|
Name |
Accession |
Description |
Interval |
E-value |
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
43-698 |
0e+00 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 584.80 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 43 AGKIAGAGLLFVGGGIGGTILYAKWDSHFRESVEKTIPYSDKLFGMVLGSAPYTVPlpkKPIQSGPLKISSVSEVMTDS- 121
Cdd:pfam09731 4 FGKFFVALVLIVGVGYGGVVLYAYKDDNFRDFFEEYIPYGEEVVLYALGEDPPLAP---KPKTFRPLQPSVVSAVTGESk 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 122 ---ELPMAQTQETNGDTPASAAGDPAPEVEHEDTINTECPNTDEGTStfvtAALAKSLEDALNQTATVTRQTITAQNAAV 198
Cdd:pfam09731 81 epkEEKKQVKIPRQSGVSSEVAEEEKEATKDAAEAKAQLPKSEQEKE----KALEEVLKEAISKAESATAVAKEAKDDAI 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 199 QAVKAHSSTLKTAMDNSEIAGEKKSAQWRTVEGALKErrkavdeaadallkakeeleKMKTIIEDAKKREIAGATPYITA 278
Cdd:pfam09731 157 QAVKAHTDSLKEASDTAEISREKATDSALQKAEALAE--------------------KLKEVINLAKQSEEEAAPPLLDA 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 279 AEEKLHSMIVDLDSVVKKVQAAQSEAKVVSQYHELVVQARDDFRKELDSITPDITPGWKGMSIsdlagtLSTDDLNALIA 358
Cdd:pfam09731 217 APETPPKLPEHLDNVEEKVEKAQSLAKLVDQYKELVASERIVFQQELVSIFPDIIPVLKEDNL------LSNDDLNSLIA 290
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 359 HAHRRIDQLNRELAQQKATEKQHIELALERQKlEEKRAFDSAVAKALEHHRS----EIQAEQDRKVEEVRDAMENEMRTQ 434
Cdd:pfam09731 291 HAHREIDQLSKKLAELKKREEKHIERALEKQK-EELDKLAEELSARLEEVRAadeaQLRLEFEREREEIRESYEEKLRTE 369
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 435 LRRQAAAHTDHLRDVLKVQEQELKFEFEQDLSEKLSEQElefhrrsqeqmDNFTLDINTAYARLRGIEQAVQSHAVAEEE 514
Cdd:pfam09731 370 LERQAEAHEEHLKDVLVEQEIELQREFLQDIKEKVEEER-----------AGRLLKLNELLANLKGLEKATSSHSEVEDE 438
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 515 ARKAHQLWLSVEALKYSMKTSSAEMPTIPLGSAVEAIRVSCSDNEFTQALTAAIPPESLTRGVYSEETLRARFYAVQKLA 594
Cdd:pfam09731 439 NRKAQQLWLAVEALRSTLEDGSADSRPRPLVRELKALKELASDDEVVKAALASLPEEAYQRGVYTEAALRERFRRVAKEV 518
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 595 GRVAMIDETKNSLYQYFLSYLQSLLLFPPKQlkppAELYPEDINTFKLLSYASYCIEHGDLELAAKFVNQLKGESRRVAQ 674
Cdd:pfam09731 519 RKVSLIDPEGAGLLSHALSYLLSKLMFKPKQ----GEADPAGDDVESILARAEYYLEEGDLDSAAREMNSLKGWSKKLAS 594
|
650 660
....*....|....*....|....
