NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|299828937|ref|YP_003734767|]
View 

NADH dehydrogenase subunit 1 (mitochondrion) [Lycothrissa crocodilus]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009580)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
1-324 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177192  Cd Length: 324  Bit Score: 603.91  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937   1 MLNTFITHIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGIKLFIKEPIRPSTSSPFLFLAA 80
Cdd:MTH00134   1 MLSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLAT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937  81 PALALTLALTLWAPLPMPLPVTDLNLSMLFILAVSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTV 160
Cdd:MTH00134  81 PMLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVI 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 161 MLTGGFTLTMFSIAQESIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFM 240
Cdd:MTH00134 161 IFTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 241 NTLSTILFMGATNLPSLPEFTTMNIMIKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILWHTAIPLATASI 320
Cdd:MTH00134 241 NTLSAILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGL 320

                 ....
gi 299828937 321 PPQL 324
Cdd:MTH00134 321 PPQL 324
 
Name Accession Description Interval E-value
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
1-324 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 603.91  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937   1 MLNTFITHIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGIKLFIKEPIRPSTSSPFLFLAA 80
Cdd:MTH00134   1 MLSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLAT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937  81 PALALTLALTLWAPLPMPLPVTDLNLSMLFILAVSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTV 160
Cdd:MTH00134  81 PMLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVI 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 161 MLTGGFTLTMFSIAQESIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFM 240
Cdd:MTH00134 161 IFTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 241 NTLSTILFMGATNLPSLPEFTTMNIMIKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILWHTAIPLATASI 320
Cdd:MTH00134 241 NTLSAILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGL 320

                 ....
gi 299828937 321 PPQL 324
Cdd:MTH00134 321 PPQL 324
NADHdh pfam00146
NADH dehydrogenase;
13-309 2.20e-116

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 337.91  E-value: 2.20e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937   13 LAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGIKLFIKEPIRPSTSSPFLFLAAPALALTLALTLW 92
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937   93 APLPM--PLPVTDLNLSMLFILAVSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTVMLTGGFTLTM 170
Cdd:pfam00146  83 AVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937  171 FSIAQESIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMNTLSTILFMG 250
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 299828937  251 ATNLPsLPEFTTMNIMIKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILW 309
Cdd:pfam00146 243 GWLGP-FPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
2-309 3.05e-107

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 315.92  E-value: 3.05e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937   2 LNTFITHIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGIKLFIKEPIRPSTSSPFLFLAAP 81
Cdd:COG1005    5 LAPLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAP 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937  82 ALALTLALTLWAPLPM--PLPVTDLNLSMLFILAVSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLST 159
Cdd:COG1005   85 ILAFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGV 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 160 VMLTGGFTLTMFSIAQES-IWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIL 238
Cdd:COG1005  165 VLLAGSLNLSEIVEAQAGgLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMF 244
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 299828937 239 FMNTLSTILFMGATNLPSLPEFTTMNI-----MIKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILW 309
Cdd:COG1005  245 LVSALATTLFLGGWLGPFPILPLGGLPgilwfLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVL 320
 
Name Accession Description Interval E-value
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
1-324 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 603.91  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937   1 MLNTFITHIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGIKLFIKEPIRPSTSSPFLFLAA 80
Cdd:MTH00134   1 MLSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLAT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937  81 PALALTLALTLWAPLPMPLPVTDLNLSMLFILAVSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTV 160
Cdd:MTH00134  81 PMLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVI 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 161 MLTGGFTLTMFSIAQESIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFM 240
Cdd:MTH00134 161 IFTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 241 NTLSTILFMGATNLPSLPEFTTMNIMIKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILWHTAIPLATASI 320
Cdd:MTH00134 241 NTLSAILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGL 320

