NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|299828923|ref|YP_003734754|]
View 

NADH dehydrogenase subunit 1 (mitochondrion) [Coilia reynaldi]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009580)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
1-324 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177192  Cd Length: 324  Bit Score: 618.54  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923   1 MLNTFIVHIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLAT 80
Cdd:MTH00134   1 MLSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLAT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923  81 PTLALTLALTLWAPLPMPYPVTDLNLSMLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTI 160
Cdd:MTH00134  81 PMLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVI 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 161 VFTGGFTLTMFNITQETIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFM 240
Cdd:MTH00134 161 IFTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 241 NTLSAILFMGATNLPMLPELTTINIMTKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILWHTAIPLATAGL 320
Cdd:MTH00134 241 NTLSAILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGL 320

                 ....
gi 299828923 321 PPQL 324
Cdd:MTH00134 321 PPQL 324
 
Name Accession Description Interval E-value
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
1-324 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 618.54  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923   1 MLNTFIVHIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLAT 80
Cdd:MTH00134   1 MLSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLAT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923  81 PTLALTLALTLWAPLPMPYPVTDLNLSMLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTI 160
Cdd:MTH00134  81 PMLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVI 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 161 VFTGGFTLTMFNITQETIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFM 240
Cdd:MTH00134 161 IFTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 241 NTLSAILFMGATNLPMLPELTTINIMTKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILWHTAIPLATAGL 320
Cdd:MTH00134 241 NTLSAILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGL 320

                 ....
gi 299828923 321 PPQL 324
Cdd:MTH00134 321 PPQL 324
NADHdh pfam00146
NADH dehydrogenase;
13-309 1.67e-114

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 333.29  E-value: 1.67e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923   13 LAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPTLALTLALTLW 92
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923   93 APLPM--PYPVTDLNLSMLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTIVFTGGFTLTM 170
Cdd:pfam00146  83 AVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923  171 FNITQETIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMNTLSAILFMG 250
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 299828923  251 ATNLPmLPELTTINIMTKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILW 309
Cdd:pfam00146 243 GWLGP-FPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
2-309 2.38e-105

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 310.91  E-value: 2.38e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923   2 LNTFIVHIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATP 81
Cdd:COG1005    5 LAPLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAP 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923  82 TLALTLALTLWAPLPM--PYPVTDLNLSMLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLST 159
Cdd:COG1005   85 ILAFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGV 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 160 IVFTGGFTLT-MFNITQETIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIL 238
Cdd:COG1005  165 VLLAGSLNLSeIVEAQAGGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMF 244
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 299828923 239 FMNTLSAILFMGATNLPMLPELTT-----INIMTKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILW 309
Cdd:COG1005  245 LVSALATTLFLGGWLGPFPILPLGglpgiLWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVL 320
 
Name Accession Description Interval E-value
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
1-324 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 618.54  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923   1 MLNTFIVHIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLAT 80
Cdd:MTH00134   1 MLSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLAT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923  81 PTLALTLALTLWAPLPMPYPVTDLNLSMLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTI 160
Cdd:MTH00134  81 PMLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVI 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 161 VFTGGFTLTMFNITQETIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFM 240
Cdd:MTH00134 161 IFTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 241 NTLSAILFMGATNLPMLPELTTINIMTKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILWHTAIPLATAGL 320
Cdd:MTH00134 241 NTLSAILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGL 320

                 ....
gi 299828923 321 PPQL 324
Cdd:MTH00134 321 PPQL 324
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
2-323 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 562.70  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923   2 LNTFIVHIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATP 81
Cdd:MTH00071   1 MMTLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923  82 TLALTLALTLWAPLPMPYPVTDLNLSMLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTIV 161
Cdd:MTH00071  81 TMALTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLIL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 162 FTGGFTLTMFNITQETIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMN 241
Cdd:MTH00071 161 LTGGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMN 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 242 TLSAILFMGATNLPMLPELTTINIMTKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILWHTAIPLATAGLP 321
Cdd:MTH00071 241 TLSTILFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIP 320

                 ..
gi 299828923 322 PQ 323
Cdd:MTH00071 321 PM 322
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
4-324 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 547.19  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923   4 TFIVHIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPTL 83
Cdd:MTH00111   3 TLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPIL 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923  84 ALTLALTLWAPLPMPYPVTDLNLSMLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTIVFT 163
Cdd:MTH00111  83 ALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLS 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 164 GGFTLTMFNITQETIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMNTL 243
Cdd:MTH00111 163 GGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTL 242
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 244 SAILFMGATNLPMLPELTTINIMTKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILWHTAIPLATAGLPPQ 323
Cdd:MTH00111 243 TTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQ 322

                 .
gi 299828923 324 L 324
Cdd:MTH00111 323 L 323
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
8-324 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 503.77  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923   8 HIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPTLALTL 87
Cdd:MTH00104   2 FMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923  88 ALTLWAPLPMPYPVTDLNLSMLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTIVFTGGFT 167
Cdd:MTH00104  82 ALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFT 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 168 LTMFNITQETIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMNTLSAIL 247
Cdd:MTH00104 162 LSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTIL 241
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 299828923 248 FMGATNLPMLPELTTINIMTKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILWHTAIPLATAGLPPQL 324
Cdd:MTH00104 242 FLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
5-322 5.45e-159

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 446.28  E-value: 5.45e-159
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923   5 FIVHIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPTLA 84
Cdd:MTH00218   1 MLLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923  85 LTLALTLWAPLPMPYPVTDLNLSMLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTIVFTG 164
Cdd:MTH00218  81 LTLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTG 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 165 GFTLTMFNITQETIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMNTLS 244
Cdd:MTH00218 161 GFSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLS 240
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 299828923 245 AILFMGATNlpmlpelTTINIMTKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILWHTAIPLATAGLPP 322
Cdd:MTH00218 241 VILFLGTSL-------TTINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
3-322 6.41e-156

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 439.03  E-value: 6.41e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923   3 NTFIVHIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPT 82
Cdd:MTH00040   1 MSVILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923  83 LALTLALTLWAPLPMPYPVTDLNLSMLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTIVF 162
Cdd:MTH00040  81 LFLFLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIF 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 163 TGGFTLTMFNITQETIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMNT 242
Cdd:MTH00040 161 SGSFSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 243 LSAILFMGATN-LPMLPELTTINIMTKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILWHTAIPLATAGLP 321
Cdd:MTH00040 241 LSVILFLGGGSpFNEIFPINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILP 320

                 .
gi 299828923 322 P 322
Cdd:MTH00040 321 P 321
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
6-319 5.43e-122

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 352.51  E-value: 5.43e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923   6 IVHIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPTLAL 85
Cdd:MTH00195   2 MISVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLAL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923  86 TLALTLWAPLPMPYPVTDLNLSMLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTIVFTGG 165
Cdd:MTH00195  82 ALALILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGS 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 166 FTLTMFNITQETIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMNTLSA 245
Cdd:MTH00195 162 FDFTIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTT 241
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 299828923 246 ILFMGATNLPMLpelttiniMTKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILWHTAIPLATAG 319
Cdd:MTH00195 242 ILFLGGGGTIIV--------ALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
6-308 1.14e-118

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 344.16  E-value: 1.14e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923   6 IVHIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPTLAL 85
Cdd:MTH00143   1 LVSLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923  86 TLALTLWAPLPMPYPVTDLNLSMLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTIVFTGG 165
Cdd:MTH00143  81 ILALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGS 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 166 FTLTMFNITQETIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMNTLSA 245
Cdd:MTH00143 161 FSFIEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTV 240
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 299828923 246 ILFMGatNLPMLPELTTINIMTKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALIL 308
Cdd:MTH00143 241 VLFFG--GSSVLFLLGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILV 301
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
5-308 7.31e-116

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 336.74  E-value: 7.31e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923   5 FIVHIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPTLA 84
Cdd:MTH00193   1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923  85 LTLALTLWAPLPMPYPVTDLNLSMLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTIVFTG 164
Cdd:MTH00193  81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 165 GFTLTMFNITQETIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMNTLS 244
Cdd:MTH00193 161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 299828923 245 AILFMGATNLPMLpelttinIMTKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALIL 308
Cdd:MTH00193 241 VLMFLGGDLLSLL-------FYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLL 297
NADHdh pfam00146
NADH dehydrogenase;
13-309 1.67e-114

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 333.29  E-value: 1.67e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923   13 LAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPTLALTLALTLW 92
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923   93 APLPM--PYPVTDLNLSMLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTIVFTGGFTLTM 170
Cdd:pfam00146  83 AVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923  171 FNITQETIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMNTLSAILFMG 250
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 299828923  251 ATNLPmLPELTTINIMTKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILW 309
Cdd:pfam00146 243 GWLGP-FPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
19-313 1.19e-108

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 318.52  E-value: 1.19e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923  19 VLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPTLALTLALTLWAPLPMP 98
Cdd:MTH00225  14 LLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSLILWSLYPSM 93
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923  99 YPVTDLNLSMLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTIVFTGGFTLTMFNITQETI 178
Cdd:MTH00225  94 FSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNLFDFSYNQKYF 173
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 179 WLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMNTLSAILFMGAtnlpmLP 258
Cdd:MTH00225 174 WFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSILFFGG-----FF 248
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 299828923 259 ELTTINIMTKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILWHTAI 313
Cdd:MTH00225 249 VTIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLII 303
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
9-322 1.92e-107

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 316.28  E-value: 1.92e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923   9 IINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPTLALTLA 88
Cdd:MTH00054   5 IIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLA 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923  89 LTLWAPLPMPYPV--TDLNLSMLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTIVFTGGF 166
Cdd:MTH00054  85 FIAWGVIPYGEGVvlSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSL 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 167 TLTMFNITQETIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMNTLSAI 246
Cdd:MTH00054 165 NLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVI 244
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 299828923 247 LFMGATNLPMLPELTTINIM---TKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILWHTAIPLATAGLPP 322
Cdd:MTH00054 245 LFLGGWLVISGPTSYFSNFVwfgIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPP 323
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
1-322 4.86e-106

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 312.82  E-value: 4.86e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923   1 MLNTFIVHIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLAT 80
Cdd:MTH00216   1 MMVFIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923  81 PTLALTLALTLWAPLPMPYPV--TDLNLSMLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLS 158
Cdd:MTH00216  81 PVLSFTLALIVWGVIPYERGVliSDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIIS 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 159 TIVFTGGFTLTMFNITQET-IWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANI 237
Cdd:MTH00216 161 VLLCVGSLSITEIVLAQNNgIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHI 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 238 LFMNTLSAILFMGA-TNLPMLPELTTINIMTKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILWHTAIPLA 316
Cdd:MTH00216 241 ILMSCLTTILFLGGwLSPIKYFKGGAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFG 320

                 ....*.
gi 299828923 317 TAGLPP 322
Cdd:MTH00216 321 FNGPPP 326
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
2-309 2.38e-105

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 310.91  E-value: 2.38e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923   2 LNTFIVHIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATP 81
Cdd:COG1005    5 LAPLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAP 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923  82 TLALTLALTLWAPLPM--PYPVTDLNLSMLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLST 159
Cdd:COG1005   85 ILAFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGV 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 160 IVFTGGFTLT-MFNITQETIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIL 238
Cdd:COG1005  165 VLLAGSLNLSeIVEAQAGGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMF 244
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 299828923 239 FMNTLSAILFMGATNLPMLPELTT-----INIMTKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILW 309
Cdd:COG1005  245 LVSALATTLFLGGWLGPFPILPLGglpgiLWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVL 320
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
3-309 1.70e-99

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 295.95  E-value: 1.70e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923   3 NTFIVHIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPT 82
Cdd:PRK06076   7 DLLLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPV 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923  83 LALTLALTLWAPLPM--PYPVTDLNLSMLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTI 160
Cdd:PRK06076  87 IAFIPAFLAWAVIPFgpELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVV 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 161 VFTGGFTLTMFNITQETIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFM 240
Cdd:PRK06076 167 LLAGSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILV 246
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 299828923 241 NTLSAILFMGATNLPMLPE---LTTINIMTKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILW 309
Cdd:PRK06076 247 SALITTLFLGGWLPPFPLGggiPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
2-322 1.51e-92

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 278.82  E-value: 1.51e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923   2 LNTFIVHIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATP 81
Cdd:MTH00029   3 IYSYITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAP 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923  82 TLALTLALTLWAPLPMPYPV--TDLNLSMLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLST 159
Cdd:MTH00029  83 IISFTLAILAWAIVTMDQGVflSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISV 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 160 IVFTGGFTLTMFNITQETIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILF 239
Cdd:MTH00029 163 ILCVGSLNISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIIL 242
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 240 MNTLSAILFMG----------------ATNLPMLPELTTINIMTKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLT 303
Cdd:MTH00029 243 MSCMMTIFFLGgwlspldgiptppeafSIFEQIASSKSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLS 322
                        330
                 ....*....|....*....
gi 299828923 304 LALILWHTAIPLATAGLPP 322
Cdd:MTH00029 323 LGLVILTAGILIGFNGVPP 341
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
6-308 6.53e-87

