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Conserved domains on  [gi|2043829268|ref|XP_041575075|]
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MHC class II transactivator isoform X1 [Taeniopygia guttata]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PPP1R42 super family cl42388
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
783-1108 5.12e-37

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


The actual alignment was detected with superfamily member cd00116:

Pssm-ID: 455733 [Multi-domain]  Cd Length: 319  Bit Score: 142.11  E-value: 5.12e-37
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043829268  783 YIRRLQINTLCPERLLELLCCVYETQnnyLLQHVALrlEPELSFLGIVLTPP--DVHVLHSVLKRSRKEFSLDLQnssid 860
Cdd:cd00116      4 SLKGELLKTERATELLPKLLCLQVLR---LEGNTLG--EEAAKALASALRPQpsLKELCLSLNETGRIPRGLQSL----- 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043829268  861 MQGLQALVSLRNVTSFRASLS-DTVRLWKSLEQTKDYELLK---ASTEKFVLdPFKAKTMKDISdlSDLVELQekMMNCV 936
Cdd:cd00116     74 LQGLTKGCGLQELDLSDNALGpDGCGVLESLLRSSSLQELKlnnNGLGDRGL-RLLAKGLKDLP--PALEKLV--LGRNR 148
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043829268  937 QEASGCT--SYEIPAIRNLRKLEFALGPAcGLQGLLKLVKILAAFPSLQHLDLDalsENSIGDEGAKSLSEVFPTLTSLE 1014
Cdd:cd00116    149 LEGASCEalAKALRANRDLKELNLANNGI-GDAGIRALAEGLKANCNLEVLDLN---NNGLTDEGASALAETLASLKSLE 224
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043829268 1015 TLNLSQNKITDVGAENLATALPSLSSL-KTLSLYNNNICDFGAENLAKVLPAMTSLRVLDVQYNKITGVGAQQLtDSLRK 1093
Cdd:cd00116    225 VLNLGDNNLTDAGAAALASALLSPNISlLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLL-AESLL 303
                          330
                   ....*....|....*
gi 2043829268 1094 CPHMKNLVMWNPTIP 1108
Cdd:cd00116    304 EPGNELESLWVKDDS 318
NACHT pfam05729
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in ...
397-567 4.36e-32

NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.


:

Pssm-ID: 428606 [Multi-domain]  Cd Length: 166  Bit Score: 122.80  E-value: 4.36e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043829268  397 VIVVLGKAGMGKSILIQKICQDWSNGE-FSQFEFVFWFDCKQLSLPEKQYSLKELLLEFFVKPQEGSKEIFEYMLQNPGK 475
Cdd:pfam05729    2 TVILQGEAGSGKTTLLQKLALLWAQGKlPQGFDFVFFLPCRELSRSGNARSLADLLFSQWPEPAAPVSEVWAVILELPER 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043829268  476 VLLIFDGFKGLHDHENFPRcsasqpekDLCSIKELLSGLIQKKVLNGCTLLFTARPK--DKLYQYMSKVDkTIEIVGFSP 553
Cdd:pfam05729   82 LLLILDGLDELVSDLGQLD--------GPCPVLTLLSSLLRKKLLPGASLLLTVRPDalRDLRRGLEEPR-YLEVRGFSE 152
                          170
                   ....*....|....
gi 2043829268  554 QQRELYITKYFEES 567
Cdd:pfam05729  153 SDRKQYVRKYFSDE 166
COG5635 super family cl26020
Predicted NTPase, NACHT family domain [Signal transduction mechanisms];
281-483 1.46e-04

Predicted NTPase, NACHT family domain [Signal transduction mechanisms];


The actual alignment was detected with superfamily member COG5635:

Pssm-ID: 227922 [Multi-domain]  Cd Length: 824  Bit Score: 45.94  E-value: 1.46e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043829268  281 TDRLAHLEEFQEVQDSIISSEEPFKRPEQVE--TFCSSLkdYFRDTCKSVtmEREVNLDHLFIdrtLVQSQTETKTGKNS 358
Cdd:COG5635    112 TWLRLLGAQTTRIDDDPLLLQQLRCEWQESKilAQAGTL--LELLIARGV--QSQDKLIDVNI---LEEVPLASQRSKRI 184
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043829268  359 AkamekelvtcSLQEKEKTAIDRSQIFQIPQRKDLETKV-----------IVVLGKAGMGKSILIQKICQDWSNGEFSQF 427
Cdd:COG5635    185 F----------DLNTKGEKRFDEEFLLELTQSADDQDALpglealekyakLLILGAPGSGKTTFLQRLALWLAQRTLEPE 254
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2043829268  428 EFVFWFDCKQLSLP---EKQYSLKELLLEFFVKpQEGSKEI---FEYMLQNpGKVLLIFDGF 483
Cdd:COG5635    255 DVPIFLLLNAFALArkfEKQLSLIDYLAEELFS-QGIAKQLieaHQELLKT-GKLLLLLDGL 314
NLRC4_HD2 super family cl39284
NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein ...
743-815 3.55e-04

NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein and NOD2 protein.


The actual alignment was detected with superfamily member pfam17776:

Pssm-ID: 436035  Cd Length: 122  Bit Score: 41.50  E-value: 3.55e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2043829268  743 LDLMPRFLAGL------MFLQDdpSFCSLSNEDEKQStkkqktLLKYIRRLQINTLCPERLLELLCCVYETQNNYLLQH 815
Cdd:pfam17776   52 LDLFLRFLFGLlneenqRLLEG--LLGCKLSSEIKQE------LLQWIKSLIQKELSSERFLNLFHCLYELQDESFVKE 122
 
Name Accession Description Interval E-value
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
783-1108 5.12e-37

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 142.11  E-value: 5.12e-37
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043829268  783 YIRRLQINTLCPERLLELLCCVYETQnnyLLQHVALrlEPELSFLGIVLTPP--DVHVLHSVLKRSRKEFSLDLQnssid 860
Cdd:cd00116      4 SLKGELLKTERATELLPKLLCLQVLR---LEGNTLG--EEAAKALASALRPQpsLKELCLSLNETGRIPRGLQSL----- 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043829268  861 MQGLQALVSLRNVTSFRASLS-DTVRLWKSLEQTKDYELLK---ASTEKFVLdPFKAKTMKDISdlSDLVELQekMMNCV 936
Cdd:cd00116     74 LQGLTKGCGLQELDLSDNALGpDGCGVLESLLRSSSLQELKlnnNGLGDRGL-RLLAKGLKDLP--PALEKLV--LGRNR 148
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043829268  937 QEASGCT--SYEIPAIRNLRKLEFALGPAcGLQGLLKLVKILAAFPSLQHLDLDalsENSIGDEGAKSLSEVFPTLTSLE 1014
Cdd:cd00116    149 LEGASCEalAKALRANRDLKELNLANNGI-GDAGIRALAEGLKANCNLEVLDLN---NNGLTDEGASALAETLASLKSLE 224
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043829268 1015 TLNLSQNKITDVGAENLATALPSLSSL-KTLSLYNNNICDFGAENLAKVLPAMTSLRVLDVQYNKITGVGAQQLtDSLRK 1093
Cdd:cd00116    225 VLNLGDNNLTDAGAAALASALLSPNISlLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLL-AESLL 303
                          330
                   ....*....|....*
gi 2043829268 1094 CPHMKNLVMWNPTIP 1108
Cdd:cd00116    304 EPGNELESLWVKDDS 318
NACHT pfam05729
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in ...
397-567 4.36e-32

NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.


Pssm-ID: 428606 [Multi-domain]  Cd Length: 166  Bit Score: 122.80  E-value: 4.36e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043829268  397 VIVVLGKAGMGKSILIQKICQDWSNGE-FSQFEFVFWFDCKQLSLPEKQYSLKELLLEFFVKPQEGSKEIFEYMLQNPGK 475
Cdd:pfam05729    2 TVILQGEAGSGKTTLLQKLALLWAQGKlPQGFDFVFFLPCRELSRSGNARSLADLLFSQWPEPAAPVSEVWAVILELPER 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043829268  476 VLLIFDGFKGLHDHENFPRcsasqpekDLCSIKELLSGLIQKKVLNGCTLLFTARPK--DKLYQYMSKVDkTIEIVGFSP 553
Cdd:pfam05729   82 LLLILDGLDELVSDLGQLD--------GPCPVLTLLSSLLRKKLLPGASLLLTVRPDalRDLRRGLEEPR-YLEVRGFSE 152
                          170
                   ....*....|....
gi 2043829268  554 QQRELYITKYFEES 567
Cdd:pfam05729  153 SDRKQYVRKYFSDE 166
COG5635 COG5635
Predicted NTPase, NACHT family domain [Signal transduction mechanisms];
281-483 1.46e-04

Predicted NTPase, NACHT family domain [Signal transduction mechanisms];


Pssm-ID: 227922 [Multi-domain]  Cd Length: 824  Bit Score: 45.94  E-value: 1.46e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043829268  281 TDRLAHLEEFQEVQDSIISSEEPFKRPEQVE--TFCSSLkdYFRDTCKSVtmEREVNLDHLFIdrtLVQSQTETKTGKNS 358
Cdd:COG5635    112 TWLRLLGAQTTRIDDDPLLLQQLRCEWQESKilAQAGTL--LELLIARGV--QSQDKLIDVNI---LEEVPLASQRSKRI 184
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043829268  359 AkamekelvtcSLQEKEKTAIDRSQIFQIPQRKDLETKV-----------IVVLGKAGMGKSILIQKICQDWSNGEFSQF 427
Cdd:COG5635    185 F----------DLNTKGEKRFDEEFLLELTQSADDQDALpglealekyakLLILGAPGSGKTTFLQRLALWLAQRTLEPE 254
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2043829268  428 EFVFWFDCKQLSLP---EKQYSLKELLLEFFVKpQEGSKEI---FEYMLQNpGKVLLIFDGF 483
Cdd:COG5635    255 DVPIFLLLNAFALArkfEKQLSLIDYLAEELFS-QGIAKQLieaHQELLKT-GKLLLLLDGL 314
NLRC4_HD2 pfam17776
NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein ...
743-815 3.55e-04

NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein and NOD2 protein.


Pssm-ID: 436035  Cd Length: 122  Bit Score: 41.50  E-value: 3.55e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2043829268  743 LDLMPRFLAGL------MFLQDdpSFCSLSNEDEKQStkkqktLLKYIRRLQINTLCPERLLELLCCVYETQNNYLLQH 815
Cdd:pfam17776   52 LDLFLRFLFGLlneenqRLLEG--LLGCKLSSEIKQE------LLQWIKSLIQKELSSERFLNLFHCLYELQDESFVKE 122
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal ...
912-1087 1.39e-03

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms, RNA processing and modification];


Pssm-ID: 227563 [Multi-domain]  Cd Length: 388  Bit Score: 42.22  E-value: 1.39e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043829268  912 KAKTMKDISDLSDLVELQEKMMNCVQ----------EASGCTSYEIPAIRNLRKLEFAlgpaCGLQGLLK---------L 972
Cdd:COG5238      9 KKLKLETKEDVKGVVEELEMMDELVEvdlsgntigtEAMEELCNVIANVRNLRVVNFS----DAFTGRDKdelysnlvmL 84
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043829268  973 VKILAAFPSLQHLDLdalSENSIGDEGAKSLSEVFPTLTSLETLNLSQNKITDVGAENLATALPSLSSLKTLSLY----- 1047
Cdd:COG5238     85 LKALLKCPRLQKVDL---SDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKpklev 161
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....
gi 2043829268 1048 ----NNNICDFGAENLAKVLPAMTSLRVLDVQYNKITGVGAQQL 1087
Cdd:COG5238    162 vicgRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTML 205
LRR_6 pfam13516
Leucine Rich repeat;
1009-1032 2.71e-03

Leucine Rich repeat;


Pssm-ID: 433274 [Multi-domain]  Cd Length: 24  Bit Score: 36.05  E-value: 2.71e-03
                           10        20
                   ....*....|....*....|....
gi 2043829268 1009 TLTSLETLNLSQNKITDVGAENLA 1032
Cdd:pfam13516    1 SNTHLTTLDLSGNDIGDEGAEALA 24
 
Name Accession Description Interval E-value
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
783-1108 5.12e-37

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 142.11  E-value: 5.12e-37
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043829268  783 YIRRLQINTLCPERLLELLCCVYETQnnyLLQHVALrlEPELSFLGIVLTPP--DVHVLHSVLKRSRKEFSLDLQnssid 860
Cdd:cd00116      4 SLKGELLKTERATELLPKLLCLQVLR---LEGNTLG--EEAAKALASALRPQpsLKELCLSLNETGRIPRGLQSL----- 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043829268  861 MQGLQALVSLRNVTSFRASLS-DTVRLWKSLEQTKDYELLK---ASTEKFVLdPFKAKTMKDISdlSDLVELQekMMNCV 936
Cdd:cd00116     74 LQGLTKGCGLQELDLSDNALGpDGCGVLESLLRSSSLQELKlnnNGLGDRGL-RLLAKGLKDLP--PALEKLV--LGRNR 148
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043829268  937 QEASGCT--SYEIPAIRNLRKLEFALGPAcGLQGLLKLVKILAAFPSLQHLDLDalsENSIGDEGAKSLSEVFPTLTSLE 1014
Cdd:cd00116    149 LEGASCEalAKALRANRDLKELNLANNGI-GDAGIRALAEGLKANCNLEVLDLN---NNGLTDEGASALAETLASLKSLE 224
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043829268 1015 TLNLSQNKITDVGAENLATALPSLSSL-KTLSLYNNNICDFGAENLAKVLPAMTSLRVLDVQYNKITGVGAQQLtDSLRK 1093
Cdd:cd00116    225 VLNLGDNNLTDAGAAALASALLSPNISlLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLL-AESLL 303
                          330
                   ....*....|....*
gi 2043829268 1094 CPHMKNLVMWNPTIP 1108
Cdd:cd00116    304 EPGNELESLWVKDDS 318
NACHT pfam05729
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in ...
397-567 4.36e-32

NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.


Pssm-ID: 428606 [Multi-domain]  Cd Length: 166  Bit Score: 122.80  E-value: 4.36e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043829268  397 VIVVLGKAGMGKSILIQKICQDWSNGE-FSQFEFVFWFDCKQLSLPEKQYSLKELLLEFFVKPQEGSKEIFEYMLQNPGK 475
Cdd:pfam05729    2 TVILQGEAGSGKTTLLQKLALLWAQGKlPQGFDFVFFLPCRELSRSGNARSLADLLFSQWPEPAAPVSEVWAVILELPER 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043829268  476 VLLIFDGFKGLHDHENFPRcsasqpekDLCSIKELLSGLIQKKVLNGCTLLFTARPK--DKLYQYMSKVDkTIEIVGFSP 553
Cdd:pfam05729   82 LLLILDGLDELVSDLGQLD--------GPCPVLTLLSSLLRKKLLPGASLLLTVRPDalRDLRRGLEEPR-YLEVRGFSE 152
                          170
                   ....*....|....
gi 2043829268  554 QQRELYITKYFEES 567
Cdd:pfam05729  153 SDRKQYVRKYFSDE 166
COG5635 COG5635
Predicted NTPase, NACHT family domain [Signal transduction mechanisms];
281-483 1.46e-04

Predicted NTPase, NACHT family domain [Signal transduction mechanisms];


Pssm-ID: 227922 [Multi-domain]  Cd Length: 824  Bit Score: 45.94  E-value: 1.46e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043829268  281 TDRLAHLEEFQEVQDSIISSEEPFKRPEQVE--TFCSSLkdYFRDTCKSVtmEREVNLDHLFIdrtLVQSQTETKTGKNS 358
Cdd:COG5635    112 TWLRLLGAQTTRIDDDPLLLQQLRCEWQESKilAQAGTL--LELLIARGV--QSQDKLIDVNI---LEEVPLASQRSKRI 184
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043829268  359 AkamekelvtcSLQEKEKTAIDRSQIFQIPQRKDLETKV-----------IVVLGKAGMGKSILIQKICQDWSNGEFSQF 427
Cdd:COG5635    185 F----------DLNTKGEKRFDEEFLLELTQSADDQDALpglealekyakLLILGAPGSGKTTFLQRLALWLAQRTLEPE 254
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2043829268  428 EFVFWFDCKQLSLP---EKQYSLKELLLEFFVKpQEGSKEI---FEYMLQNpGKVLLIFDGF 483
Cdd:COG5635    255 DVPIFLLLNAFALArkfEKQLSLIDYLAEELFS-QGIAKQLieaHQELLKT-GKLLLLLDGL 314
NLRC4_HD2 pfam17776
NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein ...
743-815 3.55e-04

NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein and NOD2 protein.


Pssm-ID: 436035  Cd Length: 122  Bit Score: 41.50  E-value: 3.55e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2043829268  743 LDLMPRFLAGL------MFLQDdpSFCSLSNEDEKQStkkqktLLKYIRRLQINTLCPERLLELLCCVYETQNNYLLQH 815
Cdd:pfam17776   52 LDLFLRFLFGLlneenqRLLEG--LLGCKLSSEIKQE------LLQWIKSLIQKELSSERFLNLFHCLYELQDESFVKE 122
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal ...
912-1087 1.39e-03

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms, RNA processing and modification];


Pssm-ID: 227563 [Multi-domain]  Cd Length: 388  Bit Score: 42.22  E-value: 1.39e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043829268  912 KAKTMKDISDLSDLVELQEKMMNCVQ----------EASGCTSYEIPAIRNLRKLEFAlgpaCGLQGLLK---------L 972
Cdd:COG5238      9 KKLKLETKEDVKGVVEELEMMDELVEvdlsgntigtEAMEELCNVIANVRNLRVVNFS----DAFTGRDKdelysnlvmL 84
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043829268  973 VKILAAFPSLQHLDLdalSENSIGDEGAKSLSEVFPTLTSLETLNLSQNKITDVGAENLATALPSLSSLKTLSLY----- 1047
Cdd:COG5238     85 LKALLKCPRLQKVDL---SDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKpklev 161
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....
gi 2043829268 1048 ----NNNICDFGAENLAKVLPAMTSLRVLDVQYNKITGVGAQQL 1087
Cdd:COG5238    162 vicgRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTML 205
LRR_6 pfam13516
Leucine Rich repeat;
1009-1032 2.71e-03

Leucine Rich repeat;


Pssm-ID: 433274 [Multi-domain]  Cd Length: 24  Bit Score: 36.05  E-value: 2.71e-03
                           10        20
                   ....*....|....*....|....
gi 2043829268 1009 TLTSLETLNLSQNKITDVGAENLA 1032
Cdd:pfam13516    1 SNTHLTTLDLSGNDIGDEGAEALA 24
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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