                 ....
gi 299828937 321 PPQL 324
Cdd:MTH00134 321 PPQL 324
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
2-323 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 558.47  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937   2 LNTFITHIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGIKLFIKEPIRPSTSSPFLFLAAP 81
Cdd:MTH00071   1 MMTLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937  82 ALALTLALTLWAPLPMPLPVTDLNLSMLFILAVSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTVM 161
Cdd:MTH00071  81 TMALTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLIL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 162 LTGGFTLTMFSIAQESIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMN 241
Cdd:MTH00071 161 LTGGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMN 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 242 TLSTILFMGATNLPSLPEFTTMNIMIKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILWHTAIPLATASIP 321
Cdd:MTH00071 241 TLSTILFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIP 320

                 ..
gi 299828937 322 PQ 323
Cdd:MTH00071 321 PM 322
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
4-324 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 538.33  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937   4 TFITHIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGIKLFIKEPIRPSTSSPFLFLAAPAL 83
Cdd:MTH00111   3 TLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPIL 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937  84 ALTLALTLWAPLPMPLPVTDLNLSMLFILAVSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTVMLT 163
Cdd:MTH00111  83 ALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLS 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 164 GGFTLTMFSIAQESIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMNTL 243
Cdd:MTH00111 163 GGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTL 242
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 244 STILFMGATNLPSLPEFTTMNIMIKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILWHTAIPLATASIPPQ 323
Cdd:MTH00111 243 TTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQ 322

                 .
gi 299828937 324 L 324
Cdd:MTH00111 323 L 323
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
8-324 9.54e-180

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 499.15  E-value: 9.54e-180
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937   8 HIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGIKLFIKEPIRPSTSSPFLFLAAPALALTL 87
Cdd:MTH00104   2 FMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937  88 ALTLWAPLPMPLPVTDLNLSMLFILAVSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTVMLTGGFT 167
Cdd:MTH00104  82 ALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFT 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 168 LTMFSIAQESIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMNTLSTIL 247
Cdd:MTH00104 162 LSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTIL 241
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 299828937 248 FMGATNLPSLPEFTTMNIMIKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILWHTAIPLATASIPPQL 324
Cdd:MTH00104 242 FLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
5-322 5.24e-157

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 441.27  E-value: 5.24e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937   5 FITHIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGIKLFIKEPIRPSTSSPFLFLAAPALA 84
Cdd:MTH00218   1 MLLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937  85 LTLALTLWAPLPMPLPVTDLNLSMLFILAVSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTVMLTG 164
Cdd:MTH00218  81 LTLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTG 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 165 GFTLTMFSIAQESIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMNTLS 244
Cdd:MTH00218 161 GFSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLS 240
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 299828937 245 TILFMGATnlpslpeFTTMNIMIKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILWHTAIPLATASIPP 322
Cdd:MTH00218 241 VILFLGTS-------LTTINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
3-322 1.94e-153

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 432.86  E-value: 1.94e-153
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937   3 NTFITHIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGIKLFIKEPIRPSTSSPFLFLAAPA 82
Cdd:MTH00040   1 MSVILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937  83 LALTLALTLWAPLPMPLPVTDLNLSMLFILAVSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTVML 162
Cdd:MTH00040  81 LFLFLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIF 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 163 TGGFTLTMFSIAQESIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMNT 242
Cdd:MTH00040 161 SGSFSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 243 LSTILFMGATN-LPSLPEFTTMNIMIKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILWHTAIPLATASIP 321
Cdd:MTH00040 241 LSVILFLGGGSpFNEIFPINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILP 320

                 .
gi 299828937 322 P 322
Cdd:MTH00040 321 P 321
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
9-316 1.07e-119

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 346.73  E-value: 1.07e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937   9 IINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGIKLFIKEPIRPSTSSPFLFLAAPALALTLA 88
Cdd:MTH00195   5 VIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALA 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937  89 LTLWAPLPMPLPVTDLNLSMLFILAVSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTVMLTGGFTL 168
Cdd:MTH00195  85 LILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDF 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 169 TMFSIAQESIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMNTLSTILF 248
Cdd:MTH00195 165 TIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILF 244
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 299828937 249 MGATNlpslpeftTMNIMIKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILWHTAIPLA 316
Cdd:MTH00195 245 LGGGG--------TIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFA 304
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
8-308 1.07e-116

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 339.15  E-value: 1.07e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937   8 HIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGIKLFIKEPIRPSTSSPFLFLAAPALALTL 87
Cdd:MTH00143   3 SLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLIL 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937  88 ALTLWAPLPMPLPVTDLNLSMLFILAVSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTVMLTGGFT 167
Cdd:MTH00143  83 ALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFS 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 168 LTMFSIAQESIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMNTLSTIL 247
Cdd:MTH00143 163 FIEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVL 242
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 299828937 248 FMGatNLPSLPEFTTMNIMIKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALIL 308
Cdd:MTH00143 243 FFG--GSSVLFLLGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILV 301
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
9-308 1.21e-116

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 338.67  E-value: 1.21e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937   9 IINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGIKLFIKEPIRPSTSSPFLFLAAPALALTLA 88
Cdd:MTH00193   5 LINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLS 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937  89 LTLWAPLPMPLPVTDLNLSMLFILAVSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTVMLTGGFTL 168
Cdd:MTH00193  85 LLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNL 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 169 TMFSIAQESIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMNTLSTILF 248
Cdd:MTH00193 165 LDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVLMF 244
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 249 MGATNLpslpeftTMNIMIKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALIL 308
Cdd:MTH00193 245 LGGDLL-------SLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLL 297
NADHdh pfam00146
NADH dehydrogenase;
13-309 2.20e-116

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 337.91  E-value: 2.20e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937   13 LAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGIKLFIKEPIRPSTSSPFLFLAAPALALTLALTLW 92
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937   93 APLPM--PLPVTDLNLSMLFILAVSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTVMLTGGFTLTM 170
Cdd:pfam00146  83 AVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937  171 FSIAQESIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMNTLSTILFMG 250
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 299828937  251 ATNLPsLPEFTTMNIMIKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILW 309
Cdd:pfam00146 243 GWLGP-FPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
19-313 1.39e-110

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 323.53  E-value: 1.39e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937  19 VLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGIKLFIKEPIRPSTSSPFLFLAAPALALTLALTLWAPLPMP 98
Cdd:MTH00225  14 LLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSLILWSLYPSM 93
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937  99 LPVTDLNLSMLFILAVSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTVMLTGGFTLTMFSIAQESI 178
Cdd:MTH00225  94 FSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNLFDFSYNQKYF 173
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 179 WLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMNTLSTILFMGatnlpSLP 258
Cdd:MTH00225 174 WFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSILFFG-----GFF 248
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 299828937 259 EFTTMNIMIKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILWHTAI 313
Cdd:MTH00225 249 VTIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLII 303
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
9-322 1.42e-109

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 321.68  E-value: 1.42e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937   9 IINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGIKLFIKEPIRPSTSSPFLFLAAPALALTLA 88
Cdd:MTH00054   5 IIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLA 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937  89 LTLWAPLPMPLPV--TDLNLSMLFILAVSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTVMLTGGF 166
Cdd:MTH00054  85 FIAWGVIPYGEGVvlSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSL 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 167 TLTMFSIAQESIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMNTLSTI 246
Cdd:MTH00054 165 NLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVI 244
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 299828937 247 LFMGATNLPSLPEFTTMNIM---IKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILWHTAIPLATASIPP 322
Cdd:MTH00054 245 LFLGGWLVISGPTSYFSNFVwfgIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPP 323
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
1-322 1.29e-107

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 316.68  E-value: 1.29e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937   1 MLNTFITHIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGIKLFIKEPIRPSTSSPFLFLAA 80
Cdd:MTH00216   1 MMVFIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937  81 PALALTLALTLWAPLPMPLPV--TDLNLSMLFILAVSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLS 158
Cdd:MTH00216  81 PVLSFTLALIVWGVIPYERGVliSDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIIS 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 159 TVMLTGGFTLTMFSIAQES-IWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANI 237
Cdd:MTH00216 161 VLLCVGSLSITEIVLAQNNgIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHI 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 238 LFMNTLSTILFMGATNLPSLPEFTTMNIM-IKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILWHTAIPLA 316
Cdd:MTH00216 241 ILMSCLTTILFLGGWLSPIKYFKGGAGWFgLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFG 320

                 ....*.
gi 299828937 317 TASIPP 322
Cdd:MTH00216 321 FNGPPP 326
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
2-309 3.05e-107

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 315.92  E-value: 3.05e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937   2 LNTFITHIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGIKLFIKEPIRPSTSSPFLFLAAP 81
Cdd:COG1005    5 LAPLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAP 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937  82 ALALTLALTLWAPLPM--PLPVTDLNLSMLFILAVSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLST 159
Cdd:COG1005   85 ILAFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGV 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 160 VMLTGGFTLTMFSIAQES-IWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIL 238
Cdd:COG1005  165 VLLAGSLNLSEIVEAQAGgLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMF 244
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 299828937 239 FMNTLSTILFMGATNLPSLPEFTTMNI-----MIKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILW 309
Cdd:COG1005  245 LVSALATTLFLGGWLGPFPILPLGGLPgilwfLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVL 320
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
3-309 1.43e-101

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 300.96  E-value: 1.43e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937   3 NTFITHIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGIKLFIKEPIRPSTSSPFLFLAAPA 82
Cdd:PRK06076   7 DLLLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPV 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937  83 LALTLALTLWAPLPM--PLPVTDLNLSMLFILAVSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTV 160
Cdd:PRK06076  87 IAFIPAFLAWAVIPFgpELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVV 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 161 MLTGGFTLTMFSIAQESIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFM 240
Cdd:PRK06076 167 LLAGSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILV 246
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 299828937 241 NTLSTILFMGATNLPSLPEFTTMNI---MIKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILW 309
Cdd:PRK06076 247 SALITTLFLGGWLPPFPLGGGIPGAiwfVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
2-322 6.53e-93

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 279.98  E-value: 6.53e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937   2 LNTFITHIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGIKLFIKEPIRPSTSSPFLFLAAP 81
Cdd:MTH00029   3 IYSYITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAP 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937  82 ALALTLALTLWAPLPMPLPV--TDLNLSMLFILAVSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLST 159
Cdd:MTH00029  83 IISFTLAILAWAIVTMDQGVflSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISV 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 160 VMLTGGFTLTMFSIAQESIWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILF 239
Cdd:MTH00029 163 ILCVGSLNISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIIL 242
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 240 MNTLSTILFMG----------------ATNLPSLPEFTTMNIMIKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLT 303
Cdd:MTH00029 243 MSCMMTIFFLGgwlspldgiptppeafSIFEQIASSKSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLS 322
                        330
                 ....*....|....*....
gi 299828937 304 LALILWHTAIPLATASIPP 322
Cdd:MTH00029 323 LGLVILTAGILIGFNGVPP 341
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
6-308 1.47e-89

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 270.11  E-value: 1.47e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937   6 ITHIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGIKLFIKEPIRPSTSSPFLFLAAPALAL 85
Cdd:MTH00010   3 ISFFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSL 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937  86 TLALTLWAPLPMPLPVTDLNLSMLFILAVSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTVMLTGG 165
Cdd:MTH00010  83 ILALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQT 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 166 FTLTMFSIAQESiWLLAPAWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMNTLST 245
Cdd:MTH00010 163 FSFSKIIMSQYS-WILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTS 241
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 299828937 246 ILFMgatnlPSLPEFTTMNIMI--KAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALIL 308
Cdd:MTH00010 242 VFFT-----SFIPSIFISDLMLilKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLM 301
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
16-304 9.53e-66

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 208.21  E-value: 9.53e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937  16 IVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGIKLFIKEPIRPSTSSPFLFLAAPALALTLALTLWAPL 95
Cdd:MTH00090   6 MIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEWFVL 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937  96 PMPLPVTDLNLSMLFILAVSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTVMLTGGFTLTM-FSIA 174
Cdd:MTH00090  86 PYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVSsFSLS 165
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 175 QESIWLlapawplaaMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMNTLSTILFMGatnl 254
Cdd:MTH00090 166 LFVIYL---------PFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK---- 232
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 299828937 255 pslpefttMNIMIKAALLSaLFLWVRASYPRFRYDQLMHLVWKNFLPLTL 304
Cdd:MTH00090 233 --------FSFLMLFLIFS-LLIFIRSSYPRFRYDMMMSMFWFKFLPLSL 273
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
19-304 1.14e-53

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 177.42  E-value: 1.14e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937  19 VLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGIKLFIKEPIRPSTSSPFLFLAAPALALTLALTLWAPLPMP 98
Cdd:MTH00058  14 ILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSY 93
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937  99 LPVTDLNLSMLFILAVSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTVMLTGGFTLTMFSIAQESI 178
Cdd:MTH00058  94 YSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYSGWLS 173
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 179 WLLAPawPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMNTLSTILFMGatnlpslp 258
Cdd:MTH00058 174 VLLFP--LIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFG-------- 243
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 299828937 259 eFTTMNIMIKAALLsaLFLWVRASYPRFRYDQLMHLVWKNFLPLTL 304
Cdd:MTH00058 244 -GGFVSIMLLFHLL--FFMWARATLPRVRYDYFVNFFWEYCLVLLI 286
ndhA CHL00032
NADH dehydrogenase subunit 1
13-316 5.91e-47

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 162.04  E-value: 5.91e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937  13 LAYIVPVLLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGIKLFIKEPIRPSTSSPFLFLAAPALALTLALTLW 92
Cdd:CHL00032  34 LTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISILLSY 113
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937  93 APLPMP--LPVTDLNLSMLFILAVSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTVMLTGGFTLTM 170
Cdd:CHL00032 114 LVIPFGyhLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSLSTVD 193
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 171 FSIAQES--IWllapAWPLaamW---------FVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILF 239
Cdd:CHL00032 194 IVEAQSKygFW----GWNL---WrqpigfivfLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLV 266
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 240 MNTLSTILFMGATNLP----SLPEF-----------TTMNIMIKAAlLSALFLWV----RASYPRFRYDQLMHLVWKNFL 300
Cdd:CHL00032 267 SSLFVTVLYLGGWNLSipyiFIPELfeinktggvfgTTIGIFITLA-KTYLFLFIsittRWTLPRLRMDQLLNLGWKFLL 345
                        330
                 ....*....|....*.
gi 299828937 301 PLTLALILWHTAIPLA 316
Cdd:CHL00032 346 PISLGNLLLTTSFQLL 361
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
6-309 2.69e-27

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 108.35  E-value: 2.69e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937   6 ITHIINPLAYIVPVLLAVAFLTLVERKVLGYMQLRKGPnvvgpyGLLQPIADGIKLFIKEPIRPSTSSPFLFLAAPALAL 85
Cdd:COG0650    1 MMLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWLFRAAPYVALA 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937  86 TLALtlwAPLPMPLPVTDLNLS----MLFILAVSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLSTVM 161
Cdd:COG0650   75 AMLL---AALLVPVLTTGPPLSfsgdLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALAL 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299828937 162 LTGGFTL-TMFSIAQESIWLLAP--AWPLAAMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIL 238
Cdd:COG0650  152 LAGSTSLsDIVAYQAAHGPLLLSpsLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLF 231
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 299828937 239 FMNTLSTILFMGAtNLPSLPEFTTMNIMIKAALLSALFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILW 309
Cdd:COG0650  232 VLLSLFVNLFLPW-GIALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH