKIPE 489
|
90 100
....*....|....*....|....*
gi 1958758587 255 FQKELSEQKAELEKIFQAKHEaEVS 279
Cdd:COG0542 490 LEKELAELEEELAELAPLLRE-EVT 513
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1202-1435 |
2.80e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 2.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1202 VESLTRDQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLATldkhlrsqrqfmdeqaaereh 1281
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEE--------------------- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1282 ereeFQQEIKWLEGQLRQATRPRPPGPRDSQCAKLDEEVELLQEKLrekldgfnelvikkdladQQLLIQEEEIKHLEET 1361
Cdd:COG4717 107 ----LEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERL------------------EELEERLEELRELEEE 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958758587 1362 NENIQRQMAQLQEELEKQRR--STEELEVVNSRNSEIEELKAIIEHLQENQEQLQkakaEEIEQLHEVIEKLQSEL 1435
Cdd:COG4717 165 LEELEAELAELQEELEELLEqlSLATEEELQDLAEELEELQQRLAELEEELEEAQ----EELEELEEELEQLENEL 236
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1121-1386 |
2.87e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.36 E-value: 2.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1121 KVEKADLQEAL---GKKEESEQqlivELEDLRKQLQQASRELLTLKEEnsvLWNQKETFTNEAKEREAGTPVsagredAA 1197
Cdd:PRK11281 59 KLVQQDLEQTLallDKIDRQKE----ETEQLKQQLAQAPAKLRQAQAE---LEALKDDNDEETRETLSTLSL------RQ 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1198 LQKEVESLTRDQwesrKQSEKDRATLLSQMRVLESELEdqlvqhRGCAQLAEEVTTLkQQLATLDKHLRsqrqfmDEQAA 1277
Cdd:PRK11281 126 LESRLAQTLDQL----QNAQNDLAEYNSQLVSLQTQPE------RAQAALYANSQRL-QQIRNLLKGGK------VGGKA 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1278 EREHEREEFQQEIKWLEGQLRQATrprppgprdsqcaKLDEEVELLQEKLREKLDgfnELVIKKDLADQQLLIQEEEI-- 1355
Cdd:PRK11281 189 LRPSQRVLLQAEQALLNAQNDLQR-------------KSLEGNTQLQDLLQKQRD---YLTARIQRLEHQLQLLQEAIns 252
|
250 260 270
....*....|....*....|....*....|.
gi 1958758587 1356 KHLEETneniQRQMAQLQEELEKQRRSTEEL 1386
Cdd:PRK11281 253 KRLTLS----EKTVQEAQSQDEAARIQANPL 279
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
181-580 |
2.98e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.41 E-value: 2.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 181 MR-EQHAREKEEMALRNEQETAELKEKFRSEMEKTVQMME----------TLKQDWESERE---LCLETLR-KELSAKHQ 245
Cdd:PRK04863 275 MRhANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARelaelneaesDLEQDYQAASDhlnLVQTALRqQEKIERYQ 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 246 SEMEGL------QNQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAIrKLQEDLRSEHCQYLQDLElRFREKEKA 319
Cdd:PRK04863 355 ADLEELeerleeQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQAL-DVQQTRAIQYQQAVQALE-RAKQLCGL 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 320 KELELETLQASYEDLKAQSQE---EIRHLWSQLESMKTNREEQNGSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHES 396
Cdd:PRK04863 433 PDLTADNAEDWLEEFQAKEQEateELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLA 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 397 E-LEHLRvyfeKKLNDAEKTYQEdltvfQQRLQEAREESlesaeissscmfpeetSGRERKEPPDPLDLQLEQpKAQGSL 475
Cdd:PRK04863 513 EqLQQLR----MRLSELEQRLRQ-----QQRAERLLAEF----------------CKRLGKNLDDEDELEQLQ-EELEAR 566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 476 IEDYQEKLSNAEEKIELMKQEfqkkeaewelsREDLKRDAEE--KLASMFLELREKAEseklsiinrfELRESSMRHLQD 553
Cdd:PRK04863 567 LESLSESVSEARERRMALRQQ-----------LEQLQARIQRlaARAPAWLAAQDALA----------RLREQSGEEFED 625
|
410 420 430
....*....|....*....|....*....|..
gi 1958758587 554 QQA-----AQISDLERSLREQQGHLRQLEQEL 580
Cdd:PRK04863 626 SQDvteymQQLLERERELTVERDELAARKQAL 657
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1027-1420 |
3.17e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 3.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1027 ENTQECEQPIRKVYQSLSTAVEglLDMALDSSKQLEDARQLHRCVEK--EFRHRDEEMAQAVQKQQELLERLREESAAKD 1104
Cdd:PTZ00121 1388 EEKKKADEAKKKAEEDKKKADE--LKKAAAAKKKADEAKKKAEEKKKadEAKKKAEEAKKADEAKKKAEEAKKAEEAKKK 1465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1105 rlALELHTAEGLLEgfKVEKADLQEALGKKEESEQQlivELEDLRKQlQQASRELLTLKEENSVLWNQKETFTNEAKERE 1184
Cdd:PTZ00121 1466 --AEEAKKADEAKK--KAEEAKKADEAKKKAEEAKK---KADEAKKA-AEAKKKADEAKKAEEAKKADEAKKAEEAKKAD 1537
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1185 AGTPVSAGREDAALQKEVEslTRDQWESRKQSEKDRATLLSQMRVLESELEDQLVQHR--GCAQLAEEVTTLKQQLATLD 1262
Cdd:PTZ00121 1538 EAKKAEEKKKADELKKAEE--LKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARieEVMKLYEEEKKMKAEEAKKA 1615
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1263 KHLRSQRQFM---DEQAAEREHEREEFQQEIKWLEgQLRQA-----TRPRPPGPRDSQCAKLDEEVELLQEKLREKLDGF 1334
Cdd:PTZ00121 1616 EEAKIKAEELkkaEEEKKKVEQLKKKEAEEKKKAE-ELKKAeeenkIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL 1694
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1335 NELVIKKDLADQQLLIQEEEIKHLEE---TNENIQRQMAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQE 1411
Cdd:PTZ00121 1695 KKEAEEAKKAEELKKKEAEEKKKAEElkkAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIR 1774
|
....*....
gi 1958758587 1412 QLQKAKAEE 1420
Cdd:PTZ00121 1775 KEKEAVIEE 1783
|
|
| BspD6I-like |
cd22316 |
nicking endonuclease Nt.BspD6I and similar endonucleases; Heterodimeric type II restriction ... |
1314-1434 |
3.35e-03 |
|
nicking endonuclease Nt.BspD6I and similar endonucleases; Heterodimeric type II restriction endonuclease nicking endonuclease BspD6I recognizes a pseudosymmetric DNA sequence (5'-GAGTC) and cuts both strands outside the recognition motif 4 nucleotides downstream. It forms the large subunit in a heterodimeric arrangement. This catalytic domain/subunit belongs to a superfamily of PDDEXK nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI.
Pssm-ID: 411720 Cd Length: 345 Bit Score: 42.67 E-value: 3.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1314 AKLDEEVELLQEKLREKLDGFNELVIKKDLADqqlliqeeeIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNS-- 1391
Cdd:cd22316 38 EKKVEVEEILSNVERKPIFFDSDDDYLEYLFN---------PALPPLDNDDKANLVLELLRIRLKERGILIKISSKPLlt 108
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1958758587 1392 ---RNSEIEELKAIIEHLQENQeqLQKAKAEEIEQLHEVIEKLQSE 1434
Cdd:cd22316 109 padLNIIRKELENKLKKLREKK--YAKRQAEDWEEILEYFDLIENR 152
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
1110-1433 |
3.39e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 42.92 E-value: 3.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1110 LHTAEGLLEGFKVEKA-------------------DLQEALGKKEESEQQLIVELEDLRKQLQQASRELL--------TL 1162
Cdd:pfam06160 69 LFEAEELNDKYRFKKAkkaldeieellddieedikQILEELDELLESEEKNREEVEELKDKYRELRKTLLanrfsygpAI 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1163 KEENSVLWNQKETFTNEAKEREAGTPVSAGREDAALQKEVESLtrdqwesrkqsEKDRATLLSQMRVLESELEDQLVQHR 1242
Cdd:pfam06160 149 DELEKQLAEIEEEFSQFEELTESGDYLEAREVLEKLEEETDAL-----------EELMEDIPPLYEELKTELPDQLEELK 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1243 -GCAQLAEEvttlKQQLATLDkhlrsqrqfmdeqaaerehereeFQQEIKWLEGQLRQATrprppgprdSQCAKLD-EEV 1320
Cdd:pfam06160 218 eGYREMEEE----GYALEHLN-----------------------VDKEIQQLEEQLEENL---------ALLENLElDEA 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1321 ELLQEKLREKLDGFNEL----VIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQ-------EELEKQRRSTEELEVV 1389
Cdd:pfam06160 262 EEALEEIEERIDQLYDLlekeVDAKKYVEKNLPEIEDYLEHAEEQNKELKEELERVQqsytlneNELERVRGLEKQLEEL 341
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 1958758587 1390 NSRNSEIEELKA--------IIEHLQENQEQLQKAKAEEIeqlhEVIEKLQS 1433
Cdd:pfam06160 342 EKRYDEIVERLEekevayseLQEELEEILEQLEEIEEEQE----EFKESLQS 389
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1056-1405 |
3.66e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 3.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1056 DSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKE 1135
Cdd:PTZ00121 1549 DELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA 1628
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1136 ESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAgtpvSAGREDAALQKEVESLTRDQWESRKq 1215
Cdd:PTZ00121 1629 EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE----EAKKAEEDEKKAAEALKKEAEEAKK- 1703
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1216 sekdratlLSQMRVLESELEDQLVQHRGcaqlAEEVTTLKQqlatldkhlrsqrqfmdEQAAEREHEREEFQQEIKWLEG 1295
Cdd:PTZ00121 1704 --------AEELKKKEAEEKKKAEELKK----AEEENKIKA-----------------EEAKKEAEEDKKKAEEAKKDEE 1754
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1296 QLRQATRPRPpgprdsqcakldEEVELLQEKLREKLDGFNELVIKKDlaDQQLLIQEEEIKHLEETNENIQR--QMAQLQ 1373
Cdd:PTZ00121 1755 EKKKIAHLKK------------EEEKKAEEIRKEKEAVIEEELDEED--EKRRMEVDKKIKDIFDNFANIIEggKEGNLV 1820
|
330 340 350
....*....|....*....|....*....|..
gi 1958758587 1374 EELEKQRRSTEELEVVNSRNSEIEELKAIIEH 1405
Cdd:PTZ00121 1821 INDSKEMEDSAIKEVADSKNMQLEEADAFEKH 1852
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
2304-2508 |
4.36e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 4.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2304 LEELKISLEK------QLAQNNQLcVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELRKSLEAERSRSLELSEA 2377
Cdd:COG3206 184 LPELRKELEEaeaaleEFRQKNGL-VDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQS 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2378 LQHERLLTEQLSRNAQEACARQDTQAQHALLRKLKAEKAralELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKEvs 2457
Cdd:COG3206 263 PVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIA---ALRAQLQQEAQRILASLEAELEALQAREASLQAQLA-- 337
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1958758587 2458 gNLRSAVDALQTHKQELgccLEREREKAAwLQAELEQLSARvkQQEARQDE 2508
Cdd:COG3206 338 -QLEARLAELPELEAEL---RRLEREVEV-ARELYESLLQR--LEEARLAE 381
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1317-1434 |
4.53e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 4.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1317 DEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEetneniqRQMAQLQEELEKqrrsteELEVVNSRNSEI 1396
Cdd:PRK12704 46 EAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLE-------KRLLQKEENLDR------KLELLEKREEEL 112
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1958758587 1397 EELKAIIEHLQEN----QEQLQKAKAEEIEQLhEVIEKLQSE 1434
Cdd:PRK12704 113 EKKEKELEQKQQElekkEEELEELIEEQLQEL-ERISGLTAE 153
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
232-499 |
5.51e-03 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 42.47 E-value: 5.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 232 CLETLRKELSA-KHQSEMEGLQNQFQKELSEQ---KAELEKIFQAKHEAEV-----SLKNLEAQHQAAIRKLQEDLRSEH 302
Cdd:PTZ00341 294 CRKIMNSDISSfKHINELKSLEHRAAKAAEAEmkkRAEKPKKKKSKRRGWLccgggDIETVEPQQEEPVQDVGEHQINEY 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 303 CQYLQDLELRFREK--------EKAKELELETLQASYED----LKAQSQEEIRHL-WSQLESMKTNREEQNG-SWEPLLA 368
Cdd:PTZ00341 374 GDILPSLKASINNSainyydavKDGKYLDDDSSDALYTDedllFDLEKQKYMDMLdGSEDESVEDNEEEHSGdANEEELS 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 369 QASHLEElQHLRSDFAQQQQQERAQHESELEhlrVYFEKKLNDaektYQEDLTVFQQRLQEAREESLESAEIssscmfpe 448
Cdd:PTZ00341 454 VDEHVEE-HNADDSGEQQSDDESGEHQSVNE---IVEEQSVNE----HVEEPTVADIVEQETVDEHVEEPAV-------- 517
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1958758587 449 etsgrERKEPPDPLDLQLEQPKAQGSLIedyQEKLSNAEEKIELMKQEFQK 499
Cdd:PTZ00341 518 -----DENEEQQTADEHVEEPTIAEEHV---EEEISTAEEHIEEPASDVQQ 560
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1314-1550 |
6.79e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 6.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1314 AKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEV-VNSR 1392
Cdd:TIGR02169 191 LIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKrLEEI 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1393 NSEIEELKAIIEHLQEN-----QEQL-------------QKAKAEEIEQLHEVIEKLQSELSLMGPTVHEMSD------L 1448
Cdd:TIGR02169 271 EQLLEELNKKIKDLGEEeqlrvKEKIgeleaeiaslersIAEKERELEDAEERLAKLEAEIDKLLAEIEELEReieeerK 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1449 PPGSLHTELSCLQAEGMggqALHNELQAAQAAKGAFGQLLADhgHSQALEALQERLQDAEAAAARHLTELEHC---VALR 1525
Cdd:TIGR02169 351 RRDKLTEEYAELKEELE---DLRAELEEVDKEFAETRDELKD--YREKLEKLKREINELKRELDRLQEELQRLseeLADL 425
|
250 260
....*....|....*....|....*
gi 1958758587 1526 QAEVEAMASRIQEFEATLKAKEAII 1550
Cdd:TIGR02169 426 NAAIAGIEAKINELEEEKEDKALEI 450
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1311-1436 |
7.37e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.93 E-value: 7.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 1311 SQCAKLDEEVELLQEKLREKLDGFNELVikkdladQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELE-VV 1389
Cdd:TIGR04523 218 SQISELKKQNNQLKDNIEKKQQEINEKT-------TEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEkQL 290
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1958758587 1390 NSRNSEIEELKaiiehlQENQEQLQKAKAEEIEQLHEVIEKLQSELS 1436
Cdd:TIGR04523 291 NQLKSEISDLN------NQKEQDWNKELKSELKNQEKKLEEIQNQIS 331
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2053-2534 |
9.29e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.85 E-value: 9.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2053 EELLQAIQEVFAREQENAELQprpysSDLGDYNSLVKKLEKVIQEQGDLQKVREHACLPDRSSLLAEIQALRAQLRmthl 2132
Cdd:COG1196 323 EELAELEEELEELEEELEELE-----EELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR---- 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2133 qNQEKLQQLCAALTSTEARGSQREHQLRRQVELLAYKVEQEKCIANDLQKTLSKEQEAASDVRKRLMVEQGAVQDLKSEL 2212
Cdd:COG1196 394 -AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2213 HACKQENTNLLESLDKVQQEVLRLRygHVTWSYSGTSSASAGRAVLDGKENELKVVLEELECERGKGQVLQAQQEEQQLR 2292
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLL--EAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQN 550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2293 HLQREGQSSRALEELkislekqlaqnnqlcvaLKHERAAKDNLQKELQIEASRcEALLAQEKGQLSELRKSLEAERSRSL 2372
Cdd:COG1196 551 IVVEDDEVAAAAIEY-----------------LKAAKAGRATFLPLDKIRARA-ALAAALARGAIGAAVDLVASDLREAD 612
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2373 ELSEALQHERLLTEQLSRNAQEACARQDTQAQHALLRKLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRR 2452
Cdd:COG1196 613 ARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEE 692
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758587 2453 EKEVSGNLRSAVDALQTHKQELGCCLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRVKEKL 2532
Cdd:COG1196 693 LELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERL 772
|
..
gi 1958758587 2533 RE 2534
Cdd:COG1196 773 ER 774
|
|
| |
