|
Name |
Accession |
Description |
Interval |
E-value |
| Filament |
pfam00038 |
Intermediate filament protein; |
41-316 |
2.14e-17 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 83.43 E-value: 2.14e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 41 LQGLGERVAAHVQRARALEQRHAVLRRQLDAF--QRLGELAGPEDALARHVEGNRQRARDLAAERTRLERQGAEAQRALD 118
Cdd:pfam00038 6 LQELNDRLASYIDKVRFLEQQNKLLETKISELrqKKGAEPSRLYSLYEKEIEDLRRQLDTLTVERARLQLELDNLRLAAE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 119 EFRSKYENECECQLLLKEMLERLNKEADEALLHNLRLQIEAQFLQDDISAAKDRYKKNLLEIQTYVTILQQIVQT----T 194
Cdd:pfam00038 86 DFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKNHEEEVRELQAQVSDTQVNVEMdaarK 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 195 PQASAITSGMREE-----------------------KLLTEREAAALQSQLEEGREVVSLLQAQRTELQA---QTAALEQ 248
Cdd:pfam00038 166 LDLTSALAEIRAQyeeiaaknreeaeewyqskleelQQAAARNGDALRSAKEEITELRRTIQSLEIELQSlkkQKASLER 245
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 73991107 249 SIKDAHECYDDEIQLYNEQIENLRKEIEEAERSLERSSYDCRQLVVAQQTLKNELERYHRIIENEGNR 316
Cdd:pfam00038 246 QLAETEERYELQLADYQELISELEAELQETRQEMARQLREYQELLNVKLALDIEIATYRKLLEGEECR 313
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
39-248 |
1.39e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 1.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 39 AALQGLGERVAAHVQRARALEQRHAVLRRQLDAFQ-RLGELAGPEDALARHVEGNRQRARDLAAERTRLERQGAEAQRAL 117
Cdd:COG1196 281 LELEEAQAEEYELLAELARLEQDIARLEERRRELEeRLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAEL 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 118 DEFRSKYENECECQLLLKEMLERLNKEADEALLHNLRLQIEAQFLQDDISAAKDRYKKNLLEIQTYVTILQQIVQTTPQA 197
Cdd:COG1196 361 AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE 440
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 73991107 198 SAITSGMREEKLLTEREAAALQSQLEEGREVVSLLQAQRTELQAQTAALEQ 248
Cdd:COG1196 441 EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA 491
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
39-283 |
6.38e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.18 E-value: 6.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 39 AALQGLGERVAAHVQRARALEQRHAVLRRQLDAFQ-RLGELAGPEDALARHVEGNRQRARDLAAERTRLERQGAEAQRAL 117
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEELELELEEAQaEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 118 DEFRSKYENECECQLLLKEMLERLNKEADEALLHNLRLQIEAQFLQDDISAAKDRYKKNLLEIQTYVTILQQIVQTTPQA 197
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEAL 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 198 SAITSGMREEKLLTEREAAALQSQLEEGREVVSLLQAQRTELQAQTAALEQSIKDAHEcyddEIQLYNEQIENLRKEIEE 277
Cdd:COG1196 413 LERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE----EAALLEAALAELLEELAE 488
|
....*.
gi 73991107 278 AERSLE 283
Cdd:COG1196 489 AAARLL 494
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
47-320 |
3.03e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 3.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 47 RVAAHVQRARALEQRHAVLRRQLDAFQRLGELAgpeDALARHVEGNRQRARdlaAERTRLERQGAEAQRALDEFRSKYEN 126
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEEL---EAELAELEAELEELR---LELEELELELEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 127 ECECQLLLKEMLERLNKEADEALLHNLRLQIEAQFLQDDISAAKDRYKKNLLEIQTYVTILQQIVQTTPQASAITSGMRE 206
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 207 EKLLTEREAAALQSQLEEGREVVSLLQAQRTELQAQTAALEQSIKDAhecyDDEIQLYNEQIENLRKEIEEAERSLERSS 286
Cdd:COG1196 380 ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEEL----EEALAELEEEEEEEEEALEEAAEEEAELE 455
|
250 260 270
....*....|....*....|....*....|....
gi 73991107 287 YDCRQLVVAQQTLKNELERYHRIIENEGNRLSSA 320
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAELLEELAEA 489
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
86-308 |
6.11e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 55.93 E-value: 6.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 86 ARHVEGNRQRARDLAAERTRLERQGAEAQRALDEFRSKYENECECQLL-----LKEMLERLNKEADEALLHNLRLQIEAQ 160
Cdd:COG4717 296 EKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLdrieeLQELLREAEELEEELQLEELEQEIAAL 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 161 FLQDDISAAKDRYKKnLLEIQTYVTILQQIVQTTPQASAITSGMREekLLTEREAAALQSQLEEGREVVSLLQAQRTELQ 240
Cdd:COG4717 376 LAEAGVEDEEELRAA-LEQAEEYQELKEELEELEEQLEELLGELEE--LLEALDEEELEEELEELEEELEELEEELEELR 452
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 73991107 241 AQTAALEQSIKDAHEcyDDEIQLYNEQIENLRKEIEEAERSLERssydcrqLVVAQQTLKNELERYHR 308
Cdd:COG4717 453 EELAELEAELEQLEE--DGELAELLQELEELKAELRELAEEWAA-------LKLALELLEEAREEYRE 511
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
44-323 |
7.41e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 7.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 44 LGERVAAHVQRARALEQRHAVLRRQLDAFQ-RLGELAGPEDALARHVEGNRQRARDLAAERTRLERQGAEAQRALDEFRS 122
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEeELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 123 KYEnececqlLLKEMLERLNKEADEALLHNLRLQIEAQFLQDDISAAKDRykknLLEIQTYVTILQQIVQTTPQASAits 202
Cdd:TIGR02168 762 EIE-------ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREA----LDELRAELTLLNEEAANLRERLE--- 827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 203 GMREEKLLTEREAAALQSQLEEGREVVSLLQAQRTELQAQTAALEQSIKDAHECYD---DEIQLYNEQIENLRKEIEEAE 279
Cdd:TIGR02168 828 SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAsleEALALLRSELEELSEELRELE 907
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 73991107 280 RSLERSSYDCRQLVVAQQTLKNELERyhriIENEGNRLSSAFIE 323
Cdd:TIGR02168 908 SKRSELRRELEELREKLAQLELRLEG----LEVRIDNLQERLSE 947
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
39-323 |
1.04e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.31 E-value: 1.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 39 AALQGLGERVAAHVQRARALEQRHAVLRRQLDAFQRLGELAGPEDALArhvegnrqrarDLAAERTRLERQGAEAQRALD 118
Cdd:COG4913 617 AELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVA-----------SAEREIAELEAELERLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 119 EFRSkyenececqllLKEMLERLNKEADEallhnLRLQIEAqfLQDDISAAKDRYKKNLLEIQTYVTILQQIVQTTPQAs 198
Cdd:COG4913 686 DLAA-----------LEEQLEELEAELEE-----LEEELDE--LKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLE- 746
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 199 aitsgmrEEKLLTEREAAALQSQLEegREVVSLLQAQRTELQAQTAALEQSIKDAHECYDDEiqlYNEQIENLRKEIEEA 278
Cdd:COG4913 747 -------LRALLEERFAAALGDAVE--RELRENLEERIDALRARLNRAEEELERAMRAFNRE---WPAETADLDADLESL 814
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 73991107 279 ERSLERssydCRQLVvaqqtlKNELERYHRIIENEGNRLSSAFIE 323
Cdd:COG4913 815 PEYLAL----LDRLE------EDGLPEYEERFKELLNENSIEFVA 849
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
82-320 |
3.71e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.40 E-value: 3.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 82 EDALAR--HVEGNRQRARDLAAE-RTRLERQGAEAQRALdefrsKYENececqllLKEMLERLnkEADEALLHNLRLQIE 158
Cdd:COG1196 175 EEAERKleATEENLERLEDILGElERQLEPLERQAEKAE-----RYRE-------LKEELKEL--EAELLLLKLRELEAE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 159 AQFLQDDISAAKDRYKKNLLEIQTYVTILQQIVQTTPQASAITSGMREEKLLTEREAAALQSQLEEGREVVSLLQAQRTE 238
Cdd:COG1196 241 LEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 239 LQAQTAALEQSIKDAHEcyddEIQLYNEQIENLRKEIEEAERSLERSSydcRQLVVAQQTLKNELERYHRIIENEGNRLS 318
Cdd:COG1196 321 LEEELAELEEELEELEE----ELEELEEELEEAEEELEEAEAELAEAE---EALLEAEAELAEAEEELEELAEELLEALR 393
|
..
gi 73991107 319 SA 320
Cdd:COG1196 394 AA 395
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
17-278 |
4.24e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.38 E-value: 4.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 17 RAEEAPRAEPDSLVE------GRAAPSLAALqgLGERVAAH-VQRARALEQ-RHAVLR-RQLDAFQRLGELAGPEDALAR 87
Cdd:COG4913 524 PDPERPRLDPDSLAGkldfkpHPFRAWLEAE--LGRRFDYVcVDSPEELRRhPRAITRaGQVKGNGTRHEKDDRRRIRSR 601
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 88 HVEG--NRQRARDLAAERTRLERQGAEAQRALDEFRSKYENECECQLLLKEMLERLNKEADEALLHNLRLQIEAQFLQ-- 163
Cdd:COG4913 602 YVLGfdNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERld 681
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 164 ---DDISAAKDRYKKNLLEIQTYVtilQQIVQTTPQASAITSGMREekllTEREAAALQSQLEEGREVVSLLQAQRTELQ 240
Cdd:COG4913 682 assDDLAALEEQLEELEAELEELE---EELDELKGEIGRLEKELEQ----AEEELDELQDRLEAAEDLARLELRALLEER 754
|
250 260 270
....*....|....*....|....*....|....*...
gi 73991107 241 AQTAALEQSIKDAHECYDDEIQLYNEQIENLRKEIEEA 278
Cdd:COG4913 755 FAAALGDAVERELRENLEERIDALRARLNRAEEELERA 792
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
27-284 |
7.06e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 7.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 27 DSLVEGRAApSLAALQGLGERVAAHVQRARALEQRHAVLR--------RQLDAFQRLGELAGPEDALARHVEGNRQRARD 98
Cdd:TIGR02168 235 EELREELEE-LQEELKEAEEELEELTAELQELEEKLEELRlevseleeEIEELQKELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 99 LAAERTRLERQGAEAQRALDEFR-------SKYENECECQLLLKEMLERLNKEADEALLHNLRLQIEAQFLQDDISAAKD 171
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAeelaeleEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLEL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 172 RYKKNLLEIQTYVTILQQIVQTTPQASAITSGMREEklLTEREAAALQSQLEEGREVVSLLQAQRTELQAQTAALEQSIK 251
Cdd:TIGR02168 394 QIASLNNEIERLEARLERLEDRRERLQQEIEELLKK--LEEAELKELQAELEELEEELEELQEELERLEEALEELREELE 471
|
250 260 270
....*....|....*....|....*....|...
gi 73991107 252 DAHEcyddEIQLYNEQIENLRKEIEEAERSLER 284
Cdd:TIGR02168 472 EAEQ----ALDAAERELAQLQARLDSLERLQEN 500
|
|
| ClyA_Cry6Aa-like |
cd22656 |
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes ... |
134-324 |
3.38e-06 |
|
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes pesticidal Cry6Aa toxin from Bacillus thuringiensis, one of the many parasporal crystal (Cry) toxins produced during the sporulation phase of growth. Many of these proteins are toxic to numerous insect species and have been effectively used as proteinaceous insecticides to directly kill insect pests; some have been used to control insect growth on transgenic agricultural plants. Cry6Aa exists as a protoxin, which is activated by cleavage using trypsin. Structure studies for Cry6Aa support a mechanism of action by pore formation, similar to cytolysin A (ClyA)-type alpha pore-forming toxins (alpha-PFTs) such as HblB, and bioassay and mutation studies show that Cry6Aa is an active pore-forming toxin. Cry6Aa shows atypical features compared to other members of alpha-PFTs, including internal repeat sequences and small loop regions within major alpha helices.
Pssm-ID: 439154 [Multi-domain] Cd Length: 309 Bit Score: 49.29 E-value: 3.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 134 LKEMLERLNKEADEallhnlrLQIEAQFLQDDISAAKDRYKKNLLEIQTYVTILQQIVQTtpqasaitsgmrEEKLLTER 213
Cdd:cd22656 119 IKALLDDLLKEAKK-------YQDKAAKVVDKLTDFENQTEKDQTALETLEKALKDLLTD------------EGGAIARK 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 214 EAAALQSQLEEGR-EVVSLLQAQRTELQAQTAALEQSIKDAHECYDDeIQLYNEQIENLRKEIEEAERSLERssydcrqL 292
Cdd:cd22656 180 EIKDLQKELEKLNeEYAAKLKAKIDELKALIADDEAKLAAALRLIAD-LTAADTDLDNLLALIGPAIPALEK-------L 251
|
170 180 190
....*....|....*....|....*....|..
gi 73991107 293 VVAQQTLKNELERYHRIIENEGNRLSSAFIET 324
Cdd:cd22656 252 QGAWQAIATDLDSLKDLLEDDISKIPAAILAK 283
|
|
| PTZ00449 |
PTZ00449 |
104 kDa microneme/rhoptry antigen; Provisional |
497-612 |
5.49e-06 |
|
104 kDa microneme/rhoptry antigen; Provisional
Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 49.69 E-value: 5.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 497 EEDSLHRDSPAEpSPEQPGPPlENGQEDLQGKEGGH-PSNQHTADKENEINAEGLKGP-GEKQDDQKEDEESRgpCPVVT 574
Cdd:PTZ00449 501 EEDSDKHDEPPE-GPEASGLP-PKAPGDKEGEEGEHeDSKESDEPKEGGKPGETKEGEvGKKPGPAKEHKPSK--IPTLS 576
|
90 100 110
....*....|....*....|....*....|....*...
gi 73991107 575 PGPEGPSTPQSQRSGVSPSGSEgRGVRSSSPQERSPPR 612
Cdd:PTZ00449 577 KKPEFPKDPKHPKDPEEPKKPK-RPRSAQRPTRPKSPK 613
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
53-242 |
6.74e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 6.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 53 QRARALEQRHAVLRRQLDAFQRLGELAGPE------DALARHVEGNRQRARDLAAERTRLERQGAEAQRALDEFRSKYEN 126
Cdd:COG4913 255 EPIRELAERYAAARERLAELEYLRAALRLWfaqrrlELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRG 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 127 ECECQL-LLKEMLERLNKEADEALlhNLRLQIEAQFLQDDISAAKDRykknlleiQTYVTILQQIVQTTPQASAITSGMR 205
Cdd:COG4913 335 NGGDRLeQLEREIERLERELEERE--RRRARLEALLAALGLPLPASA--------EEFAALRAEAAALLEALEEELEALE 404
|
170 180 190
....*....|....*....|....*....|....*..
gi 73991107 206 EEKLLTEREAAALQSQLEEgrevvslLQAQRTELQAQ 242
Cdd:COG4913 405 EALAEAEAALRDLRRELRE-------LEAEIASLERR 434
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
82-305 |
7.06e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.24 E-value: 7.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 82 EDALARHVEGNRQRARDLAAERTRLERQGAEAQRALDEFRSKYEnececqlllkemLERLNKEADEAL--LHNLRLQIEA 159
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNG------------LVDLSEEAKLLLqqLSELESQLAE 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 160 qfLQDDISAAKDRYKknllEIQTYVTILQQIVQTTPQASAITSgMREEKLLTEREAAALQSQLEEGREVVSLLQAQRTEL 239
Cdd:COG3206 231 --ARAELAEAEARLA----ALRAQLGSGPDALPELLQSPVIQQ-LRAQLAELEAELAELSARYTPNHPDVIALRAQIAAL 303
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 73991107 240 QAQtaaLEQSIKDAHECYDDEIQLYNEQIENLRKEIEEAERSLerssydcRQLVVAQQTLkNELER 305
Cdd:COG3206 304 RAQ---LQQEAQRILASLEAELEALQAREASLQAQLAQLEARL-------AELPELEAEL-RRLER 358
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
48-286 |
1.35e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 1.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 48 VAAHVQRARALEQRHAVLRRQLDAFQ-RLGELAGPEDALARHVEGNRQRARDLAAERTRLERQGAEAQRALDEFRSKYEn 126
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEkELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 127 ecECQLLLKEMLERLNKEADEALLHNLRLQIEAQFLQDDISAAKDRYkknlleiQTYVTILQQIVQTTPQASAITSGMRE 206
Cdd:COG4942 94 --ELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRL-------QYLKYLAPARREQAEELRADLAELAA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 207 EKLLTEREAAALQSQLEEGREVVSLLQAQRTELQAQTAALEQSIKDahecYDDEIQLYNEQIENLRKEIEEAERSLERSS 286
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAE----LAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
46-308 |
2.95e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 2.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 46 ERVAAHVQRARALEQRHAVLRRQLDAFQRLGELAgpedalARHVEgNRQRARDLAAERTRLERQgaEAQRALDefrskye 125
Cdd:COG4913 228 DALVEHFDDLERAHEALEDAREQIELLEPIRELA------ERYAA-ARERLAELEYLRAALRLW--FAQRRLE------- 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 126 nececqlLLKEMLERLNKEADEALLHNLRLQIEAQFLQDDISAAKDRYKKNlleiqtyvtilqqivqttpqasaitSGMR 205
Cdd:COG4913 292 -------LLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGN-------------------------GGDR 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 206 EEKLltEREAAALQSQLEEgrevvslLQAQRTELQAQTAALEQSIKDAHECYDD---EIQLYNEQIENLRKEIEEAERSL 282
Cdd:COG4913 340 LEQL--EREIERLERELEE-------RERRRARLEALLAALGLPLPASAEEFAAlraEAAALLEALEEELEALEEALAEA 410
|
250 260
....*....|....*....|....*.
gi 73991107 283 ERSSYDCRQlvvAQQTLKNELERYHR 308
Cdd:COG4913 411 EAALRDLRR---ELRELEAEIASLER 433
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
12-284 |
3.43e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.24 E-value: 3.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 12 KEQYERAEEAPRAEPDSLVEGRAAPSLAALQGLGERVAAHVQRARALEQRHAVLRRQLDAFQRLGELAGPEDALARHVEG 91
Cdd:COG1196 500 EADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPL 579
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 92 NRQRARDLAAERTRLERQG------AEAQRALDEFRSKYENECECQLLLKEMLERLNKEADEALLHNLRLQIEAQFLQDD 165
Cdd:COG1196 580 DKIRARAALAAALARGAIGaavdlvASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAG 659
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 166 ISAAKDRYKKNLLEIQTYVTILQQIVQTTPQASAITSGMREEKLLTEREAAALQSQLEEGREVVSLLQAQRTELQAQTAA 245
Cdd:COG1196 660 GSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLE 739
|
250 260 270
....*....|....*....|....*....|....*....
gi 73991107 246 LEQSIKDAHECYDDEIQLYNEQIENLRKEIEEAERSLER 284
Cdd:COG1196 740 ELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
134-320 |
3.71e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 3.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 134 LKEMLERLNkEADEALLhNLRLQIEAqfLQDdISAAKDRYKKNLLEIQtyvtILQQIVQTTPQASAitsgmreeklltER 213
Cdd:COG4913 230 LVEHFDDLE-RAHEALE-DAREQIEL--LEP-IRELAERYAAARERLA----ELEYLRAALRLWFA------------QR 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 214 EAAALQSQLEEGREVVSLLQAQRTELQAQTAALEQSIKDAHECYD----DEIQLYNEQIENLRKEIEEAERSLERSSYDC 289
Cdd:COG4913 289 RLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRgnggDRLEQLEREIERLERELEERERRRARLEALL 368
|
170 180 190
....*....|....*....|....*....|.
gi 73991107 290 RQLVVAQQTLKNELERYHRIIENEGNRLSSA 320
Cdd:COG4913 369 AALGLPLPASAEEFAALRAEAAALLEALEEE 399
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
56-292 |
5.04e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.87 E-value: 5.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 56 RALEQRHAVLRRQLD---------AF--QRLGELAGP-EDALARHV----EGNRQRA-RDLAAERTRLERQGAEAQRALD 118
Cdd:COG3096 781 AAREKRLEELRAERDelaeqyakaSFdvQKLQRLHQAfSQFVGGHLavafAPDPEAElAALRQRRSELERELAQHRAQEQ 860
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 119 EFRSKYENECECQLLLKEMLERLNKEADEALLHNLR-LQIEAQFLQDDiSAAKDRYKKNLLEIQTYVTILQQivqtTPQa 197
Cdd:COG3096 861 QLRQQLDQLKEQLQLLNKLLPQANLLADETLADRLEeLREELDAAQEA-QAFIQQHGKALAQLEPLVAVLQS----DPE- 934
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 198 saitsgmreekllterEAAALQSQLEEgrevvslLQAQRTELQAQTAALEQSI-KDAHECYDDEIQLYNEQ---IENLRK 273
Cdd:COG3096 935 ----------------QFEQLQADYLQ-------AKEQQRRLKQQIFALSEVVqRRPHFSYEDAVGLLGENsdlNEKLRA 991
|
250
....*....|....*....
gi 73991107 274 EIEEAERSLERSSYDCRQL 292
Cdd:COG3096 992 RLEQAEEARREAREQLRQA 1010
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
211-299 |
9.24e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 9.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 211 TEREAAALQSQLEEGREVVSLLQAQRTELQAQTAALEQSIKDAHE---CYDDEIQLYNEQIENLRKEIEEAERSLERSSY 287
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARrirALEQELAALEAELAELEKEIAELRAELEAQKE 104
|
90
....*....|..
gi 73991107 288 DCRQLVVAQQTL 299
Cdd:COG4942 105 ELAELLRALYRL 116
|
|
| DnrI |
COG3629 |
DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain ... |
8-121 |
1.50e-04 |
|
DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain [Transcription];
Pssm-ID: 442847 [Multi-domain] Cd Length: 244 Bit Score: 43.68 E-value: 1.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 8 FQTRKEQYERAEEAPRAEPDSLVEGRAAPSLAALQGLGERVAAHVQRARALEQRHAVLRRQLDAFQRLGELAGPEDALAR 87
Cdd:COG3629 103 FERLVARARAAAGDPAAAAALLREALALWRGPPLAGLPFEPWLEAERARLEELRLAALEALAEALLALGRHAEALAELRR 182
|
90 100 110
....*....|....*....|....*....|....*...
gi 73991107 88 HVEGN--RQRARDLAAerTRLERQG--AEAQRALDEFR 121
Cdd:COG3629 183 LVAAHplRERLHRLLM--RALYRAGrrAEALAAYRRLR 218
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
39-284 |
1.82e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 1.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 39 AALQGLGERVAAHVQRARALEQRHAVLRRQLDAFQRLGElagpedALARHVEGNRQRARDLAAERTRLERQGAEAQRALD 118
Cdd:TIGR02168 803 EALDELRAELTLLNEEAANLRERLESLERRIAATERRLE------DLEEQIEELSEDIESLAAEIEELEELIEELESELE 876
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 119 EFRSKYENECECQLLLKEMLERLNKEADEALLHNLRLQIEAQFLQDDISAAKDRYKKNLLEIQTyvtILQQIvqttpqas 198
Cdd:TIGR02168 877 ALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN---LQERL-------- 945
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 199 aitsgmREEKLLTEREAAALQSQLEEGREvvsllqaqrtELQAQTAALEQSIK-------DAHEcyddEIQLYNEQIENL 271
Cdd:TIGR02168 946 ------SEEYSLTLEEAEALENKIEDDEE----------EARRRLKRLENKIKelgpvnlAAIE----EYEELKERYDFL 1005
|
250
....*....|...
gi 73991107 272 RKEIEEAERSLER 284
Cdd:TIGR02168 1006 TAQKEDLTEAKET 1018
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
65-318 |
2.08e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 2.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 65 LRRQLDAFQRL----GELAGPE------DALARHVEGNRQRA-RDLAAERTRLERQGAEAQRALDEFRSKYENececqll 133
Cdd:TIGR02168 637 LAKKLRPGYRIvtldGDLVRPGgvitggSAKTNSSILERRREiEELEEKIEELEEKIAELEKALAELRKELEE------- 709
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 134 LKEMLERLNKEADEallhnlrlqieaqfLQDDISAAKDRYKKNLLEIQTYVTILQQIvqttpqasaitsgmREEKLLTER 213
Cdd:TIGR02168 710 LEEELEQLRKELEE--------------LSRQISALRKDLARLEAEVEQLEERIAQL--------------SKELTELEA 761
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 214 EAAALQSQLEEGREVVSLLQAQRTELQAQTAALEQSIKDAHECYDDEIQLYNEQIENLRKEIEEAERSLERSSYDCRQLV 293
Cdd:TIGR02168 762 EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
250 260
....*....|....*....|....*
gi 73991107 294 VAQQTLKNELEryhRIIENEGNRLS 318
Cdd:TIGR02168 842 DLEEQIEELSE---DIESLAAEIEE 863
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
9-305 |
2.92e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.06 E-value: 2.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 9 QTRKEQYERAEEAPRAEPDSLVEGRAA-----PSLAA-LQGLGERVAAHVQRARALEQRHAVlRRQLDAFQRLGELAGPE 82
Cdd:pfam12128 318 AKDRSELEALEDQHGAFLDADIETAAAdqeqlPSWQSeLENLEERLKALTGKHQDVTAKYNR-RRSKIKEQNNRDIAGIK 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 83 DALARHVEGnrqRARDLAAERTRLERQGAEAQRALDEFRSKYENEcecQLLLKEMLERL---------------NKEADE 147
Cdd:pfam12128 397 DKLAKIREA---RDRQLAVAEDDLQALESELREQLEAGKLEFNEE---EYRLKSRLGELklrlnqatatpelllQLENFD 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 148 ALLHNLRLQIEAQF-----LQDDISAAKDRYKK----------NLLEIQTYVTILQQivQTTPQASAITSGMREEKLLTE 212
Cdd:pfam12128 471 ERIERAREEQEAANaeverLQSELRQARKRRDQasealrqasrRLEERQSALDELEL--QLFPQAGTLLHFLRKEAPDWE 548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 213 REAAALQSQLEEGR-----EVVSLLQAQRT----------------------ELQAQTAALEQSIKDAHECY---DDEIQ 262
Cdd:pfam12128 549 QSIGKVISPELLHRtdldpEVWDGSVGGELnlygvkldlkridvpewaaseeELRERLDKAEEALQSAREKQaaaEEQLV 628
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 73991107 263 LYNEQIENLRKEIEEAERSLERSSYDCRQLVVAQQTLKNELER 305
Cdd:pfam12128 629 QANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNK 671
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
211-311 |
4.66e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 43.31 E-value: 4.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 211 TEREAAALQSQLEEGREVVSLLQAQRTELQAQTAALEQSIKDAHECY------DDEIQLYNEQIENLRKEIEEAERSLER 284
Cdd:COG2433 411 EEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEErreirkDREISRLDREIERLERELEEERERIEE 490
|
90 100
....*....|....*....|....*..
gi 73991107 285 ssydcrqlvvaqqtLKNELERYHRIIE 311
Cdd:COG2433 491 --------------LKRKLERLKELWK 503
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
212-323 |
5.59e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.39 E-value: 5.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 212 EREAAALQSQLEEGREVVSLLQAQRTELQAQTAALEQSIKDAhecyDDEIQLYNEQIENLRKEIEEAERSLERSSYDCRQ 291
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEEL----ELELEEAQAEEYELLAELARLEQDIARLEERRRE 313
|
90 100 110
....*....|....*....|....*....|..
gi 73991107 292 LVVAQQTLKNELERYHRIIENEGNRLSSAFIE 323
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEE 345
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
101-277 |
6.83e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 6.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 101 AERTRLERQGAEAQRALDEFRSKYENececqllLKEMLERLNKEADEALLHNLRLQIEAQFLQDDIsaakDRYKKNLLEI 180
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELAA-------LEARLEAAKTELEDLEKEIKRLELEIEEVEARI----KKYEEQLGNV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 181 QT---YVTILQQIvqttpqasaitSGMREEKLLTEREAAALQSQLEEGREVVSLLQAQRTELQAQTAALEQSIKDAHECY 257
Cdd:COG1579 86 RNnkeYEALQKEI-----------ESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAEL 154
|
170 180
....*....|....*....|
gi 73991107 258 DDEIQLYNEQIENLRKEIEE 277
Cdd:COG1579 155 EAELEELEAEREELAAKIPP 174
|
|
| HrpB4 |
pfam09502 |
Bacterial type III secretion protein (HrpB4); This entry represents proteins encoded by genes ... |
16-117 |
7.78e-04 |
|
Bacterial type III secretion protein (HrpB4); This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Pssm-ID: 401452 Cd Length: 217 Bit Score: 41.41 E-value: 7.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 16 ERAEEAPRAEPDSL---VEGRAAPSLAALQGLGERVAA-------HVQRARALEQRHAVLRRQLD--AFQRLGELAGPE- 82
Cdd:pfam09502 41 SRGPAAARAAASRLlarASGVASPSLGAFDEPAARLAAlppdlllRVLRARALLFRRAELRRCIDreSRSRLAEWTGPAp 120
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 73991107 83 DALARHVEG------------------NRQRARDLAAERTR-LERQGAEAQRAL 117
Cdd:pfam09502 121 DDIVQDPAAtggpdiaalelgggmaplAARDAAALAWEGWRlLQREGAWPDPTL 174
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
39-255 |
1.37e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 39 AALQGLGERVAAHVQRARALEQRHAVLRRQLDAFQRlgELAgpedALARHVEGNRQRARDLAAERTRLERQGAEAQRALD 118
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALER--RIA----ALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 119 EFRSKYENececQLLLKEMLERLNKE-----ADEALLHNLRLQIEAQFLQDDISAAkDRYKKNLLEIQTYVTILQQIVQT 193
Cdd:COG4942 101 AQKEELAE----LLRALYRLGRQPPLalllsPEDFLDAVRRLQYLKYLAPARREQA-EELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 73991107 194 TPQASAITSGMRE--EKLLTEREA--AALQSQLEEGREVVSLLQAQRTELQAQTAALEQSIKDAHE 255
Cdd:COG4942 176 LEALLAELEEERAalEALKAERQKllARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
53-305 |
1.63e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 53 QRARALEQRHAV--LRRQLDA-FQRLGELAGPEDALARHVEGNRQRARDLAAERTRLERQGAEAQRALDEFRSKYENECE 129
Cdd:TIGR02169 672 EPAELQRLRERLegLKRELSSlQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 130 CQLLLKEMLERLNKEAD--EALLHNLRLQIEAqfLQDDISAAKDRYKKNLL-EIQTYVTILQQIVQTTPQasaitsgmRE 206
Cdd:TIGR02169 752 EIENVKSELKELEARIEelEEDLHKLEEALND--LEARLSHSRIPEIQAELsKLEEEVSRIEARLREIEQ--------KL 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 207 EKLLTEREaaalqsQLEEGREVvslLQAQRTELQAQTAALEQsikdahecyddeiqlyneQIENLRKEIEEAERSLERSS 286
Cdd:TIGR02169 822 NRLTLEKE------YLEKEIQE---LQEQRIDLKEQIKSIEK------------------EIENLNGKKEELEEELEELE 874
|
250
....*....|....*....
gi 73991107 287 YDCRQLVVAQQTLKNELER 305
Cdd:TIGR02169 875 AALRDLESRLGDLKKERDE 893
|
|
| PHA03381 |
PHA03381 |
tegument protein VP22; Provisional |
504-611 |
2.39e-03 |
|
tegument protein VP22; Provisional
Pssm-ID: 177618 [Multi-domain] Cd Length: 290 Bit Score: 40.38 E-value: 2.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 504 DSPAEPSPEQPGPPLENGQEDLQGKEGGHPSNQHTADKENEINAEGlkgpgekqDDQKEDEESRGPCPVVTP--GPEGPS 581
Cdd:PHA03381 30 ASPARVSFEEPADRARRGAGQARGRSQAERRFHHYDEARADYPYYT--------GSSSEDERPADPRPSRRPhaQPEASG 101
|
90 100 110
....*....|....*....|....*....|
gi 73991107 582 tPQSQRSGVSPSGSEGRGVRSSSPQERSPP 611
Cdd:PHA03381 102 -PGPARGARGPAGSRGRGRRAESPSPRDPP 130
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
11-319 |
2.45e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.26 E-value: 2.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 11 RKEQYERAEEAPRAEP-----DSLVEGRAAPSLAALQGLGERVAAHVQRARALEQRHAVLRRQLDafqrlgELAGPEDAL 85
Cdd:pfam15921 418 RRELDDRNMEVQRLEAllkamKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVE------ELTAKKMTL 491
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 86 arhvEGNRQRARDLAAERTRLERQGAEAQRALDEFRSKYEnececqLLLKEmLERLNKEADEalLHNLRLQIEAQFLQdd 165
Cdd:pfam15921 492 ----ESSERTVSDLTASLQEKERAIEATNAEITKLRSRVD------LKLQE-LQHLKNEGDH--LRNVQTECEALKLQ-- 556
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 166 iSAAKDRYkknlleIQTYVTILQQIVQTTPQASAITSGMREEKLLTEREAAALQSQLEEGREVVSLLQAQRTELQAQTAA 245
Cdd:pfam15921 557 -MAEKDKV------IEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSD 629
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 246 LE--------------QSIKDAHECYD---DEIQLYNEQIENLRKEIEEAERSLERSSydcRQLVVAQQTLKNELERYHR 308
Cdd:pfam15921 630 LElekvklvnagserlRAVKDIKQERDqllNEVKTSRNELNSLSEDYEVLKRNFRNKS---EEMETTTNKLKMQLKSAQS 706
|
330
....*....|.
gi 73991107 309 IIENEGNRLSS 319
Cdd:pfam15921 707 ELEQTRNTLKS 717
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
111-277 |
2.50e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 2.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 111 AEAQRALDEFRSKYENECECQLLLKEM---LERLNKEADEALLHNLRLQIEAQFLQDDISAAKDRYKKNLLEIQTYV-TI 186
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKrqqLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLaSL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 187 LQQIVQTTPQASAI--TSGMREEKL---------LTEREAAALQSQLEEgrevvslLQAQRTELQAQTAALEQSIKDAHE 255
Cdd:TIGR02169 250 EEELEKLTEEISELekRLEEIEQLLeelnkkikdLGEEEQLRVKEKIGE-------LEAEIASLERSIAEKERELEDAEE 322
|
170 180
....*....|....*....|....*
gi 73991107 256 ---CYDDEIQLYNEQIENLRKEIEE 277
Cdd:TIGR02169 323 rlaKLEAEIDKLLAEIEELEREIEE 347
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
11-308 |
2.54e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.09 E-value: 2.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 11 RKEQYErAEEAPRAEPDSLVEgrAAPSLAALQGLGERVAAHVQRAR--------ALEQRHAVLRRQLD---AFQRLGELA 79
Cdd:COG3096 291 RRELFG-ARRQLAEEQYRLVE--MARELEELSARESDLEQDYQAASdhlnlvqtALRQQEKIERYQEDleeLTERLEEQE 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 80 GPEDALARHVEGNRQRARDLAAERTRLERQGAEAQRALDE-----------FRSKYENECECQLL------LKEMLERLN 142
Cdd:COG3096 368 EVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVqqtraiqyqqaVQALEKARALCGLPdltpenAEDYLAAFR 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 143 KEADEAllHNLRLQIEAQFlqDDISAAKDRYKKNLleiqtyvTILQQIV------QTTPQASAITSGMREEKLLTEReAA 216
Cdd:COG3096 448 AKEQQA--TEEVLELEQKL--SVADAARRQFEKAY-------ELVCKIAgeversQAWQTARELLRRYRSQQALAQR-LQ 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 217 ALQSQLEEGREvvslLQAQRTELQAQTAALEQSIKdahECYDDEIQLYNEQIEnLRKEIEEAERSLERSSYDCRQLvvaQ 296
Cdd:COG3096 516 QLRAQLAELEQ----RLRQQQNAERLLEEFCQRIG---QQLDAAEELEELLAE-LEAQLEELEEQAAEAVEQRSEL---R 584
|
330
....*....|..
gi 73991107 297 QTLKNELERYHR 308
Cdd:COG3096 585 QQLEQLRARIKE 596
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
9-125 |
3.13e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 3.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 9 QTRKEQYERAEEAPRAEPDSLVEGRAAPSLAALQGLGERVAAHVQRARALEQRHAVLRRQLdafQRLG-ELAGPEDALAR 87
Cdd:COG4913 308 EAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALL---AALGlPLPASAEEFAA 384
|
90 100 110
....*....|....*....|....*....|....*...
gi 73991107 88 HVEGNRQRARDLAAERTRLERQGAEAQRALDEFRSKYE 125
Cdd:COG4913 385 LRAEAAALLEALEEELEALEEALAEAEAALRDLRRELR 422
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
7-248 |
4.26e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.33 E-value: 4.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 7 VFQTRKEQYERAEEApraepdsLVEGRAAPSLAAL--QGLGERVAAHV-------QRARALEQR---HAVLRRQLD-AFQ 73
Cdd:PRK04863 408 VQQTRAIQYQQAVQA-------LERAKQLCGLPDLtaDNAEDWLEEFQakeqeatEELLSLEQKlsvAQAAHSQFEqAYQ 480
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 74 RLGELAGPEDALARHVEGnRQRARDLAAERTRLERQGAeAQRALDEFRSKYENECECQLLLKEMLERLNK-EADEALLHN 152
Cdd:PRK04863 481 LVRKIAGEVSRSEAWDVA-RELLRRLREQRHLAEQLQQ-LRMRLSELEQRLRQQQRAERLLAEFCKRLGKnLDDEDELEQ 558
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 153 LRLQIEAQF--LQDDISAAKDRY---KKNLLEIQTYVTILQQIVQTTPQASAITSGMRE---EKLLT-EREAAALQSQLE 223
Cdd:PRK04863 559 LQEELEARLesLSESVSEARERRmalRQQLEQLQARIQRLAARAPAWLAAQDALARLREqsgEEFEDsQDVTEYMQQLLE 638
|
250 260
....*....|....*....|....*...
gi 73991107 224 EGRE---VVSLLQAQRTELQAQTAALEQ 248
Cdd:PRK04863 639 REREltvERDELAARKQALDEEIERLSQ 666
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
14-312 |
4.60e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 40.31 E-value: 4.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 14 QYERAEEAPRAEPDSLVEGRAAPSLAALQGLGERVAAHVQRARALEQRHAVLRRQLDAFQRLGELAGPEDALARHVEGNR 93
Cdd:COG1196 564 EYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLA 643
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 94 QRARDLAAERTRLERQGAEAQRALDEFRSkyenececQLLLKEMLERLNKEADEALLHNLRLQIEAQFLQDDISAAKdry 173
Cdd:COG1196 644 GRLREVTLEGEGGSAGGSLTGGSRRELLA--------ALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEA--- 712
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 174 kknlleiqtyvtilqqivqttpqasaitsgmREEKLLTEREAAALQSQLEEGREVVSLLQAQRTELQAQTAALEQSIKDA 253
Cdd:COG1196 713 -------------------------------EEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD 761
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 73991107 254 HECYDDEIQLYNEQIE-----NLRKeIEEAERSLERSSYdcrqLVVAQQTLKNELERYHRIIEN 312
Cdd:COG1196 762 LEELERELERLEREIEalgpvNLLA-IEEYEELEERYDF----LSEQREDLEEARETLEEAIEE 820
|
|
| KpsE |
COG3524 |
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis]; |
66-282 |
5.25e-03 |
|
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442746 [Multi-domain] Cd Length: 370 Bit Score: 39.45 E-value: 5.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 66 RRQLDAFQRLGELAGPEDALA---RHVEGNRqrarDLAAERTRLERQGAEAQRAldefrskyenececqlllKEMLERLN 142
Cdd:COG3524 103 RPGIDPLSRLDPDASIEDLYKyyrRRVKVEY----DSTSGIITLEVRAFDPEDA------------------QAIAEALL 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 143 KEAdEALLHNL--RLQIEA-QFLQDDISAAKDRykknLLEIQTYVTILQQivqttpqasaitsgmrEEKLL-TEREAAAL 218
Cdd:COG3524 161 AES-EELVNQLseRAREDAvRFAEEEVERAEER----LRDAREALLAFRN----------------RNGILdPEATAEAL 219
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 73991107 219 QSQleegrevVSLLQAQRTELQAQTAALEQSIKDAHEcyddEIQLYNEQIENLRKEIEEAERSL 282
Cdd:COG3524 220 LQL-------IATLEGQLAELEAELAALRSYLSPNSP----QVRQLRRRIAALEKQIAAERARL 272
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
100-312 |
5.62e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.04 E-value: 5.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 100 AAERTRLERQGAEAQRALDEFRskyENECECQLLLKEM---LERLNKEADEAllhnlrlqIEAQFLQDDISAakdrykkn 176
Cdd:TIGR02168 164 AAGISKYKERRKETERKLERTR---ENLDRLEDILNELerqLKSLERQAEKA--------ERYKELKAELRE-------- 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 177 lLEIQTYVTILQQIVQTTPQASAITSGMREEKLLTEREAAALQSQLEEGR----EVVSLLQAQRTELQAQTAALE----- 247
Cdd:TIGR02168 225 -LELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRlevsELEEEIEELQKELYALANEISrleqq 303
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 73991107 248 -QSIKDAHECYDDEIQLYNEQIENLRKEIEEAERSLERSSYDCRQLVVAQQTLKNELERYHRIIEN 312
Cdd:TIGR02168 304 kQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE 369
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
50-318 |
5.66e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 39.89 E-value: 5.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 50 AHVQRARALEQRHAVlRRQLDAFQRlGELAGPEDALARHV-----------EGNRQRARDLAAERTRLERQGAEAQRALD 118
Cdd:PRK11281 27 ARAASNGDLPTEADV-QAQLDALNK-QKLLEAEDKLVQQDleqtlalldkiDRQKEETEQLKQQLAQAPAKLRQAQAELE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 119 EFrSKYENECECQLLLKEMLERLNKEADEallhnlrLQIEAQFLQDDISAA-------KDRYKKNLLEIQTYVTILQQIV 191
Cdd:PRK11281 105 AL-KDDNDEETRETLSTLSLRQLESRLAQ-------TLDQLQNAQNDLAEYnsqlvslQTQPERAQAALYANSQRLQQIR 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 192 Q---TTPQASAITSGMREEKLLTEREAAALQSQLE----EGREVV-SLLQAQRTELQAQTAALEQsikdahecyddEIQL 263
Cdd:PRK11281 177 NllkGGKVGGKALRPSQRVLLQAEQALLNAQNDLQrkslEGNTQLqDLLQKQRDYLTARIQRLEH-----------QLQL 245
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 73991107 264 YNEQIENLR-----KEIEEAERSLERSSYDCRQLVVAQQTLKNELERYhrIIE--NEGNRLS 318
Cdd:PRK11281 246 LQEAINSKRltlseKTVQEAQSQDEAARIQANPLVAQELEINLQLSQR--LLKatEKLNTLT 305
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
93-306 |
6.31e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 39.64 E-value: 6.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 93 RQRARDlaaERTRLERQGAEAQRALDEFRSKYENECEcqlllKEMLERLN------KEADEALLHNLRLQIEAQFLQDDI 166
Cdd:PRK02224 168 RERASD---ARLGVERVLSDQRGSLDQLKAQIEEKEE-----KDLHERLNgleselAELDEEIERYEEQREQARETRDEA 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 167 SAAKDRYKKNLLEIQTYvtilqqivqttpqASAItSGMREEKLLTEREAAALQSQLEEGREVVSLLQAQRTELQAqTAAL 246
Cdd:PRK02224 240 DEVLEEHEERREELETL-------------EAEI-EDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLA-EAGL 304
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 247 EqsikdahecyDDEIQLYNEQIENLRKEIEEAERSLErssyDCRqlvVAQQTLKNELERY 306
Cdd:PRK02224 305 D----------DADAEAVEARREELEDRDEELRDRLE----ECR---VAAQAHNEEAESL 347
|
|
| FUSC |
pfam04632 |
Fusaric acid resistance protein family; This family includes a conserved region found in two ... |
32-141 |
6.42e-03 |
|
Fusaric acid resistance protein family; This family includes a conserved region found in two proteins associated with fusaric acid resistance, from Burkholderia cepacia and Klebsiella oxytoca. These proteins are likely to be membrane transporter proteins.
Pssm-ID: 428044 [Multi-domain] Cd Length: 655 Bit Score: 39.57 E-value: 6.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 32 GRAAPSLAALQGLGERVAAHVQRARALEQRHAVLRRQLDAFQRlgELAGPEDALARHVEgnRQRARDLAAERTRLERQGA 111
Cdd:pfam04632 211 PRGRARARALRRLLARMLALLPRLRSLARLLARLRTEGAGTVP--ELAALLDELAAWEA--ALAAEALQAALAALRARLR 286
|
90 100 110
....*....|....*....|....*....|
gi 73991107 112 EAQRALDEFRSkyeNECECQLLLKEMLERL 141
Cdd:pfam04632 287 ALRPALPLDFD---TAAELLARLADLLAEL 313
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
65-315 |
7.37e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 39.56 E-value: 7.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 65 LRRQLDAFQRLGELAGPEDALARHVEGNRQ-RARDLAAERTRLERQGAEAQRALDEFRSKYEnececqlllkEMLERLNK 143
Cdd:COG5185 235 LKGFQDPESELEDLAQTSDKLEKLVEQNTDlRLEKLGENAESSKRLNENANNLIKQFENTKE----------KIAEYTKS 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 144 EADEALLHNLRLQIEAQFLQDDISAAKDRYKKNLLEIQtyvtilQQIVQTTPQASAITSGMREEKLLTEREAAALQSQlE 223
Cdd:COG5185 305 IDIKKATESLEEQLAAAEAEQELEESKRETETGIQNLT------AEIEQGQESLTENLEAIKEEIENIVGEVELSKSS-E 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 224 EGREVVSLLQAQRTELQAQTAALEQSIKDAHECYDDEIQLYNEQIENLRKEIEEAERSLERSSydcRQLvvaqQTLKNEL 303
Cdd:COG5185 378 ELDSFKDTIESTKESLDEIPQNQRGYAQEILATLEDTLKAADRQIEELQRQIEQATSSNEEVS---KLL----NELISEL 450
|
250
....*....|..
gi 73991107 304 ERYHRIIENEGN 315
Cdd:COG5185 451 NKVMREADEESQ 462
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
27-248 |
7.50e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 39.61 E-value: 7.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 27 DSLVEGRAAPSLAALQGLGERVAAHVQRARALEQRhavlrrqLDAF-QRLGELAGPEDALArhvegNRQRARDLAAERTR 105
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAA-------LEEFrQKNGLVDLSEEAKL-----LLQQLSELESQLAE 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 106 LERQGAEAQRALDEFRSKyenececqllLKEMLERLNKEADEALLHNLRLQIEAqfLQDDISAAKDRYKKNLLEIQTyvt 185
Cdd:COG3206 231 ARAELAEAEARLAALRAQ----------LGSGPDALPELLQSPVIQQLRAQLAE--LEAELAELSARYTPNHPDVIA--- 295
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 186 ILQQIVQTTPQ----ASAITSGMREEKLLTEREAAALQSQLEEGREVVSLL---QAQRTELQAQTAALEQ 248
Cdd:COG3206 296 LRAQIAALRAQlqqeAQRILASLEAELEALQAREASLQAQLAQLEARLAELpelEAELRRLEREVEVARE 365
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
9-303 |
8.60e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 39.39 E-value: 8.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 9 QTRKEQYERAEEAPRAEPDSLVEGRAApslaalqgLGERVAAHVQRARALEQRHAVLRRQLDAFQrlGELAGPEDALARh 88
Cdd:pfam01576 649 LEAKEELERTNKQLRAEMEDLVSSKDD--------VGKNVHELERSKRALEQQVEEMKTQLEELE--DELQATEDAKLR- 717
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 89 VEGNRQRA-----RDLAAErtrlERQGAEAQRALDEFRSKYENEcecqlllkemLERLNKEADEALLHNLRLQIEAQFLQ 163
Cdd:pfam01576 718 LEVNMQALkaqfeRDLQAR----DEQGEEKRRQLVKQVRELEAE----------LEDERKQRAQAVAAKKKLELDLKELE 783
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 164 DDISAA---KDRYKKNLLEIQTYVTILQQIVQTTPQA--SAITSGMREEKLLTEREAAALQSQ--LEEGREVVSLLQAQR 236
Cdd:pfam01576 784 AQIDAAnkgREEAVKQLKKLQAQMKDLQRELEEARASrdEILAQSKESEKKLKNLEAELLQLQedLAASERARRQAQQER 863
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 73991107 237 TELQAQTAAleqSIKDAHECYDDEIQLyNEQIENLRKEIEEAERSLERSSYDCRQLVVAQQTLKNEL 303
Cdd:pfam01576 864 DELADEIAS---GASGKSALQDEKRRL-EARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTEL 926
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
212-330 |
9.39e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.13 E-value: 9.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73991107 212 EREAAALQSQLEEGREVVSLLQAQRTELQAQTAALEQSIKDAHECYD---------------DEIQLYNEQIENLRKEIE 276
Cdd:COG4913 616 EAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDvasaereiaeleaelERLDASSDDLAALEEQLE 695
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 73991107 277 EAERSLERSSYDCRQLVVAQQTLKNELERYHRIIENEGNRLSSAFIETPVTLFT 330
Cdd:COG4913 696 ELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA 749
|
|
| |
