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Conserved domains on  [gi|295065679|ref|YP_003587621|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Oreochromis sp. 'red tilapia']

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009580)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-324 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177192  Cd Length: 324  Bit Score: 610.84  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679   1 MLSTLITSILNPLILIVFVLLAVALLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGLKLFMKEPVRPSTSSPVLFLFT 80
Cdd:MTH00134   1 MLSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLAT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679  81 PMLALTLALTLWTPMPLPFPMADLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNAI 160
Cdd:MTH00134  81 PMLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVI 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 161 IFTGGFTLQTFSVAQESIWLIFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240
Cdd:MTH00134 161 IFTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 241 NTLSATLFLGASILHSTPEVTTTNLMIKATLLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLSLPIALTGL 320
Cdd:MTH00134 241 NTLSAILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGL 320


                 ....
gi 295065679 321 PPQL 324
Cdd:MTH00134 321 PPQL 324
 
Name Accession Description Interval E-value
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-324 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 610.84  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679   1 MLSTLITSILNPLILIVFVLLAVALLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGLKLFMKEPVRPSTSSPVLFLFT 80
Cdd:MTH00134   1 MLSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLAT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679  81 PMLALTLALTLWTPMPLPFPMADLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNAI 160
Cdd:MTH00134  81 PMLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVI 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 161 IFTGGFTLQTFSVAQESIWLIFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240
Cdd:MTH00134 161 IFTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 241 NTLSATLFLGASILHSTPEVTTTNLMIKATLLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLSLPIALTGL 320
Cdd:MTH00134 241 NTLSAILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGL 320


                 ....
gi 295065679 321 PPQL 324
Cdd:MTH00134 321 PPQL 324
NADHdh pfam00146
NADH dehydrogenase;
13-309 1.73e-114

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 333.29  E-value: 1.73e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679   13 LILIVFVLLAVALLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGLKLFMKEPVRPSTSSPVLFLFTPMLALTLALTLW 92
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679   93 TPMPL--PFPMADLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNAIIFTGGFTLQT 170
Cdd:pfam00146  83 AVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679  171 FSVAQESIWLIFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSATLFLG 250
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 295065679  251 AsILHSTPEVTTTNLMIKATLLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIW 309
Cdd:pfam00146 243 G-WLGPFPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 4-309 5.76e-108

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 317.46  E-value: 5.76e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679   4 TLITSILNPLILIVFVLLAVALLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGLKLFMKEPVRPSTSSPVLFLFTPML 83
Cdd:COG1005    7 PLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPIL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679  84 ALTLALTLWTPMPL--PFPMADLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNAII 161
Cdd:COG1005   87 AFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVL 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 162 FTGGFTLQTFSVAQES-IWLIFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240
Cdd:COG1005  167 LAGSLNLSEIVEAQAGgLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLV 246

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 295065679 241 NTLSATLFLG-----ASILHSTPEVTTTNLMIKATLLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIW 309
Cdd:COG1005  247 SALATTLFLGgwlgpFPILPLGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVL 320
 
Name Accession Description Interval E-value
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-324 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 610.84  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679   1 MLSTLITSILNPLILIVFVLLAVALLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGLKLFMKEPVRPSTSSPVLFLFT 80
Cdd:MTH00134   1 MLSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLAT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679  81 PMLALTLALTLWTPMPLPFPMADLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNAI 160
Cdd:MTH00134  81 PMLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVI 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 161 IFTGGFTLQTFSVAQESIWLIFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240
Cdd:MTH00134 161 IFTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 241 NTLSATLFLGASILHSTPEVTTTNLMIKATLLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLSLPIALTGL 320
Cdd:MTH00134 241 NTLSAILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGL 320


                 ....
gi 295065679 321 PPQL 324
Cdd:MTH00134 321 PPQL 324
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 2-323 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 545.76  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679   2 LSTLITSILNPLILIVFVLLAVALLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGLKLFMKEPVRPSTSSPVLFLFTP 81
Cdd:MTH00071   1 MMTLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679  82 MLALTLALTLWTPMPLPFPMADLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNAII 161
Cdd:MTH00071  81 TMALTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 162 FTGGFTLQTFSVAQESIWLIFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMN 241
Cdd:MTH00071 161 LTGGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMN 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 242 TLSATLFLGASILHSTPEVTTTNLMIKATLLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLSLPIALTGLP 321
Cdd:MTH00071 241 TLSTILFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIP 320


                 ..
gi 295065679 322 PQ 323
Cdd:MTH00071 321 PM 322
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 3-324 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 533.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679   3 STLITSILNPLILIVFVLLAVALLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGLKLFMKEPVRPSTSSPVLFLFTPM 82
Cdd:MTH00111   2 PTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPI 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679  83 LALTLALTLWTPMPLPFPMADLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNAIIF 162
Cdd:MTH00111  82 LALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 163 TGGFTLQTFSVAQESIWLIFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNT 242
Cdd:MTH00111 162 SGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNT 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 243 LSATLFLGASILHSTPEVTTTNLMIKATLLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLSLPIALTGLPP 322
Cdd:MTH00111 242 LTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPP 321


                 ..
gi 295065679 323 QL 324
Cdd:MTH00111 322 QL 323
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 9-324 1.57e-171

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 478.35  E-value: 1.57e-171
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679   9 ILNPLILIVFVLLAVALLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGLKLFMKEPVRPSTSSPVLFLFTPMLALTLA 88
Cdd:MTH00104   3 MINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLA 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679  89 LTLWTPMPLPFPMADLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNAIIFTGGFTL 168
Cdd:MTH00104  83 LTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTL 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 169 QTFSVAQESIWLIFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSATLF 248
Cdd:MTH00104 163 STLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTILF 242

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 295065679 249 LGASILHSTPEVTTTNLMIKATLLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLSLPIALTGLPPQL 324
Cdd:MTH00104 243 LGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 5-322 1.64e-152

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 430.10  E-value: 1.64e-152
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679   5 LITSILNPLILIVFVLLAVALLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGLKLFMKEPVRPSTSSPVLFLFTPMLA 84
Cdd:MTH00218   1 MLLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679  85 LTLALTLWTPMPLPFPMADLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNAIIFTG 164
Cdd:MTH00218  81 LTLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 165 GFTLQTFSVAQESIWLIFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLS 244
Cdd:MTH00218 161 GFSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLS 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 295065679 245 ATLFLGASIlhstpevTTTNLMIKATLLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLSLPIALTGLPP 322
Cdd:MTH00218 241 VILFLGTSL-------TTINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 4-322 7.88e-147

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 415.91  E-value: 7.88e-147
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679   4 TLITSILNPLILIVFVLLAVALLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGLKLFMKEPVRPSTSSPVLFLFTPML 83
Cdd:MTH00040   2 SVILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679  84 ALTLALTLWTPMPLPFPMADLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNAIIFT 163
Cdd:MTH00040  82 FLFLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFS 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 164 GGFTLQTFSVAQESIWLIFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTL 243
Cdd:MTH00040 162 GSFSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLL 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 244 SATLFLGA-SILHSTPEVTTTNLMIKATLLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLSLPIALTGLPP 322
Cdd:MTH00040 242 SVILFLGGgSPFNEIFPINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILPP 321
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 5-319 2.25e-119

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 345.96  E-value: 2.25e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679   5 LITSILNPLILIVFVLLAVALLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGLKLFMKEPVRPSTSSPVLFLFTPMLA 84
Cdd:MTH00195   1 WMISVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679  85 LTLALTLWTPMPLPFPMADLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNAIIFTG 164
Cdd:MTH00195  81 LALALILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 165 GFTLQTFSVAQESIWLIFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLS 244
Cdd:MTH00195 161 SFDFTIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLT 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 295065679 245 ATLFLGASilhstpevTTTNLMIKATLLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLSLPIALTG 319
Cdd:MTH00195 241 TILFLGGG--------GTIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
NADHdh pfam00146
NADH dehydrogenase;
13-309 1.73e-114

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 333.29  E-value: 1.73e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679   13 LILIVFVLLAVALLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGLKLFMKEPVRPSTSSPVLFLFTPMLALTLALTLW 92
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679   93 TPMPL--PFPMADLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNAIIFTGGFTLQT 170
Cdd:pfam00146  83 AVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679  171 FSVAQESIWLIFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSATLFLG 250
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 295065679  251 AsILHSTPEVTTTNLMIKATLLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIW 309
Cdd:pfam00146 243 G-WLGPFPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 30-306 2.73e-113

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 330.29  E-value: 2.73e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679  30 ERKVLGYMQLRKGPNVVGPYGLLQPIADGLKLFMKEPVRPSTSSPVLFLFTPMLALTLALTLWTPMPLPFPMADLNLGIL 109
Cdd:MTH00143  25 ERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYPSYFSSSYFGWGLL 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 110 FILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNAIIFTGGFTLQTFSVAQESIWLIFPAWPLAA 189
Cdd:MTH00143 105 FFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEISESQFSVWLGFLMFPVFL 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 190 MWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSATLFLGASILHSTpeVTTTNLMIKA 269
Cdd:MTH00143 185 MWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLFFGGSSVLFL--LGGVVFMFKV 262

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 295065679 270 TLLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLAL 306
Cdd:MTH00143 263 LFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSI 299
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 5-315 3.33e-113

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 330.19  E-value: 3.33e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679   5 LITSILNPLILIVFVLLAVALLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGLKLFMKEPVRPSTSSPVLFLFTPMLA 84
Cdd:MTH00193   1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679  85 LTLALTLWTPMPLPFPMADLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNAIIFTG 164
Cdd:MTH00193  81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 165 GFTLQTFSVAQESIWLIFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLS 244
Cdd:MTH00193 161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 295065679 245 ATLFLGASILhstpevtTTNLMIKATLLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLSLPI 315
Cdd:MTH00193 241 VLMFLGGDLL-------SLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKI 304
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 4-309 5.76e-108

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 317.46  E-value: 5.76e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679   4 TLITSILNPLILIVFVLLAVALLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGLKLFMKEPVRPSTSSPVLFLFTPML 83
Cdd:COG1005    7 PLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPIL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679  84 ALTLALTLWTPMPL--PFPMADLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNAII 161
Cdd:COG1005   87 AFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVL 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 162 FTGGFTLQTFSVAQES-IWLIFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240
Cdd:COG1005  167 LAGSLNLSEIVEAQAGgLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLV 246

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 295065679 241 NTLSATLFLG-----ASILHSTPEVTTTNLMIKATLLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIW 309
Cdd:COG1005  247 SALATTLFLGgwlgpFPILPLGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVL 320
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 6-313 1.41e-107

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 315.82  E-value: 1.41e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679   6 ITSILNPLILIVFVLLAVALLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGLKLFMKEPVRPSTSSPVLFLFTPMLAL 85
Cdd:MTH00225   1 MSFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679  86 TLALTLWTPMPLPFPMADLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNAIIFTGG 165
Cdd:MTH00225  81 ILSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 166 FTLQTFSVAQESIWLIFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSA 245
Cdd:MTH00225 161 YNLFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTS 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 295065679 246 TLFLGASILhstpeVTTTNLMIKATLLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLSL 313
Cdd:MTH00225 241 ILFFGGFFV-----TIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLII 303
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 30-322 7.20e-105

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 309.74  E-value: 7.20e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679  30 ERKVLGYMQLRKGPNVVGPYGLLQPIADGLKLFMKEPVRPSTSSPVLFLFTPMLALTLALTLWTPMPL--PFPMADLNLG 107
Cdd:MTH00054  26 ERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAFIAWGVIPYgeGVVLSDLGIG 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 108 ILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNAIIFTGGFTLQTFSVAQESIWLIFPAWPL 187
Cdd:MTH00054 106 ILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLNLTEIVLAQKNIWFIFPLFPA 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 188 AAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSATLFLGASILHSTPEVTTTNLM- 266
Cdd:MTH00054 186 AIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVILFLGGWLVISGPTSYFSNFVw 265

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 295065679 267 --IKATLLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLSLPIALTGLPP 322
Cdd:MTH00054 266 fgIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPP 323
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 1-322 1.97e-104

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 308.59  E-value: 1.97e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679   1 MLSTLITSILNPLILIVFVLLAVALLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGLKLFMKEPVRPSTSSPVLFLFT 80
Cdd:MTH00216   1 MMVFIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679  81 PMLALTLALTLWTPMPLP--FPMADLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLN 158
Cdd:MTH00216  81 PVLSFTLALIVWGVIPYErgVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIIS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 159 AIIFTGGFTLQTFSVAQES-IWLIFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANI 237
Cdd:MTH00216 161 VLLCVGSLSITEIVLAQNNgIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHI 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 238 LLMNTLSATLFLGaSILHSTPEVTTTNLM--IKATLLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLSLPI 315
Cdd:MTH00216 241 ILMSCLTTILFLG-GWLSPIKYFKGGAGWfgLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLF 319


                 ....*..
gi 295065679 316 ALTGLPP 322
Cdd:MTH00216 320 GFNGPPP 326
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
3-309 6.50e-103

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 304.42  E-value: 6.50e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679   3 STLITSILNPLILIVFVLLAVALLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGLKLFMKEPVRPSTSSPVLFLFTPM 82
Cdd:PRK06076   7 DLLLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPV 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679  83 LALTLALTLWTPMPL--PFPMADLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNAI 160
Cdd:PRK06076  87 IAFIPAFLAWAVIPFgpELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVV 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 161 IFTGGFTLQTFSVAQESIWLIFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240
Cdd:PRK06076 167 LLAGSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILV 246

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 295065679 241 NTLSATLFLG---ASILHSTPEVTTTNLMIKATLLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIW 309
Cdd:PRK06076 247 SALITTLFLGgwlPPFPLGGGIPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 2-322 7.01e-88

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 267.27  E-value: 7.01e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679   2 LSTLITSILNPLILIVFVLLAVALLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGLKLFMKEPVRPSTSSPVLFLFTP 81
Cdd:MTH00029   3 IYSYITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAP 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679  82 MLALTLALTLWT--PMPLPFPMADLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNA 159
Cdd:MTH00029  83 IISFTLAILAWAivTMDQGVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISV 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 160 IIFTGGFTLQTFSVAQESIWLIFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILL 239
Cdd:MTH00029 163 ILCVGSLNISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIIL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 240 MNTLSATLFLGA--SILHSTPEVTTTNLM--------------IKATLLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLT 303
Cdd:MTH00029 243 MSCMMTIFFLGGwlSPLDGIPTPPEAFSIfeqiasskssfwffTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLS 322

                        330
                 ....*....|....*....
gi 295065679 304 LALVIWHLSLPIALTGLPP 322
Cdd:MTH00029 323 LGLVILTAGILIGFNGVPP 341
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 6-317 3.52e-87

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 263.95  E-value: 3.52e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679   6 ITSILNPLILIVFVLLAVALLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGLKLFMKEPVRPSTSSPVLFLFTPMLAL 85
Cdd:MTH00010   3 ISFFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679  86 TLALTLWTPMPLPFPMADLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNAIIFTGG 165
Cdd:MTH00010  83 ILALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQT 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 166 FTLQTFSVAQESiWLIFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSA 245
Cdd:MTH00010 163 FSFSKIIMSQYS-WILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTS 241

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 295065679 246 TLFLGasilhSTPEVTTTNLMI--KATLLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIwhLSLPIAL 317
Cdd:MTH00010 242 VFFTS-----FIPSIFISDLMLilKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLM--ISIPIMF 308
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 13-304 2.61e-63

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 202.05  E-value: 2.61e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679  13 LILIVFVLLAVALLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGLKLFMKEPVRPSTSSPVLFLFTPMLALTLALTLW 92
Cdd:MTH00090   3 LLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEW 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679  93 TPMPLPFPMADLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNAIIFTGGFTL-QTF 171
Cdd:MTH00090  83 FVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFvSSF 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 172 SVAQESIWLIFpawplaamwYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSATLFLGA 251
Cdd:MTH00090 163 SLSLFVIYLPF---------LIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFKF 233

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 295065679 252 SILHStpevtttnlmikaTLLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTL 304
Cdd:MTH00090 234 SFLML-------------FLIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSL 273
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 30-304 3.43e-48

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 163.17  E-value: 3.43e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679  30 ERKVLGYMQLRKGPNVVGPYGLLQPIADGLKLFMKEPVRPSTSSPVLFLFTPMLALTLALTLWTPMPLPFPMADLNLGIL 109
Cdd:MTH00058  25 ERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSYYSGSYSSLSLL 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 110 FILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNAIIFTGGFTLQTFSVAQESIWLIFPawPLAA 189
Cdd:MTH00058 105 WFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYSGWLSVLLFP--LIYI 182

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 190 MWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSATLFLGASILHstpevtttnLMIKA 269
Cdd:MTH00058 183 LWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFGGGFVS---------IMLLF 253

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 295065679 270 TLLsvLFLWVRASYPRFRYDQLMHLIWKNFLPLTL 304
Cdd:MTH00058 254 HLL--FFMWARATLPRVRYDYFVNFFWEYCLVLLI 286
ndhA CHL00032
NADH dehydrogenase subunit 1
 30-304 1.35e-45

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 158.58  E-value: 1.35e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679  30 ERKVLGYMQLRKGPNVVGPYGLLQPIADGLKLFMKEPVRPSTSSPVLFLFTPMLALTLALTLWTPMPLP--FPMADLNLG 107
Cdd:CHL00032  51 EREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISILLSYLVIPFGyhLVLADLSIG 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 108 ILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNAIIFTGgfTLQTFSVAQESIWLIFPAWPL 187
Cdd:CHL00032 131 VFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSN--SLSTVDIVEAQSKYGFWGWNL 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 188 aamW---------YISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSATLFLGA---SI-- 253
Cdd:CHL00032 209 ---WrqpigfivfLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGwnlSIpy 285

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 295065679 254 --------LHSTPEVTTTNLMIKATLL-SVLFLWV----RASYPRFRYDQLMHLIWKNFLPLTL 304
Cdd:CHL00032 286 ifipelfeINKTGGVFGTTIGIFITLAkTYLFLFIsittRWTLPRLRMDQLLNLGWKFLLPISL 349
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
6-309 3.29e-31

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 118.75  E-value: 3.29e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679   6 ITSILNPLILIVFVLLAVALLTLVERKVLGYMQLRKGPnvvgpyGLLQPIADGLKLFMKEPVRPSTSSPV-----LFLFT 80
Cdd:COG0650    1 MMLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWLfraapYVALA 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679  81 PMLALTLALTLWTPMPLPFPMADLnLGILFILALSSLAvysILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNAI 160
Cdd:COG0650   75 AMLLAALLVPVLTTGPPLSFSGDL-IVLVYLLALARFF---LALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALA 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295065679 161 IFTGGFTLQTFSVAQE---SIWLIFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANI 237
Cdd:COG0650  151 LLAGSTSLSDIVAYQAahgPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKL 230

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 295065679 238 LLMNTLSATLFLGASILhSTPEVTTTNLMIKATLLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIW 309
Cdd:COG0650  231 FVLLSLFVNLFLPWGIA-LTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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