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 263.56  E-value: 6.53e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923   6 IVHIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPTLAL 85
Cdd:MTH00010   3 ISFFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSL 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923  86 TLALTLWAPLPMPYPVTDLNLSMLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTIVFTGG 165
Cdd:MTH00010  83 ILALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQT 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 166 FTLTMFnITQETIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMNTLSA 245
Cdd:MTH00010 163 FSFSKI-IMSQYSWILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTS 241
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 299828923 246 ILFMGATNLPMLPELTTInimTKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALIL 308
Cdd:MTH00010 242 VFFTSFIPSIFISDLMLI---LKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLM 301
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
16-304 5.56e-67

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 211.30  E-value: 5.56e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923  16 IVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPTLALTLALTLWAPL 95
Cdd:MTH00090   6 MIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEWFVL 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923  96 PMPYPVTDLNLSMLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTIVFTGGFTLTM-FNIT 174
Cdd:MTH00090  86 PYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVSsFSLS 165
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 175 QETIWLlapawplaaMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMNTLSAILFMGatnl 254
Cdd:MTH00090 166 LFVIYL---------PFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK---- 232
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 299828923 255 pmlpelttINIMTKAALLSaLFLWVRASYPRFRYDQLMHLVWKNFLPLTL 304
Cdd:MTH00090 233 --------FSFLMLFLIFS-LLIFIRSSYPRFRYDMMMSMFWFKFLPLSL 273
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
19-304 5.20e-53

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 175.88  E-value: 5.20e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923  19 VLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPTLALTLALTLWAPLPMP 98
Cdd:MTH00058  14 ILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSY 93
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923  99 YPVTDLNLSMLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTIVFTGGFTLTMFNITQETI 178
Cdd:MTH00058  94 YSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYSGWLS 173
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 179 WLLAPawPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMNTLSAILFMGAtnlpmlp 258
Cdd:MTH00058 174 VLLFP--LIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFGG------- 244
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 299828923 259 elTTINIMTKAALLsaLFLWVRASYPRFRYDQLMHLVWKNFLPLTL 304
Cdd:MTH00058 245 --GFVSIMLLFHLL--FFMWARATLPRVRYDYFVNFFWEYCLVLLI 286
ndhA CHL00032
NADH dehydrogenase subunit 1
13-308 1.53e-45

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 158.19  E-value: 1.53e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923  13 LAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPTLALTLALTLW 92
Cdd:CHL00032  34 LTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISILLSY 113
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923  93 APLPMPYP--VTDLNLSMLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTIVFTGG----- 165
Cdd:CHL00032 114 LVIPFGYHlvLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSlstvd 193
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 166 -------FTLTMFNITQETIWLLApawplaamWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIL 238
Cdd:CHL00032 194 iveaqskYGFWGWNLWRQPIGFIV--------FLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLL 265
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 239 FMNTLSAILFMGATNLPM----LPEL-----------TTINI---MTKAALLSALFLWVRASYPRFRYDQLMHLVWKNFL 300
Cdd:CHL00032 266 VSSLFVTVLYLGGWNLSIpyifIPELfeinktggvfgTTIGIfitLAKTYLFLFISITTRWTLPRLRMDQLLNLGWKFLL 345

                 ....*...
gi 299828923 301 PLTLALIL 308
Cdd:CHL00032 346 PISLGNLL 353
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
6-309 5.84e-30

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 115.67  E-value: 5.84e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923   6 IVHIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPnvvgpyGLLQPIADGVKLFIKEPVRPSTSSP-FLFLATPTLA 84
Cdd:COG0650    1 MMLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWlFRAAPYVALA 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923  85 LTLALTLWAPLPMPYPVTDLNLSMLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTIVFTG 164
Cdd:COG0650   75 AMLLAALLVPVLTTGPPLSFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLAG 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828923 165 GFTL-TMFNITQETIWLLAP--AWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMN 241
Cdd:COG0650  155 STSLsDIVAYQAAHGPLLLSpsLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVLL 234
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 299828923 242 TLSAILFMGAtNLPMLPELTTINIMTKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILW 309
Cdd:COG0650  235 SLFVNLFLPW-GIALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH