NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2052687849|ref|XP_041911907|]
View 

la-related protein 1B-like [Arvicola amphibius]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
DM15 super family cl02733
Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown ...
15-53 1.33e-11

Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function;


The actual alignment was detected with superfamily member smart00684:

Pssm-ID: 128927  Cd Length: 39  Bit Score: 56.23  E-value: 1.33e-11
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 2052687849   15 HFHRKMYEEFRQLAWEDAKENYRYGLECLFRFYSYGLEK 53
Cdd:smart00684   1 NFNQNMYEEFRQLCLEDRKSLGRYELNCLYRFWSYGLRK 39
 
Name Accession Description Interval E-value
DM15 smart00684
Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown ...
15-53 1.33e-11

Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function;


Pssm-ID: 128927  Cd Length: 39  Bit Score: 56.23  E-value: 1.33e-11
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 2052687849   15 HFHRKMYEEFRQLAWEDAKENYRYGLECLFRFYSYGLEK 53
Cdd:smart00684   1 NFNQNMYEEFRQLCLEDRKSLGRYELNCLYRFWSYGLRK 39
 
Name Accession Description Interval E-value
DM15 smart00684
Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown ...
15-53 1.33e-11

Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function;


Pssm-ID: 128927  Cd Length: 39  Bit Score: 56.23  E-value: 1.33e-11
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 2052687849   15 HFHRKMYEEFRQLAWEDAKENYRYGLECLFRFYSYGLEK 53
Cdd:smart00684   1 NFNQNMYEEFRQLCLEDRKSLGRYELNCLYRFWSYGLRK 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH