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Conserved domains on  [gi|1958772524|ref|XP_038964607|]
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juxtaposed with another zinc finger protein 1 isoform X2 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SFP1 super family cl25788
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 105-166 1.93e-15

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


The actual alignment was detected with superfamily member COG5189:

Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 72.83  E-value: 1.93e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958772524 105 EEKPFACPVPGCKKRYKNVNGIKYHAKNGHRTQIRVR--------------KPFKCR-CGKSYKTAQGLRHHTINFH 166
Cdd:COG5189   346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHEnpspekmnifsakdKPYRCEvCDKRYKNLNGLKYHRKHSH 422
 
Name Accession Description Interval E-value
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 105-166 1.93e-15

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 72.83  E-value: 1.93e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958772524 105 EEKPFACPVPGCKKRYKNVNGIKYHAKNGHRTQIRVR--------------KPFKCR-CGKSYKTAQGLRHHTINFH 166
Cdd:COG5189   346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHEnpspekmnifsakdKPYRCEvCDKRYKNLNGLKYHRKHSH 422
zf-C2H2_aberr pfam17017
Aberrant zinc-finger; This is a family of largely microsporidia-specific proteins with an ...
 109-132 3.19e-04

Aberrant zinc-finger; This is a family of largely microsporidia-specific proteins with an aberrant zinc-finger motif of Cx(4)C2H repeated.


Pssm-ID: 374942  Cd Length: 165  Bit Score: 39.46  E-value: 3.19e-04
                          10        20
                  ....*....|....*....|....
gi 1958772524 109 FACPVPGCKKRYKNVNGIKYHAKN 132
Cdd:pfam17017 130 IYCRIPGCGKQFKSLMAYKYHCGN 153
 
Name Accession Description Interval E-value
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 105-166 1.93e-15

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 72.83  E-value: 1.93e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958772524 105 EEKPFACPVPGCKKRYKNVNGIKYHAKNGHRTQIRVR--------------KPFKCR-CGKSYKTAQGLRHHTINFH 166
Cdd:COG5189   346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHEnpspekmnifsakdKPYRCEvCDKRYKNLNGLKYHRKHSH 422
zf-C2H2_aberr pfam17017
Aberrant zinc-finger; This is a family of largely microsporidia-specific proteins with an ...
 109-132 3.19e-04

Aberrant zinc-finger; This is a family of largely microsporidia-specific proteins with an aberrant zinc-finger motif of Cx(4)C2H repeated.


Pssm-ID: 374942  Cd Length: 165  Bit Score: 39.46  E-value: 3.19e-04
                          10        20
                  ....*....|....*....|....
gi 1958772524 109 FACPVPGCKKRYKNVNGIKYHAKN 132
Cdd:pfam17017 130 IYCRIPGCGKQFKSLMAYKYHCGN 153
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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