gi 1958769470 675 DWLKEARMTLETKQIVEILTTYAS 698
Cdd:pfam09731 595 DWLKEARRRLEVQQALELLQAEAA 618
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
194-529 |
2.89e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.93 E-value: 2.89e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 194 QNAAVQAVKAHSS-TLKTAMDNSEIAGEKKSAQWRTVEGALK--ERRKAVDEAADALLKAKEELEKMKTIIEDAKKR--- 267
Cdd:PTZ00121 1268 RQAAIKAEEARKAdELKKAEEKKKADEAKKAEEKKKADEAKKkaEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAaea 1347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 268 ---EIAGATPYITAAEEKLHSMIVDLDSVVKKVQAAQSEAKVVSQYHELVVQARDDfRKELDSITPDITPGWKGMSISDL 344
Cdd:PTZ00121 1348 akaEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED-KKKADELKKAAAAKKKADEAKKK 1426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 345 AGTLSTDDLNALIAHAHRRIDQLNR--------ELAQQKATEKQHIELAleRQKLEEKRAFDSAVAKALEHHR----SEI 412
Cdd:PTZ00121 1427 AEEKKKADEAKKKAEEAKKADEAKKkaeeakkaEEAKKKAEEAKKADEA--KKKAEEAKKADEAKKKAEEAKKkadeAKK 1504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 413 QAEQDRKVEEVRDAMENEMRTQLRR-QAAAHTDHLRDVLKVQEQElkfefEQDLSEKLSEQElefHRRSQEQMDNFTLDI 491
Cdd:PTZ00121 1505 AAEAKKKADEAKKAEEAKKADEAKKaEEAKKADEAKKAEEKKKAD-----ELKKAEELKKAE---EKKKAEEAKKAEEDK 1576
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 1958769470 492 NTAYAR---LRGIEQA---------VQSHAVAEEEARKAHQLWLSVEALK 529
Cdd:PTZ00121 1577 NMALRKaeeAKKAEEArieevmklyEEEKKMKAEEAKKAEEAKIKAEELK 1626
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
197-521 |
1.41e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 1.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 197 AVQAVKAHssTLKTAMDnsEIAGEKKSAQWRTVEGALKERRKAVDEAADALLKAKEELEKMKTIIEDAKKReiagatpyI 276
Cdd:COG1196 209 AEKAERYR--ELKEELK--ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE--------L 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 277 TAAEEKLHSMIVDLDSVVKKVQAAQSEAKVVSQYHELVVQARDDFRKELDSITpditpgwkgMSISDLAGTLstDDLNAL 356
Cdd:COG1196 277 EELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELE---------EELEELEEEL--EELEEE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 357 IAHAHRRIDQLNRELAQQKAT--EKQHIELALERQKLEEKRAFDSAVAKALEHHRSEIQAEQDRKVEEVRDAMENEMRTQ 434
Cdd:COG1196 346 LEEAEEELEEAEAELAEAEEAllEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEE 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 435 LRRQAAAHTDHLRDVLKVQEQELKFEFEQDLSEKLSEQELEFHRRS----QEQMDNFTLDINTAYARLRGIEQAVQSHAV 510
Cdd:COG1196 426 LEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEaallEAALAELLEELAEAAARLLLLLEAEADYEG 505
|
330
....*....|.
gi 1958769470 511 AEEEARKAHQL 521
Cdd:COG1196 506 FLEGVKAALLL 516
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
200-507 |
8.62e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 8.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 200 AVKAHSSTLKTamdNSEIagEKKSAQWRTVEGALKERRKAVDEAADALLKAKEELEKMKTIIEDaKKREIAGATPYITAA 279
Cdd:TIGR02168 665 SAKTNSSILER---RREI--EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE-LSRQISALRKDLARL 738
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 280 EEKLHSMIVDLDSVVKKVQAAQSEAKVVSQYHELVVQARDDFRKELDSITPDITPGWKGMSISDLAGTLSTDDLNALIAH 359
Cdd:TIGR02168 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 360 AHRRIDQLNRELAQQKATEKQHIELALERQKLEEKRAFDSAV-----------AKALEHHrSEIQAEQDRKVEEVRDAME 428
Cdd:TIGR02168 819 AANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEieeleelieelESELEAL-LNERASLEEALALLRSELE 897
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 429 NEM---------RTQLRRQAAAHTDHLRDvLKVQEQELKFEFEQdLSEKLSEQ---ELEFHrrsQEQMDNFTLDINTAYA 496
Cdd:TIGR02168 898 ELSeelreleskRSELRRELEELREKLAQ-LELRLEGLEVRIDN-LQERLSEEyslTLEEA---EALENKIEDDEEEARR 972
|
330
....*....|.
gi 1958769470 497 RLRGIEQAVQS 507
Cdd:TIGR02168 973 RLKRLENKIKE 983
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
187-482 |
9.11e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.61 E-value: 9.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 187 TRQTITAQNAAVQAVKAHSSTLKTAmdnseiagekkSAQWRTVEGALKERRKAVDEAADALLKAKEELEKMKTIIEDAKK 266
Cdd:COG4913 666 AEREIAELEAELERLDASSDDLAAL-----------EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQD 734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 267 R----EIAGATPYITAAEEKLHSmiVDLDSVVKKVQA------AQSEAKVVSQYHELV--------------------VQ 316
Cdd:COG4913 735 RleaaEDLARLELRALLEERFAA--ALGDAVERELREnleeriDALRARLNRAEEELEramrafnrewpaetadldadLE 812
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 317 ARDDFRKELDSITPDITPG-----------WKGMSISDLAGTLSTDdlnalIAHAHRRIDQLNRELAQQKATEKQHIELA 385
Cdd:COG4913 813 SLPEYLALLDRLEEDGLPEyeerfkellneNSIEFVADLLSKLRRA-----IREIKERIDPLNDSLKRIPFGPGRYLRLE 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 386 LERQKLEEKRAFDSAVAKALEHHRSEIQAEQDRKVEEVRDAMEnemrtQLRRQAAAHTDH-LRDVLKVQEQelkFEFEQD 464
Cdd:COG4913 888 ARPRPDPEVREFRQELRAVTSGASLFDEELSEARFAALKRLIE-----RLRSEEEESDRRwRARVLDVRNH---LEFDAE 959
|
330
....*....|....*...
gi 1958769470 465 LSEKLSEQELEFHRRSQE 482
Cdd:COG4913 960 EIDREDGEEVETYSSSGG 977
|
|
| ARGLU |
pfam15346 |
Arginine and glutamate-rich 1; ARGLU, arginine and glutamate-rich 1 protein family, is ... |
386-520 |
4.51e-06 |
|
Arginine and glutamate-rich 1; ARGLU, arginine and glutamate-rich 1 protein family, is required for the oestrogen-dependent expression of ESR1 target genes. It functions in cooperation with MED1. The family of proteins is found in eukaryotes.
Pssm-ID: 405931 [Multi-domain] Cd Length: 151 Bit Score: 46.97 E-value: 4.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 386 LERQKLEE------KRAFDSAVAKALEHHRSEIQAEQDRKVEEVRDAMENEMRTQLRRQAAAhtdhlrdvlKVQEQELKF 459
Cdd:pfam15346 3 AESKLLEEetarrvEEAVAKRVEEELEKRKDEIEAEVERRVEEARKIMEKQVLEELEREREA---------ELEEERRKE 73
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958769470 460 EFEQDLSEKLSEQELEFHRRSQEQMDNFTLDINTAYARLRGIEQAVQSHAVAEEEARKAHQ 520
Cdd:pfam15346 74 EEERKKREELERILEENNRKIEEAQRKEAEERLAMLEEQRRMKEERQRREKEEEEREKREQ 134
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
234-529 |
5.52e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.94 E-value: 5.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 234 KERRKAVDEAA----------DALLK---AKEELEKMKTII--------------EDAKK-----------------REI 269
Cdd:COG1196 155 EERRAIIEEAAgiskykerkeEAERKleaTEENLERLEDILgelerqleplerqaEKAERyrelkeelkeleaelllLKL 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 270 AGATPYITAAEEKLHSMIVDLDSVVKKVQAAQSEAKVVSQYHELVVQARDDFRKELDSITpditpgwkgMSISDLAGTLs 349
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELL---------AELARLEQDI- 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 350 tDDLNALIAHAHRRIDQLNRELAQQKATEKQH--------IELALERQKLEEKRAFDSAVAKALEHHRSEIQAEQDRKVE 421
Cdd:COG1196 305 -ARLEERRRELEERLEELEEELAELEEELEELeeeleeleEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEE 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 422 EVRDAME------------NEMRTQLRRQAAAHTDHLRDVLKVQEQELKFEFEQDLSEKLSEQELEFHRRSQEQMDNFTL 489
Cdd:COG1196 384 LAEELLEalraaaelaaqlEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLE 463
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1958769470 490 DINTAYARLRGIEQAVQshAVAEEEARKAHQLWLSVEALK 529
Cdd:COG1196 464 LLAELLEEAALLEAALA--ELLEELAEAAARLLLLLEAEA 501
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
169-472 |
1.02e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.07 E-value: 1.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 169 TAALAKSLEDALNQTATVTRQTITAQNAAVQAVKAHSSTLKTAMdnseiagekkSAQWRTVEGALKERRKAVDEAADAL- 247
Cdd:pfam12128 673 LAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEK----------QAYWQVVEGALDAQLALLKAAIAARr 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 248 LKAKEELEKMKTiiedAKKREIAGATPyitaAEEKLHSMIVDLDSVVKKV-QAAQSEAKVVSQ---YHELVVQARDDFRK 323
Cdd:pfam12128 743 SGAKAELKALET----WYKRDLASLGV----DPDVIAKLKREIRTLERKIeRIAVRRQEVLRYfdwYQETWLQRRPRLAT 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 324 ELDSITpditpgwkgMSISDLagtlsTDDLNALIAHAHRRIDQLNRELaqqKATEKQHIELALERQKLeekRAFDSAVAK 403
Cdd:pfam12128 815 QLSNIE---------RAISEL-----QQQLARLIADTKLRRAKLEMER---KASEKQQVRLSENLRGL---RCEMSKLAT 874
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958769470 404 ALEHHRSE----IQAEQDRKVEEVRDAMENEMrtqlrRQAAAHTDHLRDVLKVQEQELKFEFEQDLSEKLSEQ 472
Cdd:pfam12128 875 LKEDANSEqaqgSIGERLAQLEDLKLKRDYLS-----ESVKKYVEHFKNVIADHSGSGLAETWESLREEDHYQ 942
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
232-497 |
2.92e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 2.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 232 ALKERRKAVDEAADALLKAKEELEKMKTIIEDAKKREIAgatpyitaaeeklHSMIVDLDSVVKKVQAAQSEakvvsqyh 311
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQERREA-------------LQRLAEYSWDEIDVASAERE-------- 669
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 312 elvVQARDDFRKELDSitpditpgwkgmSISDLAGtlstddLNALIAHAHRRIDQLNRELAQQK----ATEKQHIELALE 387
Cdd:COG4913 670 ---IAELEAELERLDA------------SSDDLAA------LEEQLEELEAELEELEEELDELKgeigRLEKELEQAEEE 728
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 388 RQKLEEkrAFDSAVAKALEHHRSEI-----QAEQDRKVEEVRDAMENEmRTQLRRQAAAHTDHLRDVLkvqeQELKFEFE 462
Cdd:COG4913 729 LDELQD--RLEAAEDLARLELRALLeerfaAALGDAVERELRENLEER-IDALRARLNRAEEELERAM----RAFNREWP 801
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958769470 463 QDLSE----------------KLSEQEL-----EFHRRSQEQMDNFTLDINTAYAR 497
Cdd:COG4913 802 AETADldadleslpeylalldRLEEDGLpeyeeRFKELLNENSIEFVADLLSKLRR 857
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
174-521 |
6.52e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.67 E-value: 6.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 174 KSLEDALNQTATVTRQTITAQNAAVQAVKAHSSTLKTAMDNSEIAGEKKSAQWRTVEGALKERRKAVDEAADALLKAKE- 252
Cdd:PTZ00121 1364 EKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEa 1443
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 253 -ELEKMKTIIEDAKKREIAGATpyitaAEEKlhsmivdldsvvKKVQAAQSEAKVVSQYHELVVQArDDFRKELDSITPD 331
Cdd:PTZ00121 1444 kKADEAKKKAEEAKKAEEAKKK-----AEEA------------KKADEAKKKAEEAKKADEAKKKA-EEAKKKADEAKKA 1505
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 332 ITPGWKGMSISDLAGTLSTDDLNAliAHAHRRIDQLNRELAQQKATEKQHIElalERQKLEEKRAFDSAVAKALEHHRSE 411
Cdd:PTZ00121 1506 AEAKKKADEAKKAEEAKKADEAKK--AEEAKKADEAKKAEEKKKADELKKAE---ELKKAEEKKKAEEAKKAEEDKNMAL 1580
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 412 IQAEQDRKVEEVRDAMENEMRTQLRRQAAAHTDHLRDVLKVQEQELKFEFEQDLSEKLSEQELEFHRRSQEqmdnftLDI 491
Cdd:PTZ00121 1581 RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEE------LKK 1654
|
330 340 350
....*....|....*....|....*....|
gi 1958769470 492 NTAYARLRGIEQAVQshavAEEEARKAHQL 521
Cdd:PTZ00121 1655 AEEENKIKAAEEAKK----AEEDKKKAEEA 1680
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
243-480 |
1.26e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 243 AADALLKAKEELEKMKTIIEdAKKREIAGATPYITAAEEKLHSMIVDLDSVVKKVQAAQSEAKVVSQYHELVVQARDDFR 322
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIA-ELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 323 KELDSITPDITP----GWKGMSISDLAGTLSTDDLNALIAHAhRRIDQLNRELAQQ-KATEKQHIELALERQKLEEKRAF 397
Cdd:COG4942 97 AELEAQKEELAEllraLYRLGRQPPLALLLSPEDFLDAVRRL-QYLKYLAPARREQaEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 398 DSAVAKALEHHRSEIQAEQDRKveevrdameNEMRTQLRRQAAAHTDHLRDvLKVQEQELkfefeQDLSEKLSEQELEFH 477
Cdd:COG4942 176 LEALLAELEEERAALEALKAER---------QKLLARLEKELAELAAELAE-LQQEAEEL-----EALIARLEAEAAAAA 240
|
...
gi 1958769470 478 RRS 480
Cdd:COG4942 241 ERT 243
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
360-521 |
2.35e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.75 E-value: 2.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 360 AHRRIDQLNRELAQQKATEKQHIElalERQKLEEKRAFDSAvAKALEHHRSEI--------QAEQDRKVEEVRDAMENEM 431
Cdd:PTZ00121 1120 AKKKAEDARKAEEARKAEDARKAE---EARKAEDAKRVEIA-RKAEDARKAEEarkaedakKAEAARKAEEVRKAEELRK 1195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 432 RTQLRR-QAAAHTDHLRDVLKVQEQELKFEFEQDLSEKLSEQELEFHRRSQEQMDNFTLdinTAYARLRGIEQAVQSHAV 510
Cdd:PTZ00121 1196 AEDARKaEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEI---RKFEEARMAHFARRQAAI 1272
|
170
....*....|.
gi 1958769470 511 AEEEARKAHQL 521
Cdd:PTZ00121 1273 KAEEARKADEL 1283
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
264-520 |
3.44e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.28 E-value: 3.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 264 AKKREIAGATPYITAAEEKLHsmivdldsvvkkvqAAQSEAKVVSQYHELVVQARDDFRKELDSITPDItpgwkgmsisd 343
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIA--------------ELEKALAELRKELEELEEELEQLRKELEELSRQI----------- 728
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 344 lagtlstDDLNALIAHAHRRIDQLNRELAQQKATEKqhiELALERQKLEEKRAFDSAVAKALEHHRseiqAEQDRKVEEV 423
Cdd:TIGR02168 729 -------SALRKDLARLEAEVEQLEERIAQLSKELT---ELEAEIEELEERLEEAEEELAEAEAEI----EELEAQIEQL 794
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 424 RDAMENEmRTQLRRQAAAHTDHLRDVLKVQEQELKFEFEQDLSEKLSEQELEFHRRSQEQMDNFTLDINTAYARLRGIEQ 503
Cdd:TIGR02168 795 KEELKAL-REALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES 873
|
250 260
....*....|....*....|
gi 1958769470 504 AVQSHAV---AEEEARKAHQ 520
Cdd:TIGR02168 874 ELEALLNeraSLEEALALLR 893
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
193-538 |
5.34e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 5.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 193 AQNAAVQAVKAHSSTLKTAMDNSEIAGEKKSAQWRTVEGALKERRKAVDEAADALLKAKEELEKMKTI---IEDAKKREI 269
Cdd:PTZ00121 1089 ADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIarkAEDARKAEE 1168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 270 AGATPYITAAEEKLHSMIVDLDSVVKKVQAAQsEAKVVSQYHElvVQARDDFRKELDSitpditpgwkgmsisdlagtls 349
Cdd:PTZ00121 1169 ARKAEDAKKAEAARKAEEVRKAEELRKAEDAR-KAEAARKAEE--ERKAEEARKAEDA---------------------- 1223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 350 tddlnaliahahRRIDQLNR-ELAQQKATEKQHIElalERQKLEEKRAFDSAVAKALEHHRSEIQAEQDRKVEEVRDAME 428
Cdd:PTZ00121 1224 ------------KKAEAVKKaEEAKKDAEEAKKAE---EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEE 1288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 429 NEMRTQLRRQaaahtdhlRDVLKVQEQELKFEfEQDLSEKLSEQELEFHRRSQEQMDNFTLDINTAYARlRGIEQAVQSH 508
Cdd:PTZ00121 1289 KKKADEAKKA--------EEKKKADEAKKKAE-EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAA-KAEAEAAADE 1358
|
330 340 350
....*....|....*....|....*....|
gi 1958769470 509 AVAEEEARKAHQLWLSVEALKYSMKTSSAE 538
Cdd:PTZ00121 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAE 1388
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
279-501 |
1.18e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 279 AEEKLHSMIVDLDSVVKKVQAAQSEAKVVSQYHELVVQARDDFRKELDSITPDItpgwkgmsisDLAGtlstddlnalia 358
Cdd:COG4913 608 NRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEI----------DVAS------------ 665
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 359 hAHRRIDQLNRELAQQKATEKQHIELALERQKLEEKRafdsavaKALEHHRSEIQAEQDRKVEEvrdamenemRTQLRRQ 438
Cdd:COG4913 666 -AEREIAELEAELERLDASSDDLAALEEQLEELEAEL-------EELEEELDELKGEIGRLEKE---------LEQAEEE 728
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958769470 439 AAAHTDHLRDVLKVQEQELKFEFEQDLSE-KLSEQELEFHRRSQEQMDNFTLDINTAYARLRGI 501
Cdd:COG4913 729 LDELQDRLEAAEDLARLELRALLEERFAAaLGDAVERELRENLEERIDALRARLNRAEEELERA 792
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
365-520 |
1.30e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.26 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 365 DQLNRELAQQKATEKQHIELALERQKLEEKRAFDSAVAKALEHHRSEIQAEQDRKVEEVRDAMENEMRTQLRRQAAAH-- 442
Cdd:TIGR00618 256 LKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHvk 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 443 -------TDHLRDVLKVQEQELKFEFEQDLS---EKLSEQELEFHRRSQEQMDNFTLDINTAYARLRGIEQAVQSHAVAE 512
Cdd:TIGR00618 336 qqssieeQRRLLQTLHSQEIHIRDAHEVATSireISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTR 415
|
....*...
gi 1958769470 513 EEARKAHQ 520
Cdd:TIGR00618 416 TSAFRDLQ 423
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
351-522 |
1.48e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 351 DDLNALIAHAHRRIDQLNRELAQQKATEKQHIELALERQKLEEKRAFDSAVAKALEHHRSEIQAEQ-----DRKVEEVRD 425
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAelaelPERLEELEE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 426 AME--NEMRTQLRRQAAAHTDhLRDVLKVQEQELKFEFEQDLSEKLSEqelefHRRSQEQMDNFTLDINTAYARLRGIEQ 503
Cdd:COG4717 154 RLEelRELEEELEELEAELAE-LQEELEELLEQLSLATEEELQDLAEE-----LEELQQRLAELEEELEEAQEELEELEE 227
|
170
....*....|....*....
gi 1958769470 504 AVQSHAVAEEEARKAHQLW 522
Cdd:COG4717 228 ELEQLENELEAAALEERLK 246
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
351-519 |
1.80e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.98 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 351 DDLNALIAHAHRRIDQLNRELAQQKAtekqhiELALERQKLEEKRAFDSAVAKALEHHRSEIQ------AEQDRKVEEVR 424
Cdd:TIGR02169 705 DELSQELSDASRKIGEIEKEIEQLEQ------EEEKLKERLEELEEDLSSLEQEIENVKSELKeleariEELEEDLHKLE 778
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 425 DAMEN-----------EMRTQLRRQAAAHTDhLRDVLKVQEQEL-KFEFEQDLSEKLSEQELEFHRRSQEQMDNFTLDIN 492
Cdd:TIGR02169 779 EALNDlearlshsripEIQAELSKLEEEVSR-IEARLREIEQKLnRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE 857
|
170 180
....*....|....*....|....*..
gi 1958769470 493 TAYARLRGIEQAVQSHAVAEEEARKAH 519
Cdd:TIGR02169 858 NLNGKKEELEEELEELEAALRDLESRL 884
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
351-520 |
2.39e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 2.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 351 DDLNAL---IAHAHRRIDQL-----NRELAQQKATEKQHIELALERQKLEEKRAFDSAVAKALEHHRSEIQAEQDRK--- 419
Cdd:COG4913 235 DDLERAheaLEDAREQIELLepireLAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELerl 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 420 ------VEEVRDAMENEMR-------TQLRRQAAAHTDHLRDVLKVQEQelkfeFEQ-----DLSEKLSEQEL-EFHRRS 480
Cdd:COG4913 315 earldaLREELDELEAQIRgnggdrlEQLEREIERLERELEERERRRAR-----LEAllaalGLPLPASAEEFaALRAEA 389
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1958769470 481 QEQMDNFTldintayARLRGIEQAVQSHAVAEEEARKAHQ 520
Cdd:COG4913 390 AALLEALE-------EELEALEEALAEAEAALRDLRRELR 422
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
170-475 |
2.40e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.46 E-value: 2.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 170 AALAKSLEDALNQTATVTRQTITAQNAAVQAVKAHSSTLKTAMDNSEIAG----EKKSAQWRTVEGAL-------KERRK 238
Cdd:COG1196 459 EALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEgvkaALLLAGLRGLAGAVavligveAAYEA 538
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 239 AVDEAADALLKAK--EELEKMKTIIEDAKKREIAGAT--PYITAAEEKLHSMIVDLDSVVKKVQAAQSEAkvvsQYHELV 314
Cdd:COG1196 539 ALEAALAAALQNIvvEDDEVAAAAIEYLKAAKAGRATflPLDKIRARAALAAALARGAIGAAVDLVASDL----READAR 614
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 315 VQARDDFRKELDSITPDITPGWKGMSISDLAGTLSTDDLNALIAHAHRRIDQLNRELAQQKATEKQhielaLERQKLEEK 394
Cdd:COG1196 615 YYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE-----LEELAERLA 689
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 395 RAFDSAVAKALEHHRSEIQAEQDRKVEEVRDAMENEMRTQLRRQAAAHTDHLRDVLKVQEQELKFEFEQDLSEKLSEQEL 474
Cdd:COG1196 690 EEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELEREL 769
|
.
gi 1958769470 475 E 475
Cdd:COG1196 770 E 770
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
369-542 |
2.90e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.88 E-value: 2.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 369 RELAQQKATEKQHIELA-LERQKLEEKRAFDSAVAKALEHHRSEIQAEQDRKVEEVRDAMENEMRTqlRRQAAAHTDHLR 447
Cdd:pfam17380 438 RRLEEERAREMERVRLEeQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEE--RKQAMIEEERKR 515
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 448 DVLK---------VQEQELKFEFEQdlsEKLSEQELEFHRRSQEQMDNFTLDINTAYARLRgiEQAVQSHAVAEEEARKA 518
Cdd:pfam17380 516 KLLEkemeerqkaIYEEERRREAEE---ERRKQQEMEERRRIQEQMRKATEERSRLEAMER--EREMMRQIVESEKARAE 590
|
170 180
....*....|....*....|....*.
gi 1958769470 519 HQLWLSVEALK--YSMKTSSAEMPTI 542
Cdd:pfam17380 591 YEATTPITTIKpiYRPRISEYQPPDV 616
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
237-458 |
4.45e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 4.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 237 RKAVDEAADALLKAKEELEKMKTIIEDAK-KREIAGATPYITAAEEKLHSMIVDLDSVVKKVQAAQSEAKVvsqyhELVV 315
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERAHEALEDAReQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRL-----ELLE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 316 QARDDFRKELDSITPDItpgwkgmsisdlagtlstDDLNALIAHAHRRIDQLNRELAQQKATEKQHIE-----LALERQK 390
Cdd:COG4913 295 AELEELRAELARLEAEL------------------ERLEARLDALREELDELEAQIRGNGGDRLEQLEreierLERELEE 356
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958769470 391 LEEKRA-FDSAV----------AKALEHHRSEIQAEQDRkVEEVRDAMENEmRTQLRRQAAAHTDHLRDVlkvqEQELK 458
Cdd:COG4913 357 RERRRArLEALLaalglplpasAEEFAALRAEAAALLEA-LEEELEALEEA-LAEAEAALRDLRRELREL----EAEIA 429
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
229-423 |
5.10e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.14 E-value: 5.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 229 VEGALKERRKAVDEAADALLKAKEELEKMKTIIEDAkKREIAgatpyitaaeeKLHSMIVDLDSVVKKVQAAQSEAKVVS 308
Cdd:COG1579 22 LEHRLKELPAELAELEDELAALEARLEAAKTELEDL-EKEIK-----------RLELEIEEVEARIKKYEEQLGNVRNNK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 309 QYHELvvqarddfRKELDSITPDItpgwkgmsisdlagtlstDDLNALIAHAHRRIDQLNRELAQQKAtekqhiELALER 388
Cdd:COG1579 90 EYEAL--------QKEIESLKRRI------------------SDLEDEILELMERIEELEEELAELEA------ELAELE 137
|
170 180 190
....*....|....*....|....*....|....*.
gi 1958769470 389 QKLEEKRA-FDSAVAKaLEHHRSEIQAEQDRKVEEV 423
Cdd:COG1579 138 AELEEKKAeLDEELAE-LEAELEELEAEREELAAKI 172
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
169-457 |
5.16e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.41 E-value: 5.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 169 TAALAKS-LEDALNQTATVTRQTITAQNAAVQAVKAHSSTLKTAMdNSEIAGEKKSAqwRTVEGALKERRKAVDEAADAL 247
Cdd:PRK02224 296 DDLLAEAgLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAH-NEEAESLREDA--DDLEERAEELREEAAELESEL 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 248 LKAKEELEKMKTIIEDAKKReiagatpyITAAEEKLHSMIVDLDSVvkkvqaaqseakvvSQYHELVVQARDDFRKELDS 327
Cdd:PRK02224 373 EEAREAVEDRREEIEELEEE--------IEELRERFGDAPVDLGNA--------------EDFLEELREERDELREREAE 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 328 ITPDITPGWK-----------------GMSISDLAGTLSTDDlnaliahAHRRIDQLNRELAQQKATE----------KQ 380
Cdd:PRK02224 431 LEATLRTARErveeaealleagkcpecGQPVEGSPHVETIEE-------DRERVEELEAELEDLEEEVeeveerleraED 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 381 HIELALERQKLEEKRafdSAVAKALEHHRSEIQAEQDRkVEEVR---DAMENEMRTQLRRQAAAH--TDHLRDVLKVQEQ 455
Cdd:PRK02224 504 LVEAEDRIERLEERR---EDLEELIAERRETIEEKRER-AEELReraAELEAEAEEKREAAAEAEeeAEEAREEVAELNS 579
|
..
gi 1958769470 456 EL 457
Cdd:PRK02224 580 KL 581
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
359-482 |
6.80e-03 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 39.41 E-value: 6.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 359 HAHRRIDQLNRELaqqKATEKQHIELALERQKLEEKRAFDSAVAKALEHHRSEIQaeqdrKVEEVRDAMENEMRTqLRRQ 438
Cdd:pfam15905 195 HSKGKVAQLEEKL---VSTEKEKIEEKSETEKLLEYITELSCVSEQVEKYKLDIA-----QLEELLKEKNDEIES-LKQS 265
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1958769470 439 AAAHTDHLRDVLKVQEQELKfEFEQDLSEKLSEQELEFHRRSQE 482
Cdd:pfam15905 266 LEEKEQELSKQIKDLNEKCK-LLESEKEELLREYEEKEQTLNAE 308
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
362-520 |
7.44e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 39.75 E-value: 7.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 362 RRIDQLNRELAQQKATEKQHIELALERQKLEEKRAfdsAVAKALEHHRSEIqaEQDRKVEEVRDAMENemRTQLRRQAAA 441
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELE---ELEAELEELREEL--EKLEKLLQLLPLYQE--LEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 442 HTDHLRDvLKVQEQELKfEFEQDLsEKLSEQELEFHRRSQEQMDNFTLDINTAYARL-RGIEQAVQSHAVAEEEARKAHQ 520
Cdd:COG4717 144 LPERLEE-LEERLEELR-ELEEEL-EELEAELAELQEELEELLEQLSLATEEELQDLaEELEELQQRLAELEEELEEAQE 220
|
|
| COG4223 |
COG4223 |
Uncharacterized conserved protein [Function unknown]; |
496-699 |
8.32e-03 |
|
Uncharacterized conserved protein [Function unknown];
Pssm-ID: 443367 [Multi-domain] Cd Length: 259 Bit Score: 38.88 E-value: 8.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 496 ARLRGIEQAVQSHAVAEEEARKAHQLWLSVEALKYSMKTSSaemptiPLGSAVEAIRVSCSDNEFTQALTAAippesLTR 575
Cdd:COG4223 67 ARLAALEAKAAAPEAEAAAAARAAALALAAAALRAAVERGQ------PFAAELAALEALAPDAPALAALAAF-----AAT 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 576 GVYSEETLRARFYAVQKLAGRVAMIDETKNSLYQYFLSYLQSLLlfppkQLKPPAElyPEDINTFKLLSYASYCIEHGDL 655
Cdd:COG4223 136 GVPTLAALRAEFPAAARAALAAARAPEADASWLDRLLAFARSLV-----TVRRVGP--VEGDDPDAILARAEAALAAGDL 208
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1958769470 656 ELAAKFVNQLKGESRRVAQDWLKEARMTLETKQIVEILTTYASA 699
Cdd:COG4223 209 AGALAELEALPEAAQAAAAPWIAKAEARLAADAALQALAAQALA 252
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
115-305 |
9.47e-03 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 39.55 E-value: 9.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 115 SEVMTDSELPMAQTQETNGDTPASAAGDPapevehedtintecpntdegTSTFVTAAL--AKSLEDALNQTATVTRQTIT 192
Cdd:PRK05035 517 SAVIAAREARKAQARARQAEKQAAAAADP--------------------KKAAVAAAIarAKAKKAAQQAANAEAEEEVD 576
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769470 193 AQNAAVQAVKAHSSTLKTAMDNSEIAGEKKSAQwrtvegalKERRKAVDEAADALLKAKEELEKMKTI---IEDAKKREI 269
Cdd:PRK05035 577 PKKAAVAAAIARAKAKKAAQQAASAEPEEQVAE--------VDPKKAAVAAAIARAKAKKAEQQANAEpeePVDPRKAAV 648
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1958769470 270 AGATPYITA----AEEKLHSMIVDLDSVVKKVQAAQSEAK 305
Cdd:PRK05035 649 AAAIARAKArkaaQQQANAEPEEAEDPKKAAVAAAIARAK 688
|
|
| |
