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Conserved domains on  [gi|1958807026|ref|XP_038955540|]
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muscleblind-like protein 3 isoform X6 [Rattus norvegicus]

Protein Classification

zinc finger CCCH domain-containing protein( domain architecture ID 10646956)

zinc finger CCCH domain-containing protein similar to Caenorhabditis briggsae muscleblind-like protein that binds to RNA with repeat sequences CUG and CCUG

Gene Ontology:  GO:0046872|GO:0003676
PubMed:  12665246|27990022
SCOP:  3001741

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ZnF_C3H1 smart00356
zinc finger;
176-200 4.23e-04

zinc finger;


:

Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 37.22  E-value: 4.23e-04
                           10        20
                   ....*....|....*....|....*
gi 1958807026  176 RLEVCREFQRGNCTRGESeCRYAHP 200
Cdd:smart00356   3 KTELCKFFKRGYCPRGDR-CKFAHP 26
ZnF_C3H1 smart00356
zinc finger;
18-41 2.12e-03

zinc finger;


:

Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 35.30  E-value: 2.12e-03
                           10        20
                   ....*....|....*....|....
gi 1958807026   18 EVCREFQRGTCSRADtECRFAHPP 41
Cdd:smart00356   5 ELCKFFKRGYCPRGD-RCKFAHPL 27
 
Name Accession Description Interval E-value
ZnF_C3H1 smart00356
zinc finger;
176-200 4.23e-04

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 37.22  E-value: 4.23e-04
                           10        20
                   ....*....|....*....|....*
gi 1958807026  176 RLEVCREFQRGNCTRGESeCRYAHP 200
Cdd:smart00356   3 KTELCKFFKRGYCPRGDR-CKFAHP 26
ZnF_C3H1 smart00356
zinc finger;
18-41 2.12e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 35.30  E-value: 2.12e-03
                           10        20
                   ....*....|....*....|....
gi 1958807026   18 EVCREFQRGTCSRADtECRFAHPP 41
Cdd:smart00356   5 ELCKFFKRGYCPRGD-RCKFAHPL 27
 
Name Accession Description Interval E-value
ZnF_C3H1 smart00356
zinc finger;
176-200 4.23e-04

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 37.22  E-value: 4.23e-04
                           10        20
                   ....*....|....*....|....*
gi 1958807026  176 RLEVCREFQRGNCTRGESeCRYAHP 200
Cdd:smart00356   3 KTELCKFFKRGYCPRGDR-CKFAHP 26
ZnF_C3H1 smart00356
zinc finger;
18-41 2.12e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 35.30  E-value: 2.12e-03
                           10        20
                   ....*....|....*....|....
gi 1958807026   18 EVCREFQRGTCSRADtECRFAHPP 41
Cdd:smart00356   5 ELCKFFKRGYCPRGD-RCKFAHPL 27
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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